Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738940 | XP_003616827.2 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 973 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738940 | sp|Q9MAU5|Y1049_ARATH | 59.565 | 460 | 184 | 2 | 30 | 489 | 27 | 484 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738940 | G7K7F5 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 973 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0738940 | -0.807131 | 5.871243e-50 | -8.615850e-47 |
| Msa0007080 | Msa0738940 | 0.815018 | 1.145907e-51 | -8.615850e-47 |
| Msa0027390 | Msa0738940 | 0.802666 | 5.033759e-49 | -8.615850e-47 |
| Msa0048000 | Msa0738940 | 0.832945 | 7.075047e-56 | -8.615850e-47 |
| Msa0050760 | Msa0738940 | 0.821424 | 4.068030e-53 | -8.615850e-47 |
| Msa0102750 | Msa0738940 | 0.807762 | 4.313470e-50 | -8.615850e-47 |
| Msa0108850 | Msa0738940 | 0.802671 | 5.023224e-49 | -8.615850e-47 |
| Msa0610670 | Msa0738940 | 0.803779 | 2.962167e-49 | -8.615850e-47 |
| Msa0651190 | Msa0738940 | 0.805021 | 1.632463e-49 | -8.615850e-47 |
| Msa0651270 | Msa0738940 | 0.824941 | 6.144526e-54 | -8.615850e-47 |
| Msa0657970 | Msa0738940 | 0.806838 | 6.772126e-50 | -8.615850e-47 |
| Msa0658570 | Msa0738940 | 0.819515 | 1.115466e-52 | -8.615850e-47 |
| Msa0677080 | Msa0738940 | 0.806786 | 6.944171e-50 | -8.615850e-47 |
| Msa0691050 | Msa0738940 | 0.811343 | 7.340688e-51 | -8.615850e-47 |
| Msa0692230 | Msa0738940 | 0.811349 | 7.319110e-51 | -8.615850e-47 |
| Msa0693380 | Msa0738940 | 0.832365 | 9.854565e-56 | -8.615850e-47 |
| Msa0696410 | Msa0738940 | 0.809855 | 1.539107e-50 | -8.615850e-47 |
| Msa0703490 | Msa0738940 | 0.815287 | 9.987895e-52 | -8.615850e-47 |
| Msa0738940 | Msa0783330 | 0.824181 | 9.277078e-54 | -8.615850e-47 |
| Msa0738940 | Msa0790510 | 0.807813 | 4.207078e-50 | -8.615850e-47 |
| Msa0738940 | Msa0819430 | 0.879759 | 9.585958e-70 | -8.615850e-47 |
| Msa0738940 | Msa0829620 | 0.821125 | 4.766775e-53 | -8.615850e-47 |
| Msa0738940 | Msa0859450 | 0.881956 | 1.558809e-70 | -8.615850e-47 |
| Msa0738940 | Msa0867890 | 0.823248 | 1.533810e-53 | -8.615850e-47 |
| Msa0738940 | Msa0870530 | 0.818376 | 2.024820e-52 | -8.615850e-47 |
| Msa0738940 | Msa0893810 | 0.802595 | 5.206252e-49 | -8.615850e-47 |
| Msa0738940 | Msa0903700 | 0.806249 | 9.018035e-50 | -8.615850e-47 |
| Msa0738940 | Msa0908050 | 0.806420 | 8.299859e-50 | -8.615850e-47 |
| Msa0738940 | Msa0908170 | 0.847341 | 1.229425e-59 | -8.615850e-47 |
| Msa0738940 | Msa0910980 | -0.820770 | 5.755236e-53 | -8.615850e-47 |
| Msa0738940 | Msa0965520 | 0.806474 | 8.083286e-50 | -8.615850e-47 |
| Msa0738940 | Msa0973150 | 0.811499 | 6.791290e-51 | -8.615850e-47 |
| Msa0738940 | Msa0982240 | 0.819501 | 1.123616e-52 | -8.615850e-47 |
| Msa0738940 | Msa1005410 | 0.816515 | 5.315272e-52 | -8.615850e-47 |
| Msa0738940 | Msa1006850 | 0.814351 | 1.610466e-51 | -8.615850e-47 |
| Msa0738940 | Msa1021340 | 0.800068 | 1.713919e-48 | -8.615850e-47 |
| Msa0738940 | Msa1021510 | 0.822292 | 2.561339e-53 | -8.615850e-47 |
| Msa0738940 | Msa1037700 | -0.828240 | 1.003386e-54 | -8.615850e-47 |
| Msa0738940 | Msa1068200 | -0.824998 | 5.955289e-54 | -8.615850e-47 |
| Msa0738940 | Msa1070690 | 0.815299 | 9.926864e-52 | -8.615850e-47 |
| Msa0738940 | Msa1080160 | 0.833923 | 4.035204e-56 | -8.615850e-47 |
| Msa0738940 | Msa1082500 | 0.829306 | 5.542427e-55 | -8.615850e-47 |
| Msa0738940 | Msa1084260 | 0.827035 | 1.954280e-54 | -8.615850e-47 |
| Msa0738940 | Msa1085300 | 0.805071 | 1.593572e-49 | -8.615850e-47 |
| Msa0738940 | Msa1092090 | 0.802644 | 5.088613e-49 | -8.615850e-47 |
| Msa0738940 | Msa1100480 | 0.805758 | 1.143540e-49 | -8.615850e-47 |
| Msa0738940 | Msa1105500 | 0.808777 | 2.621174e-50 | -8.615850e-47 |
| Msa0738940 | Msa1130270 | -0.804590 | 2.007811e-49 | -8.615850e-47 |
| Msa0738940 | Msa1156340 | -0.809213 | 2.114335e-50 | -8.615850e-47 |
| Msa0738940 | Msa1158660 | 0.804748 | 1.861444e-49 | -8.615850e-47 |
| Msa0738940 | Msa1162550 | -0.802000 | 6.904787e-49 | -8.615850e-47 |
| Msa0738940 | Msa1170800 | 0.812083 | 5.068008e-51 | -8.615850e-47 |
| Msa0738940 | Msa1185980 | 0.809080 | 2.257638e-50 | -8.615850e-47 |
| Msa0738940 | Msa1214880 | 0.805255 | 1.458128e-49 | -8.615850e-47 |
| Msa0738940 | Msa1217810 | 0.801466 | 8.886051e-49 | -8.615850e-47 |
| Msa0738940 | Msa1227330 | 0.803080 | 4.135455e-49 | -8.615850e-47 |
| Msa0738940 | Msa1239720 | 0.803421 | 3.514281e-49 | -8.615850e-47 |
| Msa0738940 | Msa1247030 | 0.820504 | 6.623468e-53 | -8.615850e-47 |
| Msa0738940 | Msa1267060 | 0.803071 | 4.152861e-49 | -8.615850e-47 |
| Msa0738940 | Msa1267610 | 0.810403 | 1.173097e-50 | -8.615850e-47 |
| Msa0738940 | Msa1317580 | 0.819250 | 1.282064e-52 | -8.615850e-47 |
| Msa0738940 | Msa1318240 | 0.810750 | 9.870243e-51 | -8.615850e-47 |
| Msa0738940 | Msa1329700 | 0.813336 | 2.695532e-51 | -8.615850e-47 |
| Msa0738940 | Msa1365040 | -0.809046 | 2.295829e-50 | -8.615850e-47 |
| Msa0738940 | Msa1376890 | 0.816496 | 5.367324e-52 | -8.615850e-47 |
| Msa0738940 | Msa1379850 | 0.813822 | 2.106750e-51 | -8.615850e-47 |
| Msa0738940 | Msa1384350 | 0.820733 | 5.868270e-53 | -8.615850e-47 |
| Msa0738940 | Msa1392260 | 0.825740 | 3.974350e-54 | -8.615850e-47 |
| Msa0738940 | Msa1393040 | 0.801355 | 9.362036e-49 | -8.615850e-47 |
