Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451990 | A0A072U4S0 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa1451990 | 0.812596 | 3.915807e-51 | -8.615850e-47 |
| Msa0043740 | Msa1451990 | 0.829837 | 4.116237e-55 | -8.615850e-47 |
| Msa0059440 | Msa1451990 | 0.800613 | 1.327341e-48 | -8.615850e-47 |
| Msa0090090 | Msa1451990 | 0.839279 | 1.742701e-57 | -8.615850e-47 |
| Msa0090380 | Msa1451990 | 0.805561 | 1.257956e-49 | -8.615850e-47 |
| Msa0094710 | Msa1451990 | 0.810914 | 9.094842e-51 | -8.615850e-47 |
| Msa1355510 | Msa1451990 | 0.818374 | 2.026657e-52 | -8.615850e-47 |
| Msa1361710 | Msa1451990 | 0.831803 | 1.356740e-55 | -8.615850e-47 |
| Msa1369320 | Msa1451990 | 0.834907 | 2.284937e-56 | -8.615850e-47 |
| Msa1398140 | Msa1451990 | 0.825010 | 5.916762e-54 | -8.615850e-47 |
| Msa1413800 | Msa1451990 | 0.802581 | 5.242583e-49 | -8.615850e-47 |
| Msa1420940 | Msa1451990 | 0.835279 | 1.840172e-56 | -8.615850e-47 |
| Msa1427000 | Msa1451990 | 0.807003 | 6.249117e-50 | -8.615850e-47 |
| Msa1433410 | Msa1451990 | 0.805520 | 1.283166e-49 | -8.615850e-47 |
| Msa1435320 | Msa1451990 | 0.800368 | 1.489348e-48 | -8.615850e-47 |
| Msa1439780 | Msa1451990 | 0.810884 | 9.232604e-51 | -8.615850e-47 |
| Msa1443400 | Msa1451990 | 0.803406 | 3.540206e-49 | -8.615850e-47 |
| Msa1447880 | Msa1451990 | 0.813455 | 2.537471e-51 | -8.615850e-47 |
| Msa1448040 | Msa1451990 | 0.801896 | 7.252984e-49 | -8.615850e-47 |
| Msa1451990 | Msa1455200 | 0.814758 | 1.308753e-51 | -8.615850e-47 |
| Msa0608980 | Msa1451990 | 0.818615 | 1.787267e-52 | -8.615850e-47 |
| Msa0615210 | Msa1451990 | 0.802410 | 5.684828e-49 | -8.615850e-47 |
| Msa0650560 | Msa1451990 | 0.814763 | 1.305452e-51 | -8.615850e-47 |
| Msa0654640 | Msa1451990 | 0.802477 | 5.506450e-49 | -8.615850e-47 |
| Msa0704560 | Msa1451990 | 0.810501 | 1.117153e-50 | -8.615850e-47 |
| Msa0704680 | Msa1451990 | 0.804852 | 1.770315e-49 | -8.615850e-47 |
| Msa0740630 | Msa1451990 | 0.826644 | 2.422639e-54 | -8.615850e-47 |
| Msa0790920 | Msa1451990 | 0.996261 | 2.558918e-225 | -8.615850e-47 |
| Msa0791740 | Msa1451990 | 0.821375 | 4.174744e-53 | -8.615850e-47 |
| Msa0820880 | Msa1451990 | 0.827967 | 1.167698e-54 | -8.615850e-47 |
| Msa0137560 | Msa1451990 | 0.842064 | 3.248279e-58 | -8.615850e-47 |
| Msa0137860 | Msa1451990 | 0.803977 | 2.694750e-49 | -8.615850e-47 |
| Msa0150620 | Msa1451990 | 0.815129 | 1.083099e-51 | -8.615850e-47 |
| Msa0162680 | Msa1451990 | 0.800107 | 1.683383e-48 | -8.615850e-47 |
| Msa0170770 | Msa1451990 | 0.806008 | 1.013099e-49 | -8.615850e-47 |
| Msa0182560 | Msa1451990 | 0.810004 | 1.429895e-50 | -8.615850e-47 |
| Msa0185100 | Msa1451990 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0193190 | Msa1451990 | 0.825736 | 3.983632e-54 | -8.615850e-47 |
| Msa0223140 | Msa1451990 | 0.800226 | 1.591647e-48 | -8.615850e-47 |
| Msa1225580 | Msa1451990 | 0.815925 | 7.202403e-52 | -8.615850e-47 |
| Msa1246790 | Msa1451990 | 0.813985 | 1.939808e-51 | -8.615850e-47 |
| Msa1256060 | Msa1451990 | 0.827548 | 1.471900e-54 | -8.615850e-47 |
| Msa1262540 | Msa1451990 | 0.808227 | 3.434866e-50 | -8.615850e-47 |
| Msa1296240 | Msa1451990 | 0.840565 | 8.055550e-58 | -8.615850e-47 |
| Msa0367860 | Msa1451990 | 0.822238 | 2.636488e-53 | -8.615850e-47 |
| Msa0393100 | Msa1451990 | 0.802480 | 5.500076e-49 | -8.615850e-47 |
| Msa0415640 | Msa1451990 | 0.809297 | 2.028594e-50 | -8.615850e-47 |
| Msa0434400 | Msa1451990 | 0.808548 | 2.933943e-50 | -8.615850e-47 |
| Msa0460600 | Msa1451990 | 0.811165 | 8.025829e-51 | -8.615850e-47 |
| Msa1011250 | Msa1451990 | 0.809008 | 2.339088e-50 | -8.615850e-47 |
| Msa1025750 | Msa1451990 | 0.808562 | 2.914627e-50 | -8.615850e-47 |
| Msa1030240 | Msa1451990 | 0.803762 | 2.985957e-49 | -8.615850e-47 |
| Msa1069890 | Msa1451990 | 0.803804 | 2.926279e-49 | -8.615850e-47 |
| Msa1089190 | Msa1451990 | 0.804042 | 2.611323e-49 | -8.615850e-47 |
