Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790920 | XP_013450110.1 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790920 | A0A072U4S0 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa0790920 | 0.814229 | 1.713169e-51 | -8.615850e-47 |
| Msa0043740 | Msa0790920 | 0.833643 | 4.739849e-56 | -8.615850e-47 |
| Msa0059440 | Msa0790920 | 0.804162 | 2.465610e-49 | -8.615850e-47 |
| Msa0090090 | Msa0790920 | 0.843685 | 1.203467e-58 | -8.615850e-47 |
| Msa0090380 | Msa0790920 | 0.816099 | 6.583202e-52 | -8.615850e-47 |
| Msa0094710 | Msa0790920 | 0.813551 | 2.416934e-51 | -8.615850e-47 |
| Msa0608980 | Msa0790920 | 0.817480 | 3.226431e-52 | -8.615850e-47 |
| Msa0615210 | Msa0790920 | 0.806671 | 7.345845e-50 | -8.615850e-47 |
| Msa0619310 | Msa0790920 | 0.803368 | 3.604079e-49 | -8.615850e-47 |
| Msa0650560 | Msa0790920 | 0.819252 | 1.280194e-52 | -8.615850e-47 |
| Msa0704560 | Msa0790920 | 0.809835 | 1.554987e-50 | -8.615850e-47 |
| Msa0704680 | Msa0790920 | 0.804056 | 2.594056e-49 | -8.615850e-47 |
| Msa0740630 | Msa0790920 | 0.828552 | 8.437432e-55 | -8.615850e-47 |
| Msa0744640 | Msa0790920 | 0.802466 | 5.535430e-49 | -8.615850e-47 |
| Msa0790920 | Msa0791740 | 0.821259 | 4.441019e-53 | -8.615850e-47 |
| Msa0790920 | Msa0820880 | 0.829796 | 4.213514e-55 | -8.615850e-47 |
| Msa0790920 | Msa0841730 | 0.803095 | 4.104882e-49 | -8.615850e-47 |
| Msa0790920 | Msa0848440 | 0.812418 | 4.282939e-51 | -8.615850e-47 |
| Msa0790920 | Msa0859040 | 0.819029 | 1.439275e-52 | -8.615850e-47 |
| Msa0790920 | Msa0863990 | 0.807531 | 4.830270e-50 | -8.615850e-47 |
| Msa0790920 | Msa0895620 | 0.819183 | 1.327510e-52 | -8.615850e-47 |
| Msa0790920 | Msa1011250 | 0.811594 | 6.475083e-51 | -8.615850e-47 |
| Msa0790920 | Msa1025750 | 0.809339 | 1.987382e-50 | -8.615850e-47 |
| Msa0790920 | Msa1030240 | 0.801830 | 7.483251e-49 | -8.615850e-47 |
| Msa0790920 | Msa1069890 | 0.805224 | 1.480176e-49 | -8.615850e-47 |
| Msa0790920 | Msa1089190 | 0.810025 | 1.415156e-50 | -8.615850e-47 |
| Msa0790920 | Msa1114670 | 0.821581 | 3.741801e-53 | -8.615850e-47 |
| Msa0790920 | Msa1119920 | 0.827258 | 1.727767e-54 | -8.615850e-47 |
| Msa0790920 | Msa1120580 | 0.800694 | 1.277844e-48 | -8.615850e-47 |
| Msa0790920 | Msa1128790 | 0.818884 | 1.552846e-52 | -8.615850e-47 |
| Msa0790920 | Msa1131790 | 0.806687 | 7.289760e-50 | -8.615850e-47 |
| Msa0790920 | Msa1136760 | 0.840986 | 6.248195e-58 | -8.615850e-47 |
| Msa0790920 | Msa1157110 | 0.810047 | 1.399322e-50 | -8.615850e-47 |
| Msa0790920 | Msa1157670 | 0.807591 | 4.691355e-50 | -8.615850e-47 |
| Msa0790920 | Msa1159170 | 0.813854 | 2.073229e-51 | -8.615850e-47 |
| Msa0790920 | Msa1171450 | 0.985366 | 2.409306e-163 | -8.615850e-47 |
| Msa0790920 | Msa1203810 | 0.836390 | 9.625417e-57 | -8.615850e-47 |
| Msa0790920 | Msa1208990 | 0.808418 | 3.128100e-50 | -8.615850e-47 |
| Msa0790920 | Msa1221220 | 0.803062 | 4.169993e-49 | -8.615850e-47 |
| Msa0790920 | Msa1225580 | 0.821379 | 4.166693e-53 | -8.615850e-47 |
| Msa0790920 | Msa1246790 | 0.819027 | 1.440484e-52 | -8.615850e-47 |
| Msa0790920 | Msa1256060 | 0.830983 | 2.159196e-55 | -8.615850e-47 |
| Msa0790920 | Msa1262540 | 0.806393 | 8.408526e-50 | -8.615850e-47 |
| Msa0790920 | Msa1286220 | 0.801163 | 1.024948e-48 | -8.615850e-47 |
| Msa0790920 | Msa1296240 | 0.849765 | 2.621145e-60 | -8.615850e-47 |
| Msa0790920 | Msa1355510 | 0.823416 | 1.401258e-53 | -8.615850e-47 |
| Msa0790920 | Msa1361710 | 0.826997 | 1.994897e-54 | -8.615850e-47 |