| Msa0738940 | Msa1402270 | 0.819962 | 8.816411e-53 | -8.615850e-47 |
| Msa0738940 | Msa1404540 | 0.835226 | 1.898649e-56 | -8.615850e-47 |
| Msa0738940 | Msa1410210 | 0.810417 | 1.164845e-50 | -8.615850e-47 |
| Msa0738940 | Msa1419110 | 0.800400 | 1.466957e-48 | -8.615850e-47 |
| Msa0738940 | Msa1429900 | 0.816642 | 4.977545e-52 | -8.615850e-47 |
| Msa0738940 | Msa1431060 | 0.832073 | 1.163769e-55 | -8.615850e-47 |
| Msa0738940 | Msa1435400 | 0.827489 | 1.520756e-54 | -8.615850e-47 |
| Msa0738940 | Msa1440600 | 0.821178 | 4.634482e-53 | -8.615850e-47 |
| Msa0738940 | Msa1440940 | 0.839065 | 1.979500e-57 | -8.615850e-47 |
| Msa0738940 | Msa1447150 | 0.809356 | 1.970192e-50 | -8.615850e-47 |
| Msa0738940 | Msa1451620 | -0.808334 | 3.258788e-50 | -8.615850e-47 |
| Msa0738940 | Msa1454860 | 0.810988 | 8.765611e-51 | -8.615850e-47 |
| Msa0738940 | Msa1457430 | 0.807307 | 5.388864e-50 | -8.615850e-47 |
| Msa0738940 | Msa1457670 | -0.807593 | 4.684786e-50 | -8.615850e-47 |
| Msa0738940 | Msa1460890 | 0.814333 | 1.625076e-51 | -8.615850e-47 |
| Msa0122590 | Msa0738940 | 0.807879 | 4.073672e-50 | -8.615850e-47 |
| Msa0140860 | Msa0738940 | 0.808187 | 3.503812e-50 | -8.615850e-47 |
| Msa0140910 | Msa0738940 | 0.805193 | 1.502001e-49 | -8.615850e-47 |
| Msa0144790 | Msa0738940 | 0.805046 | 1.612771e-49 | -8.615850e-47 |
| Msa0151950 | Msa0738940 | 0.805362 | 1.384711e-49 | -8.615850e-47 |
| Msa0169860 | Msa0738940 | 0.804306 | 2.301360e-49 | -8.615850e-47 |
| Msa0188830 | Msa0738940 | 0.818692 | 1.716596e-52 | -8.615850e-47 |
| Msa0191250 | Msa0738940 | 0.827040 | 1.948057e-54 | -8.615850e-47 |
| Msa0213040 | Msa0738940 | 0.801583 | 8.406541e-49 | -8.615850e-47 |
| Msa0217400 | Msa0738940 | 0.822640 | 2.125757e-53 | -8.615850e-47 |
| Msa0226290 | Msa0738940 | 0.800029 | 1.745491e-48 | -8.615850e-47 |
| Msa0234440 | Msa0738940 | 0.826864 | 2.146276e-54 | -8.615850e-47 |
| Msa0376590 | Msa0738940 | 0.821285 | 4.380296e-53 | -8.615850e-47 |
| Msa0389340 | Msa0738940 | 0.809833 | 1.555950e-50 | -8.615850e-47 |
| Msa0393710 | Msa0738940 | 0.805393 | 1.364033e-49 | -8.615850e-47 |
| Msa0409200 | Msa0738940 | 0.806919 | 6.509102e-50 | -8.615850e-47 |
| Msa0414170 | Msa0738940 | 0.802050 | 6.741984e-49 | -8.615850e-47 |
| Msa0436370 | Msa0738940 | 0.812299 | 4.546675e-51 | -8.615850e-47 |
| Msa0445280 | Msa0738940 | 0.834686 | 2.597223e-56 | -8.615850e-47 |
| Msa0448550 | Msa0738940 | -0.809217 | 2.110394e-50 | -8.615850e-47 |
| Msa0464900 | Msa0738940 | 0.853391 | 2.464285e-61 | -8.615850e-47 |
| Msa0465680 | Msa0738940 | -0.811411 | 7.095203e-51 | -8.615850e-47 |
| Msa0473240 | Msa0738940 | 0.815801 | 7.673234e-52 | -8.615850e-47 |
| Msa0480800 | Msa0738940 | 0.807544 | 4.798670e-50 | -8.615850e-47 |
| Msa0243250 | Msa0738940 | 0.801987 | 6.946082e-49 | -8.615850e-47 |
| Msa0243710 | Msa0738940 | 0.816049 | 6.755219e-52 | -8.615850e-47 |
| Msa0250670 | Msa0738940 | 0.802161 | 6.397151e-49 | -8.615850e-47 |
| Msa0258760 | Msa0738940 | 0.805426 | 1.342590e-49 | -8.615850e-47 |
| Msa0260810 | Msa0738940 | 0.838002 | 3.724384e-57 | -8.615850e-47 |
| Msa0266000 | Msa0738940 | -0.801912 | 7.196880e-49 | -8.615850e-47 |
| Msa0270100 | Msa0738940 | 0.825914 | 3.615301e-54 | -8.615850e-47 |
| Msa0272730 | Msa0738940 | 0.816786 | 4.621774e-52 | -8.615850e-47 |
| Msa0276920 | Msa0738940 | 0.804335 | 2.269844e-49 | -8.615850e-47 |
| Msa0296560 | Msa0738940 | 0.809748 | 1.623482e-50 | -8.615850e-47 |
| Msa0311860 | Msa0738940 | 0.801459 | 8.916741e-49 | -8.615850e-47 |
| Msa0313270 | Msa0738940 | 0.815457 | 9.154723e-52 | -8.615850e-47 |
| Msa0331840 | Msa0738940 | 0.813920 | 2.004823e-51 | -8.615850e-47 |
| Msa0335040 | Msa0738940 | 0.822270 | 2.591359e-53 | -8.615850e-47 |
| Msa0338110 | Msa0738940 | 0.802894 | 4.518321e-49 | -8.615850e-47 |
| Msa0356890 | Msa0738940 | -0.804095 | 2.546125e-49 | -8.615850e-47 |
| Msa0484780 | Msa0738940 | 0.841846 | 3.708568e-58 | -8.615850e-47 |
| Msa0516370 | Msa0738940 | 0.826433 | 2.720240e-54 | -8.615850e-47 |
| Msa0547400 | Msa0738940 | 0.818751 | 1.664221e-52 | -8.615850e-47 |
| Msa0553460 | Msa0738940 | 0.811598 | 6.461014e-51 | -8.615850e-47 |
| Msa0555020 | Msa0738940 | 0.805279 | 1.441652e-49 | -8.615850e-47 |
| Msa0558690 | Msa0738940 | 0.806361 | 8.538799e-50 | -8.615850e-47 |
| Msa0567020 | Msa0738940 | 0.826711 | 2.335591e-54 | -8.615850e-47 |
| Msa0570640 | Msa0738940 | 0.814254 | 1.691497e-51 | -8.615850e-47 |
| Msa0572420 | Msa0738940 | 0.833805 | 4.318497e-56 | -8.615850e-47 |
| Msa0572480 | Msa0738940 | 0.821158 | 4.685277e-53 | -8.615850e-47 |
| Msa0579100 | Msa0738940 | 0.815933 | 7.172275e-52 | -8.615850e-47 |
| Msa0579130 | Msa0738940 | 0.812285 | 4.579006e-51 | -8.615850e-47 |
| Msa0579200 | Msa0738940 | 0.810544 | 1.093604e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738940 | MtrunA17_Chr5g0438581 | 97.368 | 494 | 13 | 0 | 1 | 494 | 1 | 494 | 0.0 | 973 |
| Msa0738940 | MtrunA17_Chr5g0445001 | 49.571 | 466 | 231 | 3 | 29 | 494 | 24 | 485 | 2.14e-161 | 466 |
| Msa0738940 | MtrunA17_Chr3g0100111 | 44.559 | 487 | 267 | 3 | 6 | 492 | 260 | 743 | 1.08e-137 | 414 |
| Msa0738940 | MtrunA17_Chr3g0100111 | 39.655 | 116 | 69 | 1 | 25 | 140 | 22 | 136 | 1.27e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738940 | AT1G04970.1 | 59.565 | 460 | 184 | 2 | 30 | 489 | 27 | 484 | 0.0 | 578 |