| Msa0264680 | Msa1451990 | 0.817852 | 2.659099e-52 | -8.615850e-47 |
| Msa0273070 | Msa1451990 | 0.820786 | 5.705459e-53 | -8.615850e-47 |
| Msa0296910 | Msa1451990 | 0.818392 | 2.007812e-52 | -8.615850e-47 |
| Msa0302510 | Msa1451990 | 0.802246 | 6.143763e-49 | -8.615850e-47 |
| Msa0302730 | Msa1451990 | 0.818119 | 2.314536e-52 | -8.615850e-47 |
| Msa0307420 | Msa1451990 | 0.807160 | 5.790421e-50 | -8.615850e-47 |
| Msa0335070 | Msa1451990 | 0.811951 | 5.415877e-51 | -8.615850e-47 |
| Msa0345980 | Msa1451990 | 0.814913 | 1.209403e-51 | -8.615850e-47 |
| Msa1114670 | Msa1451990 | 0.818624 | 1.778363e-52 | -8.615850e-47 |
| Msa1119920 | Msa1451990 | 0.826871 | 2.138849e-54 | -8.615850e-47 |
| Msa1120580 | Msa1451990 | 0.801117 | 1.047680e-48 | -8.615850e-47 |
| Msa1128790 | Msa1451990 | 0.816005 | 6.911821e-52 | -8.615850e-47 |
| Msa1131790 | Msa1451990 | 0.801478 | 8.833890e-49 | -8.615850e-47 |
| Msa1136760 | Msa1451990 | 0.840578 | 7.990282e-58 | -8.615850e-47 |
| Msa1157110 | Msa1451990 | 0.806350 | 8.585427e-50 | -8.615850e-47 |
| Msa1157670 | Msa1451990 | 0.802168 | 6.377683e-49 | -8.615850e-47 |
| Msa1159170 | Msa1451990 | 0.804865 | 1.759178e-49 | -8.615850e-47 |
| Msa1171450 | Msa1451990 | 0.989473 | 2.833798e-178 | -8.615850e-47 |
| Msa1203810 | Msa1451990 | 0.830443 | 2.928076e-55 | -8.615850e-47 |
| Msa1208990 | Msa1451990 | 0.805520 | 1.283247e-49 | -8.615850e-47 |
| Msa1221220 | Msa1451990 | 0.804410 | 2.189107e-49 | -8.615850e-47 |
| Msa0488580 | Msa1451990 | 0.810413 | 1.167172e-50 | -8.615850e-47 |
| Msa0517270 | Msa1451990 | 0.812429 | 4.259642e-51 | -8.615850e-47 |
| Msa0522170 | Msa1451990 | 0.803568 | 3.276037e-49 | -8.615850e-47 |
| Msa0534270 | Msa1451990 | 0.824630 | 7.273168e-54 | -8.615850e-47 |
| Msa0561300 | Msa1451990 | 0.819810 | 9.549806e-53 | -8.615850e-47 |
| Msa0584580 | Msa1451990 | 0.804251 | 2.363071e-49 | -8.615850e-47 |
| Msa0584600 | Msa1451990 | 0.821151 | 4.701261e-53 | -8.615850e-47 |
| Msa0588710 | Msa1451990 | 0.809133 | 2.199965e-50 | -8.615850e-47 |
| Msa0592660 | Msa1451990 | 0.808855 | 2.522871e-50 | -8.615850e-47 |
| Msa0848440 | Msa1451990 | 0.816505 | 5.343126e-52 | -8.615850e-47 |
| Msa0859040 | Msa1451990 | 0.816358 | 5.762092e-52 | -8.615850e-47 |
| Msa0863990 | Msa1451990 | 0.806930 | 6.476839e-50 | -8.615850e-47 |
| Msa0895620 | Msa1451990 | 0.824457 | 7.988231e-54 | -8.615850e-47 |
| Msa0922190 | Msa1451990 | 0.805643 | 1.208961e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451990 | MtrunA17_Chr7g0266411 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Msa1451990 | MtrunA17_Chr1g0178531 | 43.871 | 310 | 119 | 14 | 1 | 287 | 3 | 280 | 5.27e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451990 | AT3G52710.1 | 41.447 | 304 | 133 | 12 | 5 | 281 | 3 | 288 | 6.41e-49 | 164 |
| Msa1451990 | AT2G36220.1 | 40.702 | 285 | 128 | 12 | 2 | 277 | 4 | 256 | 6.28e-40 | 140 |
Find 75 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAATTGGAATTGGAATT+AGG | 0.193499 | tig0033647:-27220 | None:intergenic |
| ATTCTCCGCCGGAATCATTC+TGG | 0.318910 | tig0033647:+27101 | Msa1451990:CDS |
| TCGAATTGGAATTGGAATTA+GGG | 0.319492 | tig0033647:-27219 | None:intergenic |
| AAGGAAGGTTTCTGAGGTTT+AGG | 0.324775 | tig0033647:-27304 | None:intergenic |
| GAGGGTGAACCGCCTGGTTT+GGG | 0.327472 | tig0033647:+27745 | Msa1451990:CDS |
| GGAGGGTGAACCGCCTGGTT+TGG | 0.332813 | tig0033647:+27744 | Msa1451990:CDS |
| CGACGTGTCGTTTGTGGAAT+CGG | 0.337131 | tig0033647:+27702 | Msa1451990:CDS |
| CTTAAACGACGTGTCGTTTG+TGG | 0.368356 | tig0033647:+27696 | Msa1451990:CDS |
| GGCTTTGGCTGCGGCGGTGA+CGG | 0.374114 | tig0033647:-27476 | None:intergenic |
| AATGATTCCGGCGGAGAATC+GGG | 0.385576 | tig0033647:-27097 | None:intergenic |
| AAATCGAAGACGTCGATGAT+TGG | 0.397400 | tig0033647:+27277 | Msa1451990:CDS |
| CTGGAGAGCCAGAATGATTC+CGG | 0.399676 | tig0033647:-27109 | None:intergenic |
