Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279660 | XP_024633244.2 | 91.954 | 435 | 20 | 2 | 1 | 420 | 104 | 538 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279660 | sp|Q9SA85|BBE8_ARATH | 63.825 | 434 | 132 | 7 | 1 | 416 | 101 | 527 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279660 | A0A396J9I7 | 91.954 | 435 | 20 | 2 | 1 | 420 | 134 | 568 | 0.0 | 797 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037760 | Msa0279660 | 0.815876 | 7.385473e-52 | -8.615850e-47 |
| Msa0090380 | Msa0279660 | 0.816819 | 4.543281e-52 | -8.615850e-47 |
| Msa0137860 | Msa0279660 | 0.804033 | 2.622472e-49 | -8.615850e-47 |
| Msa0139680 | Msa0279660 | 0.804041 | 2.612856e-49 | -8.615850e-47 |
| Msa0224130 | Msa0279660 | 0.805442 | 1.332545e-49 | -8.615850e-47 |
| Msa0265270 | Msa0279660 | 0.806678 | 7.321073e-50 | -8.615850e-47 |
| Msa0279660 | Msa0592660 | 0.827609 | 1.423255e-54 | -8.615850e-47 |
| Msa0279660 | Msa0600590 | 0.803316 | 3.695499e-49 | -8.615850e-47 |
| Msa0279660 | Msa0615210 | 0.806896 | 6.584545e-50 | -8.615850e-47 |
| Msa0279660 | Msa0641130 | 0.807941 | 3.951911e-50 | -8.615850e-47 |
| Msa0279660 | Msa0744640 | 0.837028 | 6.618334e-57 | -8.615850e-47 |
| Msa0279660 | Msa0791740 | 0.802243 | 6.153441e-49 | -8.615850e-47 |
| Msa0279660 | Msa0841730 | 0.836375 | 9.711095e-57 | -8.615850e-47 |
| Msa0279660 | Msa0862620 | 0.800412 | 1.458982e-48 | -8.615850e-47 |
| Msa0279660 | Msa0863990 | 0.827127 | 1.857229e-54 | -8.615850e-47 |
| Msa0279660 | Msa0870510 | 0.802180 | 6.340923e-49 | -8.615850e-47 |
| Msa0279660 | Msa0945130 | 0.815485 | 9.023003e-52 | -8.615850e-47 |
| Msa0279660 | Msa0965910 | 0.812473 | 4.165693e-51 | -8.615850e-47 |
| Msa0279660 | Msa1034450 | 0.822042 | 2.927210e-53 | -8.615850e-47 |
| Msa0279660 | Msa1069890 | 0.803288 | 3.744929e-49 | -8.615850e-47 |
| Msa0279660 | Msa1074200 | 0.827226 | 1.758582e-54 | -8.615850e-47 |
| Msa0279660 | Msa1089190 | 0.807222 | 5.616209e-50 | -8.615850e-47 |
| Msa0279660 | Msa1114670 | 0.817423 | 3.323832e-52 | -8.615850e-47 |
| Msa0279660 | Msa1133700 | 0.811478 | 6.863379e-51 | -8.615850e-47 |
| Msa0279660 | Msa1159170 | 0.824030 | 1.006511e-53 | -8.615850e-47 |
| Msa0279660 | Msa1221220 | 0.808684 | 2.744925e-50 | -8.615850e-47 |
| Msa0279660 | Msa1238600 | 0.800015 | 1.756910e-48 | -8.615850e-47 |
| Msa0279660 | Msa1255210 | 0.800313 | 1.527940e-48 | -8.615850e-47 |
| Msa0279660 | Msa1256060 | 0.808867 | 2.507818e-50 | -8.615850e-47 |
| Msa0279660 | Msa1296240 | 0.806573 | 7.705343e-50 | -8.615850e-47 |
| Msa0279660 | Msa1364080 | 0.809950 | 1.468340e-50 | -8.615850e-47 |
| Msa0279660 | Msa1433410 | 0.817386 | 3.387129e-52 | -8.615850e-47 |
| Msa0279660 | Msa1443620 | 0.824536 | 7.656098e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279660 | MtrunA17_Chr2g0293191 | 91.954 | 435 | 20 | 2 | 1 | 420 | 134 | 568 | 0.0 | 797 |
| Msa0279660 | MtrunA17_Chr2g0293161 | 91.724 | 435 | 21 | 2 | 1 | 420 | 103 | 537 | 0.0 | 796 |
| Msa0279660 | MtrunA17_Chr2g0293121 | 73.488 | 430 | 95 | 3 | 1 | 415 | 98 | 523 | 0.0 | 669 |
| Msa0279660 | MtrunA17_Chr2g0293031 | 61.009 | 436 | 148 | 4 | 1 | 418 | 110 | 541 | 0.0 | 526 |
| Msa0279660 | MtrunA17_Chr2g0293041 | 61.327 | 437 | 145 | 5 | 1 | 418 | 112 | 543 | 0.0 | 524 |
| Msa0279660 | MtrunA17_Chr4g0051531 | 58.102 | 432 | 164 | 2 | 1 | 418 | 727 | 1155 | 1.68e-170 | 508 |
| Msa0279660 | MtrunA17_Chr4g0051531 | 58.352 | 437 | 161 | 3 | 1 | 420 | 113 | 545 | 1.05e-166 | 498 |
| Msa0279660 | MtrunA17_Chr4g0051441 | 52.688 | 465 | 169 | 3 | 1 | 420 | 161 | 619 | 1.04e-166 | 482 |
| Msa0279660 | MtrunA17_Chr4g0051211 | 52.523 | 436 | 183 | 5 | 1 | 415 | 39 | 471 | 1.26e-166 | 477 |
| Msa0279660 | MtrunA17_Chr2g0292971 | 51.389 | 432 | 190 | 4 | 1 | 416 | 103 | 530 | 2.06e-162 | 468 |
| Msa0279660 | MtrunA17_Chr4g0051541 | 50.926 | 432 | 192 | 4 | 1 | 416 | 104 | 531 | 1.51e-158 | 457 |
| Msa0279660 | MtrunA17_Chr6g0457061 | 53.364 | 431 | 179 | 5 | 1 | 414 | 100 | 525 | 1.55e-158 | 458 |
| Msa0279660 | MtrunA17_Chr4g0048361 | 52.900 | 431 | 181 | 5 | 1 | 414 | 100 | 525 | 3.77e-158 | 456 |
| Msa0279660 | MtrunA17_Chr4g0046581 | 52.414 | 435 | 185 | 5 | 1 | 418 | 107 | 536 | 7.10e-158 | 456 |
| Msa0279660 | MtrunA17_Chr6g0457031 | 52.900 | 431 | 181 | 5 | 1 | 414 | 100 | 525 | 2.35e-157 | 455 |
| Msa0279660 | MtrunA17_Chr4g0048351 | 51.034 | 435 | 189 | 5 | 1 | 418 | 117 | 544 | 5.82e-156 | 451 |
| Msa0279660 | MtrunA17_Chr3g0079801 | 50.463 | 432 | 192 | 4 | 1 | 417 | 100 | 524 | 7.90e-156 | 450 |