| Msa0738940 | AT1G04970.2 | 60.000 | 350 | 139 | 1 | 140 | 489 | 10 | 358 | 1.74e-155 | 447 |
| Msa0738940 | AT1G04970.3 | 60.000 | 350 | 139 | 1 | 140 | 489 | 10 | 358 | 1.74e-155 | 447 |
| Msa0738940 | AT3G20270.5 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 4.32e-116 | 352 |
| Msa0738940 | AT3G20270.2 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 4.32e-116 | 352 |
| Msa0738940 | AT3G20270.4 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 4.32e-116 | 352 |
| Msa0738940 | AT3G20270.1 | 37.090 | 488 | 285 | 4 | 4 | 481 | 241 | 716 | 8.95e-113 | 350 |
| Msa0738940 | AT3G20270.3 | 37.090 | 488 | 285 | 4 | 4 | 481 | 241 | 716 | 8.95e-113 | 350 |
| Msa0738940 | AT3G20270.6 | 36.842 | 437 | 254 | 4 | 4 | 430 | 34 | 458 | 1.94e-99 | 307 |
Find 113 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAAGTTGAACTTAAAT+TGG | 0.156959 | 5_1:+57003671 | Msa0738940:CDS |
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5_1:+57003752 | Msa0738940:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5_1:-57004570 | None:intergenic |
| GATGAATTTGTGCATAAAAT+TGG | 0.186810 | 5_1:-57004189 | None:intergenic |
| TCAGGTTTGGTCAAAATAAA+TGG | 0.203844 | 5_1:+57005338 | Msa0738940:CDS |
| GGAATTGAGATTGTTGCTTC+TGG | 0.206164 | 5_1:+57002848 | Msa0738940:CDS |
| GGAGAACCAGGAAGGATATT+TGG | 0.213932 | 5_1:+57003698 | Msa0738940:CDS |
| TCTACGAATGTTCCTTATTC+AGG | 0.249285 | 5_1:+57005430 | Msa0738940:CDS |
| CTTATGAGTATAGTAGTATT+TGG | 0.262312 | 5_1:+57002900 | Msa0738940:CDS |
| TAAGGTGAAACCATGAATAA+TGG | 0.283240 | 5_1:-57006096 | None:intergenic |
| AATGCCTTCTCCAAGATTCT+TGG | 0.286219 | 5_1:-57003974 | None:intergenic |
| TCAATAATTGTCCACATAAC+TGG | 0.286728 | 5_1:-57006020 | None:intergenic |
| GCCATGAATTCTCATGTAAT+TGG | 0.288094 | 5_1:+57006421 | Msa0738940:three_prime_UTR |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5_1:-57004569 | None:intergenic |
| TCACGAAATTAAGACCGTTT+TGG | 0.299456 | 5_1:-57002658 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5_1:-57005442 | None:intergenic |
| CCACAGATGATTCAAGCTTC+AGG | 0.313074 | 5_1:+57005320 | Msa0738940:intron |
| TCCAATTACATGAGAATTCA+TGG | 0.329077 | 5_1:-57006422 | None:intergenic |
| GAGGTTGTTGGTTGTTCATT+TGG | 0.331922 | 5_1:-57002501 | None:intergenic |
| GGTTAGTTGTAATTTGAGTT+TGG | 0.343049 | 5_1:+57002871 | Msa0738940:CDS |
| CTTAGATGTGCATTTGCATA+TGG | 0.343364 | 5_1:-57006056 | None:intergenic |
| TGAGATCCAAATATCCTTCC+TGG | 0.345049 | 5_1:-57003704 | None:intergenic |
| AAGTCTTCCGAAGGAGGTTC+CGG | 0.360461 | 5_1:+57004020 | Msa0738940:CDS |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5_1:+57002929 | Msa0738940:CDS |
| CCAATTCAGATCTGCGACTA+AGG | 0.374932 | 5_1:-57006467 | None:intergenic |
| TGAAGGAAGAGGTGAATAGT+AGG | 0.380432 | 5_1:-57002571 | None:intergenic |
| TTACCCTTGCCCATTATTCA+TGG | 0.394754 | 5_1:+57006086 | Msa0738940:CDS |
| GAATTGAGATTGTTGCTTCT+GGG | 0.399939 | 5_1:+57002849 | Msa0738940:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.399972 | 5_1:+57002916 | Msa0738940:CDS |
| ATGGAAGTTGAACTTAAATT+GGG | 0.400019 | 5_1:+57003672 | Msa0738940:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5_1:+57005377 | Msa0738940:CDS |
| GATCTAGATGTATAAAATAC+TGG | 0.404430 | 5_1:+57006378 | Msa0738940:three_prime_UTR |
| ATATTTGGATCTCAAACTTA+AGG | 0.406500 | 5_1:+57003713 | Msa0738940:CDS |
| AATGCTATCACCAAGAATCT+TGG | 0.412923 | 5_1:+57003964 | Msa0738940:CDS |
| GGGTAATTGGAGTGAAACTA+TGG | 0.413154 | 5_1:-57002711 | None:intergenic |
| GATTATCTCTGCGTCTTGTA+AGG | 0.416518 | 5_1:-57006114 | None:intergenic |
| CCAATTACCCAATATTGAAA+AGG | 0.416560 | 5_1:+57002724 | Msa0738940:CDS |
| AGTTGAACTTAAATTGGGAT+TGG | 0.424622 | 5_1:+57003677 | Msa0738940:CDS |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5_1:+57002946 | Msa0738940:CDS |
| TATATCTTTGTCTTCTCCTC+CGG | 0.426541 | 5_1:+57004593 | Msa0738940:CDS |
| TCATCGACCGGAACCTCCTT+CGG | 0.427115 | 5_1:-57004027 | None:intergenic |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5_1:-57002929 | None:intergenic |
| GAGTTCTTGTGGCAGAGGTT+AGG | 0.432697 | 5_1:-57004159 | None:intergenic |
| TTCAGGCGAAATTTATGCAT+TGG | 0.438077 | 5_1:+57004466 | Msa0738940:intron |
| AAGGTGAAACCATGAATAAT+GGG | 0.440200 | 5_1:-57006095 | None:intergenic |
| TTGTGGCAGAGGTTAGGAAT+AGG | 0.440618 | 5_1:-57004153 | None:intergenic |
| GATGATTCAAGCTTCAGGTT+TGG | 0.443327 | 5_1:+57005325 | Msa0738940:intron |
| GTTGTAATTTGAGTTTGGAT+TGG | 0.444738 | 5_1:+57002876 | Msa0738940:CDS |
| GGTGCATCTTGGCTTTATCA+AGG | 0.447248 | 5_1:+57003780 | Msa0738940:CDS |
| TTATTATTCCTCAGTTGTAC+AGG | 0.451409 | 5_1:+57004541 | Msa0738940:CDS |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5_1:+57005393 | Msa0738940:CDS |
| TTTGTCTTCTCCTCCGGTTG+TGG | 0.464481 | 5_1:+57004599 | Msa0738940:CDS |
| CGATTGGGTTTGAAACGAAT+GGG | 0.465684 | 5_1:+57004103 | Msa0738940:CDS |
| TACTAAGTGAGTCGTCGATT+GGG | 0.466821 | 5_1:+57004088 | Msa0738940:CDS |
| TGATCTGAAATCTCCACAAC+CGG | 0.477470 | 5_1:-57004612 | None:intergenic |
| TTACTAAGTGAGTCGTCGAT+TGG | 0.479167 | 5_1:+57004087 | Msa0738940:CDS |
| ACCAGTAGCATGCATCTCAT+TGG | 0.482084 | 5_1:+57004698 | Msa0738940:CDS |
