Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819430 | XP_003616827.2 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819430 | sp|Q9MAU5|Y1049_ARATH | 59.783 | 460 | 183 | 2 | 30 | 489 | 27 | 484 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819430 | G7K7F5 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 972 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0819430 | 0.803315 | 3.697405e-49 | -8.615850e-47 |
| Msa0048000 | Msa0819430 | 0.806880 | 6.634963e-50 | -8.615850e-47 |
| Msa0102750 | Msa0819430 | 0.802323 | 5.925800e-49 | -8.615850e-47 |
| Msa0738940 | Msa0819430 | 0.879759 | 9.585958e-70 | -8.615850e-47 |
| Msa0754720 | Msa0819430 | -0.806005 | 1.014912e-49 | -8.615850e-47 |
| Msa0819430 | Msa0859450 | 0.882731 | 8.142274e-71 | -8.615850e-47 |
| Msa0819430 | Msa0863800 | 0.808132 | 3.599592e-50 | -8.615850e-47 |
| Msa0819430 | Msa0908170 | 0.832464 | 9.311825e-56 | -8.615850e-47 |
| Msa0819430 | Msa1037700 | -0.806472 | 8.092287e-50 | -8.615850e-47 |
| Msa0819430 | Msa1080160 | 0.809116 | 2.218250e-50 | -8.615850e-47 |
| Msa0819430 | Msa1404540 | 0.811650 | 6.296448e-51 | -8.615850e-47 |
| Msa0819430 | Msa1408790 | 0.805145 | 1.537853e-49 | -8.615850e-47 |
| Msa0819430 | Msa1431060 | 0.808247 | 3.401682e-50 | -8.615850e-47 |
| Msa0819430 | Msa1436040 | 0.806661 | 7.379743e-50 | -8.615850e-47 |
| Msa0464900 | Msa0819430 | 0.833407 | 5.428542e-56 | -8.615850e-47 |
| Msa0473240 | Msa0819430 | 0.814177 | 1.759528e-51 | -8.615850e-47 |
| Msa0260810 | Msa0819430 | 0.811632 | 6.354328e-51 | -8.615850e-47 |
| Msa0304700 | Msa0819430 | 0.805769 | 1.137538e-49 | -8.615850e-47 |
| Msa0484780 | Msa0819430 | 0.805320 | 1.413187e-49 | -8.615850e-47 |
| Msa0517490 | Msa0819430 | 0.803222 | 3.864617e-49 | -8.615850e-47 |
| Msa0547400 | Msa0819430 | 0.806263 | 8.954622e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819430 | MtrunA17_Chr5g0438581 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 972 |
| Msa0819430 | MtrunA17_Chr5g0445001 | 49.571 | 466 | 231 | 3 | 29 | 494 | 24 | 485 | 1.89e-161 | 466 |
| Msa0819430 | MtrunA17_Chr3g0100111 | 44.764 | 487 | 266 | 3 | 6 | 492 | 260 | 743 | 8.08e-139 | 417 |
| Msa0819430 | MtrunA17_Chr3g0100111 | 40.517 | 116 | 68 | 1 | 25 | 140 | 22 | 136 | 3.22e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819430 | AT1G04970.1 | 59.783 | 460 | 183 | 2 | 30 | 489 | 27 | 484 | 0.0 | 581 |
| Msa0819430 | AT1G04970.2 | 60.000 | 350 | 139 | 1 | 140 | 489 | 10 | 358 | 1.07e-155 | 447 |
| Msa0819430 | AT1G04970.3 | 60.000 | 350 | 139 | 1 | 140 | 489 | 10 | 358 | 1.07e-155 | 447 |
| Msa0819430 | AT3G20270.5 | 37.295 | 488 | 284 | 4 | 4 | 481 | 34 | 509 | 3.60e-116 | 352 |
| Msa0819430 | AT3G20270.2 | 37.295 | 488 | 284 | 4 | 4 | 481 | 34 | 509 | 3.60e-116 | 352 |
| Msa0819430 | AT3G20270.4 | 37.295 | 488 | 284 | 4 | 4 | 481 | 34 | 509 | 3.60e-116 | 352 |
| Msa0819430 | AT3G20270.1 | 37.295 | 488 | 284 | 4 | 4 | 481 | 241 | 716 | 8.39e-113 | 350 |
| Msa0819430 | AT3G20270.3 | 37.295 | 488 | 284 | 4 | 4 | 481 | 241 | 716 | 8.39e-113 | 350 |
| Msa0819430 | AT3G20270.6 | 37.071 | 437 | 253 | 4 | 4 | 430 | 34 | 458 | 2.33e-99 | 307 |
Find 113 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAAGTTGAACTTAAAT+TGG | 0.156959 | 5_3:+55902077 | Msa0819430:CDS |
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5_3:+55902158 | Msa0819430:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5_3:-55902976 | None:intergenic |
| GATGAATTTGTGCATAAAAT+TGG | 0.186810 | 5_3:-55902595 | None:intergenic |
| TCAGGTTTGGTCAAAATAAA+TGG | 0.203844 | 5_3:+55903743 | Msa0819430:CDS |
| GGAATTGAGATTGTTGCTTC+TGG | 0.206164 | 5_3:+55901252 | Msa0819430:CDS |
| GGAGAACCAGGAAGGATATT+TGG | 0.213932 | 5_3:+55902104 | Msa0819430:CDS |
| TCTACGAATGTTCCTTATTC+AGG | 0.249285 | 5_3:+55903835 | Msa0819430:CDS |
| CTTATGAGTATAGTAGTATT+TGG | 0.262312 | 5_3:+55901304 | Msa0819430:CDS |
| TAAGGTGAAACCATGAATAA+TGG | 0.283240 | 5_3:-55904501 | None:intergenic |
| AATGCCTTCTCCAAGATTCT+TGG | 0.286219 | 5_3:-55902380 | None:intergenic |
| TCAATAATTGTCCACATAAC+TGG | 0.286728 | 5_3:-55904425 | None:intergenic |
| GCCATGAATTCTCATGTAAT+TGG | 0.288094 | 5_3:+55904828 | Msa0819430:three_prime_UTR |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5_3:-55902975 | None:intergenic |
