AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547400 MtrunA17_Chr4g0029521 96.586 498 14 2 1 498 1 495 0.0 998
Msa0547400 MtrunA17_Chr2g0326381 56.825 359 110 13 38 371 31 369 4.31e-126 374
Msa0547400 MtrunA17_Chr1g0181381 52.442 389 142 10 1 355 3 382 6.37e-123 369
Msa0547400 MtrunA17_Chr7g0263941 76.847 203 41 5 24 223 18 217 7.76e-112 337
Msa0547400 MtrunA17_Chr8g0373541 69.545 220 60 3 9 226 7 221 1.37e-110 337
Msa0547400 MtrunA17_Chr2g0330171 42.536 489 182 16 36 496 43 460 3.35e-110 335
Msa0547400 MtrunA17_Chr4g0040571 82.659 173 29 1 34 206 34 205 1.52e-108 332
Msa0547400 MtrunA17_Chr8g0342421 77.000 200 43 2 8 205 29 227 2.06e-108 332
Msa0547400 MtrunA17_Chr1g0185121 54.459 314 118 6 35 345 36 327 6.25e-108 328
Msa0547400 MtrunA17_Chr1g0199101 40.143 558 218 18 18 497 13 532 6.34e-108 331
Msa0547400 MtrunA17_Chr1g0191991 77.717 184 38 2 37 220 61 241 5.88e-104 321
Msa0547400 MtrunA17_Chr1g0151351 80.952 168 32 0 39 206 41 208 1.48e-103 317
Msa0547400 MtrunA17_Chr1g0163001 74.194 186 45 2 36 219 40 224 4.21e-102 316
Msa0547400 MtrunA17_Chr1g0162971 80.488 164 31 1 39 202 41 203 1.83e-101 311
Msa0547400 MtrunA17_Chr1g0210821 75.141 177 41 2 42 218 47 220 2.00e-99 310
Msa0547400 MtrunA17_Chr3g0141431 76.543 162 38 0 35 196 18 179 9.70e-97 298
Msa0547400 MtrunA17_Chr7g0268961 81.935 155 27 1 49 203 32 185 1.88e-95 297
Msa0547400 MtrunA17_Chr2g0324991 86.364 132 17 1 50 181 3 133 5.71e-83 253
Msa0547400 MtrunA17_Chr6g0479921 61.783 157 58 2 39 194 29 184 5.67e-69 228
Msa0547400 MtrunA17_Chr8g0375521 60.256 156 61 1 39 193 27 182 6.55e-69 226
Msa0547400 MtrunA17_Chr2g0320341 34.839 155 88 4 48 189 224 378 1.28e-24 105
Msa0547400 MtrunA17_Chr1g0200421 34.868 152 86 4 53 192 236 386 2.23e-24 106
Msa0547400 MtrunA17_Chr3g0123941 35.897 156 93 4 44 192 113 268 5.63e-24 102
Msa0547400 MtrunA17_Chr5g0422571 34.682 173 102 6 32 195 79 249 1.17e-21 95.1
Msa0547400 MtrunA17_Chr8g0382121 33.987 153 91 4 47 189 104 256 6.30e-21 93.6
Msa0547400 MtrunA17_Chr7g0258011 33.540 161 90 5 62 206 183 342 4.45e-20 91.7
Msa0547400 MtrunA17_Chr4g0053341 34.211 152 89 5 50 192 69 218 8.12e-20 88.6
Msa0547400 MtrunA17_Chr1g0198651 34.507 142 81 4 62 192 109 249 8.52e-20 89.7
Msa0547400 MtrunA17_Chr4g0026521 36.691 139 79 4 62 192 125 262 1.05e-19 89.7
Msa0547400 MtrunA17_Chr8g0352011 36.691 139 79 4 62 192 173 310 1.29e-19 90.1
Msa0547400 MtrunA17_Chr2g0321291 38.129 139 77 4 62 192 140 277 2.20e-19 89.0
Msa0547400 MtrunA17_Chr1g0173841 35.971 139 80 4 62 192 222 359 5.60e-19 89.0