| GTTGTGGAAATTGAGGTTGT+TGG | 0.482217 | 5_1:-57002513 | None:intergenic |
| GAGTATAGTAGTATTTGGTT+TGG | 0.487613 | 5_1:+57002905 | Msa0738940:CDS |
| TCGATTGGGTTTGAAACGAA+TGG | 0.488846 | 5_1:+57004102 | Msa0738940:CDS |
| AGTAGGAGAAGGAAGAAGAA+AGG | 0.489173 | 5_1:-57002554 | None:intergenic |
| TTAATAGGGATATGAAAGCT+TGG | 0.490488 | 5_1:-57002631 | None:intergenic |
| CTCGTAGGTACCATCAGATT+GGG | 0.490558 | 5_1:+57005368 | Msa0738940:CDS |
| CCTCGTAGGTACCATCAGAT+TGG | 0.492012 | 5_1:+57005367 | Msa0738940:CDS |
| GATTCTTCTATTGTTAAGCC+TGG | 0.493921 | 5_1:+57002818 | Msa0738940:CDS |
| GGTACAAGAATTCCAATGTT+GGG | 0.495246 | 5_1:+57002746 | Msa0738940:CDS |
| ACCAATGAGATGCATGCTAC+TGG | 0.496446 | 5_1:-57004699 | None:intergenic |
| CAATTACCCAATATTGAAAA+GGG | 0.507561 | 5_1:+57002725 | Msa0738940:CDS |
| GATATTTCAATAAAATTGGA+TGG | 0.510412 | 5_1:+57003756 | Msa0738940:CDS |
| TTGTGATTGCGTGGGAATGA+AGG | 0.512955 | 5_1:-57002588 | None:intergenic |
| GCAAATGCACATCTAAGTAA+AGG | 0.513079 | 5_1:+57006062 | Msa0738940:CDS |
| GAAATTTATGCATTGGATTG+TGG | 0.522169 | 5_1:+57004473 | Msa0738940:CDS |
| AATTGAGATTGTTGCTTCTG+GGG | 0.524103 | 5_1:+57002850 | Msa0738940:CDS |
| TCCCTATTAATCACCCAAAA+CGG | 0.526549 | 5_1:+57002644 | Msa0738940:CDS |
| AAGAGGTGAATAGTAGGAGA+AGG | 0.537307 | 5_1:-57002565 | None:intergenic |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5_1:+57004510 | Msa0738940:CDS |
| GTGCATCTTGGCTTTATCAA+GGG | 0.540311 | 5_1:+57003781 | Msa0738940:CDS |
| AATTGGATGGTGGTGCATCT+TGG | 0.543201 | 5_1:+57003769 | Msa0738940:CDS |
| ATTGTTAAGCCTGGTGAGAG+TGG | 0.546066 | 5_1:+57002827 | Msa0738940:CDS |
| TCATTGAAATGGAGCAACAT+TGG | 0.550438 | 5_1:+57005404 | Msa0738940:CDS |
| ACATCTAGATCTAGGCATGA+TGG | 0.553285 | 5_1:-57006366 | None:intergenic |
| TTTGAAAAGTCTTCCGAAGG+AGG | 0.555501 | 5_1:+57004014 | Msa0738940:CDS |
| GGGTACAAGAATTCCAATGT+TGG | 0.558223 | 5_1:+57002745 | Msa0738940:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5_1:-57004504 | None:intergenic |
| GGCAGAGGTTAGGAATAGGT+AGG | 0.566366 | 5_1:-57004149 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+AGG | 0.576449 | 5_1:+57004621 | Msa0738940:CDS |
| ATCTTGGAGAAGGCATTACA+AGG | 0.578899 | 5_1:+57003980 | Msa0738940:CDS |
| AACAGCCTCGTCTAAAGAGA+TGG | 0.579922 | 5_1:-57004223 | None:intergenic |
| ATCTCAATTCCACTCTCACC+AGG | 0.579964 | 5_1:-57002836 | None:intergenic |
| TAAATTGGGATTGGAGAACC+AGG | 0.581245 | 5_1:+57003686 | Msa0738940:CDS |
| TTTGTGGGTTGTGGAAATTG+AGG | 0.582939 | 5_1:-57002520 | None:intergenic |
| GCAGAGGTTAGGAATAGGTA+GGG | 0.583860 | 5_1:-57004148 | None:intergenic |
| GAAACCATGAATAATGGGCA+AGG | 0.588237 | 5_1:-57006090 | None:intergenic |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5_1:+57004514 | Msa0738940:CDS |
| AGGTTGAGATTGTGATTGCG+TGG | 0.593779 | 5_1:-57002597 | None:intergenic |
| AACGAAGAGTGATCATCGAC+CGG | 0.595323 | 5_1:-57004039 | None:intergenic |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5_1:-57005378 | None:intergenic |
| ATCACCAAGAATCTTGGAGA+AGG | 0.605412 | 5_1:+57003970 | Msa0738940:CDS |
| AAAACTTACATCATAATACA+AGG | 0.616369 | 5_1:-57004262 | None:intergenic |
| TTGCGTGGGAATGAAGGAAG+AGG | 0.616471 | 5_1:-57002582 | None:intergenic |
| ATAAATGGAAATAACCTCGT+AGG | 0.618799 | 5_1:+57005353 | Msa0738940:CDS |
| ATATTTGAAAAGTCTTCCGA+AGG | 0.620652 | 5_1:+57004011 | Msa0738940:CDS |
| AAGTAAACACTACCCAACAT+TGG | 0.621139 | 5_1:-57002758 | None:intergenic |
| GGGTATTTCCTGTACAACTG+AGG | 0.624337 | 5_1:-57004549 | None:intergenic |
| ATTTCAATAAAATTGGATGG+TGG | 0.629003 | 5_1:+57003759 | Msa0738940:CDS |
| GGTTGAGATTGTGATTGCGT+GGG | 0.632094 | 5_1:-57002596 | None:intergenic |
| AAACCATGAATAATGGGCAA+GGG | 0.633824 | 5_1:-57006089 | None:intergenic |
| TTGGGATTGGAGAACCAGGA+AGG | 0.639874 | 5_1:+57003690 | Msa0738940:CDS |
| GATCTCAAACTTAAGGACTG+TGG | 0.659076 | 5_1:+57003720 | Msa0738940:CDS |
| TCTGAAATCTCCACAACCGG+AGG | 0.673824 | 5_1:-57004609 | None:intergenic |
| GCTAGCCATCTCTTTAGACG+AGG | 0.696866 | 5_1:+57004218 | Msa0738940:CDS |
| AAATAACAGAAGATAGCACA+AGG | 0.709739 | 5_1:-57006316 | None:intergenic |
| CCAATCTGATGGTACCTACG+AGG | 0.737067 | 5_1:-57005367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTTCAATAAAAT+TGG | + | chr5_1:57003752-57003771 | Msa0738940:CDS | 10.0% |
| !!! | TGTTATTTGTTAATTTTTTA+GGG | + | chr5_1:57006331-57006350 | Msa0738940:three_prime_UTR | 10.0% |
| !! | AATAAAAAACACAAAAACAA+AGG | - | chr5_1:57002987-57003006 | None:intergenic | 15.0% |
| !!! | TGTTTTTGTGTTTTTTATTT+TGG | + | chr5_1:57002988-57003007 | Msa0738940:intron | 15.0% |
| !! | TTCATAAAAATGTAATGAAA+AGG | + | chr5_1:57003612-57003631 | Msa0738940:intron | 15.0% |
| !! | TCATAAAAATGTAATGAAAA+GGG | + | chr5_1:57003613-57003632 | Msa0738940:intron | 15.0% |
| !!! | AATTTTATTTACTATGTCAT+TGG | + | chr5_1:57004408-57004427 | Msa0738940:intron | 15.0% |
| !! | AAAAACATACACATAAATTA+TGG | - | chr5_1:57004759-57004778 | None:intergenic | 15.0% |
| !! | TTTGATTATGATGAATTATA+TGG | + | chr5_1:57004839-57004858 | Msa0738940:intron | 15.0% |
| !! | TTGATTATGATGAATTATAT+GGG | + | chr5_1:57004840-57004859 | Msa0738940:intron | 15.0% |
| !!! | CTGTTATTTGTTAATTTTTT+AGG | + | chr5_1:57006330-57006349 | Msa0738940:three_prime_UTR | 15.0% |