| Msa0279660 | MtrunA17_Chr4g0048311 | 52.074 | 434 | 184 | 6 | 1 | 415 | 112 | 540 | 1.14e-154 | 448 |
| Msa0279660 | MtrunA17_Chr3g0079791 | 50.575 | 435 | 187 | 5 | 1 | 417 | 100 | 524 | 1.44e-154 | 447 |
| Msa0279660 | MtrunA17_Chr4g0028611 | 51.508 | 431 | 184 | 5 | 1 | 414 | 128 | 550 | 5.13e-154 | 447 |
| Msa0279660 | MtrunA17_Chr4g0051411 | 52.184 | 435 | 189 | 4 | 1 | 418 | 106 | 538 | 9.58e-154 | 446 |
| Msa0279660 | MtrunA17_Chr3g0079831 | 49.885 | 433 | 193 | 5 | 1 | 417 | 114 | 538 | 2.90e-153 | 445 |
| Msa0279660 | MtrunA17_Chr4g0051551 | 50.463 | 432 | 193 | 4 | 1 | 416 | 133 | 559 | 8.01e-152 | 441 |
| Msa0279660 | MtrunA17_Chr4g0051381 | 52.083 | 432 | 188 | 4 | 1 | 415 | 106 | 535 | 4.57e-150 | 436 |
| Msa0279660 | MtrunA17_Chr4g0051421 | 52.900 | 431 | 186 | 3 | 1 | 414 | 106 | 536 | 1.70e-149 | 451 |
| Msa0279660 | MtrunA17_Chr4g0051421 | 50.228 | 438 | 194 | 6 | 1 | 418 | 645 | 1078 | 5.10e-141 | 429 |
| Msa0279660 | MtrunA17_Chr2g0292991 | 50.117 | 429 | 193 | 6 | 1 | 415 | 106 | 527 | 1.71e-146 | 427 |
| Msa0279660 | MtrunA17_Chr2g0288611 | 48.970 | 437 | 199 | 5 | 1 | 420 | 42 | 471 | 2.36e-145 | 422 |
| Msa0279660 | MtrunA17_Chr2g0293021 | 49.078 | 434 | 200 | 5 | 1 | 420 | 106 | 532 | 8.50e-144 | 420 |
| Msa0279660 | MtrunA17_Chr4g0048331 | 44.769 | 411 | 193 | 7 | 19 | 414 | 1 | 392 | 7.55e-129 | 377 |
| Msa0279660 | MtrunA17_Chr1g0188271 | 39.352 | 432 | 236 | 6 | 1 | 412 | 107 | 532 | 1.76e-95 | 296 |
| Msa0279660 | MtrunA17_Chr3g0079821 | 48.458 | 227 | 116 | 1 | 193 | 418 | 5 | 231 | 3.06e-74 | 231 |
| Msa0279660 | MtrunA17_Chr2g0320381 | 55.072 | 69 | 27 | 1 | 65 | 133 | 48 | 112 | 1.20e-22 | 92.4 |
| Msa0279660 | MtrunA17_Chr2g0320371 | 55.556 | 45 | 20 | 0 | 23 | 67 | 1 | 45 | 7.11e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279660 | AT1G30700.1 | 63.825 | 434 | 132 | 7 | 1 | 416 | 101 | 527 | 0.0 | 536 |
| Msa0279660 | AT1G30710.1 | 55.505 | 436 | 163 | 6 | 1 | 417 | 107 | 530 | 1.17e-165 | 476 |
| Msa0279660 | AT1G11770.1 | 54.128 | 436 | 177 | 4 | 1 | 420 | 106 | 534 | 3.20e-165 | 475 |
| Msa0279660 | AT1G01980.1 | 56.335 | 442 | 163 | 7 | 1 | 420 | 106 | 539 | 3.93e-164 | 473 |
| Msa0279660 | AT1G34575.1 | 53.670 | 436 | 172 | 6 | 1 | 418 | 104 | 527 | 2.99e-163 | 470 |
| Msa0279660 | AT4G20840.1 | 54.608 | 434 | 174 | 5 | 1 | 418 | 112 | 538 | 3.11e-163 | 470 |
| Msa0279660 | AT1G30720.1 | 52.570 | 428 | 182 | 4 | 1 | 413 | 103 | 524 | 3.90e-155 | 449 |
| Msa0279660 | AT1G30730.1 | 51.636 | 428 | 186 | 4 | 1 | 413 | 102 | 523 | 3.63e-154 | 446 |
| Msa0279660 | AT1G26420.1 | 52.103 | 428 | 183 | 5 | 1 | 413 | 103 | 523 | 4.43e-153 | 444 |
| Msa0279660 | AT4G20830.2 | 53.226 | 434 | 180 | 5 | 1 | 418 | 113 | 539 | 5.74e-153 | 444 |
| Msa0279660 | AT4G20830.1 | 53.103 | 435 | 181 | 5 | 1 | 419 | 113 | 540 | 4.17e-152 | 443 |
| Msa0279660 | AT5G44400.1 | 49.078 | 434 | 195 | 7 | 1 | 415 | 110 | 536 | 1.29e-151 | 441 |
| Msa0279660 | AT1G26400.1 | 51.157 | 432 | 188 | 5 | 1 | 418 | 103 | 525 | 2.49e-150 | 437 |
| Msa0279660 | AT1G26380.1 | 51.501 | 433 | 188 | 5 | 1 | 418 | 103 | 528 | 6.98e-150 | 436 |
| Msa0279660 | AT1G26390.1 | 52.448 | 429 | 182 | 4 | 1 | 413 | 103 | 525 | 1.47e-149 | 435 |
| Msa0279660 | AT1G26410.1 | 51.860 | 430 | 185 | 5 | 1 | 415 | 127 | 549 | 1.14e-148 | 433 |
| Msa0279660 | AT1G30760.1 | 50.000 | 430 | 191 | 5 | 1 | 414 | 110 | 531 | 2.06e-148 | 432 |
| Msa0279660 | AT1G30760.2 | 50.000 | 430 | 191 | 5 | 1 | 414 | 128 | 549 | 2.29e-148 | 432 |
| Msa0279660 | AT1G30740.2 | 52.055 | 438 | 183 | 7 | 1 | 419 | 106 | 535 | 1.11e-145 | 425 |
| Msa0279660 | AT1G30740.1 | 52.055 | 438 | 183 | 7 | 1 | 419 | 103 | 532 | 1.11e-145 | 425 |
| Msa0279660 | AT2G34790.1 | 46.744 | 430 | 205 | 5 | 1 | 414 | 108 | 529 | 5.22e-144 | 421 |
| Msa0279660 | AT5G44390.1 | 48.741 | 437 | 196 | 8 | 1 | 416 | 112 | 541 | 6.23e-144 | 421 |
| Msa0279660 | AT5G44380.1 | 48.736 | 435 | 197 | 7 | 1 | 416 | 113 | 540 | 1.12e-140 | 412 |
| Msa0279660 | AT4G20860.1 | 47.674 | 430 | 203 | 4 | 1 | 415 | 107 | 529 | 1.85e-140 | 412 |
| Msa0279660 | AT5G44380.2 | 48.736 | 435 | 197 | 7 | 1 | 416 | 153 | 580 | 2.10e-140 | 413 |
| Msa0279660 | AT2G34810.1 | 48.966 | 435 | 198 | 5 | 1 | 415 | 109 | 539 | 1.42e-139 | 410 |
| Msa0279660 | AT4G20800.1 | 48.832 | 428 | 198 | 4 | 1 | 413 | 102 | 523 | 3.55e-139 | 408 |
| Msa0279660 | AT5G44360.1 | 48.148 | 432 | 196 | 6 | 1 | 415 | 110 | 530 | 3.42e-137 | 404 |
| Msa0279660 | AT5G44360.2 | 48.148 | 432 | 196 | 6 | 1 | 415 | 126 | 546 | 5.17e-137 | 404 |