| CCAACGGAGGCGCTTCGCTT+TGG | 0.403150 | tig0033647:-27376 | None:intergenic |
| TGTTGAACTTGAATTTCCTT+TGG | 0.404679 | tig0033647:-27188 | None:intergenic |
| GGGATGATGCGGTTCACGTC+TGG | 0.406943 | tig0033647:+27769 | Msa1451990:CDS |
| AGTCGAAGTCGAATTGGAAT+TGG | 0.409214 | tig0033647:-27227 | None:intergenic |
| TTTCCCATGCAAGACACTTT+CGG | 0.424095 | tig0033647:-27424 | None:intergenic |
| GAATGATTCCGGCGGAGAAT+CGG | 0.431837 | tig0033647:-27098 | None:intergenic |
| GTTGGAAGTCGAAGTCGAAT+TGG | 0.435363 | tig0033647:-27233 | None:intergenic |
| GGATGATGATGAGAGGATTC+CGG | 0.444774 | tig0033647:-27076 | None:intergenic |
| GGCTGCGGCGGTGACGGAGG+AGG | 0.447604 | tig0033647:-27470 | None:intergenic |
| CAAGACACTTTCGGTGATGA+AGG | 0.466166 | tig0033647:-27415 | None:intergenic |
| ATCAGTTGAACCGCCGGCAC+AGG | 0.471514 | tig0033647:-27002 | None:intergenic |
| GAGAAACGATTCTTCGGCGT+TGG | 0.475237 | tig0033647:+27606 | Msa1451990:CDS |
| CACGGCGGCTTTGGCTGCGG+CGG | 0.478127 | tig0033647:-27482 | None:intergenic |
| ATCATGTTTATTCCTTCCAC+CGG | 0.487247 | tig0033647:-27581 | None:intergenic |
| GGTGAACCGCCTGGTTTGGG+TGG | 0.490276 | tig0033647:+27748 | Msa1451990:CDS |
| TTTCACGGCGGCTTTGGCTG+CGG | 0.490475 | tig0033647:-27485 | None:intergenic |
| CGCATCATCCCACCCAAACC+AGG | 0.492634 | tig0033647:-27757 | None:intergenic |
| GGAAACAACTTAATGTTACT+CGG | 0.496570 | tig0033647:-27355 | None:intergenic |
| CAAAGCGAAGCGCCTCCGTT+GGG | 0.503793 | tig0033647:+27377 | Msa1451990:CDS |
| CTGGAAGACGGTCTGAGTCG+TGG | 0.507701 | tig0033647:+27788 | Msa1451990:CDS |
| CCAAAGCGAAGCGCCTCCGT+TGG | 0.522856 | tig0033647:+27376 | Msa1451990:CDS |
| GTATCGGAGGGTGAACCGCC+TGG | 0.524644 | tig0033647:+27739 | Msa1451990:CDS |
| GTGAACCGCCTGGTTTGGGT+GGG | 0.526851 | tig0033647:+27749 | Msa1451990:CDS |
| ATTTGCGAATCGCTGAGAGT+TGG | 0.530028 | tig0033647:-27251 | None:intergenic |
| TGATCGGAGAAACGATTCTT+CGG | 0.530088 | tig0033647:+27600 | Msa1451990:CDS |
| TGGAAGACGGTCTGAGTCGT+GGG | 0.533984 | tig0033647:+27789 | Msa1451990:CDS |
| AGATGAAGAAAACGAGTGGT+TGG | 0.534269 | tig0033647:+27132 | Msa1451990:CDS |
| ACACTGGTTTCAGCCTGTGC+CGG | 0.536079 | tig0033647:+26989 | Msa1451990:CDS |
| TGATGAGAGGATTCCGGTGG+AGG | 0.536818 | tig0033647:-27070 | None:intergenic |
| TTTGGCTGCGGCGGTGACGG+AGG | 0.537701 | tig0033647:-27473 | None:intergenic |
| AGATTCTTAGCGTCGAAGGA+AGG | 0.541094 | tig0033647:-27319 | None:intergenic |
| TCTCAAAACGGATCCTCCAC+CGG | 0.544913 | tig0033647:+27057 | Msa1451990:CDS |
| ATCGTCGGCTTGTGTCTCGC+AGG | 0.552782 | tig0033647:-27035 | None:intergenic |
| GTGCCGGCGGTTCAACTGAT+CGG | 0.557681 | tig0033647:+27005 | Msa1451990:CDS |
| CTGGTTTGGGTGGGATGATG+CGG | 0.557941 | tig0033647:+27758 | Msa1451990:CDS |
| CTGGTTTCAGCCTGTGCCGG+CGG | 0.561067 | tig0033647:+26992 | Msa1451990:CDS |
| TTCAAAAGCGCGTGATAGCA+CGG | 0.567098 | tig0033647:+27669 | Msa1451990:CDS |
| TCATCATCCCGATTCTCCGC+CGG | 0.570450 | tig0033647:+27090 | Msa1451990:CDS |
| TTTCCGATCAGTTGAACCGC+CGG | 0.577458 | tig0033647:-27008 | None:intergenic |
| TCTCAAGGATATGCTACAAG+TGG | 0.579670 | tig0033647:+26964 | None:intergenic |
| ATCACCGAAAGTGTCTTGCA+TGG | 0.582694 | tig0033647:+27420 | Msa1451990:CDS |
| ACAAGCCGACGATCTCAAAA+CGG | 0.592406 | tig0033647:+27045 | Msa1451990:CDS |
| TCACCGAAAGTGTCTTGCAT+GGG | 0.596284 | tig0033647:+27421 | Msa1451990:CDS |
| ACGAAGATTCTTAGCGTCGA+AGG | 0.596920 | tig0033647:-27323 | None:intergenic |
| GACGAGAAACAGCGTATCGG+AGG | 0.603677 | tig0033647:+27726 | Msa1451990:CDS |
| GCGTCGAAGGAAGGTTTCTG+AGG | 0.608308 | tig0033647:-27310 | None:intergenic |
| GTGGAAGGAATAAACATGAT+CGG | 0.609068 | tig0033647:+27584 | Msa1451990:CDS |
| TGCGGTTCACGTCTGGAAGA+CGG | 0.620278 | tig0033647:+27776 | Msa1451990:CDS |
| GAACGCAAAGTATCAACCAA+AGG | 0.624704 | tig0033647:+27172 | Msa1451990:CDS |
| GTTTATTCCTTCCACCGGAG+CGG | 0.629764 | tig0033647:-27576 | None:intergenic |