| Msa0790920 | Msa1369320 | 0.832913 | 7.206370e-56 | -8.615850e-47 |
| Msa0790920 | Msa1397390 | 0.805369 | 1.380375e-49 | -8.615850e-47 |
| Msa0790920 | Msa1398140 | 0.822881 | 1.868284e-53 | -8.615850e-47 |
| Msa0790920 | Msa1413800 | 0.805297 | 1.429118e-49 | -8.615850e-47 |
| Msa0790920 | Msa1420940 | 0.833391 | 5.477369e-56 | -8.615850e-47 |
| Msa0790920 | Msa1427000 | 0.805941 | 1.046539e-49 | -8.615850e-47 |
| Msa0790920 | Msa1433410 | 0.816486 | 5.394507e-52 | -8.615850e-47 |
| Msa0790920 | Msa1435320 | 0.802788 | 4.751628e-49 | -8.615850e-47 |
| Msa0790920 | Msa1436090 | 0.802406 | 5.695209e-49 | -8.615850e-47 |
| Msa0790920 | Msa1439780 | 0.810056 | 1.393185e-50 | -8.615850e-47 |
| Msa0790920 | Msa1443400 | 0.805590 | 1.240217e-49 | -8.615850e-47 |
| Msa0790920 | Msa1443620 | 0.802539 | 5.347475e-49 | -8.615850e-47 |
| Msa0790920 | Msa1447880 | 0.816376 | 5.710925e-52 | -8.615850e-47 |
| Msa0790920 | Msa1448040 | 0.804128 | 2.506690e-49 | -8.615850e-47 |
| Msa0790920 | Msa1451990 | 0.996261 | 2.558918e-225 | -8.615850e-47 |
| Msa0790920 | Msa1455200 | 0.815025 | 1.141987e-51 | -8.615850e-47 |
| Msa0137560 | Msa0790920 | 0.846722 | 1.816504e-59 | -8.615850e-47 |
| Msa0137860 | Msa0790920 | 0.814103 | 1.826673e-51 | -8.615850e-47 |
| Msa0150620 | Msa0790920 | 0.815069 | 1.116614e-51 | -8.615850e-47 |
| Msa0162680 | Msa0790920 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa0170770 | Msa0790920 | 0.813949 | 1.975082e-51 | -8.615850e-47 |
| Msa0182560 | Msa0790920 | 0.818691 | 1.717890e-52 | -8.615850e-47 |
| Msa0185100 | Msa0790920 | 0.815307 | 9.886296e-52 | -8.615850e-47 |
| Msa0186240 | Msa0790920 | 0.800109 | 1.681549e-48 | -8.615850e-47 |
| Msa0193190 | Msa0790920 | 0.830556 | 2.747638e-55 | -8.615850e-47 |
| Msa0223140 | Msa0790920 | 0.803974 | 2.697749e-49 | -8.615850e-47 |
| Msa0367860 | Msa0790920 | 0.826543 | 2.561485e-54 | -8.615850e-47 |
| Msa0393100 | Msa0790920 | 0.802073 | 6.670495e-49 | -8.615850e-47 |
| Msa0415640 | Msa0790920 | 0.815916 | 7.235911e-52 | -8.615850e-47 |
| Msa0434300 | Msa0790920 | 0.800777 | 1.229010e-48 | -8.615850e-47 |
| Msa0434400 | Msa0790920 | 0.809429 | 1.900743e-50 | -8.615850e-47 |
| Msa0460600 | Msa0790920 | 0.817019 | 4.097740e-52 | -8.615850e-47 |
| Msa0264680 | Msa0790920 | 0.822762 | 1.991632e-53 | -8.615850e-47 |
| Msa0273070 | Msa0790920 | 0.825377 | 4.845975e-54 | -8.615850e-47 |
| Msa0296910 | Msa0790920 | 0.820904 | 5.359595e-53 | -8.615850e-47 |
| Msa0302510 | Msa0790920 | 0.807893 | 4.047162e-50 | -8.615850e-47 |
| Msa0302730 | Msa0790920 | 0.823977 | 1.035875e-53 | -8.615850e-47 |
| Msa0306310 | Msa0790920 | 0.800120 | 1.672562e-48 | -8.615850e-47 |
| Msa0307420 | Msa0790920 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0335070 | Msa0790920 | 0.815672 | 8.198469e-52 | -8.615850e-47 |
| Msa0339720 | Msa0790920 | 0.800628 | 1.318278e-48 | -8.615850e-47 |
| Msa0345980 | Msa0790920 | 0.816684 | 4.871064e-52 | -8.615850e-47 |
| Msa0488580 | Msa0790920 | 0.812670 | 3.771438e-51 | -8.615850e-47 |
| Msa0517270 | Msa0790920 | 0.815023 | 1.143086e-51 | -8.615850e-47 |
| Msa0522170 | Msa0790920 | 0.804630 | 1.970203e-49 | -8.615850e-47 |
| Msa0534270 | Msa0790920 | 0.833383 | 5.504831e-56 | -8.615850e-47 |
| Msa0561300 | Msa0790920 | 0.815450 | 9.190148e-52 | -8.615850e-47 |
| Msa0584580 | Msa0790920 | 0.804908 | 1.723166e-49 | -8.615850e-47 |
| Msa0584600 | Msa0790920 | 0.822387 | 2.434317e-53 | -8.615850e-47 |