| Msa0279660 | AT4G20820.1 | 47.209 | 430 | 195 | 8 | 1 | 413 | 110 | 524 | 3.16e-131 | 388 |
| Msa0279660 | AT5G44440.1 | 44.931 | 434 | 208 | 7 | 1 | 413 | 104 | 527 | 6.51e-126 | 375 |
| Msa0279660 | AT5G44440.2 | 44.931 | 434 | 208 | 7 | 1 | 413 | 174 | 597 | 5.18e-125 | 375 |
| Msa0279660 | AT5G44410.1 | 45.767 | 437 | 200 | 9 | 1 | 415 | 108 | 529 | 2.93e-124 | 370 |
Find 80 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATAGGGCTGGAAATTTA+TGG | 0.162828 | 2_3:+13711362 | Msa0279660:CDS |
| TACAATGAAGGAAGAGTTTA+TGG | 0.181006 | 2_3:+13711562 | Msa0279660:CDS |
| ACAATGGTGCAAAGACTATT+AGG | 0.202238 | 2_3:+13710987 | Msa0279660:CDS |
| GAAAGCCTCTCTTGGATTCT+TGG | 0.222918 | 2_3:-13711488 | None:intergenic |
| AGAGGCTTTCTTTAATTATA+AGG | 0.230203 | 2_3:+13711501 | Msa0279660:CDS |
| AAACTATGTCACTTGCATTT+TGG | 0.230592 | 2_3:-13710874 | None:intergenic |
| TAATTATAAGGATCTTGATT+TGG | 0.263816 | 2_3:+13711513 | Msa0279660:CDS |
| TTGATCCTCACAATTTCTTT+AGG | 0.266430 | 2_3:+13711638 | Msa0279660:CDS |
| CAAGTGACATAGTTTATAAT+TGG | 0.268341 | 2_3:+13710882 | Msa0279660:CDS |
| GGAAGGGTTTGCAGGGGATT+TGG | 0.290129 | 2_3:+13711248 | Msa0279660:CDS |
| GCACAAATTATCGATGTTAA+TGG | 0.303291 | 2_3:+13710633 | Msa0279660:CDS |
| CATTTAAGTGGTGGTGGATA+TGG | 0.310668 | 2_3:+13710564 | Msa0279660:CDS |
| AATTATAAGGATCTTGATTT+GGG | 0.321610 | 2_3:+13711514 | Msa0279660:CDS |
| TCCATAAATTTCCAGCCCTA+TGG | 0.364163 | 2_3:-13711363 | None:intergenic |
| TGCAAACCCTTCCTCGAAAT+CGG | 0.367513 | 2_3:-13711238 | None:intergenic |
| TTGATAATGACCTATTCATT+AGG | 0.367845 | 2_3:+13710924 | Msa0279660:CDS |
| GGTAACATGATGAGAAAATA+TGG | 0.369499 | 2_3:+13710585 | Msa0279660:CDS |
| ATTTCCTCAATTGGGTTTGA+AGG | 0.382891 | 2_3:+13711072 | Msa0279660:CDS |
| GATTTGGGAATTAATCATAA+TGG | 0.383034 | 2_3:+13711529 | Msa0279660:CDS |
| TCAGCCATTCTTCCACCATA+TGG | 0.391139 | 2_3:-13711313 | None:intergenic |
| AGGTTCAATATCAAGCAAAT+TGG | 0.392754 | 2_3:+13711386 | Msa0279660:CDS |
| GTTGTAAATGTTACACAAAA+TGG | 0.404678 | 2_3:+13710959 | Msa0279660:CDS |
| GATTTCGAGGAAGGGTTTGC+AGG | 0.407411 | 2_3:+13711240 | Msa0279660:CDS |
| CCATAAATTTCCAGCCCTAT+GGG | 0.418055 | 2_3:-13711362 | None:intergenic |
| CTTGGATTCTTGGACACAAA+AGG | 0.418750 | 2_3:-13711478 | None:intergenic |
| CAATAATAAGCCTAATGAAT+AGG | 0.423030 | 2_3:-13710934 | None:intergenic |
| ATATTATATTTCAATCCATA+TGG | 0.427967 | 2_3:+13711298 | Msa0279660:CDS |
| CAATGGTGCAAAGACTATTA+GGG | 0.429921 | 2_3:+13710988 | Msa0279660:CDS |
| TAATTAAAGAAAGCCTCTCT+TGG | 0.432560 | 2_3:-13711496 | None:intergenic |
| CTTTCCTTCAAACCCAATTG+AGG | 0.442877 | 2_3:-13711076 | None:intergenic |
| TGGGCTATTAAAGGTGGTGG+TGG | 0.445066 | 2_3:+13710696 | Msa0279660:CDS |
| GTGATTGCATTGAAACAAGT+TGG | 0.451363 | 2_3:+13711098 | Msa0279660:CDS |
| GGGAAAGGTGTATCTGTTGA+TGG | 0.459847 | 2_3:-13711340 | None:intergenic |
| TGAAACAAGTTGGCTTCAAT+CGG | 0.460590 | 2_3:+13711108 | Msa0279660:CDS |
| TTGGAAGAAGATGATTGAGT+TGG | 0.464636 | 2_3:+13711267 | Msa0279660:CDS |
| GCATACCTACTCTGCCTAGT+AGG | 0.464826 | 2_3:+13711671 | Msa0279660:CDS |
| GATGTTGCTGATCATTACAT+AGG | 0.469569 | 2_3:+13711424 | Msa0279660:CDS |
| AAATGGAACTTCAGCTACAT+AGG | 0.477639 | 2_3:-13710373 | None:intergenic |
| ATGTAAAGAAACCGATTTCG+AGG | 0.480068 | 2_3:+13711227 | Msa0279660:CDS |
| CAATATCGATATTACAAAAC+CGG | 0.487503 | 2_3:+13711144 | Msa0279660:CDS |
| AATAGGTCATTATCAATAGT+TGG | 0.489739 | 2_3:-13710917 | None:intergenic |
| GGTGGTGGTGGAGCTAGCTT+TGG | 0.502190 | 2_3:+13710708 | Msa0279660:CDS |
| TGTCCTACCGTTGGTGTTGG+AGG | 0.502276 | 2_3:+13710540 | Msa0279660:CDS |
| CAATCCATATGGTGGAAGAA+TGG | 0.503366 | 2_3:+13711309 | Msa0279660:CDS |
| CAAGCAAATTGGAACAAGGC+AGG | 0.514664 | 2_3:+13711397 | Msa0279660:CDS |
| GTTTGTCCTACCGTTGGTGT+TGG | 0.517154 | 2_3:+13710537 | Msa0279660:CDS |
| AAAGAAACCGATTTCGAGGA+AGG | 0.524702 | 2_3:+13711231 | Msa0279660:CDS |
| GAAACAGCATGGGTTCAAAC+CGG | 0.530030 | 2_3:+13710447 | Msa0279660:CDS |
| GGTAAGAATAGTTACAATGA+AGG | 0.530117 | 2_3:+13711550 | Msa0279660:CDS |
| ATTTCGAGGAAGGGTTTGCA+GGG | 0.536820 | 2_3:+13711241 | Msa0279660:CDS |
| GGAGGACATTTAAGTGGTGG+TGG | 0.537068 | 2_3:+13710558 | Msa0279660:CDS |
| CTATCAAGCAAAATCTCGAC+CGG | 0.539456 | 2_3:-13711163 | None:intergenic |
| GCCGGCGTTTGTCCTACCGT+TGG | 0.546415 | 2_3:+13710531 | Msa0279660:CDS |
| CAAATGAAAATTAGAAGTGG+TGG | 0.548948 | 2_3:+13710330 | None:intergenic |
| TTCAAATAGTTCAATGACTG+TGG | 0.551392 | 2_3:-13711190 | None:intergenic |
| CATAAATTTCCAGCCCTATG+GGG | 0.563742 | 2_3:-13711361 | None:intergenic |