| !! | ACATAATCTATTTATGATTG+TGG | + | chr5_1:57003073-57003092 | Msa0738940:intron | 20.0% |
| !! | TAATTAAGTTTATTCTCTCA+AGG | - | chr5_1:57003105-57003124 | None:intergenic | 20.0% |
| !! | TAAAAAGATAGCTTATACAT+AGG | - | chr5_1:57003170-57003189 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGATAAGCA+GGG | + | chr5_1:57003184-57003203 | Msa0738940:intron | 20.0% |
| !!! | ATCATTAAATAAGTTGACAT+TGG | - | chr5_1:57003484-57003503 | None:intergenic | 20.0% |
| !! | GATATTTCAATAAAATTGGA+TGG | + | chr5_1:57003756-57003775 | Msa0738940:CDS | 20.0% |
| !! | AAAACTTACATCATAATACA+AGG | - | chr5_1:57004265-57004284 | None:intergenic | 20.0% |
| !! | ATATATTCAGAGAATAAGAA+TGG | - | chr5_1:57004789-57004808 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | + | chr5_1:57004794-57004813 | Msa0738940:intron | 20.0% |
| !! | TCATAATCAAAATAACATTG+AGG | - | chr5_1:57004830-57004849 | None:intergenic | 20.0% |
| !!! | AACATCTAATCTTTTAAACT+CGG | - | chr5_1:57005095-57005114 | None:intergenic | 20.0% |
| !! | AGTTTAAAAGATTAGATGTT+TGG | + | chr5_1:57005095-57005114 | Msa0738940:intron | 20.0% |
| !! | ACATAAATCATTATAAGTTC+AGG | + | chr5_1:57005530-57005549 | Msa0738940:intron | 20.0% |
| !! | TCATATTGATATTTAAACAC+AGG | - | chr5_1:57005577-57005596 | None:intergenic | 20.0% |
| !!! | CTTGATTTCTTTCTTTTTTT+TGG | - | chr5_1:57006285-57006304 | None:intergenic | 20.0% |
| !!! | TATTTTATACATCTAGATCT+AGG | - | chr5_1:57006377-57006396 | None:intergenic | 20.0% |
| ! | CAATTACCCAATATTGAAAA+GGG | + | chr5_1:57002725-57002744 | Msa0738940:CDS | 25.0% |
| ! | CTTATGAGTATAGTAGTATT+TGG | + | chr5_1:57002900-57002919 | Msa0738940:CDS | 25.0% |
| ! | TTGTATGTATATGTGTAGAA+TGG | + | chr5_1:57003013-57003032 | Msa0738940:intron | 25.0% |
| ! | TCTATTTATGATTGTGGTTT+AGG | + | chr5_1:57003079-57003098 | Msa0738940:intron | 25.0% |
| !! | CTTTTTAACAAAAGATAAGC+AGG | + | chr5_1:57003183-57003202 | Msa0738940:intron | 25.0% |
| !! | TTTTTGTATAAGCTATAAGC+TGG | + | chr5_1:57003215-57003234 | Msa0738940:intron | 25.0% |
| !!! | GATAAATTGAAAAGTGCTTA+TGG | + | chr5_1:57003268-57003287 | Msa0738940:intron | 25.0% |
| ! | TGTGACACATTTATTGATAT+TGG | + | chr5_1:57003312-57003331 | Msa0738940:intron | 25.0% |
| ! | AAGACGATTTAAAGATGATT+TGG | + | chr5_1:57003359-57003378 | Msa0738940:intron | 25.0% |
| !! | TAAATAAGTTGACATTGGTA+GGG | - | chr5_1:57003479-57003498 | None:intergenic | 25.0% |
| !! | TTAAATAAGTTGACATTGGT+AGG | - | chr5_1:57003480-57003499 | None:intergenic | 25.0% |
| !! | TTTTATTGCTGCACTAAATA+TGG | + | chr5_1:57003507-57003526 | Msa0738940:intron | 25.0% |
| ! | TGGATAATGTAACTTATAGA+TGG | + | chr5_1:57003527-57003546 | Msa0738940:intron | 25.0% |
| !!! | AATTTGATAAGTGCTGATTT+TGG | + | chr5_1:57003636-57003655 | Msa0738940:intron | 25.0% |
| ! | ATGGAAGTTGAACTTAAATT+GGG | + | chr5_1:57003672-57003691 | Msa0738940:CDS | 25.0% |
| ! | ATATTTGGATCTCAAACTTA+AGG | + | chr5_1:57003713-57003732 | Msa0738940:CDS | 25.0% |
| ! | ATTTCAATAAAATTGGATGG+TGG | + | chr5_1:57003759-57003778 | Msa0738940:CDS | 25.0% |
| !!! | AGTTTTGATTCATATCTAAC+AGG | + | chr5_1:57003899-57003918 | Msa0738940:intron | 25.0% |
| ! | GATGAATTTGTGCATAAAAT+TGG | - | chr5_1:57004192-57004211 | None:intergenic | 25.0% |
| !!! | ATGATGTAAGTTTTGATGTT+TGG | + | chr5_1:57004271-57004290 | Msa0738940:intron | 25.0% |
| ! | TATTTACTATGTCATTGGAT+TGG | + | chr5_1:57004413-57004432 | Msa0738940:intron | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | - | chr5_1:57004572-57004591 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | - | chr5_1:57004573-57004592 | None:intergenic | 25.0% |
| ! | TTATGATGAATTATATGGGT+TGG | + | chr5_1:57004844-57004863 | Msa0738940:intron | 25.0% |
| ! | AGAAATGACAACTTATTGTA+AGG | - | chr5_1:57005267-57005286 | None:intergenic | 25.0% |
| ! | AAATTTCTTTATGCTTTCAG+TGG | + | chr5_1:57005626-57005645 | Msa0738940:intron | 25.0% |
| ! | AATAAGTTAAAAACAGCTTC+TGG | - | chr5_1:57005767-57005786 | None:intergenic | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | - | chr5_1:57005941-57005960 | None:intergenic | 25.0% |
| !!! | TGTTAATTTTTTAGGGAATG+AGG | + | chr5_1:57006338-57006357 | Msa0738940:three_prime_UTR | 25.0% |
| !!! | GTTAATTTTTTAGGGAATGA+GGG | + | chr5_1:57006339-57006358 | Msa0738940:three_prime_UTR | 25.0% |
| !!! | TTAATTTTTTAGGGAATGAG+GGG | + | chr5_1:57006340-57006359 | Msa0738940:three_prime_UTR | 25.0% |
| ! | GATCTAGATGTATAAAATAC+TGG | + | chr5_1:57006378-57006397 | Msa0738940:three_prime_UTR | 25.0% |
| !!! | AAGGTTGCATTTTGATTTGT+GGG | - | chr5_1:57002538-57002557 | None:intergenic | 30.0% |
| !!! | AAAGGTTGCATTTTGATTTG+TGG | - | chr5_1:57002539-57002558 | None:intergenic | 30.0% |
| !! | GATATGAAAGCTTGGTTTTT+GGG | - | chr5_1:57002626-57002645 | None:intergenic | 30.0% |
| TTAATAGGGATATGAAAGCT+TGG | - | chr5_1:57002634-57002653 | None:intergenic | 30.0% | |
| ! | CCTTTTCAATATTGGGTAAT+TGG | - | chr5_1:57002727-57002746 | None:intergenic | 30.0% |
| CCAATTACCCAATATTGAAA+AGG | + | chr5_1:57002724-57002743 | Msa0738940:CDS | 30.0% | |
| ! | CTTGTACCCTTTTCAATATT+GGG | - | chr5_1:57002734-57002753 | None:intergenic | 30.0% |
| ! | TCTTGTACCCTTTTCAATAT+TGG | - | chr5_1:57002735-57002754 | None:intergenic | 30.0% |
| ! | GGTTAGTTGTAATTTGAGTT+TGG | + | chr5_1:57002871-57002890 | Msa0738940:CDS | 30.0% |