| TCACGAAATTAAGACCGTTT+TGG | 0.299456 | 5_3:-55901062 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5_3:-55903847 | None:intergenic |
| CCACAGATGATTCAAGCTTC+AGG | 0.313074 | 5_3:+55903725 | Msa0819430:intron |
| TCCAATTACATGAGAATTCA+TGG | 0.329077 | 5_3:-55904829 | None:intergenic |
| GGTTAGTTGTAATTTGAGTT+TGG | 0.343049 | 5_3:+55901275 | Msa0819430:CDS |
| CTTAGATGTGCATTTGCATA+TGG | 0.343364 | 5_3:-55904461 | None:intergenic |
| TGAGATCCAAATATCCTTCC+TGG | 0.345049 | 5_3:-55902110 | None:intergenic |
| AAGTCTTCCGAAGGAGGTTC+CGG | 0.360461 | 5_3:+55902426 | Msa0819430:CDS |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5_3:+55901333 | Msa0819430:CDS |
| CCAATTCAGATCTGCGACTA+AGG | 0.374932 | 5_3:-55904874 | None:intergenic |
| TGAGGTTGTTGTTGGTTCAT+TGG | 0.378280 | 5_3:-55900906 | None:intergenic |
| TGAAGGAAGAGGTGAATAGT+AGG | 0.380432 | 5_3:-55900975 | None:intergenic |
| TTACCCTTGCCCATTATTCA+TGG | 0.394754 | 5_3:+55904491 | Msa0819430:CDS |
| GAATTGAGATTGTTGCTTCT+GGG | 0.399939 | 5_3:+55901253 | Msa0819430:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.399972 | 5_3:+55901320 | Msa0819430:CDS |
| ATGGAAGTTGAACTTAAATT+GGG | 0.400019 | 5_3:+55902078 | Msa0819430:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5_3:+55903782 | Msa0819430:CDS |
| ATATTTGGATCTCAAACTTA+AGG | 0.406500 | 5_3:+55902119 | Msa0819430:CDS |
| AATGCTATCACCAAGAATCT+TGG | 0.412923 | 5_3:+55902370 | Msa0819430:CDS |
| GGGTAATTGGAGTGAAACTA+TGG | 0.413154 | 5_3:-55901115 | None:intergenic |
| GATTATCTCTGCGTCTTGTA+AGG | 0.416518 | 5_3:-55904519 | None:intergenic |
| CCAATTACCCAATATTGAAA+AGG | 0.416560 | 5_3:+55901128 | Msa0819430:CDS |
| GTGGAAATTGAGGTTGTTGT+TGG | 0.421029 | 5_3:-55900914 | None:intergenic |
| AGTTGAACTTAAATTGGGAT+TGG | 0.424622 | 5_3:+55902083 | Msa0819430:CDS |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5_3:+55901350 | Msa0819430:CDS |
| TATATCTTTGTCTTCTCCTC+CGG | 0.426541 | 5_3:+55902999 | Msa0819430:CDS |
| TCATCGACCGGAACCTCCTT+CGG | 0.427115 | 5_3:-55902433 | None:intergenic |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5_3:-55901333 | None:intergenic |
| GAGTTCTTGTGGCAGAGGTT+AGG | 0.432697 | 5_3:-55902565 | None:intergenic |
| TTCAGGCGAAATTTATGCAT+TGG | 0.438077 | 5_3:+55902872 | Msa0819430:intron |
| AAGGTGAAACCATGAATAAT+GGG | 0.440200 | 5_3:-55904500 | None:intergenic |
| TTGTGGCAGAGGTTAGGAAT+AGG | 0.440618 | 5_3:-55902559 | None:intergenic |
| GATGATTCAAGCTTCAGGTT+TGG | 0.443327 | 5_3:+55903730 | Msa0819430:intron |
| GTTGTAATTTGAGTTTGGAT+TGG | 0.444738 | 5_3:+55901280 | Msa0819430:CDS |
| GGTGCATCTTGGCTTTATCA+AGG | 0.447248 | 5_3:+55902186 | Msa0819430:CDS |
| TTATTATTCCTCAGTTGTAC+AGG | 0.451409 | 5_3:+55902947 | Msa0819430:CDS |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5_3:+55903798 | Msa0819430:CDS |
| TACTGAGTGAGTCGTCGATT+GGG | 0.463677 | 5_3:+55902494 | Msa0819430:CDS |
| TTTGTCTTCTCCTCCGGTTG+TGG | 0.464481 | 5_3:+55903005 | Msa0819430:CDS |
| CGATTGGGTTTGAAACGAAT+GGG | 0.465684 | 5_3:+55902509 | Msa0819430:CDS |
| TGATCTGAAATCTCCACAAC+CGG | 0.477470 | 5_3:-55903018 | None:intergenic |
| GATCTAGATGTATAAAATAC+AGG | 0.477668 | 5_3:+55904785 | Msa0819430:three_prime_UTR |
| ACCAGTAGCATGCATCTCAT+TGG | 0.482084 | 5_3:+55903104 | Msa0819430:CDS |
| CCTCGAAGGTACCATCAGAT+TGG | 0.483723 | 5_3:+55903772 | Msa0819430:CDS |
| CTCGAAGGTACCATCAGATT+GGG | 0.485370 | 5_3:+55903773 | Msa0819430:CDS |
| GAGTATAGTAGTATTTGGTT+TGG | 0.487613 | 5_3:+55901309 | Msa0819430:CDS |
| TTACTGAGTGAGTCGTCGAT+TGG | 0.487683 | 5_3:+55902493 | Msa0819430:CDS |
| TCGATTGGGTTTGAAACGAA+TGG | 0.488846 | 5_3:+55902508 | Msa0819430:CDS |
| AGTAGGAGAAGGAAGAAGAA+AGG | 0.489173 | 5_3:-55900958 | None:intergenic |
| TTAATAGGGATATGAAAGCT+TGG | 0.490488 | 5_3:-55901035 | None:intergenic |
| GATTCTTCTATTGTTAAGCC+TGG | 0.493921 | 5_3:+55901222 | Msa0819430:CDS |
| GGTACAAGAATTCCAATGTT+GGG | 0.495246 | 5_3:+55901150 | Msa0819430:CDS |
| ACCAATGAGATGCATGCTAC+TGG | 0.496446 | 5_3:-55903105 | None:intergenic |
| CAATTACCCAATATTGAAAA+GGG | 0.507561 | 5_3:+55901129 | Msa0819430:CDS |
| GATATTTCAATAAAATTGGA+TGG | 0.510412 | 5_3:+55902162 | Msa0819430:CDS |