| ACGGTAGGACAAACGCCGGC+CGG | 0.566028 | 2_3:-13710528 | None:intergenic |
| GTTCAAACCGGTGCGCAACT+CGG | 0.566646 | 2_3:+13710459 | Msa0279660:CDS |
| TTATATTTCAATCCATATGG+TGG | 0.568758 | 2_3:+13711301 | Msa0279660:CDS |
| AAGCAAATTGGAACAAGGCA+GGG | 0.570655 | 2_3:+13711398 | Msa0279660:CDS |
| ATGTAGAAAATGAAACAGCA+TGG | 0.575890 | 2_3:+13710436 | Msa0279660:CDS |
| TGCATCGATAACATTATCAA+CGG | 0.576291 | 2_3:-13710613 | None:intergenic |
| ACACAAAATGGTACAAACAA+TGG | 0.576751 | 2_3:+13710971 | Msa0279660:CDS |
| AAGTGGTGGACATGACTATG+AGG | 0.577784 | 2_3:+13710344 | Msa0279660:CDS |
| AAGTTCACCGAGTTGCGCAC+CGG | 0.578304 | 2_3:-13710466 | None:intergenic |
| GGTGTTGGAGGACATTTAAG+TGG | 0.581743 | 2_3:+13710552 | Msa0279660:CDS |
| ATAAATTTCCAGCCCTATGG+GGG | 0.582776 | 2_3:-13711360 | None:intergenic |
| AAGAAACCGATTTCGAGGAA+GGG | 0.587517 | 2_3:+13711232 | Msa0279660:CDS |
| GTTGGAGGACATTTAAGTGG+TGG | 0.603248 | 2_3:+13710555 | Msa0279660:CDS |
| TGTAGAAAATGAAACAGCAT+GGG | 0.604944 | 2_3:+13710437 | Msa0279660:CDS |
| TTGCAAATGAAAATTAGAAG+TGG | 0.622495 | 2_3:+13710327 | None:intergenic |
| TGTGTCCAAGAATCCAAGAG+AGG | 0.628879 | 2_3:+13711483 | Msa0279660:CDS |
| TAGGGCTGGAAATTTATGGA+AGG | 0.642243 | 2_3:+13711366 | Msa0279660:CDS |
| TCATTCCTAAAGAAATTGTG+AGG | 0.648624 | 2_3:-13711643 | None:intergenic |
| TAAATGTCCTCCAACACCAA+CGG | 0.660004 | 2_3:-13710547 | None:intergenic |
| TGTCCTCCAACACCAACGGT+AGG | 0.664176 | 2_3:-13710543 | None:intergenic |
| ATATCAAGCAAATTGGAACA+AGG | 0.665806 | 2_3:+13711393 | Msa0279660:CDS |
| ACCAACGGTAGGACAAACGC+CGG | 0.678436 | 2_3:-13710532 | None:intergenic |
| TTTCGAGGAAGGGTTTGCAG+GGG | 0.685415 | 2_3:+13711242 | Msa0279660:CDS |
| AGTGGTGGACATGACTATGA+GGG | 0.725724 | 2_3:+13710345 | Msa0279660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATATCTAAGATAAAAAA+TGG | - | chr2_3:13710393-13710412 | None:intergenic | 15.0% |
| !! | ATATTATATTTCAATCCATA+TGG | + | chr2_3:13711298-13711317 | Msa0279660:CDS | 15.0% |
| !!! | AACATATCTAAGATAAAAAA+TGG | - | chr2_3:13710393-13710412 | None:intergenic | 15.0% |
| !! | ATATTATATTTCAATCCATA+TGG | + | chr2_3:13711298-13711317 | Msa0279660:CDS | 15.0% |
| !! | AATGAAAAAAGTAAAGTTCA+TGG | + | chr2_3:13710501-13710520 | Msa0279660:CDS | 20.0% |
| !!! | TAGTAACTGTTTTTCAAATT+AGG | + | chr2_3:13710840-13710859 | Msa0279660:intron | 20.0% |
| !!! | TTTTCAAATTAGGAAAACTT+TGG | + | chr2_3:13710850-13710869 | Msa0279660:intron | 20.0% |
| !!! | ACTTTTATATCTTTATTCCT+TGG | + | chr2_3:13711013-13711032 | Msa0279660:CDS | 20.0% |
| !! | AATGAAAAATTTCCTCAATT+GGG | + | chr2_3:13711064-13711083 | Msa0279660:CDS | 20.0% |
| !! | TAATTATAAGGATCTTGATT+TGG | + | chr2_3:13711513-13711532 | Msa0279660:CDS | 20.0% |
| !! | AATTATAAGGATCTTGATTT+GGG | + | chr2_3:13711514-13711533 | Msa0279660:CDS | 20.0% |
| !!! | TAAGGATAATTTTGATAGAT+TGG | + | chr2_3:13711597-13711616 | Msa0279660:CDS | 20.0% |
| !! | AATGAAAAAAGTAAAGTTCA+TGG | + | chr2_3:13710501-13710520 | Msa0279660:CDS | 20.0% |
| !!! | TAGTAACTGTTTTTCAAATT+AGG | + | chr2_3:13710840-13710859 | Msa0279660:intron | 20.0% |
| !!! | TTTTCAAATTAGGAAAACTT+TGG | + | chr2_3:13710850-13710869 | Msa0279660:intron | 20.0% |
| !!! | ACTTTTATATCTTTATTCCT+TGG | + | chr2_3:13711013-13711032 | Msa0279660:CDS | 20.0% |
| !! | AATGAAAAATTTCCTCAATT+GGG | + | chr2_3:13711064-13711083 | Msa0279660:CDS | 20.0% |
| !! | TAATTATAAGGATCTTGATT+TGG | + | chr2_3:13711513-13711532 | Msa0279660:CDS | 20.0% |
| !! | AATTATAAGGATCTTGATTT+GGG | + | chr2_3:13711514-13711533 | Msa0279660:CDS | 20.0% |
| !!! | TAAGGATAATTTTGATAGAT+TGG | + | chr2_3:13711597-13711616 | Msa0279660:CDS | 20.0% |
| ! | ATTGCTTGATAAAAAAGCAA+TGG | + | chr2_3:13710659-13710678 | Msa0279660:CDS | 25.0% |
| ! | TTGCTTGATAAAAAAGCAAT+GGG | + | chr2_3:13710660-13710679 | Msa0279660:CDS | 25.0% |
| ! | GTAAAAACAGTTACTATCTT+AGG | - | chr2_3:13710771-13710790 | None:intergenic | 25.0% |
| ! | CAAGTGACATAGTTTATAAT+TGG | + | chr2_3:13710882-13710901 | Msa0279660:CDS | 25.0% |
| ! | AATAGGTCATTATCAATAGT+TGG | - | chr2_3:13710920-13710939 | None:intergenic | 25.0% |
| !!! | TTGATAATGACCTATTCATT+AGG | + | chr2_3:13710924-13710943 | Msa0279660:CDS | 25.0% |
| ! | CAATAATAAGCCTAATGAAT+AGG | - | chr2_3:13710937-13710956 | None:intergenic | 25.0% |
| ! | GTTGTAAATGTTACACAAAA+TGG | + | chr2_3:13710959-13710978 | Msa0279660:CDS | 25.0% |
| ! | GAATGAAAAATTTCCTCAAT+TGG | + | chr2_3:13711063-13711082 | Msa0279660:CDS | 25.0% |
| ! | CAATATCGATATTACAAAAC+CGG | + | chr2_3:13711144-13711163 | Msa0279660:CDS | 25.0% |