| Msa0588710 | Msa0790920 | 0.811881 | 5.609106e-51 | -8.615850e-47 |
| Msa0592660 | Msa0790920 | 0.807938 | 3.958265e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790920 | MtrunA17_Chr7g0266411 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Msa0790920 | MtrunA17_Chr1g0178531 | 43.871 | 310 | 119 | 14 | 1 | 287 | 3 | 280 | 5.27e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790920 | AT3G52710.1 | 41.447 | 304 | 133 | 12 | 5 | 281 | 3 | 288 | 6.41e-49 | 164 |
| Msa0790920 | AT2G36220.1 | 40.702 | 285 | 128 | 12 | 2 | 277 | 4 | 256 | 6.28e-40 | 140 |
Find 75 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAATTGGAATTGGAATT+AGG | 0.193499 | 5_3:-1733944 | None:intergenic |
| ATTCTCCGCCGGAATCATTC+TGG | 0.318910 | 5_3:+1733825 | Msa0790920:CDS |
| TCGAATTGGAATTGGAATTA+GGG | 0.319492 | 5_3:-1733943 | None:intergenic |
| AAGGAAGGTTTCTGAGGTTT+AGG | 0.324775 | 5_3:-1734028 | None:intergenic |
| GAGGGTGAACCGCCTGGTTT+GGG | 0.327472 | 5_3:+1734469 | Msa0790920:CDS |
| GGAGGGTGAACCGCCTGGTT+TGG | 0.332813 | 5_3:+1734468 | Msa0790920:CDS |
| CGACGTGTCGTTTGTGGAAT+CGG | 0.337131 | 5_3:+1734426 | Msa0790920:CDS |
| CTTAAACGACGTGTCGTTTG+TGG | 0.368356 | 5_3:+1734420 | Msa0790920:CDS |
| GGCTTTGGCTGCGGCGGTGA+CGG | 0.374114 | 5_3:-1734200 | None:intergenic |
| AATGATTCCGGCGGAGAATC+GGG | 0.385576 | 5_3:-1733821 | None:intergenic |
| AAATCGAAGACGTCGATGAT+TGG | 0.397400 | 5_3:+1734001 | Msa0790920:CDS |
| CTGGAGAGCCAGAATGATTC+CGG | 0.399676 | 5_3:-1733833 | None:intergenic |
| CCAACGGAGGCGCTTCGCTT+TGG | 0.403150 | 5_3:-1734100 | None:intergenic |
| TGTTGAACTTGAATTTCCTT+TGG | 0.404679 | 5_3:-1733912 | None:intergenic |
| GGGATGATGCGGTTCACGTC+TGG | 0.406943 | 5_3:+1734493 | Msa0790920:CDS |
| AGTCGAAGTCGAATTGGAAT+TGG | 0.409214 | 5_3:-1733951 | None:intergenic |
| TTTCCCATGCAAGACACTTT+CGG | 0.424095 | 5_3:-1734148 | None:intergenic |
| GAATGATTCCGGCGGAGAAT+CGG | 0.431837 | 5_3:-1733822 | None:intergenic |
| GTTGGAAGTCGAAGTCGAAT+TGG | 0.435363 | 5_3:-1733957 | None:intergenic |
| GGATGATGATGAGAGGATTC+CGG | 0.444774 | 5_3:-1733800 | None:intergenic |
| GGCTGCGGCGGTGACGGAGG+AGG | 0.447604 | 5_3:-1734194 | None:intergenic |
| CAAGACACTTTCGGTGATGA+AGG | 0.466166 | 5_3:-1734139 | None:intergenic |
| ATCAGTTGAACCGCCGGCAC+AGG | 0.471514 | 5_3:-1733726 | None:intergenic |
| GAGAAACGATTCTTCGGCGT+TGG | 0.475237 | 5_3:+1734330 | Msa0790920:CDS |
| CACGGCGGCTTTGGCTGCGG+CGG | 0.478127 | 5_3:-1734206 | None:intergenic |
| ATCATGTTTATTCCTTCCAC+CGG | 0.487247 | 5_3:-1734305 | None:intergenic |
| GGTGAACCGCCTGGTTTGGG+TGG | 0.490276 | 5_3:+1734472 | Msa0790920:CDS |
| TTTCACGGCGGCTTTGGCTG+CGG | 0.490475 | 5_3:-1734209 | None:intergenic |
| CGCATCATCCCACCCAAACC+AGG | 0.492634 | 5_3:-1734481 | None:intergenic |
| GGAAACAACTTAATGTTACT+CGG | 0.496570 | 5_3:-1734079 | None:intergenic |
| CAAAGCGAAGCGCCTCCGTT+GGG | 0.503793 | 5_3:+1734101 | Msa0790920:CDS |
| CTGGAAGACGGTCTGAGTCG+TGG | 0.507701 | 5_3:+1734512 | Msa0790920:CDS |
| CCAAAGCGAAGCGCCTCCGT+TGG | 0.522856 | 5_3:+1734100 | Msa0790920:CDS |
| GTATCGGAGGGTGAACCGCC+TGG | 0.524644 | 5_3:+1734463 | Msa0790920:CDS |
| GTGAACCGCCTGGTTTGGGT+GGG | 0.526851 | 5_3:+1734473 | Msa0790920:CDS |
| ATTTGCGAATCGCTGAGAGT+TGG | 0.530028 | 5_3:-1733975 | None:intergenic |
| TGATCGGAGAAACGATTCTT+CGG | 0.530088 | 5_3:+1734324 | Msa0790920:CDS |
| TGGAAGACGGTCTGAGTCGT+GGG | 0.533984 | 5_3:+1734513 | Msa0790920:CDS |