Msa0547400 MtrunA17_Chr2g0328921 35.971 139 80 4 62 192 145 282 9.35e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547400 AT3G45260.2 79.775 178 36 0 38 215 38 215 3.43e-110 334
Msa0547400 AT3G45260.1 79.775 178 36 0 38 215 38 215 3.43e-110 334
Msa0547400 AT3G50700.1 76.562 192 40 3 14 202 7 196 4.44e-109 332
Msa0547400 AT5G60470.3 69.856 209 55 2 11 211 4 212 8.17e-109 331
Msa0547400 AT5G60470.2 69.856 209 55 2 11 211 8 216 1.16e-108 331
Msa0547400 AT5G03150.1 54.142 338 125 8 38 348 52 386 3.20e-107 328
Msa0547400 AT5G66730.1 77.895 190 39 3 14 202 7 194 1.14e-106 327
Msa0547400 AT1G03840.1 82.353 170 29 1 34 203 36 204 1.87e-106 327
Msa0547400 AT5G44160.1 75.258 194 47 1 13 206 11 203 6.99e-106 324
Msa0547400 AT1G55110.3 80.814 172 33 0 39 210 63 234 1.91e-105 322
Msa0547400 AT1G55110.1 80.814 172 33 0 39 210 63 234 1.91e-105 322
Msa0547400 AT1G55110.2 80.814 172 33 0 39 210 63 234 1.91e-105 322
Msa0547400 AT2G02080.1 41.139 474 199 11 31 464 46 479 2.82e-105 324
Msa0547400 AT2G02080.4 41.139 474 199 11 31 464 46 479 2.82e-105 324
Msa0547400 AT2G02080.5 41.139 474 199 11 31 464 46 479 2.82e-105 324
Msa0547400 AT2G02080.3 41.139 474 199 11 31 464 46 479 2.82e-105 324
Msa0547400 AT3G13810.6 79.310 174 36 0 33 206 45 218 9.85e-104 319
Msa0547400 AT3G13810.4 79.310 174 36 0 33 206 64 237 1.47e-103 320
Msa0547400 AT3G13810.1 79.310 174 36 0 33 206 64 237 1.47e-103 320
Msa0547400 AT3G13810.5 79.310 174 36 0 33 206 59 232 1.56e-103 319
Msa0547400 AT4G02670.1 81.212 165 31 0 39 203 53 217 2.42e-103 315
Msa0547400 AT4G02670.2 81.212 165 31 0 39 203 55 219 2.61e-103 315
Msa0547400 AT1G03840.2 81.176 170 29 2 34 203 36 202 8.03e-103 317
Msa0547400 AT1G14580.1 77.647 170 37 1 37 206 51 219 5.20e-102 314
Msa0547400 AT1G14580.2 77.647 170 37 1 37 206 51 219 5.20e-102 314
Msa0547400 AT1G14580.3 77.647 170 37 1 37 206 65 233 1.04e-101 314
Msa0547400 AT5G60470.1 77.160 162 37 0 50 211 46 207 9.38e-98 302
Msa0547400 AT2G02070.2 74.713 174 39 2 39 208 52 224 1.79e-97 306
Msa0547400 AT2G02070.1 74.713 174 39 2 39 208 52 224 1.79e-97 306
Msa0547400 AT5G44160.2 82.278 158 27 1 49 206 8 164 4.71e-97 300
Msa0547400 AT3G13810.3 82.166 157 28 0 50 206 68 224 1.52e-96 301
Msa0547400 AT3G13810.2 82.166 157 28 0 50 206 82 238 2.68e-96 301
Msa0547400 AT2G02080.6 39.819 442 186 11 63 464 1 402 7.45e-90 282
Msa0547400 AT2G02080.2 39.819 442 186 11 63 464 1 402 7.45e-90 282
Msa0547400 AT1G68130.1 61.350 163 62 1 32 193 34 196 2.94e-72 235