| TATGCTACAAGTGGAAACAC+TGG | 0.636979 | tig0033647:+26973 | None:intergenic |
| ACGAATACTATCTTGACACG+TGG | 0.641215 | tig0033647:-27828 | None:intergenic |
| AACAAACGATTTCCCAACGG+AGG | 0.643622 | tig0033647:-27389 | None:intergenic |
| AAGACGGTCTGAGTCGTGGG+TGG | 0.657734 | tig0033647:+27792 | Msa1451990:CDS |
| TGATGATGAGAGGATTCCGG+TGG | 0.659739 | tig0033647:-27073 | None:intergenic |
| GGTGACGAGAAACAGCGTAT+CGG | 0.661202 | tig0033647:+27723 | Msa1451990:CDS |
| AGAATCGGGATGATGATGAG+AGG | 0.662087 | tig0033647:-27083 | None:intergenic |
| TTCAACAAACGATTTCCCAA+CGG | 0.663139 | tig0033647:-27392 | None:intergenic |
| ACGAGAAACAGCGTATCGGA+GGG | 0.675020 | tig0033647:+27727 | Msa1451990:CDS |
| CCAGAGATGAAGAAAACGAG+TGG | 0.676074 | tig0033647:+27128 | Msa1451990:CDS |
| GAGAGCCAGAATGATTCCGG+CGG | 0.678279 | tig0033647:-27106 | None:intergenic |
| ATCATCCCACCCAAACCAGG+CGG | 0.701016 | tig0033647:-27754 | None:intergenic |
| GGAAAAGTCAGATCTAAACG+CGG | 0.786700 | tig0033647:+27442 | Msa1451990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TGTTGAACTTGAATTTCCTT+TGG | - | tig0033647:27191-27210 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | tig0033647:27222-27241 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | tig0033647:27358-27377 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | tig0033647:27527-27546 | None:intergenic | 30.0% |
| TGTTGAACTTGAATTTCCTT+TGG | - | tig0033647:27191-27210 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | tig0033647:27222-27241 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | tig0033647:27358-27377 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | tig0033647:27527-27546 | None:intergenic | 30.0% |
| GTCGAATTGGAATTGGAATT+AGG | - | tig0033647:27223-27242 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | tig0033647:27395-27414 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | tig0033647:27584-27603 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | tig0033647:27584-27603 | Msa1451990:CDS | 35.0% | |
| GTCGAATTGGAATTGGAATT+AGG | - | tig0033647:27223-27242 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | tig0033647:27395-27414 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | tig0033647:27584-27603 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | tig0033647:27584-27603 | Msa1451990:CDS | 35.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | tig0033647:27132-27151 | Msa1451990:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | tig0033647:27172-27191 | Msa1451990:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | tig0033647:27230-27249 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | tig0033647:27277-27296 | Msa1451990:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | tig0033647:27307-27326 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | tig0033647:27427-27446 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | tig0033647:27442-27461 | Msa1451990:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | tig0033647:27503-27522 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | tig0033647:27600-27619 | Msa1451990:CDS | 40.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | tig0033647:27132-27151 | Msa1451990:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | tig0033647:27172-27191 | Msa1451990:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | tig0033647:27230-27249 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | tig0033647:27277-27296 | Msa1451990:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | tig0033647:27307-27326 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | tig0033647:27427-27446 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | tig0033647:27442-27461 | Msa1451990:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | tig0033647:27503-27522 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | tig0033647:27600-27619 | Msa1451990:CDS | 40.0% | |