| ! | TTATATTTCAATCCATATGG+TGG | + | chr2_3:13711301-13711320 | Msa0279660:CDS | 25.0% |
| ! | AGAGGCTTTCTTTAATTATA+AGG | + | chr2_3:13711501-13711520 | Msa0279660:CDS | 25.0% |
| ! | GATTTGGGAATTAATCATAA+TGG | + | chr2_3:13711529-13711548 | Msa0279660:CDS | 25.0% |
| !! | TTATGGACTTGAGTATTTTA+AGG | + | chr2_3:13711579-13711598 | Msa0279660:CDS | 25.0% |
| ! | ATTGCTTGATAAAAAAGCAA+TGG | + | chr2_3:13710659-13710678 | Msa0279660:CDS | 25.0% |
| ! | TTGCTTGATAAAAAAGCAAT+GGG | + | chr2_3:13710660-13710679 | Msa0279660:CDS | 25.0% |
| ! | GTAAAAACAGTTACTATCTT+AGG | - | chr2_3:13710771-13710790 | None:intergenic | 25.0% |
| ! | CAAGTGACATAGTTTATAAT+TGG | + | chr2_3:13710882-13710901 | Msa0279660:CDS | 25.0% |
| ! | AATAGGTCATTATCAATAGT+TGG | - | chr2_3:13710920-13710939 | None:intergenic | 25.0% |
| !!! | TTGATAATGACCTATTCATT+AGG | + | chr2_3:13710924-13710943 | Msa0279660:CDS | 25.0% |
| ! | CAATAATAAGCCTAATGAAT+AGG | - | chr2_3:13710937-13710956 | None:intergenic | 25.0% |
| ! | GTTGTAAATGTTACACAAAA+TGG | + | chr2_3:13710959-13710978 | Msa0279660:CDS | 25.0% |
| ! | GAATGAAAAATTTCCTCAAT+TGG | + | chr2_3:13711063-13711082 | Msa0279660:CDS | 25.0% |
| ! | CAATATCGATATTACAAAAC+CGG | + | chr2_3:13711144-13711163 | Msa0279660:CDS | 25.0% |
| ! | TTATATTTCAATCCATATGG+TGG | + | chr2_3:13711301-13711320 | Msa0279660:CDS | 25.0% |
| ! | AGAGGCTTTCTTTAATTATA+AGG | + | chr2_3:13711501-13711520 | Msa0279660:CDS | 25.0% |
| ! | GATTTGGGAATTAATCATAA+TGG | + | chr2_3:13711529-13711548 | Msa0279660:CDS | 25.0% |
| !! | TTATGGACTTGAGTATTTTA+AGG | + | chr2_3:13711579-13711598 | Msa0279660:CDS | 25.0% |
| ATGTAGAAAATGAAACAGCA+TGG | + | chr2_3:13710436-13710455 | Msa0279660:CDS | 30.0% | |
| TGTAGAAAATGAAACAGCAT+GGG | + | chr2_3:13710437-13710456 | Msa0279660:CDS | 30.0% | |
| ! | AAGTAAAGTTCATGGTTTTC+CGG | + | chr2_3:13710509-13710528 | Msa0279660:CDS | 30.0% |
| GGTAACATGATGAGAAAATA+TGG | + | chr2_3:13710585-13710604 | Msa0279660:CDS | 30.0% | |
| ! | TGCATCGATAACATTATCAA+CGG | - | chr2_3:13710616-13710635 | None:intergenic | 30.0% |
| GCACAAATTATCGATGTTAA+TGG | + | chr2_3:13710633-13710652 | Msa0279660:CDS | 30.0% | |
| !!! | AATGGGAGAAGATCTTTTTT+GGG | + | chr2_3:13710677-13710696 | Msa0279660:CDS | 30.0% |
| !!! | GATCTTTTTTGGGCTATTAA+AGG | + | chr2_3:13710687-13710706 | Msa0279660:CDS | 30.0% |
| !! | AAACTATGTCACTTGCATTT+TGG | - | chr2_3:13710877-13710896 | None:intergenic | 30.0% |
| ACACAAAATGGTACAAACAA+TGG | + | chr2_3:13710971-13710990 | Msa0279660:CDS | 30.0% | |
| !! | CGGTTTTGTAATATCGATAT+TGG | - | chr2_3:13711146-13711165 | None:intergenic | 30.0% |
| TTCAAATAGTTCAATGACTG+TGG | - | chr2_3:13711193-13711212 | None:intergenic | 30.0% | |
| AGGTTCAATATCAAGCAAAT+TGG | + | chr2_3:13711386-13711405 | Msa0279660:CDS | 30.0% | |
| ATATCAAGCAAATTGGAACA+AGG | + | chr2_3:13711393-13711412 | Msa0279660:CDS | 30.0% | |
| TAATTAAAGAAAGCCTCTCT+TGG | - | chr2_3:13711499-13711518 | None:intergenic | 30.0% | |
| GGTAAGAATAGTTACAATGA+AGG | + | chr2_3:13711550-13711569 | Msa0279660:CDS | 30.0% | |
| TACAATGAAGGAAGAGTTTA+TGG | + | chr2_3:13711562-13711581 | Msa0279660:CDS | 30.0% | |
| !! | GGATAATTTTGATAGATTGG+TGG | + | chr2_3:13711600-13711619 | Msa0279660:CDS | 30.0% |
| TTGATCCTCACAATTTCTTT+AGG | + | chr2_3:13711638-13711657 | Msa0279660:CDS | 30.0% | |
| TCATTCCTAAAGAAATTGTG+AGG | - | chr2_3:13711646-13711665 | None:intergenic | 30.0% | |
| ATGTAGAAAATGAAACAGCA+TGG | + | chr2_3:13710436-13710455 | Msa0279660:CDS | 30.0% | |
| TGTAGAAAATGAAACAGCAT+GGG | + | chr2_3:13710437-13710456 | Msa0279660:CDS | 30.0% | |
| ! | AAGTAAAGTTCATGGTTTTC+CGG | + | chr2_3:13710509-13710528 | Msa0279660:CDS | 30.0% |
| GGTAACATGATGAGAAAATA+TGG | + | chr2_3:13710585-13710604 | Msa0279660:CDS | 30.0% | |
| ! | TGCATCGATAACATTATCAA+CGG | - | chr2_3:13710616-13710635 | None:intergenic | 30.0% |
| GCACAAATTATCGATGTTAA+TGG | + | chr2_3:13710633-13710652 | Msa0279660:CDS | 30.0% | |
| !!! | AATGGGAGAAGATCTTTTTT+GGG | + | chr2_3:13710677-13710696 | Msa0279660:CDS | 30.0% |
| !!! | GATCTTTTTTGGGCTATTAA+AGG | + | chr2_3:13710687-13710706 | Msa0279660:CDS | 30.0% |
| !! | AAACTATGTCACTTGCATTT+TGG | - | chr2_3:13710877-13710896 | None:intergenic | 30.0% |
| ACACAAAATGGTACAAACAA+TGG | + | chr2_3:13710971-13710990 | Msa0279660:CDS | 30.0% | |
| !! | CGGTTTTGTAATATCGATAT+TGG | - | chr2_3:13711146-13711165 | None:intergenic | 30.0% |
| TTCAAATAGTTCAATGACTG+TGG | - | chr2_3:13711193-13711212 | None:intergenic | 30.0% | |
| AGGTTCAATATCAAGCAAAT+TGG | + | chr2_3:13711386-13711405 | Msa0279660:CDS | 30.0% | |