| AGATGAAGAAAACGAGTGGT+TGG | 0.534269 | 5_3:+1733856 | Msa0790920:CDS |
| ACACTGGTTTCAGCCTGTGC+CGG | 0.536079 | 5_3:+1733713 | Msa0790920:CDS |
| TGATGAGAGGATTCCGGTGG+AGG | 0.536818 | 5_3:-1733794 | None:intergenic |
| TTTGGCTGCGGCGGTGACGG+AGG | 0.537701 | 5_3:-1734197 | None:intergenic |
| AGATTCTTAGCGTCGAAGGA+AGG | 0.541094 | 5_3:-1734043 | None:intergenic |
| TCTCAAAACGGATCCTCCAC+CGG | 0.544913 | 5_3:+1733781 | Msa0790920:CDS |
| ATCGTCGGCTTGTGTCTCGC+AGG | 0.552782 | 5_3:-1733759 | None:intergenic |
| GTGCCGGCGGTTCAACTGAT+CGG | 0.557681 | 5_3:+1733729 | Msa0790920:CDS |
| CTGGTTTGGGTGGGATGATG+CGG | 0.557941 | 5_3:+1734482 | Msa0790920:CDS |
| CTGGTTTCAGCCTGTGCCGG+CGG | 0.561067 | 5_3:+1733716 | Msa0790920:CDS |
| TTCAAAAGCGCGTGATAGCA+CGG | 0.567098 | 5_3:+1734393 | Msa0790920:CDS |
| TCATCATCCCGATTCTCCGC+CGG | 0.570450 | 5_3:+1733814 | Msa0790920:CDS |
| TTTCCGATCAGTTGAACCGC+CGG | 0.577458 | 5_3:-1733732 | None:intergenic |
| TCTCAAGGATATGCTACAAG+TGG | 0.579670 | 5_3:+1733688 | None:intergenic |
| ATCACCGAAAGTGTCTTGCA+TGG | 0.582694 | 5_3:+1734144 | Msa0790920:CDS |
| ACAAGCCGACGATCTCAAAA+CGG | 0.592406 | 5_3:+1733769 | Msa0790920:CDS |
| TCACCGAAAGTGTCTTGCAT+GGG | 0.596284 | 5_3:+1734145 | Msa0790920:CDS |
| ACGAAGATTCTTAGCGTCGA+AGG | 0.596920 | 5_3:-1734047 | None:intergenic |
| GACGAGAAACAGCGTATCGG+AGG | 0.603677 | 5_3:+1734450 | Msa0790920:CDS |
| GCGTCGAAGGAAGGTTTCTG+AGG | 0.608308 | 5_3:-1734034 | None:intergenic |
| GTGGAAGGAATAAACATGAT+CGG | 0.609068 | 5_3:+1734308 | Msa0790920:CDS |
| TGCGGTTCACGTCTGGAAGA+CGG | 0.620278 | 5_3:+1734500 | Msa0790920:CDS |
| GAACGCAAAGTATCAACCAA+AGG | 0.624704 | 5_3:+1733896 | Msa0790920:CDS |
| GTTTATTCCTTCCACCGGAG+CGG | 0.629764 | 5_3:-1734300 | None:intergenic |
| TATGCTACAAGTGGAAACAC+TGG | 0.636979 | 5_3:+1733697 | None:intergenic |
| ACGAATACTATCTTGACACG+TGG | 0.641215 | 5_3:-1734552 | None:intergenic |
| AACAAACGATTTCCCAACGG+AGG | 0.643622 | 5_3:-1734113 | None:intergenic |
| AAGACGGTCTGAGTCGTGGG+TGG | 0.657734 | 5_3:+1734516 | Msa0790920:CDS |
| TGATGATGAGAGGATTCCGG+TGG | 0.659739 | 5_3:-1733797 | None:intergenic |
| GGTGACGAGAAACAGCGTAT+CGG | 0.661202 | 5_3:+1734447 | Msa0790920:CDS |
| AGAATCGGGATGATGATGAG+AGG | 0.662087 | 5_3:-1733807 | None:intergenic |
| TTCAACAAACGATTTCCCAA+CGG | 0.663139 | 5_3:-1734116 | None:intergenic |
| ACGAGAAACAGCGTATCGGA+GGG | 0.675020 | 5_3:+1734451 | Msa0790920:CDS |
| CCAGAGATGAAGAAAACGAG+TGG | 0.676074 | 5_3:+1733852 | Msa0790920:CDS |
| GAGAGCCAGAATGATTCCGG+CGG | 0.678279 | 5_3:-1733830 | None:intergenic |
| ATCATCCCACCCAAACCAGG+CGG | 0.701016 | 5_3:-1734478 | None:intergenic |
| GGAAAAGTCAGATCTAAACG+CGG | 0.786700 | 5_3:+1734166 | Msa0790920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TGTTGAACTTGAATTTCCTT+TGG | - | chr5_3:1733915-1733934 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | chr5_3:1733946-1733965 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | chr5_3:1734082-1734101 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | chr5_3:1734251-1734270 | None:intergenic | 30.0% |
| TGTTGAACTTGAATTTCCTT+TGG | - | chr5_3:1733915-1733934 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | chr5_3:1733946-1733965 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | chr5_3:1734082-1734101 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | chr5_3:1734251-1734270 | None:intergenic | 30.0% |