| ACAAGCCGACGATCTCAAAA+CGG | + | tig0033647:27045-27064 | Msa1451990:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | tig0033647:27053-27072 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | tig0033647:27079-27098 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | tig0033647:27086-27105 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | tig0033647:27131-27150 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | tig0033647:27128-27147 | Msa1451990:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | tig0033647:27236-27255 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | tig0033647:27254-27273 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | tig0033647:27322-27341 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | tig0033647:27326-27345 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | tig0033647:27392-27411 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | tig0033647:27418-27437 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | tig0033647:27420-27439 | Msa1451990:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | tig0033647:27421-27440 | Msa1451990:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | tig0033647:27494-27513 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | tig0033647:27495-27514 | Msa1451990:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | tig0033647:27562-27581 | Msa1451990:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | tig0033647:27669-27688 | Msa1451990:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | tig0033647:27696-27715 | Msa1451990:CDS | 45.0% |
| ACAAGCCGACGATCTCAAAA+CGG | + | tig0033647:27045-27064 | Msa1451990:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | tig0033647:27053-27072 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | tig0033647:27079-27098 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | tig0033647:27086-27105 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | tig0033647:27131-27150 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | tig0033647:27128-27147 | Msa1451990:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | tig0033647:27236-27255 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | tig0033647:27254-27273 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | tig0033647:27322-27341 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | tig0033647:27326-27345 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | tig0033647:27392-27411 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | tig0033647:27418-27437 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | tig0033647:27420-27439 | Msa1451990:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | tig0033647:27421-27440 | Msa1451990:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | tig0033647:27494-27513 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | tig0033647:27495-27514 | Msa1451990:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | tig0033647:27562-27581 | Msa1451990:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | tig0033647:27669-27688 | Msa1451990:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | tig0033647:27696-27715 | Msa1451990:CDS | 45.0% |
| TTTCCGATCAGTTGAACCGC+CGG | - | tig0033647:27011-27030 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | tig0033647:27057-27076 | Msa1451990:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | tig0033647:27076-27095 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | tig0033647:27100-27119 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | tig0033647:27101-27120 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | tig0033647:27101-27120 | Msa1451990:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | tig0033647:27112-27131 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | tig0033647:27500-27519 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | tig0033647:27579-27598 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | tig0033647:27606-27625 | Msa1451990:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | tig0033647:27702-27721 | Msa1451990:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | tig0033647:27723-27742 | Msa1451990:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | tig0033647:27727-27746 | Msa1451990:CDS | 50.0% | |