| ATATCAAGCAAATTGGAACA+AGG | + | chr2_3:13711393-13711412 | Msa0279660:CDS | 30.0% | |
| TAATTAAAGAAAGCCTCTCT+TGG | - | chr2_3:13711499-13711518 | None:intergenic | 30.0% | |
| GGTAAGAATAGTTACAATGA+AGG | + | chr2_3:13711550-13711569 | Msa0279660:CDS | 30.0% | |
| TACAATGAAGGAAGAGTTTA+TGG | + | chr2_3:13711562-13711581 | Msa0279660:CDS | 30.0% | |
| !! | GGATAATTTTGATAGATTGG+TGG | + | chr2_3:13711600-13711619 | Msa0279660:CDS | 30.0% |
| TTGATCCTCACAATTTCTTT+AGG | + | chr2_3:13711638-13711657 | Msa0279660:CDS | 30.0% | |
| TCATTCCTAAAGAAATTGTG+AGG | - | chr2_3:13711646-13711665 | None:intergenic | 30.0% | |
| AAATGGAACTTCAGCTACAT+AGG | - | chr2_3:13710376-13710395 | None:intergenic | 35.0% | |
| !!! | CAATGGGAGAAGATCTTTTT+TGG | + | chr2_3:13710676-13710695 | Msa0279660:CDS | 35.0% |
| !!! | CTTTTTTGGGCTATTAAAGG+TGG | + | chr2_3:13710690-13710709 | Msa0279660:CDS | 35.0% |
| ACAATGGTGCAAAGACTATT+AGG | + | chr2_3:13710987-13711006 | Msa0279660:CDS | 35.0% | |
| CAATGGTGCAAAGACTATTA+GGG | + | chr2_3:13710988-13711007 | Msa0279660:CDS | 35.0% | |
| ! | CAAGAGTTTTTGAATCACCA+AGG | - | chr2_3:13711033-13711052 | None:intergenic | 35.0% |
| ATTTCCTCAATTGGGTTTGA+AGG | + | chr2_3:13711072-13711091 | Msa0279660:CDS | 35.0% | |
| GTGATTGCATTGAAACAAGT+TGG | + | chr2_3:13711098-13711117 | Msa0279660:CDS | 35.0% | |
| ! | TGAAACAAGTTGGCTTCAAT+CGG | + | chr2_3:13711108-13711127 | Msa0279660:CDS | 35.0% |
| ! | ATGTAAAGAAACCGATTTCG+AGG | + | chr2_3:13711227-13711246 | Msa0279660:CDS | 35.0% |
| TTGGAAGAAGATGATTGAGT+TGG | + | chr2_3:13711267-13711286 | Msa0279660:CDS | 35.0% | |
| GATGTTGCTGATCATTACAT+AGG | + | chr2_3:13711424-13711443 | Msa0279660:CDS | 35.0% | |
| AAATGGAACTTCAGCTACAT+AGG | - | chr2_3:13710376-13710395 | None:intergenic | 35.0% | |
| !!! | CAATGGGAGAAGATCTTTTT+TGG | + | chr2_3:13710676-13710695 | Msa0279660:CDS | 35.0% |
| !!! | CTTTTTTGGGCTATTAAAGG+TGG | + | chr2_3:13710690-13710709 | Msa0279660:CDS | 35.0% |
| ACAATGGTGCAAAGACTATT+AGG | + | chr2_3:13710987-13711006 | Msa0279660:CDS | 35.0% | |
| CAATGGTGCAAAGACTATTA+GGG | + | chr2_3:13710988-13711007 | Msa0279660:CDS | 35.0% | |
| ! | CAAGAGTTTTTGAATCACCA+AGG | - | chr2_3:13711033-13711052 | None:intergenic | 35.0% |
| ATTTCCTCAATTGGGTTTGA+AGG | + | chr2_3:13711072-13711091 | Msa0279660:CDS | 35.0% | |
| GTGATTGCATTGAAACAAGT+TGG | + | chr2_3:13711098-13711117 | Msa0279660:CDS | 35.0% | |
| ! | TGAAACAAGTTGGCTTCAAT+CGG | + | chr2_3:13711108-13711127 | Msa0279660:CDS | 35.0% |
| ! | ATGTAAAGAAACCGATTTCG+AGG | + | chr2_3:13711227-13711246 | Msa0279660:CDS | 35.0% |
| TTGGAAGAAGATGATTGAGT+TGG | + | chr2_3:13711267-13711286 | Msa0279660:CDS | 35.0% | |
| GATGTTGCTGATCATTACAT+AGG | + | chr2_3:13711424-13711443 | Msa0279660:CDS | 35.0% | |
| TAAATGTCCTCCAACACCAA+CGG | - | chr2_3:13710550-13710569 | None:intergenic | 40.0% | |
| !! | CATTTAAGTGGTGGTGGATA+TGG | + | chr2_3:13710564-13710583 | Msa0279660:CDS | 40.0% |
| ! | TTTTGGGCTATTAAAGGTGG+TGG | + | chr2_3:13710693-13710712 | Msa0279660:CDS | 40.0% |
| CTTTCCTTCAAACCCAATTG+AGG | - | chr2_3:13711079-13711098 | None:intergenic | 40.0% | |
| !!! | GGCTTCAATCGGTTTTGTTT+TGG | + | chr2_3:13711119-13711138 | Msa0279660:CDS | 40.0% |
| CTATCAAGCAAAATCTCGAC+CGG | - | chr2_3:13711166-13711185 | None:intergenic | 40.0% | |
| ! | AAAGAAACCGATTTCGAGGA+AGG | + | chr2_3:13711231-13711250 | Msa0279660:CDS | 40.0% |
| ! | AAGAAACCGATTTCGAGGAA+GGG | + | chr2_3:13711232-13711251 | Msa0279660:CDS | 40.0% |
| ! | CAATCCATATGGTGGAAGAA+TGG | + | chr2_3:13711309-13711328 | Msa0279660:CDS | 40.0% |
| ATAAATTTCCAGCCCTATGG+GGG | - | chr2_3:13711363-13711382 | None:intergenic | 40.0% | |
| CATAAATTTCCAGCCCTATG+GGG | - | chr2_3:13711364-13711383 | None:intergenic | 40.0% | |
| CCATAAATTTCCAGCCCTAT+GGG | - | chr2_3:13711365-13711384 | None:intergenic | 40.0% | |
| TCCATAAATTTCCAGCCCTA+TGG | - | chr2_3:13711366-13711385 | None:intergenic | 40.0% | |
| TAGGGCTGGAAATTTATGGA+AGG | + | chr2_3:13711366-13711385 | Msa0279660:CDS | 40.0% | |
| AAGCAAATTGGAACAAGGCA+GGG | + | chr2_3:13711398-13711417 | Msa0279660:CDS | 40.0% | |
| CTTGGATTCTTGGACACAAA+AGG | - | chr2_3:13711481-13711500 | None:intergenic | 40.0% | |
| TAAATGTCCTCCAACACCAA+CGG | - | chr2_3:13710550-13710569 | None:intergenic | 40.0% | |
| !! | CATTTAAGTGGTGGTGGATA+TGG | + | chr2_3:13710564-13710583 | Msa0279660:CDS | 40.0% |
| ! | TTTTGGGCTATTAAAGGTGG+TGG | + | chr2_3:13710693-13710712 | Msa0279660:CDS | 40.0% |
| CTTTCCTTCAAACCCAATTG+AGG | - | chr2_3:13711079-13711098 | None:intergenic | 40.0% | |