| GTCGAATTGGAATTGGAATT+AGG | - | chr5_3:1733947-1733966 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | chr5_3:1734119-1734138 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | chr5_3:1734308-1734327 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | chr5_3:1734308-1734327 | Msa0790920:CDS | 35.0% | |
| GTCGAATTGGAATTGGAATT+AGG | - | chr5_3:1733947-1733966 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | chr5_3:1734119-1734138 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | chr5_3:1734308-1734327 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | chr5_3:1734308-1734327 | Msa0790920:CDS | 35.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | chr5_3:1733856-1733875 | Msa0790920:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | chr5_3:1733896-1733915 | Msa0790920:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | chr5_3:1733954-1733973 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | chr5_3:1734001-1734020 | Msa0790920:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | chr5_3:1734031-1734050 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | chr5_3:1734151-1734170 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | chr5_3:1734166-1734185 | Msa0790920:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | chr5_3:1734227-1734246 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | chr5_3:1734324-1734343 | Msa0790920:CDS | 40.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | chr5_3:1733856-1733875 | Msa0790920:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | chr5_3:1733896-1733915 | Msa0790920:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | chr5_3:1733954-1733973 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | chr5_3:1734001-1734020 | Msa0790920:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | chr5_3:1734031-1734050 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | chr5_3:1734151-1734170 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | chr5_3:1734166-1734185 | Msa0790920:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | chr5_3:1734227-1734246 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | chr5_3:1734324-1734343 | Msa0790920:CDS | 40.0% | |
| ACAAGCCGACGATCTCAAAA+CGG | + | chr5_3:1733769-1733788 | Msa0790920:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | chr5_3:1733777-1733796 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | chr5_3:1733803-1733822 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | chr5_3:1733810-1733829 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | chr5_3:1733855-1733874 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | chr5_3:1733852-1733871 | Msa0790920:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | chr5_3:1733960-1733979 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | chr5_3:1733978-1733997 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | chr5_3:1734046-1734065 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | chr5_3:1734050-1734069 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | chr5_3:1734116-1734135 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | chr5_3:1734142-1734161 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | chr5_3:1734144-1734163 | Msa0790920:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | chr5_3:1734145-1734164 | Msa0790920:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | chr5_3:1734218-1734237 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | chr5_3:1734219-1734238 | Msa0790920:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | chr5_3:1734286-1734305 | Msa0790920:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | chr5_3:1734393-1734412 | Msa0790920:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | chr5_3:1734420-1734439 | Msa0790920:CDS | 45.0% |