| TTGTGATTGCGTGGGAATGA+AGG | 0.512955 | 5_3:-55900992 | None:intergenic |
| GCAAATGCACATCTAAGTAA+AGG | 0.513079 | 5_3:+55904467 | Msa0819430:CDS |
| GAAATTTATGCATTGGATTG+TGG | 0.522169 | 5_3:+55902879 | Msa0819430:CDS |
| AATTGAGATTGTTGCTTCTG+GGG | 0.524103 | 5_3:+55901254 | Msa0819430:CDS |
| TCCCTATTAATCACCCAAAA+CGG | 0.526549 | 5_3:+55901048 | Msa0819430:CDS |
| CCAATCTGATGGTACCTTCG+AGG | 0.527067 | 5_3:-55903772 | None:intergenic |
| AAGAGGTGAATAGTAGGAGA+AGG | 0.537307 | 5_3:-55900969 | None:intergenic |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5_3:+55902916 | Msa0819430:CDS |
| GTGCATCTTGGCTTTATCAA+GGG | 0.540311 | 5_3:+55902187 | Msa0819430:CDS |
| AATTGGATGGTGGTGCATCT+TGG | 0.543201 | 5_3:+55902175 | Msa0819430:CDS |
| ATTGTTAAGCCTGGTGAGAG+TGG | 0.546066 | 5_3:+55901231 | Msa0819430:CDS |
| TCATTGAAATGGAGCAACAT+TGG | 0.550438 | 5_3:+55903809 | Msa0819430:CDS |
| ACATCTAGATCTAGGCATGA+TGG | 0.553285 | 5_3:-55904773 | None:intergenic |
| TTTGAAAAGTCTTCCGAAGG+AGG | 0.555501 | 5_3:+55902420 | Msa0819430:CDS |
| GGGTACAAGAATTCCAATGT+TGG | 0.558223 | 5_3:+55901149 | Msa0819430:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5_3:-55902910 | None:intergenic |
| GGCAGAGGTTAGGAATAGGT+AGG | 0.566366 | 5_3:-55902555 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+AGG | 0.576449 | 5_3:+55903027 | Msa0819430:CDS |
| ATCTTGGAGAAGGCATTACA+AGG | 0.578899 | 5_3:+55902386 | Msa0819430:CDS |
| AACAGCCTCGTCTAAAGAGA+TGG | 0.579922 | 5_3:-55902629 | None:intergenic |
| ATCTCAATTCCACTCTCACC+AGG | 0.579964 | 5_3:-55901240 | None:intergenic |
| TAAATTGGGATTGGAGAACC+AGG | 0.581245 | 5_3:+55902092 | Msa0819430:CDS |
| TTTGTGGGTTGTGGAAATTG+AGG | 0.582939 | 5_3:-55900924 | None:intergenic |
| GCAGAGGTTAGGAATAGGTA+GGG | 0.583860 | 5_3:-55902554 | None:intergenic |
| GAAACCATGAATAATGGGCA+AGG | 0.588237 | 5_3:-55904495 | None:intergenic |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5_3:+55902920 | Msa0819430:CDS |
| AGGTTGAGATTGTGATTGCG+TGG | 0.593779 | 5_3:-55901001 | None:intergenic |
| AACGAAGAGTGATCATCGAC+CGG | 0.595323 | 5_3:-55902445 | None:intergenic |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5_3:-55903783 | None:intergenic |
| ATCACCAAGAATCTTGGAGA+AGG | 0.605412 | 5_3:+55902376 | Msa0819430:CDS |
| AAAACTTACATCATAATACA+AGG | 0.616369 | 5_3:-55902668 | None:intergenic |
| TTGCGTGGGAATGAAGGAAG+AGG | 0.616471 | 5_3:-55900986 | None:intergenic |
| ATAAATGGAAATAACCTCGA+AGG | 0.620373 | 5_3:+55903758 | Msa0819430:CDS |
| ATATTTGAAAAGTCTTCCGA+AGG | 0.620652 | 5_3:+55902417 | Msa0819430:CDS |
| AAGTAAACACTACCCAACAT+TGG | 0.621139 | 5_3:-55901162 | None:intergenic |
| GGGTATTTCCTGTACAACTG+AGG | 0.624337 | 5_3:-55902955 | None:intergenic |
| ATTTCAATAAAATTGGATGG+TGG | 0.629003 | 5_3:+55902165 | Msa0819430:CDS |
| GGTTGAGATTGTGATTGCGT+GGG | 0.632094 | 5_3:-55901000 | None:intergenic |
| AAACCATGAATAATGGGCAA+GGG | 0.633824 | 5_3:-55904494 | None:intergenic |
| TTGGGATTGGAGAACCAGGA+AGG | 0.639874 | 5_3:+55902096 | Msa0819430:CDS |
| GATCTCAAACTTAAGGACTG+TGG | 0.659076 | 5_3:+55902126 | Msa0819430:CDS |
| TCTGAAATCTCCACAACCGG+AGG | 0.673824 | 5_3:-55903015 | None:intergenic |
| GCTAGCCATCTCTTTAGACG+AGG | 0.696866 | 5_3:+55902624 | Msa0819430:CDS |
| AAATAACAGAAGATAGCACA+AGG | 0.709739 | 5_3:-55904723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTTCAATAAAAT+TGG | + | chr5_3:55902158-55902177 | Msa0819430:CDS | 10.0% |
| !!! | TGTTATTTGTTAATTTTTTA+GGG | + | chr5_3:55904738-55904757 | Msa0819430:three_prime_UTR | 10.0% |
| !! | AAAATAAAAAACACAAACAA+AGG | - | chr5_3:55901391-55901410 | None:intergenic | 15.0% |
| !!! | TGTTTGTGTTTTTTATTTTT+TGG | + | chr5_3:55901392-55901411 | Msa0819430:intron | 15.0% |
| !!! | GTTTGTGTTTTTTATTTTTT+GGG | + | chr5_3:55901393-55901412 | Msa0819430:intron | 15.0% |
| !! | TTCATAAAAATGTAATGAAA+AGG | + | chr5_3:55902018-55902037 | Msa0819430:intron | 15.0% |
| !! | TCATAAAAATGTAATGAAAA+GGG | + | chr5_3:55902019-55902038 | Msa0819430:intron | 15.0% |
| !!! | AATTTTATTTACTATGTCAT+TGG | + | chr5_3:55902814-55902833 | Msa0819430:intron | 15.0% |
| !! | AAAAACATACACATAAATTA+TGG | - | chr5_3:55903165-55903184 | None:intergenic | 15.0% |
| !! | TTTGATTATGATGAATTATA+TGG | + | chr5_3:55903245-55903264 | Msa0819430:intron | 15.0% |