Msa0547400 AT2G01940.1 62.025 158 59 1 39 195 44 201 6.20e-71 233
Msa0547400 AT1G25250.3 62.420 157 57 2 39 193 33 189 7.67e-71 231
Msa0547400 AT2G01940.3 61.006 159 60 2 39 195 44 202 3.91e-67 223
Msa0547400 AT1G25250.1 62.585 147 53 2 49 193 20 166 1.92e-66 218
Msa0547400 AT1G68130.2 61.818 110 41 1 85 193 1 110 8.32e-45 160
Msa0547400 AT2G01940.2 61.607 112 42 1 85 195 1 112 1.44e-44 160
Msa0547400 AT1G25250.2 62.162 111 40 2 85 193 1 111 2.25e-44 159
Msa0547400 AT1G34370.3 33.714 175 103 4 48 209 14 188 2.29e-24 103
Msa0547400 AT1G34370.2 33.714 175 103 4 48 209 224 398 7.28e-24 105
Msa0547400 AT1G34370.1 33.714 175 103 4 48 209 224 398 7.28e-24 105
Msa0547400 AT5G22890.1 31.609 174 106 4 32 192 181 354 3.94e-23 101
Msa0547400 AT1G13290.1 30.455 220 127 7 12 206 30 248 1.74e-22 98.2
Msa0547400 AT1G51220.1 32.317 164 93 5 62 217 172 325 1.12e-19 90.5
Msa0547400 AT1G08290.1 38.519 135 73 4 67 192 179 312 5.86e-19 88.6
Msa0547400 AT3G20880.1 35.252 139 81 4 62 192 250 387 1.04e-18 88.6
Msa0547400 AT1G34790.1 36.691 139 79 4 62 192 139 276 1.93e-18 86.3
Msa0547400 AT3G57670.1 35.252 139 81 4 62 192 211 348 2.15e-18 87.4

Find 104 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAATAAGTTGGTGAATT+TGG 0.142711 4_1:-40375997 Msa0547400:CDS
CAAGAACTTGGTGAGTTTAA+TGG 0.196940 4_1:-40375726 Msa0547400:CDS
ACAAAATTCTGAATATTTAT+AGG 0.197521 4_1:+40375433 None:intergenic
TTTCAGTTTCACTCAGAATT+TGG 0.212422 4_1:-40376446 Msa0547400:CDS
TTCTGGGCTAATTAAGTAAA+TGG 0.223061 4_1:-40375458 Msa0547400:three_prime_UTR
GCTGGAACTGGATTTGGATT+AGG 0.245828 4_1:+40377655 None:intergenic
TTCTTAGCTGGAACTGGATT+TGG 0.246398 4_1:+40377649 None:intergenic
AGATTGAACTGCATATTTCT+TGG 0.249648 4_1:+40377124 None:intergenic
CTGGAACTGGATTTGGATTA+GGG 0.258674 4_1:+40377656 None:intergenic
CTGGATTTGGATTAGGGTTT+GGG 0.258906 4_1:+40377662 None:intergenic
TCAAATTCAAACAATATGTT+TGG 0.277577 4_1:-40375924 Msa0547400:CDS
GCCGATGAAGCTGCAAATTC+TGG 0.302791 4_1:+40377336 None:intergenic
TTTAATGGAATGGGATCATT+AGG 0.305018 4_1:-40375711 Msa0547400:CDS
TTGGATTAGGGTTTGGGTGT+TGG 0.305432 4_1:+40377668 None:intergenic
AGCTCTCATGGTGCTGGAAT+TGG 0.305838 4_1:+40377708 None:intergenic
CAAAATTCTGAATATTTATA+GGG 0.311284 4_1:+40375434 None:intergenic
TGTGAATGGTACAAAGGATT+TGG 0.314338 4_1:-40375898 Msa0547400:CDS
ATGAACTTGCCTGGTGTTCC+TGG 0.325816 4_1:+40377613 None:intergenic
CCATGAACCTTCTAGAGCTT+TGG 0.326353 4_1:-40377219 Msa0547400:CDS
ACTGGATTTGGATTAGGGTT+TGG 0.339241 4_1:+40377661 None:intergenic