| ACAAGCCGACGATCTCAAAA+CGG | + | chr5_3:1733769-1733788 | Msa0790920:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | chr5_3:1733777-1733796 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | chr5_3:1733803-1733822 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | chr5_3:1733810-1733829 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | chr5_3:1733855-1733874 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | chr5_3:1733852-1733871 | Msa0790920:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | chr5_3:1733960-1733979 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | chr5_3:1733978-1733997 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | chr5_3:1734046-1734065 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | chr5_3:1734050-1734069 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | chr5_3:1734116-1734135 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | chr5_3:1734142-1734161 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | chr5_3:1734144-1734163 | Msa0790920:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | chr5_3:1734145-1734164 | Msa0790920:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | chr5_3:1734218-1734237 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | chr5_3:1734219-1734238 | Msa0790920:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | chr5_3:1734286-1734305 | Msa0790920:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | chr5_3:1734393-1734412 | Msa0790920:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | chr5_3:1734420-1734439 | Msa0790920:CDS | 45.0% |
| TTTCCGATCAGTTGAACCGC+CGG | - | chr5_3:1733735-1733754 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | chr5_3:1733781-1733800 | Msa0790920:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | chr5_3:1733800-1733819 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | chr5_3:1733824-1733843 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | chr5_3:1733825-1733844 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | chr5_3:1733825-1733844 | Msa0790920:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | chr5_3:1733836-1733855 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | chr5_3:1734224-1734243 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | chr5_3:1734303-1734322 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | chr5_3:1734330-1734349 | Msa0790920:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | chr5_3:1734426-1734445 | Msa0790920:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | chr5_3:1734447-1734466 | Msa0790920:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | chr5_3:1734451-1734470 | Msa0790920:CDS | 50.0% | |
| TTTCCGATCAGTTGAACCGC+CGG | - | chr5_3:1733735-1733754 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | chr5_3:1733781-1733800 | Msa0790920:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | chr5_3:1733800-1733819 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | chr5_3:1733824-1733843 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | chr5_3:1733825-1733844 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | chr5_3:1733825-1733844 | Msa0790920:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | chr5_3:1733836-1733855 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | chr5_3:1734224-1734243 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | chr5_3:1734303-1734322 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | chr5_3:1734330-1734349 | Msa0790920:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | chr5_3:1734426-1734445 | Msa0790920:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | chr5_3:1734447-1734466 | Msa0790920:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | chr5_3:1734451-1734470 | Msa0790920:CDS | 50.