| ! | GTTGTAATTTGAGTTTGGAT+TGG | + | chr5_1:57002876-57002895 | Msa0738940:CDS | 30.0% |
| GAGTATAGTAGTATTTGGTT+TGG | + | chr5_1:57002905-57002924 | Msa0738940:CDS | 30.0% | |
| !! | CTTCATCACTGATTTAAGAT+CGG | - | chr5_1:57003342-57003361 | None:intergenic | 30.0% |
| ATACACACATCAGTTAATCT+CGG | - | chr5_1:57003423-57003442 | None:intergenic | 30.0% | |
| !!! | CTGCATGTTTTTTTAGATAC+CGG | + | chr5_1:57003443-57003462 | Msa0738940:intron | 30.0% |
| !!! | TGCATGTTTTTTTAGATACC+GGG | + | chr5_1:57003444-57003463 | Msa0738940:intron | 30.0% |
| CATGGAAGTTGAACTTAAAT+TGG | + | chr5_1:57003671-57003690 | Msa0738940:CDS | 30.0% | |
| AGTTGAACTTAAATTGGGAT+TGG | + | chr5_1:57003677-57003696 | Msa0738940:CDS | 30.0% | |
| AAATGAGCTAGAATCTGATA+TGG | - | chr5_1:57003821-57003840 | None:intergenic | 30.0% | |
| !!! | TTTCATGTGTCACTTTTATG+TGG | + | chr5_1:57003845-57003864 | Msa0738940:intron | 30.0% |
| ! | TGTGGCAGAAAACAATTTTA+CGG | + | chr5_1:57003863-57003882 | Msa0738940:intron | 30.0% |
| ATATTTGAAAAGTCTTCCGA+AGG | + | chr5_1:57004011-57004030 | Msa0738940:CDS | 30.0% | |
| GAAATTTATGCATTGGATTG+TGG | + | chr5_1:57004473-57004492 | Msa0738940:CDS | 30.0% | |
| TTATTATTCCTCAGTTGTAC+AGG | + | chr5_1:57004541-57004560 | Msa0738940:CDS | 30.0% | |
| TACAAGTTGTTGTCAATTAC+CGG | + | chr5_1:57004979-57004998 | Msa0738940:intron | 30.0% | |
| TATGCTATGCTACAATACTA+TGG | - | chr5_1:57005016-57005035 | None:intergenic | 30.0% | |
| ! | TCAGGTTTGGTCAAAATAAA+TGG | + | chr5_1:57005338-57005357 | Msa0738940:CDS | 30.0% |
| ATAAATGGAAATAACCTCGT+AGG | + | chr5_1:57005353-57005372 | Msa0738940:CDS | 30.0% | |
| !! | ACTTTGGAATGTCATTGAAA+TGG | + | chr5_1:57005393-57005412 | Msa0738940:CDS | 30.0% |
| AACATAAACCTACCTGAATA+AGG | - | chr5_1:57005445-57005464 | None:intergenic | 30.0% | |
| ! | TGTGAGATTGAGAGATTTTA+TGG | + | chr5_1:57005723-57005742 | Msa0738940:intron | 30.0% |
| TTAAGATGTCTCATTGATGA+AGG | + | chr5_1:57005972-57005991 | Msa0738940:intron | 30.0% | |
| TAAGATGTCTCATTGATGAA+GGG | + | chr5_1:57005973-57005992 | Msa0738940:intron | 30.0% | |
| TCAATAATTGTCCACATAAC+TGG | - | chr5_1:57006023-57006042 | None:intergenic | 30.0% | |
| AAGGTGAAACCATGAATAAT+GGG | - | chr5_1:57006098-57006117 | None:intergenic | 30.0% | |
| TAAGGTGAAACCATGAATAA+TGG | - | chr5_1:57006099-57006118 | None:intergenic | 30.0% | |
| AAATAACAGAAGATAGCACA+AGG | - | chr5_1:57006319-57006338 | None:intergenic | 30.0% | |
| TCCAATTACATGAGAATTCA+TGG | - | chr5_1:57006425-57006444 | None:intergenic | 30.0% | |
| !! | GGATATGAAAGCTTGGTTTT+TGG | - | chr5_1:57002627-57002646 | None:intergenic | 35.0% |
| TCCCTATTAATCACCCAAAA+CGG | + | chr5_1:57002644-57002663 | Msa0738940:CDS | 35.0% | |
| !! | ACCGTTTTGGGTGATTAATA+GGG | - | chr5_1:57002648-57002667 | None:intergenic | 35.0% |
| ! | CACGAAATTAAGACCGTTTT+GGG | - | chr5_1:57002660-57002679 | None:intergenic | 35.0% |
| ! | TCACGAAATTAAGACCGTTT+TGG | - | chr5_1:57002661-57002680 | None:intergenic | 35.0% |
| GGTACAAGAATTCCAATGTT+GGG | + | chr5_1:57002746-57002765 | Msa0738940:CDS | 35.0% | |
| AAGTAAACACTACCCAACAT+TGG | - | chr5_1:57002761-57002780 | None:intergenic | 35.0% | |
| GATTCTTCTATTGTTAAGCC+TGG | + | chr5_1:57002818-57002837 | Msa0738940:CDS | 35.0% | |
| ! | GAATTGAGATTGTTGCTTCT+GGG | + | chr5_1:57002849-57002868 | Msa0738940:CDS | 35.0% |
| ! | AATTGAGATTGTTGCTTCTG+GGG | + | chr5_1:57002850-57002869 | Msa0738940:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | + | chr5_1:57002916-57002935 | Msa0738940:CDS | 35.0% |
| !! | ATCACTGATTTAAGATCGGA+CGG | - | chr5_1:57003338-57003357 | None:intergenic | 35.0% |
| !!! | TTTTTTAGATACCGGGAATC+TGG | + | chr5_1:57003451-57003470 | Msa0738940:intron | 35.0% |
| !!! | GATAAGTGCTGATTTTGGAA+AGG | + | chr5_1:57003641-57003660 | Msa0738940:intron | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | + | chr5_1:57003919-57003938 | Msa0738940:intron | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | + | chr5_1:57003920-57003939 | Msa0738940:intron | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | + | chr5_1:57003928-57003947 | Msa0738940:CDS | 35.0% |
| AATGCTATCACCAAGAATCT+TGG | + | chr5_1:57003964-57003983 | Msa0738940:CDS | 35.0% | |
| !!! | TTGGAAGTTTTGAGTTCTTG+TGG | - | chr5_1:57004173-57004192 | None:intergenic | 35.0% |
| GAGAAATTGTTTCGATGTTC+AGG | + | chr5_1:57004449-57004468 | Msa0738940:intron | 35.0% | |
| TTCAGGCGAAATTTATGCAT+TGG | + | chr5_1:57004466-57004485 | Msa0738940:intron | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | - | chr5_1:57004507-57004526 | None:intergenic | 35.0% | |
| TATATCTTTGTCTTCTCCTC+CGG | + | chr5_1:57004593-57004612 | Msa0738940:CDS | 35.0% | |
| TCAGAGAATAAGAATGGTGA+AGG | - | chr5_1:57004783-57004802 | None:intergenic | 35.0% | |
| !! | ATGAATTATATGGGTTGGTG+TGG | + | chr5_1:57004849-57004868 | Msa0738940:intron | 35.0% |
| TGTACTTGACAACAATGTCT+TGG | - | chr5_1:57004894-57004913 | None:intergenic | 35.0% | |
| TGTTGTCAAGTACAGACTAT+AGG | + | chr5_1:57004900-57004919 | Msa0738940:intron | 35.0% | |
| GTTGTCAAGTACAGACTATA+GGG | + | chr5_1:57004901-57004920 | Msa0738940:intron | 35.0% | |
| ATTGTAAGGTGTACAAAGAC+AGG | - | chr5_1:57005253-57005272 | None:intergenic | 35.0% | |
| AATCATCTGTGGAAACAAGA+TGG | - | chr5_1:57005312-57005331 | None:intergenic | 35.0% | |