| !!! | GGCTTCAATCGGTTTTGTTT+TGG | + | chr2_3:13711119-13711138 | Msa0279660:CDS | 40.0% |
| CTATCAAGCAAAATCTCGAC+CGG | - | chr2_3:13711166-13711185 | None:intergenic | 40.0% | |
| ! | AAAGAAACCGATTTCGAGGA+AGG | + | chr2_3:13711231-13711250 | Msa0279660:CDS | 40.0% |
| ! | AAGAAACCGATTTCGAGGAA+GGG | + | chr2_3:13711232-13711251 | Msa0279660:CDS | 40.0% |
| ! | CAATCCATATGGTGGAAGAA+TGG | + | chr2_3:13711309-13711328 | Msa0279660:CDS | 40.0% |
| ATAAATTTCCAGCCCTATGG+GGG | - | chr2_3:13711363-13711382 | None:intergenic | 40.0% | |
| CATAAATTTCCAGCCCTATG+GGG | - | chr2_3:13711364-13711383 | None:intergenic | 40.0% | |
| CCATAAATTTCCAGCCCTAT+GGG | - | chr2_3:13711365-13711384 | None:intergenic | 40.0% | |
| TCCATAAATTTCCAGCCCTA+TGG | - | chr2_3:13711366-13711385 | None:intergenic | 40.0% | |
| TAGGGCTGGAAATTTATGGA+AGG | + | chr2_3:13711366-13711385 | Msa0279660:CDS | 40.0% | |
| AAGCAAATTGGAACAAGGCA+GGG | + | chr2_3:13711398-13711417 | Msa0279660:CDS | 40.0% | |
| CTTGGATTCTTGGACACAAA+AGG | - | chr2_3:13711481-13711500 | None:intergenic | 40.0% | |
| !! | AAGTGGTGGACATGACTATG+AGG | + | chr2_3:13710344-13710363 | Msa0279660:CDS | 45.0% |
| !! | AGTGGTGGACATGACTATGA+GGG | + | chr2_3:13710345-13710364 | Msa0279660:CDS | 45.0% |
| GAAACAGCATGGGTTCAAAC+CGG | + | chr2_3:13710447-13710466 | Msa0279660:CDS | 45.0% | |
| ! | AAAGTTCATGGTTTTCCGGC+CGG | + | chr2_3:13710513-13710532 | Msa0279660:CDS | 45.0% |
| ! | GGTGTTGGAGGACATTTAAG+TGG | + | chr2_3:13710552-13710571 | Msa0279660:CDS | 45.0% |
| GTTGGAGGACATTTAAGTGG+TGG | + | chr2_3:13710555-13710574 | Msa0279660:CDS | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | + | chr2_3:13710806-13710825 | Msa0279660:intron | 45.0% | |
| TGCAAACCCTTCCTCGAAAT+CGG | - | chr2_3:13711241-13711260 | None:intergenic | 45.0% | |
| ATTTCGAGGAAGGGTTTGCA+GGG | + | chr2_3:13711241-13711260 | Msa0279660:CDS | 45.0% | |
| TCAGCCATTCTTCCACCATA+TGG | - | chr2_3:13711316-13711335 | None:intergenic | 45.0% | |
| ! | GGGAAAGGTGTATCTGTTGA+TGG | - | chr2_3:13711343-13711362 | None:intergenic | 45.0% |
| AGATACACCTTTCCCCCATA+GGG | + | chr2_3:13711348-13711367 | Msa0279660:CDS | 45.0% | |
| CCCATAGGGCTGGAAATTTA+TGG | + | chr2_3:13711362-13711381 | Msa0279660:CDS | 45.0% | |
| CAAGCAAATTGGAACAAGGC+AGG | + | chr2_3:13711397-13711416 | Msa0279660:CDS | 45.0% | |
| TGTGTCCAAGAATCCAAGAG+AGG | + | chr2_3:13711483-13711502 | Msa0279660:CDS | 45.0% | |
| GAAAGCCTCTCTTGGATTCT+TGG | - | chr2_3:13711491-13711510 | None:intergenic | 45.0% | |
| ! | CTTTTCCTACTAGGCAGAGT+AGG | - | chr2_3:13711679-13711698 | None:intergenic | 45.0% |
| !! | AAGTGGTGGACATGACTATG+AGG | + | chr2_3:13710344-13710363 | Msa0279660:CDS | 45.0% |
| !! | AGTGGTGGACATGACTATGA+GGG | + | chr2_3:13710345-13710364 | Msa0279660:CDS | 45.0% |
| GAAACAGCATGGGTTCAAAC+CGG | + | chr2_3:13710447-13710466 | Msa0279660:CDS | 45.0% | |
| ! | AAAGTTCATGGTTTTCCGGC+CGG | + | chr2_3:13710513-13710532 | Msa0279660:CDS | 45.0% |
| ! | GGTGTTGGAGGACATTTAAG+TGG | + | chr2_3:13710552-13710571 | Msa0279660:CDS | 45.0% |
| GTTGGAGGACATTTAAGTGG+TGG | + | chr2_3:13710555-13710574 | Msa0279660:CDS | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | + | chr2_3:13710806-13710825 | Msa0279660:intron | 45.0% | |
| TGCAAACCCTTCCTCGAAAT+CGG | - | chr2_3:13711241-13711260 | None:intergenic | 45.0% | |
| ATTTCGAGGAAGGGTTTGCA+GGG | + | chr2_3:13711241-13711260 | Msa0279660:CDS | 45.0% | |
| TCAGCCATTCTTCCACCATA+TGG | - | chr2_3:13711316-13711335 | None:intergenic | 45.0% | |
| ! | GGGAAAGGTGTATCTGTTGA+TGG | - | chr2_3:13711343-13711362 | None:intergenic | 45.0% |
| AGATACACCTTTCCCCCATA+GGG | + | chr2_3:13711348-13711367 | Msa0279660:CDS | 45.0% | |
| CCCATAGGGCTGGAAATTTA+TGG | + | chr2_3:13711362-13711381 | Msa0279660:CDS | 45.0% | |
| CAAGCAAATTGGAACAAGGC+AGG | + | chr2_3:13711397-13711416 | Msa0279660:CDS | 45.0% | |
| TGTGTCCAAGAATCCAAGAG+AGG | + | chr2_3:13711483-13711502 | Msa0279660:CDS | 45.0% | |
| GAAAGCCTCTCTTGGATTCT+TGG | - | chr2_3:13711491-13711510 | None:intergenic | 45.0% | |
| ! | CTTTTCCTACTAGGCAGAGT+AGG | - | chr2_3:13711679-13711698 | None:intergenic | 45.0% |
| GTTTGTCCTACCGTTGGTGT+TGG | + | chr2_3:13710537-13710556 | Msa0279660:CDS | 50.0% | |
| GGAGGACATTTAAGTGGTGG+TGG | + | chr2_3:13710558-13710577 | Msa0279660:CDS | 50.0% | |
| ! | TGGGCTATTAAAGGTGGTGG+TGG | + | chr2_3:13710696-13710715 | Msa0279660:CDS | 50.0% |
| CAACGCCTTATCCCACTAAG+TGG | + | chr2_3:13710805-13710824 | Msa0279660:intron | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr2_3:13710807-13710826 | Msa0279660:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_3:13710811-13710830 | Msa0279660:intron | 50.0% | |