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | chr5_3:1733713-1733732 | Msa0790920:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | chr5_3:1733797-1733816 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | chr5_3:1733814-1733833 | Msa0790920:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | chr5_3:1733833-1733852 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | chr5_3:1734037-1734056 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | chr5_3:1734293-1734312 | Msa0790920:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | chr5_3:1734450-1734469 | Msa0790920:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | chr5_3:1734481-1734500 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | chr5_3:1734482-1734501 | Msa0790920:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | chr5_3:1734500-1734519 | Msa0790920:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | chr5_3:1734513-1734532 | Msa0790920:CDS | 55.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | chr5_3:1733713-1733732 | Msa0790920:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | chr5_3:1733797-1733816 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | chr5_3:1733814-1733833 | Msa0790920:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | chr5_3:1733833-1733852 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | chr5_3:1734037-1734056 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | chr5_3:1734293-1734312 | Msa0790920:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | chr5_3:1734450-1734469 | Msa0790920:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | chr5_3:1734481-1734500 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | chr5_3:1734482-1734501 | Msa0790920:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | chr5_3:1734500-1734519 | Msa0790920:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | chr5_3:1734513-1734532 | Msa0790920:CDS | 55.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | chr5_3:1733729-1733748 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | chr5_3:1733729-1733748 | Msa0790920:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | chr5_3:1733762-1733781 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | chr5_3:1734101-1734120 | Msa0790920:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | chr5_3:1734212-1734231 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | chr5_3:1734289-1734308 | Msa0790920:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | chr5_3:1734469-1734488 | Msa0790920:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | chr5_3:1734473-1734492 | Msa0790920:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | chr5_3:1734484-1734503 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | chr5_3:1734493-1734512 | Msa0790920:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | chr5_3:1734512-1734531 | Msa0790920:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | chr5_3:1734516-1734535 | Msa0790920:CDS | 60.