TGTGAACTTAACAAGAGATT+AGG 0.353034 4_1:-40375553 Msa0547400:three_prime_UTR
CAAATTCAAACAATATGTTT+GGG 0.356792 4_1:-40375923 Msa0547400:CDS
AATAGACAAATGTATGATTC+AGG 0.359404 4_1:-40375840 Msa0547400:CDS
GTGAACTTAACAAGAGATTA+GGG 0.362228 4_1:-40375552 Msa0547400:three_prime_UTR
CAGCAGCATTAAGCAACTTT+CGG 0.370255 4_1:-40376523 Msa0547400:CDS
CATGAACCTTCTAGAGCTTT+GGG 0.370674 4_1:-40377218 Msa0547400:CDS
AACAATAGCAGCACCAATCT+TGG 0.379634 4_1:-40375969 Msa0547400:CDS
GATAGTGGTAATTGTGGTTG+TGG 0.381060 4_1:-40375500 Msa0547400:three_prime_UTR
AATCTCTTGTAAAACCCATT+TGG 0.383514 4_1:+40375796 None:intergenic
TCTAAATTGTAGTTTGATAG+TGG 0.384198 4_1:-40375515 Msa0547400:three_prime_UTR
GAGATTAGGGATTTCTATCA+TGG 0.390793 4_1:-40375539 Msa0547400:three_prime_UTR
CGAAAGTTGCTTAATGCTGC+TGG 0.400098 4_1:+40376524 None:intergenic
GTTGTTACTGACAAGTGATT+TGG 0.406986 4_1:+40376164 None:intergenic
CCAAAGCTCTAGAAGGTTCA+TGG 0.410521 4_1:+40377219 None:intergenic
AATAATCTCCAGAGCCAGTA+TGG 0.415643 4_1:-40375687 Msa0547400:CDS
CTTGGTGAGTTTAATGGAAT+GGG 0.417145 4_1:-40375720 Msa0547400:CDS
CCATGTAGCATTGGCAAAGA+TGG 0.419067 4_1:+40376287 None:intergenic
GAAGACTGTGTTATTATCAT+TGG 0.421766 4_1:+40376091 None:intergenic
GCTGCAAATTCTGGTCTCTC+TGG 0.424694 4_1:+40377345 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 4_1:-40377118 Msa0547400:CDS
GGAATGAGGTGAAACTGAAA+AGG 0.435372 4_1:+40377729 None:intergenic
CCACTTTCACATTGTTAATG+AGG 0.436319 4_1:-40376057 Msa0547400:CDS
AAATCTCCCAAAGCTCTAGA+AGG 0.438385 4_1:+40377212 None:intergenic
GCTCTTTGCTTCAGCTTCCA+TGG 0.444326 4_1:+40377299 None:intergenic
ATGCAAACAATGGATGTGTT+TGG 0.447388 4_1:-40376347 Msa0547400:CDS
TAAATACCCACCTCCAAGAT+TGG 0.449616 4_1:+40375956 None:intergenic
GTTGCAGAAAGAATCTCAAA+TGG 0.449863 4_1:-40376135 Msa0547400:CDS
CAAAGATCAAATTCGAAAGA+AGG 0.450162 4_1:-40377273 Msa0547400:CDS
TTATGTGAAATCTGCAACAA+GGG 0.451384 4_1:-40377371 Msa0547400:CDS
TATGTCACCAAAGTCATTGA+TGG 0.456254 4_1:-40377408 Msa0547400:CDS
TTTGCTTCAGCTTCCATGGT+AGG 0.459248 4_1:+40377303 None:intergenic
ACTTGGTGAGTTTAATGGAA+TGG 0.460921 4_1:-40375721 Msa0547400:CDS
AGTAGTGTCCACCACCATAC+TGG 0.466451 4_1:+40375673 None:intergenic
GAAAACATGGTGAGAAGAAG+TGG 0.467136 4_1:-40377163 Msa0547400:CDS
TTCATTACTCCATGTAGCAT+TGG 0.470776 4_1:+40376278 None:intergenic
CCTCATTAACAATGTGAAAG+TGG 0.472482 4_1:+40376057 None:intergenic
CCATCTTTGCCAATGCTACA+TGG 0.474776 4_1:-40376287 Msa0547400:CDS
TTTGTCGCCATCAATGACTT+TGG 0.484591 4_1:+40377401 None:intergenic
ATTTGATGAGGAAGCTCTCA+TGG 0.486833 4_1:+40377696 None:intergenic