| TCATTGAAATGGAGCAACAT+TGG | + | chr5_1:57005404-57005423 | Msa0738940:CDS | 35.0% | |
| TCTACGAATGTTCCTTATTC+AGG | + | chr5_1:57005430-57005449 | Msa0738940:CDS | 35.0% | |
| TTGTAAATTCTAGCGCACAT+AGG | + | chr5_1:57005653-57005672 | Msa0738940:intron | 35.0% | |
| TGTAAATTCTAGCGCACATA+GGG | + | chr5_1:57005654-57005673 | Msa0738940:intron | 35.0% | |
| CACATAGGGTATGTTTGAAT+TGG | + | chr5_1:57005668-57005687 | Msa0738940:intron | 35.0% | |
| ! | CTTATTTCCATTAGCTCTCT+AGG | + | chr5_1:57005781-57005800 | Msa0738940:intron | 35.0% |
| CTTAGATGTGCATTTGCATA+TGG | - | chr5_1:57006059-57006078 | None:intergenic | 35.0% | |
| GCAAATGCACATCTAAGTAA+AGG | + | chr5_1:57006062-57006081 | Msa0738940:CDS | 35.0% | |
| !! | AAACCATGAATAATGGGCAA+GGG | - | chr5_1:57006092-57006111 | None:intergenic | 35.0% |
| GCCATGAATTCTCATGTAAT+TGG | + | chr5_1:57006421-57006440 | Msa0738940:three_prime_UTR | 35.0% | |
| ! | GAGGTTGTTGGTTGTTCATT+TGG | - | chr5_1:57002504-57002523 | None:intergenic | 40.0% |
| GTTGTGGAAATTGAGGTTGT+TGG | - | chr5_1:57002516-57002535 | None:intergenic | 40.0% | |
| ! | TTTGTGGGTTGTGGAAATTG+AGG | - | chr5_1:57002523-57002542 | None:intergenic | 40.0% |
| !!! | GCATTTTGATTTGTGGGTTG+TGG | - | chr5_1:57002532-57002551 | None:intergenic | 40.0% |
| AGTAGGAGAAGGAAGAAGAA+AGG | - | chr5_1:57002557-57002576 | None:intergenic | 40.0% | |
| AAGAGGTGAATAGTAGGAGA+AGG | - | chr5_1:57002568-57002587 | None:intergenic | 40.0% | |
| TGAAGGAAGAGGTGAATAGT+AGG | - | chr5_1:57002574-57002593 | None:intergenic | 40.0% | |
| !!! | AAAGCTTGGTTTTTGGGTTG+AGG | - | chr5_1:57002620-57002639 | None:intergenic | 40.0% |
| !! | GACCGTTTTGGGTGATTAAT+AGG | - | chr5_1:57002649-57002668 | None:intergenic | 40.0% |
| GGGTAATTGGAGTGAAACTA+TGG | - | chr5_1:57002714-57002733 | None:intergenic | 40.0% | |
| GGGTACAAGAATTCCAATGT+TGG | + | chr5_1:57002745-57002764 | Msa0738940:CDS | 40.0% | |
| ! | GGAATTGAGATTGTTGCTTC+TGG | + | chr5_1:57002848-57002867 | Msa0738940:CDS | 40.0% |
| CCTTGATCAGAAACCTTAAC+AGG | - | chr5_1:57002932-57002951 | None:intergenic | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | + | chr5_1:57002929-57002948 | Msa0738940:CDS | 40.0% | |
| AAGCTATCATACAGAACTCG+TGG | + | chr5_1:57003244-57003263 | Msa0738940:intron | 40.0% | |
| AGCCGAGCAATATCAATCAA+TGG | + | chr5_1:57003397-57003416 | Msa0738940:intron | 40.0% | |
| ! | GGCCATTGATTGATATTGCT+CGG | - | chr5_1:57003402-57003421 | None:intergenic | 40.0% |
| !! | GCTGATTTTGGAAAGGTTGA+AGG | + | chr5_1:57003648-57003667 | Msa0738940:intron | 40.0% |
| !! | TTTTGGAAAGGTTGAAGGCA+TGG | + | chr5_1:57003653-57003672 | Msa0738940:intron | 40.0% |
| TAAATTGGGATTGGAGAACC+AGG | + | chr5_1:57003686-57003705 | Msa0738940:CDS | 40.0% | |
| TGAGATCCAAATATCCTTCC+TGG | - | chr5_1:57003707-57003726 | None:intergenic | 40.0% | |
| GATCTCAAACTTAAGGACTG+TGG | + | chr5_1:57003720-57003739 | Msa0738940:CDS | 40.0% | |
| !! | GTGCATCTTGGCTTTATCAA+GGG | + | chr5_1:57003781-57003800 | Msa0738940:CDS | 40.0% |
| !! | TCTTGGCTTTATCAAGGGTA+TGG | + | chr5_1:57003786-57003805 | Msa0738940:intron | 40.0% |
| ATCACCAAGAATCTTGGAGA+AGG | + | chr5_1:57003970-57003989 | Msa0738940:CDS | 40.0% | |
| AATGCCTTCTCCAAGATTCT+TGG | - | chr5_1:57003977-57003996 | None:intergenic | 40.0% | |
| !! | ATCTTGGAGAAGGCATTACA+AGG | + | chr5_1:57003980-57003999 | Msa0738940:CDS | 40.0% |
| TTTGAAAAGTCTTCCGAAGG+AGG | + | chr5_1:57004014-57004033 | Msa0738940:CDS | 40.0% | |
| TTACTAAGTGAGTCGTCGAT+TGG | + | chr5_1:57004087-57004106 | Msa0738940:CDS | 40.0% | |
| ! | TACTAAGTGAGTCGTCGATT+GGG | + | chr5_1:57004088-57004107 | Msa0738940:CDS | 40.0% |
| ! | TCGATTGGGTTTGAAACGAA+TGG | + | chr5_1:57004102-57004121 | Msa0738940:CDS | 40.0% |
| ! | CGATTGGGTTTGAAACGAAT+GGG | + | chr5_1:57004103-57004122 | Msa0738940:CDS | 40.0% |
| CATCAAACAGACAAGAACTC+TGG | - | chr5_1:57004339-57004358 | None:intergenic | 40.0% | |
| GTTCTTGTCTGTTTGATGTC+TGG | + | chr5_1:57004341-57004360 | Msa0738940:intron | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | + | chr5_1:57004510-57004529 | Msa0738940:CDS | 40.0% | |
| ! | TGATCTGAAATCTCCACAAC+CGG | - | chr5_1:57004615-57004634 | None:intergenic | 40.0% |
| GAGATTTCAGATCAGAAAGC+AGG | + | chr5_1:57004621-57004640 | Msa0738940:CDS | 40.0% | |
| ! | CCACTATTTTCTGCAATCTG+CGG | + | chr5_1:57005046-57005065 | Msa0738940:intron | 40.0% |
| ! | GATGATTCAAGCTTCAGGTT+TGG | + | chr5_1:57005325-57005344 | Msa0738940:intron | 40.0% |
| CGAATGTTCCTTATTCAGGT+AGG | + | chr5_1:57005434-57005453 | Msa0738940:intron | 40.0% | |
| AAGCTATCCTAGAGAGCTAA+TGG | - | chr5_1:57005791-57005810 | None:intergenic | 40.0% | |
| TTACCCTTGCCCATTATTCA+TGG | + | chr5_1:57006086-57006105 | Msa0738940:CDS | 40.0% | |
| !! | GAAACCATGAATAATGGGCA+AGG | - | chr5_1:57006093-57006112 | None:intergenic | 40.0% |
| GATTATCTCTGCGTCTTGTA+AGG | - | chr5_1:57006117-57006136 | None:intergenic | 40.0% | |
| ACATCTAGATCTAGGCATGA+TGG | - | chr5_1:57006369-57006388 | None:intergenic | 40.0% | |
| TTGTGATTGCGTGGGAATGA+AGG | - | chr5_1:57002591-57002610 | None:intergenic | 45.0% | |
| GGTTGAGATTGTGATTGCGT+GGG | - | chr5_1:57002599-57002618 | None:intergenic | 45.0% | |
| AGGTTGAGATTGTGATTGCG+TGG | - | chr5_1:57002600-57002619 | None:intergenic | 45.0% | |