| GATTTCGAGGAAGGGTTTGC+AGG | + | chr2_3:13711240-13711259 | Msa0279660:CDS | 50.0% | |
| TTTCGAGGAAGGGTTTGCAG+GGG | + | chr2_3:13711242-13711261 | Msa0279660:CDS | 50.0% | |
| CAGATACACCTTTCCCCCAT+AGG | + | chr2_3:13711347-13711366 | Msa0279660:CDS | 50.0% | |
| GCATACCTACTCTGCCTAGT+AGG | + | chr2_3:13711671-13711690 | Msa0279660:CDS | 50.0% | |
| GTTTGTCCTACCGTTGGTGT+TGG | + | chr2_3:13710537-13710556 | Msa0279660:CDS | 50.0% | |
| GGAGGACATTTAAGTGGTGG+TGG | + | chr2_3:13710558-13710577 | Msa0279660:CDS | 50.0% | |
| ! | TGGGCTATTAAAGGTGGTGG+TGG | + | chr2_3:13710696-13710715 | Msa0279660:CDS | 50.0% |
| CAACGCCTTATCCCACTAAG+TGG | + | chr2_3:13710805-13710824 | Msa0279660:intron | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr2_3:13710807-13710826 | Msa0279660:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_3:13710811-13710830 | Msa0279660:intron | 50.0% | |
| GATTTCGAGGAAGGGTTTGC+AGG | + | chr2_3:13711240-13711259 | Msa0279660:CDS | 50.0% | |
| TTTCGAGGAAGGGTTTGCAG+GGG | + | chr2_3:13711242-13711261 | Msa0279660:CDS | 50.0% | |
| CAGATACACCTTTCCCCCAT+AGG | + | chr2_3:13711347-13711366 | Msa0279660:CDS | 50.0% | |
| GCATACCTACTCTGCCTAGT+AGG | + | chr2_3:13711671-13711690 | Msa0279660:CDS | 50.0% | |
| GTTCAAACCGGTGCGCAACT+CGG | + | chr2_3:13710459-13710478 | Msa0279660:CDS | 55.0% | |
| AAGTTCACCGAGTTGCGCAC+CGG | - | chr2_3:13710469-13710488 | None:intergenic | 55.0% | |
| ACCAACGGTAGGACAAACGC+CGG | - | chr2_3:13710535-13710554 | None:intergenic | 55.0% | |
| !! | TGTCCTACCGTTGGTGTTGG+AGG | + | chr2_3:13710540-13710559 | Msa0279660:CDS | 55.0% |
| TGTCCTCCAACACCAACGGT+AGG | - | chr2_3:13710546-13710565 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_3:13710813-13710832 | None:intergenic | 55.0% | |
| CTTAGCCGACCCCACTTAGT+GGG | - | chr2_3:13710819-13710838 | None:intergenic | 55.0% | |
| TCTTAGCCGACCCCACTTAG+TGG | - | chr2_3:13710820-13710839 | None:intergenic | 55.0% | |
| GGAAGGGTTTGCAGGGGATT+TGG | + | chr2_3:13711248-13711267 | Msa0279660:CDS | 55.0% | |
| TTTCCAGCCCTATGGGGGAA+AGG | - | chr2_3:13711358-13711377 | None:intergenic | 55.0% | |
| GTTCAAACCGGTGCGCAACT+CGG | + | chr2_3:13710459-13710478 | Msa0279660:CDS | 55.0% | |
| AAGTTCACCGAGTTGCGCAC+CGG | - | chr2_3:13710469-13710488 | None:intergenic | 55.0% | |
| ACCAACGGTAGGACAAACGC+CGG | - | chr2_3:13710535-13710554 | None:intergenic | 55.0% | |
| !! | TGTCCTACCGTTGGTGTTGG+AGG | + | chr2_3:13710540-13710559 | Msa0279660:CDS | 55.0% |
| TGTCCTCCAACACCAACGGT+AGG | - | chr2_3:13710546-13710565 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_3:13710813-13710832 | None:intergenic | 55.0% | |
| CTTAGCCGACCCCACTTAGT+GGG | - | chr2_3:13710819-13710838 | None:intergenic | 55.0% | |
| TCTTAGCCGACCCCACTTAG+TGG | - | chr2_3:13710820-13710839 | None:intergenic | 55.0% | |
| GGAAGGGTTTGCAGGGGATT+TGG | + | chr2_3:13711248-13711267 | Msa0279660:CDS | 55.0% | |
| TTTCCAGCCCTATGGGGGAA+AGG | - | chr2_3:13711358-13711377 | None:intergenic | 55.0% | |
| !! | GGTGGTGGTGGAGCTAGCTT+TGG | + | chr2_3:13710708-13710727 | Msa0279660:CDS | 60.0% |
| ACACCTTTCCCCCATAGGGC+TGG | + | chr2_3:13711352-13711371 | Msa0279660:CDS | 60.0% | |
| !! | GGTGGTGGTGGAGCTAGCTT+TGG | + | chr2_3:13710708-13710727 | Msa0279660:CDS | 60.0% |
| ACACCTTTCCCCCATAGGGC+TGG | + | chr2_3:13711352-13711371 | Msa0279660:CDS | 60.0% | |
| ACGGTAGGACAAACGCCGGC+CGG | - | chr2_3:13710531-13710550 | None:intergenic | 65.0% | |
| GCCGGCGTTTGTCCTACCGT+TGG | + | chr2_3:13710531-13710550 | Msa0279660:CDS | 65.0% | |
| ACGGTAGGACAAACGCCGGC+CGG | - | chr2_3:13710531-13710550 | None:intergenic | 65.0% | |
| GCCGGCGTTTGTCCTACCGT+TGG | + | chr2_3:13710531-13710550 | Msa0279660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13710333 | 13711702 | 13710333 | ID=Msa0279660;Name=Msa0279660 |
| chr2_3 | mRNA | 13710333 | 13711702 | 13710333 | ID=Msa0279660-mRNA-1;Parent=Msa0279660;Name=Msa0279660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|2|0|420 |
| chr2_3 | exon | 13710333 | 13710754 | 13710333 | ID=Msa0279660-mRNA-1:exon:5819;Parent=Msa0279660-mRNA-1 |
| chr2_3 | exon | 13710862 | 13711702 | 13710862 | ID=Msa0279660-mRNA-1:exon:5820;Parent=Msa0279660-mRNA-1 |
| chr2_3 | CDS | 13710333 | 13710754 | 13710333 | ID=Msa0279660-mRNA-1:cds;Parent=Msa0279660-mRNA-1 |
| chr2_3 | CDS | 13710862 | 13711702 | 13710862 | ID=Msa0279660-mRNA-1:cds;Parent=Msa0279660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