| !! | TTGATTATGATGAATTATAT+GGG | + | chr5_3:55903246-55903265 | Msa0819430:intron | 15.0% |
| !!! | TGATTTCTTTCTTTTTTTTT+TGG | - | chr5_3:55904690-55904709 | None:intergenic | 15.0% |
| !!! | CTGTTATTTGTTAATTTTTT+AGG | + | chr5_3:55904737-55904756 | Msa0819430:three_prime_UTR | 15.0% |
| !! | ACATAATCTATTTATGATTG+TGG | + | chr5_3:55901479-55901498 | Msa0819430:intron | 20.0% |
| !! | TAATTAAGTTTATTCTCTCA+AGG | - | chr5_3:55901511-55901530 | None:intergenic | 20.0% |
| !! | TAAAAAGATAGCTTATACAT+AGG | - | chr5_3:55901576-55901595 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGATAAGCA+GGG | + | chr5_3:55901590-55901609 | Msa0819430:intron | 20.0% |
| !!! | ATCATTAAATAAGTTGACAT+TGG | - | chr5_3:55901890-55901909 | None:intergenic | 20.0% |
| !! | GATATTTCAATAAAATTGGA+TGG | + | chr5_3:55902162-55902181 | Msa0819430:CDS | 20.0% |
| !! | AAAACTTACATCATAATACA+AGG | - | chr5_3:55902671-55902690 | None:intergenic | 20.0% |
| !! | ATATATTCAGAGAATAAGAA+TGG | - | chr5_3:55903195-55903214 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | + | chr5_3:55903200-55903219 | Msa0819430:intron | 20.0% |
| !! | TCATAATCAAAATAACATTG+AGG | - | chr5_3:55903236-55903255 | None:intergenic | 20.0% |
| !!! | AACATCTAATCTTTTAAACT+CGG | - | chr5_3:55903501-55903520 | None:intergenic | 20.0% |
| !! | AGTTTAAAAGATTAGATGTT+TGG | + | chr5_3:55903501-55903520 | Msa0819430:intron | 20.0% |
| !! | ACATAAATCATTATAAGTTC+AGG | + | chr5_3:55903935-55903954 | Msa0819430:intron | 20.0% |
| !! | TCATATTGATATTTAAACAC+AGG | - | chr5_3:55903982-55904001 | None:intergenic | 20.0% |
| !!! | TATTTTATACATCTAGATCT+AGG | - | chr5_3:55904784-55904803 | None:intergenic | 20.0% |
| ! | GAAAAACATACTCATTCAAA+AGG | + | chr5_3:55901083-55901102 | Msa0819430:CDS | 25.0% |
| ! | CAATTACCCAATATTGAAAA+GGG | + | chr5_3:55901129-55901148 | Msa0819430:CDS | 25.0% |
| ! | CTTATGAGTATAGTAGTATT+TGG | + | chr5_3:55901304-55901323 | Msa0819430:CDS | 25.0% |
| ! | GTATGTATATATGTGTAGAA+TGG | + | chr5_3:55901419-55901438 | Msa0819430:intron | 25.0% |
| ! | TCTATTTATGATTGTGGTTT+AGG | + | chr5_3:55901485-55901504 | Msa0819430:intron | 25.0% |
| !! | CTTTTTAACAAAAGATAAGC+AGG | + | chr5_3:55901589-55901608 | Msa0819430:intron | 25.0% |
| !!! | GATAAATTGAAAAGTGCTTA+TGG | + | chr5_3:55901674-55901693 | Msa0819430:intron | 25.0% |
| ! | TGTGACACATTTATTGATAT+TGG | + | chr5_3:55901718-55901737 | Msa0819430:intron | 25.0% |
| ! | AAGACGATTTAAAGATGATT+TGG | + | chr5_3:55901765-55901784 | Msa0819430:intron | 25.0% |
| !! | TAAATAAGTTGACATTGGTA+GGG | - | chr5_3:55901885-55901904 | None:intergenic | 25.0% |
| !! | TTAAATAAGTTGACATTGGT+AGG | - | chr5_3:55901886-55901905 | None:intergenic | 25.0% |
| !! | TTTTATTGCTGCACTAAATA+TGG | + | chr5_3:55901913-55901932 | Msa0819430:intron | 25.0% |
| ! | TGGATAATGTAACTTATAGA+TGG | + | chr5_3:55901933-55901952 | Msa0819430:intron | 25.0% |
| !!! | AATTTGATAAGTGCTGATTT+TGG | + | chr5_3:55902042-55902061 | Msa0819430:intron | 25.0% |
| ! | ATGGAAGTTGAACTTAAATT+GGG | + | chr5_3:55902078-55902097 | Msa0819430:CDS | 25.0% |
| ! | ATATTTGGATCTCAAACTTA+AGG | + | chr5_3:55902119-55902138 | Msa0819430:CDS | 25.0% |
| ! | ATTTCAATAAAATTGGATGG+TGG | + | chr5_3:55902165-55902184 | Msa0819430:CDS | 25.0% |
| !!! | AGTTTTGATTCATATCTAAC+AGG | + | chr5_3:55902305-55902324 | Msa0819430:intron | 25.0% |
| ! | GATGAATTTGTGCATAAAAT+TGG | - | chr5_3:55902598-55902617 | None:intergenic | 25.0% |
| !!! | ATGATGTAAGTTTTGATGTT+TGG | + | chr5_3:55902677-55902696 | Msa0819430:intron | 25.0% |
| ! | TATTTACTATGTCATTGGAT+TGG | + | chr5_3:55902819-55902838 | Msa0819430:intron | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | - | chr5_3:55902978-55902997 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | - | chr5_3:55902979-55902998 | None:intergenic | 25.0% |
| ! | TTATGATGAATTATATGGGT+TGG | + | chr5_3:55903250-55903269 | Msa0819430:intron | 25.0% |
| ! | AGAAATGACAACTTATTGTA+AGG | - | chr5_3:55903672-55903691 | None:intergenic | 25.0% |
| ! | AAATTTCTTTATGCTTTCAG+TGG | + | chr5_3:55904031-55904050 | Msa0819430:intron | 25.0% |
| ! | AATAAGTTATAAACAGCTTC+TGG | - | chr5_3:55904172-55904191 | None:intergenic | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | - | chr5_3:55904346-55904365 | None:intergenic | 25.0% |