| TTTCCGATCAGTTGAACCGC+CGG | - | tig0033647:27011-27030 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | tig0033647:27057-27076 | Msa1451990:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | tig0033647:27076-27095 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | tig0033647:27100-27119 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | tig0033647:27101-27120 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | tig0033647:27101-27120 | Msa1451990:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | tig0033647:27112-27131 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | tig0033647:27500-27519 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | tig0033647:27579-27598 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | tig0033647:27606-27625 | Msa1451990:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | tig0033647:27702-27721 | Msa1451990:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | tig0033647:27723-27742 | Msa1451990:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | tig0033647:27727-27746 | Msa1451990:CDS | 50.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | tig0033647:26989-27008 | Msa1451990:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | tig0033647:27073-27092 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | tig0033647:27090-27109 | Msa1451990:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | tig0033647:27109-27128 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | tig0033647:27313-27332 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | tig0033647:27569-27588 | Msa1451990:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | tig0033647:27726-27745 | Msa1451990:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | tig0033647:27757-27776 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | tig0033647:27758-27777 | Msa1451990:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | tig0033647:27776-27795 | Msa1451990:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | tig0033647:27789-27808 | Msa1451990:CDS | 55.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | tig0033647:26989-27008 | Msa1451990:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | tig0033647:27073-27092 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | tig0033647:27090-27109 | Msa1451990:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | tig0033647:27109-27128 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | tig0033647:27313-27332 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | tig0033647:27569-27588 | Msa1451990:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | tig0033647:27726-27745 | Msa1451990:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | tig0033647:27757-27776 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | tig0033647:27758-27777 | Msa1451990:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | tig0033647:27776-27795 | Msa1451990:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | tig0033647:27789-27808 | Msa1451990:CDS | 55.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | tig0033647:27005-27024 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | tig0033647:27005-27024 | Msa1451990:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | tig0033647:27038-27057 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | tig0033647:27377-27396 | Msa1451990:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | tig0033647:27488-27507 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | tig0033647:27565-27584 | Msa1451990:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | tig0033647:27745-27764 | Msa1451990:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | tig0033647:27749-27768 | Msa1451990:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | tig0033647:27760-27779 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | tig0033647:27769-27788 | Msa1451990:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | tig0033647:27788-27807 | Msa1451990:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | tig0033647:27792-27811 | Msa1451990:CDS | 60.