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | chr5_3:1733729-1733748 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | chr5_3:1733729-1733748 | Msa0790920:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | chr5_3:1733762-1733781 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | chr5_3:1734101-1734120 | Msa0790920:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | chr5_3:1734212-1734231 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | chr5_3:1734289-1734308 | Msa0790920:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | chr5_3:1734469-1734488 | Msa0790920:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | chr5_3:1734473-1734492 | Msa0790920:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | chr5_3:1734484-1734503 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | chr5_3:1734493-1734512 | Msa0790920:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | chr5_3:1734512-1734531 | Msa0790920:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | chr5_3:1734516-1734535 | Msa0790920:CDS | 60.0% | |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | chr5_3:1733716-1733735 | Msa0790920:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | chr5_3:1734103-1734122 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | chr5_3:1734100-1734119 | Msa0790920:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | chr5_3:1734463-1734482 | Msa0790920:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | chr5_3:1734468-1734487 | Msa0790920:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | chr5_3:1734472-1734491 | Msa0790920:CDS | 65.0% |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | chr5_3:1733716-1733735 | Msa0790920:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | chr5_3:1734103-1734122 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | chr5_3:1734100-1734119 | Msa0790920:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | chr5_3:1734463-1734482 | Msa0790920:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | chr5_3:1734468-1734487 | Msa0790920:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | chr5_3:1734472-1734491 | Msa0790920:CDS | 65.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | chr5_3:1734200-1734219 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | chr5_3:1734203-1734222 | None:intergenic | 70.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | chr5_3:1734200-1734219 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | chr5_3:1734203-1734222 | None:intergenic | 70.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | chr5_3:1734209-1734228 | None:intergenic | 75.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | chr5_3:1734209-1734228 | None:intergenic | 75.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | chr5_3:1734197-1734216 | None:intergenic | 80.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | chr5_3:1734197-1734216 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1733698 | 1734567 | 1733698 | ID=Msa0790920;Name=Msa0790920 |
| chr5_3 | mRNA | 1733698 | 1734567 | 1733698 | ID=Msa0790920-mRNA-1;Parent=Msa0790920;Name=Msa0790920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|289 |
| chr5_3 | exon | 1733698 | 1734567 | 1733698 | ID=Msa0790920-mRNA-1:exon:651;Parent=Msa0790920-mRNA-1 |
| chr5_3 | CDS | 1733698 | 1734567 | 1733698 | ID=Msa0790920-mRNA-1:cds;Parent=Msa0790920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