| !!! | TGTTAATTTTTTAGGGAATG+AGG | + | chr5_3:55904745-55904764 | Msa0819430:three_prime_UTR | 25.0% |
| !!! | GTTAATTTTTTAGGGAATGA+GGG | + | chr5_3:55904746-55904765 | Msa0819430:three_prime_UTR | 25.0% |
| !!! | TTAATTTTTTAGGGAATGAG+GGG | + | chr5_3:55904747-55904766 | Msa0819430:three_prime_UTR | 25.0% |
| ! | GATCTAGATGTATAAAATAC+AGG | + | chr5_3:55904785-55904804 | Msa0819430:three_prime_UTR | 25.0% |
| !!! | AAGGTTGCATTTTGATTTGT+GGG | - | chr5_3:55900942-55900961 | None:intergenic | 30.0% |
| !!! | AAAGGTTGCATTTTGATTTG+TGG | - | chr5_3:55900943-55900962 | None:intergenic | 30.0% |
| !! | GATATGAAAGCTTGGTTTTT+GGG | - | chr5_3:55901030-55901049 | None:intergenic | 30.0% |
| TTAATAGGGATATGAAAGCT+TGG | - | chr5_3:55901038-55901057 | None:intergenic | 30.0% | |
| ! | CCTTTTCAATATTGGGTAAT+TGG | - | chr5_3:55901131-55901150 | None:intergenic | 30.0% |
| CCAATTACCCAATATTGAAA+AGG | + | chr5_3:55901128-55901147 | Msa0819430:CDS | 30.0% | |
| ! | CTTGTACCCTTTTCAATATT+GGG | - | chr5_3:55901138-55901157 | None:intergenic | 30.0% |
| ! | TCTTGTACCCTTTTCAATAT+TGG | - | chr5_3:55901139-55901158 | None:intergenic | 30.0% |
| ! | GGTTAGTTGTAATTTGAGTT+TGG | + | chr5_3:55901275-55901294 | Msa0819430:CDS | 30.0% |
| ! | GTTGTAATTTGAGTTTGGAT+TGG | + | chr5_3:55901280-55901299 | Msa0819430:CDS | 30.0% |
| GAGTATAGTAGTATTTGGTT+TGG | + | chr5_3:55901309-55901328 | Msa0819430:CDS | 30.0% | |
| ! | TTTTCGTATAAGCTATAAGC+TGG | + | chr5_3:55901621-55901640 | Msa0819430:intron | 30.0% |
| !! | CTTCATCACTGATTTAAGAT+CGG | - | chr5_3:55901748-55901767 | None:intergenic | 30.0% |
| ATACACACATCAGTTAATCT+CGG | - | chr5_3:55901829-55901848 | None:intergenic | 30.0% | |
| !!! | CTGCATGTTTTTTTAGATAC+CGG | + | chr5_3:55901849-55901868 | Msa0819430:intron | 30.0% |
| !!! | TGCATGTTTTTTTAGATACC+GGG | + | chr5_3:55901850-55901869 | Msa0819430:intron | 30.0% |
| CATGGAAGTTGAACTTAAAT+TGG | + | chr5_3:55902077-55902096 | Msa0819430:CDS | 30.0% | |
| AGTTGAACTTAAATTGGGAT+TGG | + | chr5_3:55902083-55902102 | Msa0819430:CDS | 30.0% | |
| AAATGAGCTAGAATCTGATA+TGG | - | chr5_3:55902227-55902246 | None:intergenic | 30.0% | |
| !!! | TTTCATGTGTCACTTTTATG+TGG | + | chr5_3:55902251-55902270 | Msa0819430:intron | 30.0% |
| ! | TGTGGCAGAAAACAATTTTA+CGG | + | chr5_3:55902269-55902288 | Msa0819430:intron | 30.0% |
| ATATTTGAAAAGTCTTCCGA+AGG | + | chr5_3:55902417-55902436 | Msa0819430:CDS | 30.0% | |
| GAAATTTATGCATTGGATTG+TGG | + | chr5_3:55902879-55902898 | Msa0819430:CDS | 30.0% | |
| TTATTATTCCTCAGTTGTAC+AGG | + | chr5_3:55902947-55902966 | Msa0819430:CDS | 30.0% | |
| TACAAGTTGTTGTCAATTAC+TGG | + | chr5_3:55903385-55903404 | Msa0819430:intron | 30.0% | |
| TATGCTATGCTACAATACTA+TGG | - | chr5_3:55903422-55903441 | None:intergenic | 30.0% | |
| ! | TCAGGTTTGGTCAAAATAAA+TGG | + | chr5_3:55903743-55903762 | Msa0819430:CDS | 30.0% |
| ATAAATGGAAATAACCTCGA+AGG | + | chr5_3:55903758-55903777 | Msa0819430:CDS | 30.0% | |
| !! | ACTTTGGAATGTCATTGAAA+TGG | + | chr5_3:55903798-55903817 | Msa0819430:CDS | 30.0% |
| AACATAAACCTACCTGAATA+AGG | - | chr5_3:55903850-55903869 | None:intergenic | 30.0% | |
| ! | TGTGAGATTGAGAGATTTTA+TGG | + | chr5_3:55904128-55904147 | Msa0819430:intron | 30.0% |
| TTAAGATGTCTCATTGATGA+AGG | + | chr5_3:55904377-55904396 | Msa0819430:intron | 30.0% | |
| TAAGATGTCTCATTGATGAA+GGG | + | chr5_3:55904378-55904397 | Msa0819430:intron | 30.0% | |
| TCAATAATTGTCCACATAAC+TGG | - | chr5_3:55904428-55904447 | None:intergenic | 30.0% | |
| AAGGTGAAACCATGAATAAT+GGG | - | chr5_3:55904503-55904522 | None:intergenic | 30.0% | |
| TAAGGTGAAACCATGAATAA+TGG | - | chr5_3:55904504-55904523 | None:intergenic | 30.0% | |
| AAATAACAGAAGATAGCACA+AGG | - | chr5_3:55904726-55904745 | None:intergenic | 30.0% | |
| TCCAATTACATGAGAATTCA+TGG | - | chr5_3:55904832-55904851 | None:intergenic | 30.0% | |
| !! | GGATATGAAAGCTTGGTTTT+TGG | - | chr5_3:55901031-55901050 | None:intergenic | 35.0% |
| TCCCTATTAATCACCCAAAA+CGG | + | chr5_3:55901048-55901067 | Msa0819430:CDS | 35.0% | |
| !! | ACCGTTTTGGGTGATTAATA+GGG | - | chr5_3:55901052-55901071 | None:intergenic | 35.0% |
| ! | CACGAAATTAAGACCGTTTT+GGG | - | chr5_3:55901064-55901083 | None:intergenic | 35.0% |