| ATTGTTAAGCCTGGTGAGAG+TGG | + | chr5_1:57002827-57002846 | Msa0738940:CDS | 45.0% | |
| ATCTCAATTCCACTCTCACC+AGG | - | chr5_1:57002839-57002858 | None:intergenic | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | + | chr5_1:57002946-57002965 | Msa0738940:CDS | 45.0% | |
| GGAGAACCAGGAAGGATATT+TGG | + | chr5_1:57003698-57003717 | Msa0738940:CDS | 45.0% | |
| ! | AATTGGATGGTGGTGCATCT+TGG | + | chr5_1:57003769-57003788 | Msa0738940:CDS | 45.0% |
| !! | GGTGCATCTTGGCTTTATCA+AGG | + | chr5_1:57003780-57003799 | Msa0738940:CDS | 45.0% |
| AACGAAGAGTGATCATCGAC+CGG | - | chr5_1:57004042-57004061 | None:intergenic | 45.0% | |
| GCAGAGGTTAGGAATAGGTA+GGG | - | chr5_1:57004151-57004170 | None:intergenic | 45.0% | |
| TTGTGGCAGAGGTTAGGAAT+AGG | - | chr5_1:57004156-57004175 | None:intergenic | 45.0% | |
| !!! | GTTTTGAGTTCTTGTGGCAG+AGG | - | chr5_1:57004167-57004186 | None:intergenic | 45.0% |
| AACAGCCTCGTCTAAAGAGA+TGG | - | chr5_1:57004226-57004245 | None:intergenic | 45.0% | |
| CAGACAAGAACTCTGGATCA+TGG | - | chr5_1:57004332-57004351 | None:intergenic | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | + | chr5_1:57004514-57004533 | Msa0738940:CDS | 45.0% | |
| GGGTATTTCCTGTACAACTG+AGG | - | chr5_1:57004552-57004571 | None:intergenic | 45.0% | |
| ACCAGTAGCATGCATCTCAT+TGG | + | chr5_1:57004698-57004717 | Msa0738940:CDS | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | - | chr5_1:57004702-57004721 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | + | chr5_1:57004702-57004721 | Msa0738940:intron | 45.0% | |
| TACTATGGCGCTACAATAGC+CGG | - | chr5_1:57005001-57005020 | None:intergenic | 45.0% | |
| CCGCAGATTGCAGAAAATAG+TGG | - | chr5_1:57005049-57005068 | None:intergenic | 45.0% | |
| CCTGAAGCTTGAATCATCTG+TGG | - | chr5_1:57005323-57005342 | None:intergenic | 45.0% | |
| CCACAGATGATTCAAGCTTC+AGG | + | chr5_1:57005320-57005339 | Msa0738940:intron | 45.0% | |
| CTCGTAGGTACCATCAGATT+GGG | + | chr5_1:57005368-57005387 | Msa0738940:CDS | 45.0% | |
| ACCATCAGATTGGGTGACTT+TGG | + | chr5_1:57005377-57005396 | Msa0738940:CDS | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | - | chr5_1:57005381-57005400 | None:intergenic | 45.0% | |
| ! | TTTTCCTGCAGCCAGTTATG+TGG | + | chr5_1:57006009-57006028 | Msa0738940:intron | 45.0% |
| TTGCGTGGGAATGAAGGAAG+AGG | - | chr5_1:57002585-57002604 | None:intergenic | 50.0% | |
| TTGGTAGGGATCCAGATTCC+CGG | - | chr5_1:57003465-57003484 | None:intergenic | 50.0% | |
| TTGGGATTGGAGAACCAGGA+AGG | + | chr5_1:57003690-57003709 | Msa0738940:CDS | 50.0% | |
| AAGTCTTCCGAAGGAGGTTC+CGG | + | chr5_1:57004020-57004039 | Msa0738940:CDS | 50.0% | |
| GGCAGAGGTTAGGAATAGGT+AGG | - | chr5_1:57004152-57004171 | None:intergenic | 50.0% | |
| GAGTTCTTGTGGCAGAGGTT+AGG | - | chr5_1:57004162-57004181 | None:intergenic | 50.0% | |
| GCTAGCCATCTCTTTAGACG+AGG | + | chr5_1:57004218-57004237 | Msa0738940:CDS | 50.0% | |
| TTTGTCTTCTCCTCCGGTTG+TGG | + | chr5_1:57004599-57004618 | Msa0738940:CDS | 50.0% | |
| ! | TCTGAAATCTCCACAACCGG+AGG | - | chr5_1:57004612-57004631 | None:intergenic | 50.0% |
| ACTATAGGGCTACAACGCAG+CGG | + | chr5_1:57004915-57004934 | Msa0738940:intron | 50.0% | |
| CCAATCTGATGGTACCTACG+AGG | - | chr5_1:57005370-57005389 | None:intergenic | 50.0% | |
| CCTCGTAGGTACCATCAGAT+TGG | + | chr5_1:57005367-57005386 | Msa0738940:CDS | 50.0% | |
| TTGTCCACATAACTGGCTGC+AGG | - | chr5_1:57006016-57006035 | None:intergenic | 50.0% | |
| TCATCGACCGGAACCTCCTT+CGG | - | chr5_1:57004030-57004049 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57002495 | 57006477 | 57002495 | ID=Msa0738940;Name=Msa0738940 |
| chr5_1 | mRNA | 57002495 | 57006477 | 57002495 | ID=Msa0738940-mRNA-1;Parent=Msa0738940;Name=Msa0738940-mRNA-1;_AED=0.15;_eAED=0.15;_QI=53|1|1|1|1|1|6|263|494 |
| chr5_1 | exon | 57002495 | 57002967 | 57002495 | ID=Msa0738940-mRNA-1:exon:16151;Parent=Msa0738940-mRNA-1 |
| chr5_1 | exon | 57003663 | 57003802 | 57003663 | ID=Msa0738940-mRNA-1:exon:16152;Parent=Msa0738940-mRNA-1 |
| chr5_1 | exon | 57003921 | 57004275 | 57003921 | ID=Msa0738940-mRNA-1:exon:16153;Parent=Msa0738940-mRNA-1 |
| chr5_1 | exon | 57004471 | 57004719 | 57004471 | ID=Msa0738940-mRNA-1:exon:16154;Parent=Msa0738940-mRNA-1 |
| chr5_1 | exon | 57005326 | 57005451 | 57005326 | ID=Msa0738940-mRNA-1:exon:16155;Parent=Msa0738940-mRNA-1 |
| chr5_1 | exon | 57006020 | 57006477 | 57006020 | ID=Msa0738940-mRNA-1:exon:16156;Parent=Msa0738940-mRNA-1 |
| chr5_1 | five_prime_UTR | 57002495 | 57002547 | 57002495 | ID=Msa0738940-mRNA-1:five_prime_utr;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57002548 | 57002967 | 57002548 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57003663 | 57003802 | 57003663 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57003921 | 57004275 | 57003921 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57004471 | 57004719 | 57004471 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57005326 | 57005451 | 57005326 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | CDS | 57006020 | 57006214 | 57006020 | ID=Msa0738940-mRNA-1:cds;Parent=Msa0738940-mRNA-1 |
| chr5_1 | three_prime_UTR | 57006215 | 57006477 | 57006215 | ID=Msa0738940-mRNA-1:three_prime_utr;Parent=Msa0738940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