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | tig0033647:27005-27024 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | tig0033647:27005-27024 | Msa1451990:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | tig0033647:27038-27057 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | tig0033647:27377-27396 | Msa1451990:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | tig0033647:27488-27507 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | tig0033647:27565-27584 | Msa1451990:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | tig0033647:27745-27764 | Msa1451990:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | tig0033647:27749-27768 | Msa1451990:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | tig0033647:27760-27779 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | tig0033647:27769-27788 | Msa1451990:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | tig0033647:27788-27807 | Msa1451990:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | tig0033647:27792-27811 | Msa1451990:CDS | 60.0% | |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | tig0033647:26992-27011 | Msa1451990:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | tig0033647:27379-27398 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | tig0033647:27376-27395 | Msa1451990:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | tig0033647:27739-27758 | Msa1451990:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | tig0033647:27744-27763 | Msa1451990:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | tig0033647:27748-27767 | Msa1451990:CDS | 65.0% |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | tig0033647:26992-27011 | Msa1451990:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | tig0033647:27379-27398 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | tig0033647:27376-27395 | Msa1451990:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | tig0033647:27739-27758 | Msa1451990:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | tig0033647:27744-27763 | Msa1451990:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | tig0033647:27748-27767 | Msa1451990:CDS | 65.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | tig0033647:27476-27495 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | tig0033647:27479-27498 | None:intergenic | 70.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | tig0033647:27476-27495 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | tig0033647:27479-27498 | None:intergenic | 70.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | tig0033647:27485-27504 | None:intergenic | 75.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | tig0033647:27485-27504 | None:intergenic | 75.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | tig0033647:27473-27492 | None:intergenic | 80.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | tig0033647:27473-27492 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033647 | gene | 26974 | 27843 | 26974 | ID=Msa1451990;Name=Msa1451990 |
| tig0033647 | mRNA | 26974 | 27843 | 26974 | ID=Msa1451990-mRNA-1;Parent=Msa1451990;Name=Msa1451990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|289 |
| tig0033647 | exon | 26974 | 27843 | 26974 | ID=Msa1451990-mRNA-1:exon:18326;Parent=Msa1451990-mRNA-1 |
| tig0033647 | CDS | 26974 | 27843 | 26974 | ID=Msa1451990-mRNA-1:cds;Parent=Msa1451990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