| ! | TCACGAAATTAAGACCGTTT+TGG | - | chr5_3:55901065-55901084 | None:intergenic | 35.0% |
| GGTACAAGAATTCCAATGTT+GGG | + | chr5_3:55901150-55901169 | Msa0819430:CDS | 35.0% | |
| AAGTAAACACTACCCAACAT+TGG | - | chr5_3:55901165-55901184 | None:intergenic | 35.0% | |
| GATTCTTCTATTGTTAAGCC+TGG | + | chr5_3:55901222-55901241 | Msa0819430:CDS | 35.0% | |
| ! | GAATTGAGATTGTTGCTTCT+GGG | + | chr5_3:55901253-55901272 | Msa0819430:CDS | 35.0% |
| ! | AATTGAGATTGTTGCTTCTG+GGG | + | chr5_3:55901254-55901273 | Msa0819430:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | + | chr5_3:55901320-55901339 | Msa0819430:CDS | 35.0% |
| !! | ATCACTGATTTAAGATCGGA+CGG | - | chr5_3:55901744-55901763 | None:intergenic | 35.0% |
| !!! | TTTTTTAGATACCGGGAATC+TGG | + | chr5_3:55901857-55901876 | Msa0819430:intron | 35.0% |
| !!! | GATAAGTGCTGATTTTGGAA+AGG | + | chr5_3:55902047-55902066 | Msa0819430:intron | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | + | chr5_3:55902325-55902344 | Msa0819430:intron | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | + | chr5_3:55902326-55902345 | Msa0819430:intron | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | + | chr5_3:55902334-55902353 | Msa0819430:CDS | 35.0% |
| AATGCTATCACCAAGAATCT+TGG | + | chr5_3:55902370-55902389 | Msa0819430:CDS | 35.0% | |
| !!! | TTGGAAGTTTTGAGTTCTTG+TGG | - | chr5_3:55902579-55902598 | None:intergenic | 35.0% |
| GAGAAATTGTTTCGATGTTC+AGG | + | chr5_3:55902855-55902874 | Msa0819430:intron | 35.0% | |
| TTCAGGCGAAATTTATGCAT+TGG | + | chr5_3:55902872-55902891 | Msa0819430:intron | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | - | chr5_3:55902913-55902932 | None:intergenic | 35.0% | |
| TATATCTTTGTCTTCTCCTC+CGG | + | chr5_3:55902999-55903018 | Msa0819430:CDS | 35.0% | |
| TCAGAGAATAAGAATGGTGA+AGG | - | chr5_3:55903189-55903208 | None:intergenic | 35.0% | |
| !! | ATGAATTATATGGGTTGGTG+TGG | + | chr5_3:55903255-55903274 | Msa0819430:intron | 35.0% |
| TGTACTTGACAACATTGTCT+TGG | - | chr5_3:55903300-55903319 | None:intergenic | 35.0% | |
| ! | ACACTATTTTCTGCAATCTG+CGG | + | chr5_3:55903452-55903471 | Msa0819430:intron | 35.0% |
| !!! | CATTTTGACTAAACAGTGTC+TGG | - | chr5_3:55903599-55903618 | None:intergenic | 35.0% |
| ATTGTAAGGTGTACAAAGAC+AGG | - | chr5_3:55903658-55903677 | None:intergenic | 35.0% | |
| AATCATCTGTGGAAACAAGA+TGG | - | chr5_3:55903717-55903736 | None:intergenic | 35.0% | |
| TCATTGAAATGGAGCAACAT+TGG | + | chr5_3:55903809-55903828 | Msa0819430:CDS | 35.0% | |
| TCTACGAATGTTCCTTATTC+AGG | + | chr5_3:55903835-55903854 | Msa0819430:CDS | 35.0% | |
| TTGTAAATTCTAGCGCACAT+AGG | + | chr5_3:55904058-55904077 | Msa0819430:intron | 35.0% | |
| TGTAAATTCTAGCGCACATA+GGG | + | chr5_3:55904059-55904078 | Msa0819430:intron | 35.0% | |
| CACATAGGGTATGTTTGAAT+TGG | + | chr5_3:55904073-55904092 | Msa0819430:intron | 35.0% | |
| ! | CTTATTTCCATTAGCTCTCT+AGG | + | chr5_3:55904186-55904205 | Msa0819430:intron | 35.0% |
| CTTAGATGTGCATTTGCATA+TGG | - | chr5_3:55904464-55904483 | None:intergenic | 35.0% | |
| GCAAATGCACATCTAAGTAA+AGG | + | chr5_3:55904467-55904486 | Msa0819430:CDS | 35.0% | |
| !! | AAACCATGAATAATGGGCAA+GGG | - | chr5_3:55904497-55904516 | None:intergenic | 35.0% |
| GCCATGAATTCTCATGTAAT+TGG | + | chr5_3:55904828-55904847 | Msa0819430:three_prime_UTR | 35.0% | |
| !! | TGAGGTTGTTGTTGGTTCAT+TGG | - | chr5_3:55900909-55900928 | None:intergenic | 40.0% |
| GTGGAAATTGAGGTTGTTGT+TGG | - | chr5_3:55900917-55900936 | None:intergenic | 40.0% | |
| ! | TTTGTGGGTTGTGGAAATTG+AGG | - | chr5_3:55900927-55900946 | None:intergenic | 40.0% |
| !!! | GCATTTTGATTTGTGGGTTG+TGG | - | chr5_3:55900936-55900955 | None:intergenic | 40.0% |
| AGTAGGAGAAGGAAGAAGAA+AGG | - | chr5_3:55900961-55900980 | None:intergenic | 40.0% | |
| AAGAGGTGAATAGTAGGAGA+AGG | - | chr5_3:55900972-55900991 | None:intergenic | 40.0% | |
| TGAAGGAAGAGGTGAATAGT+AGG | - | chr5_3:55900978-55900997 | None:intergenic | 40.0% | |
| !!! | AAAGCTTGGTTTTTGGGTTG+AGG | - | chr5_3:55901024-55901043 | None:intergenic | 40.0% |
| !! | GACCGTTTTGGGTGATTAAT+AGG | - | chr5_3:55901053-55901072 | None:intergenic | 40.0% |
| GGGTAATTGGAGTGAAACTA+TGG | - | chr5_3:55901118-55901137 | None:intergenic | 40.0% | |
| GGGTACAAGAATTCCAATGT+TGG | + | chr5_3:55901149-55901168 | Msa0819430:CDS | 40.0% | |
| ! | GGAATTGAGATTGTTGCTTC+TGG | + | chr5_3:55901252-55901271 | Msa0819430:CDS | 40.0% |
| CCTTGATCAGAAACCTTAAC+AGG | - | chr5_3:55901336-55901355 | None:intergenic | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | + | chr5_3:55901333-55901352 | Msa0819430:CDS | 40.0% | |
| AAGCTATCATACAGAACTCG+TGG | + | chr5_3:55901650-55901669 | Msa0819430:intron | 40.0% | |
| AGCCGAGCAATATCAATCAA+TGG | + | chr5_3:55901803-55901822 | Msa0819430:intron | 40.0% | |
| ! | GGCCATTGATTGATATTGCT+CGG | - | chr5_3:55901808-55901827 | None:intergenic | 40.0% |
| !! | GCTGATTTTGGAAAGGTTGA+AGG | + | chr5_3:55902054-55902073 | Msa0819430:intron | 40.0% |
| !! | TTTTGGAAAGGTTGAAGGCA+TGG | + | chr5_3:55902059-55902078 | Msa0819430:intron | 40.0% |
| TAAATTGGGATTGGAGAACC+AGG | + | chr5_3:55902092-55902111 | Msa0819430:CDS | 40.0% | |
| TGAGATCCAAATATCCTTCC+TGG | - | chr5_3:55902113-55902132 | None:intergenic | 40.0% | |
| GATCTCAAACTTAAGGACTG+TGG | + | chr5_3:55902126-55902145 | Msa0819430:CDS | 40.0% | |
| !! | GTGCATCTTGGCTTTATCAA+GGG | + | chr5_3:55902187-55902206 | Msa0819430:CDS | 40.0% |
| !! | TCTTGGCTTTATCAAGGGTA+TGG | + | chr5_3:55902192-55902211 | Msa0819430:intron | 40.0% |
| ATCACCAAGAATCTTGGAGA+AGG | + | chr5_3:55902376-55902395 | Msa0819430:CDS | 40.0% | |
| AATGCCTTCTCCAAGATTCT+TGG | - | chr5_3:55902383-55902402 | None:intergenic | 40.0% | |
| !! | ATCTTGGAGAAGGCATTACA+AGG | + | chr5_3:55902386-55902405 | Msa0819430:CDS | 40.0% |
| TTTGAAAAGTCTTCCGAAGG+AGG | + | chr5_3:55902420-55902439 | Msa0819430:CDS | 40.0% | |
| ! | TCGATTGGGTTTGAAACGAA+TGG | + | chr5_3:55902508-55902527 | Msa0819430:CDS | 40.0% |
| ! | CGATTGGGTTTGAAACGAAT+GGG | + | chr5_3:55902509-55902528 | Msa0819430:CDS | 40.0% |
| CATCAAACAGACAAGAACTC+TGG | - | chr5_3:55902745-55902764 | None:intergenic | 40.0% | |
| GTTCTTGTCTGTTTGATGTC+TGG | + | chr5_3:55902747-55902766 | Msa0819430:intron | 40.0% | |
| TGTCTGTTTGATGTCTGGTT+CGG | + | chr5_3:55902752-55902771 | Msa0819430:intron | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | + | chr5_3:55902916-55902935 | Msa0819430:CDS | 40.0% | |
| ! | TGATCTGAAATCTCCACAAC+CGG | - | chr5_3:55903021-55903040 | None:intergenic | 40.0% |
| GAGATTTCAGATCAGAAAGC+AGG | + | chr5_3:55903027-55903046 | Msa0819430:CDS | 40.0% | |
| ! | GATGATTCAAGCTTCAGGTT+TGG | + | chr5_3:55903730-55903749 | Msa0819430:intron | 40.0% |
| CGAATGTTCCTTATTCAGGT+AGG | + | chr5_3:55903839-55903858 | Msa0819430:intron | 40.0% | |
| TAGCTATCCTAGAGAGCTAA+TGG | - | chr5_3:55904196-55904215 | None:intergenic | 40.0% | |
| TTACCCTTGCCCATTATTCA+TGG | + | chr5_3:55904491-55904510 | Msa0819430:CDS | 40.0% | |
| !! | GAAACCATGAATAATGGGCA+AGG | - | chr5_3:55904498-55904517 | None:intergenic | 40.0% |
| GATTATCTCTGCGTCTTGTA+AGG | - | chr5_3:55904522-55904541 | None:intergenic | 40.0% | |
| ACATCTAGATCTAGGCATGA+TGG | - | chr5_3:55904776-55904795 | None:intergenic | 40.0% | |
| TTGTGATTGCGTGGGAATGA+AGG | - | chr5_3:55900995-55901014 | None:intergenic | 45.0% | |
| GGTTGAGATTGTGATTGCGT+GGG | - | chr5_3:55901003-55901022 | None:intergenic | 45.0% | |
| AGGTTGAGATTGTGATTGCG+TGG | - | chr5_3:55901004-55901023 | None:intergenic | 45.0% | |
| ATTGTTAAGCCTGGTGAGAG+TGG | + | chr5_3:55901231-55901250 | Msa0819430:CDS | 45.0% | |
| ATCTCAATTCCACTCTCACC+AGG | - | chr5_3:55901243-55901262 | None:intergenic | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | + | chr5_3:55901350-55901369 | Msa0819430:CDS | 45.0% | |
| GGAGAACCAGGAAGGATATT+TGG | + | chr5_3:55902104-55902123 | Msa0819430:CDS | 45.0% | |
| ! | AATTGGATGGTGGTGCATCT+TGG | + | chr5_3:55902175-55902194 | Msa0819430:CDS | 45.0% |
| !! | GGTGCATCTTGGCTTTATCA+AGG | + | chr5_3:55902186-55902205 | Msa0819430:CDS | 45.0% |
| AACGAAGAGTGATCATCGAC+CGG | - | chr5_3:55902448-55902467 | None:intergenic | 45.0% | |
| TTACTGAGTGAGTCGTCGAT+TGG | + | chr5_3:55902493-55902512 | Msa0819430:CDS | 45.0% | |
| ! | TACTGAGTGAGTCGTCGATT+GGG | + | chr5_3:55902494-55902513 | Msa0819430:CDS | 45.0% |
| GCAGAGGTTAGGAATAGGTA+GGG | - | chr5_3:55902557-55902576 | None:intergenic | 45.0% | |
| TTGTGGCAGAGGTTAGGAAT+AGG | - | chr5_3:55902562-55902581 | None:intergenic | 45.0% | |
| !!! | GTTTTGAGTTCTTGTGGCAG+AGG | - | chr5_3:55902573-55902592 | None:intergenic | 45.0% |
| AACAGCCTCGTCTAAAGAGA+TGG | - | chr5_3:55902632-55902651 | None:intergenic | 45.0% | |
| CAGACAAGAACTCTGGATCA+TGG | - | chr5_3:55902738-55902757 | None:intergenic | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | + | chr5_3:55902920-55902939 | Msa0819430:CDS | 45.0% | |
| GGGTATTTCCTGTACAACTG+AGG | - | chr5_3:55902958-55902977 | None:intergenic | 45.0% | |
| ACCAGTAGCATGCATCTCAT+TGG | + | chr5_3:55903104-55903123 | Msa0819430:CDS | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | - | chr5_3:55903108-55903127 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | + | chr5_3:55903108-55903127 | Msa0819430:intron | 45.0% | |
| CCTGAAGCTTGAATCATCTG+TGG | - | chr5_3:55903728-55903747 | None:intergenic | 45.0% | |
| CCACAGATGATTCAAGCTTC+AGG | + | chr5_3:55903725-55903744 | Msa0819430:intron | 45.0% | |
| !! | CTCGAAGGTACCATCAGATT+GGG | + | chr5_3:55903773-55903792 | Msa0819430:CDS | 45.0% |
| ACCATCAGATTGGGTGACTT+TGG | + | chr5_3:55903782-55903801 | Msa0819430:CDS | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | - | chr5_3:55903786-55903805 | None:intergenic | 45.0% | |
| ! | TTTTCCTGCAGCCAGTTATG+TGG | + | chr5_3:55904414-55904433 | Msa0819430:intron | 45.0% |
| TTGCGTGGGAATGAAGGAAG+AGG | - | chr5_3:55900989-55901008 | None:intergenic | 50.0% | |
| TTGGTAGGGATCCAGATTCC+CGG | - | chr5_3:55901871-55901890 | None:intergenic | 50.0% | |
| TTGGGATTGGAGAACCAGGA+AGG | + | chr5_3:55902096-55902115 | Msa0819430:CDS | 50.0% | |
| AAGTCTTCCGAAGGAGGTTC+CGG | + | chr5_3:55902426-55902445 | Msa0819430:CDS | 50.0% | |
| GGCAGAGGTTAGGAATAGGT+AGG | - | chr5_3:55902558-55902577 | None:intergenic | 50.0% | |
| GAGTTCTTGTGGCAGAGGTT+AGG | - | chr5_3:55902568-55902587 | None:intergenic | 50.0% | |
| GCTAGCCATCTCTTTAGACG+AGG | + | chr5_3:55902624-55902643 | Msa0819430:CDS | 50.0% | |
| TTTGTCTTCTCCTCCGGTTG+TGG | + | chr5_3:55903005-55903024 | Msa0819430:CDS | 50.0% | |
| ! | TCTGAAATCTCCACAACCGG+AGG | - | chr5_3:55903018-55903037 | None:intergenic | 50.0% |
| ACTATAGCGCTACAACGCAG+CGG | + | chr5_3:55903321-55903340 | Msa0819430:intron | 50.0% | |
| CCAATCTGATGGTACCTTCG+AGG | - | chr5_3:55903775-55903794 | None:intergenic | 50.0% | |
| !! | CCTCGAAGGTACCATCAGAT+TGG | + | chr5_3:55903772-55903791 | Msa0819430:CDS | 50.0% |
| TTGTCCACATAACTGGCTGC+AGG | - | chr5_3:55904421-55904440 | None:intergenic | 50.0% | |
| TCATCGACCGGAACCTCCTT+CGG | - | chr5_3:55902436-55902455 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55900900 | 55904884 | 55900900 | ID=Msa0819430;Name=Msa0819430 |
| chr5_3 | mRNA | 55900900 | 55904884 | 55900900 | ID=Msa0819430-mRNA-1;Parent=Msa0819430;Name=Msa0819430-mRNA-1;_AED=0.16;_eAED=0.16;_QI=52|1|1|1|1|1|6|265|494 |
| chr5_3 | exon | 55900900 | 55901371 | 55900900 | ID=Msa0819430-mRNA-1:exon:16910;Parent=Msa0819430-mRNA-1 |
| chr5_3 | exon | 55902069 | 55902208 | 55902069 | ID=Msa0819430-mRNA-1:exon:16911;Parent=Msa0819430-mRNA-1 |
| chr5_3 | exon | 55902327 | 55902681 | 55902327 | ID=Msa0819430-mRNA-1:exon:16912;Parent=Msa0819430-mRNA-1 |
| chr5_3 | exon | 55902877 | 55903125 | 55902877 | ID=Msa0819430-mRNA-1:exon:16913;Parent=Msa0819430-mRNA-1 |
| chr5_3 | exon | 55903731 | 55903856 | 55903731 | ID=Msa0819430-mRNA-1:exon:16914;Parent=Msa0819430-mRNA-1 |
| chr5_3 | exon | 55904425 | 55904884 | 55904425 | ID=Msa0819430-mRNA-1:exon:16915;Parent=Msa0819430-mRNA-1 |
| chr5_3 | five_prime_UTR | 55900900 | 55900951 | 55900900 | ID=Msa0819430-mRNA-1:five_prime_utr;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55900952 | 55901371 | 55900952 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55902069 | 55902208 | 55902069 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55902327 | 55902681 | 55902327 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55902877 | 55903125 | 55902877 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55903731 | 55903856 | 55903731 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | CDS | 55904425 | 55904619 | 55904425 | ID=Msa0819430-mRNA-1:cds;Parent=Msa0819430-mRNA-1 |
| chr5_3 | three_prime_UTR | 55904620 | 55904884 | 55904620 | ID=Msa0819430-mRNA-1:three_prime_utr;Parent=Msa0819430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