ATGCTAAAGGAAAATATCAC+AGG 0.487164 4_1:+40375373 None:intergenic
ACCAGAATTTGCAGCTTCAT+CGG 0.488033 4_1:-40377337 Msa0547400:CDS
ATAGCAACCACTTCTGATTC+CGG 0.489329 4_1:+40377428 None:intergenic
TGAGGAAGCTCTCATGGTGC+TGG 0.495516 4_1:+40377702 None:intergenic
TGGTGCACACAAGTCTTCTC+AGG 0.500242 4_1:+40377239 None:intergenic
AGAGCTTTGGGAGATTTGAC+AGG 0.501432 4_1:-40377206 Msa0547400:CDS
AGCAGCACCAATCTTGGAGG+TGG 0.501855 4_1:-40375963 Msa0547400:CDS
AAAGCTCATAGCAAGATTTG+TGG 0.506969 4_1:-40377095 Msa0547400:CDS
TGCAGATTTCACATAAGAAA+CGG 0.507472 4_1:+40377378 None:intergenic
GTCCACCACCATACTGGCTC+TGG 0.507855 4_1:+40375679 None:intergenic
GAATAAGTTGGTGAATTTGG+AGG 0.513790 4_1:-40375994 Msa0547400:CDS
AACATCATCAGAACCACCAT+TGG 0.518482 4_1:-40376414 Msa0547400:CDS
AATATGTTTGGGATTGTGAA+TGG 0.518566 4_1:-40375912 Msa0547400:CDS
AATAAGTTGGTGAATTTGGA+GGG 0.523273 4_1:-40375993 Msa0547400:CDS
CTCCAGAGCCAGTATGGTGG+TGG 0.533266 4_1:-40375681 Msa0547400:CDS
AAATGTATGATTCAGGTTCA+AGG 0.535524 4_1:-40375833 Msa0547400:CDS
TTCTGATATAATGCAAACAA+TGG 0.536311 4_1:-40376357 Msa0547400:CDS
TTGCAGAAAGAATCTCAAAT+GGG 0.545569 4_1:-40376134 Msa0547400:CDS
TACAAAGGATTTGGAACATG+TGG 0.546663 4_1:-40375889 Msa0547400:CDS
ACTTGCCTGGTGTTCCTGGT+AGG 0.547354 4_1:+40377617 None:intergenic
CTTATGTGAAATCTGCAACA+AGG 0.550563 4_1:-40377372 Msa0547400:CDS
ACATCATCAGAACCACCATT+GGG 0.553100 4_1:-40376413 Msa0547400:CDS
TAGTTTGATAGTGGTAATTG+TGG 0.556396 4_1:-40375506 Msa0547400:three_prime_UTR
AGAAACCTACCAGGAACACC+AGG 0.557766 4_1:-40377622 Msa0547400:intron
TTAGCGTAATTTCCCAATGG+TGG 0.571730 4_1:+40376401 None:intergenic
GAATGAGGTGAAACTGAAAA+GGG 0.590975 4_1:+40377730 None:intergenic
AATAGCAGCACCAATCTTGG+AGG 0.591091 4_1:-40375966 Msa0547400:CDS
TGGGATTGTGAATGGTACAA+AGG 0.593396 4_1:-40375904 Msa0547400:CDS
AAGTGAAGAGTTGAATAAGT+TGG 0.597167 4_1:-40376006 Msa0547400:CDS
AATCTCAAATGGGATCTACA+AGG 0.601252 4_1:-40376124 Msa0547400:CDS
TCTGAGTGAAACTGAAAACC+AGG 0.601782 4_1:+40376452 None:intergenic
AGAGAGTACAAATGTGATTG+TGG 0.604424 4_1:-40377068 Msa0547400:CDS
GGCGAGGACACAACCTACCA+TGG 0.608097 4_1:-40377316 Msa0547400:CDS
TCCAGATCCGGAATCAGAAG+TGG 0.621390 4_1:-40377435 Msa0547400:intron
GCAGCACCAATCTTGGAGGT+GGG 0.638474 4_1:-40375962 Msa0547400:CDS
GTGTTGGACTTGATTTGATG+AGG 0.644794 4_1:+40377684 None:intergenic
ATGTTAGCGTAATTTCCCAA+TGG 0.645008 4_1:+40376398 None:intergenic
AAACATTATAGTAGAAAACA+TGG 0.647572 4_1:-40377176 Msa0547400:CDS
TGCTAAAGGAAAATATCACA+GGG 0.654134 4_1:+40375374 None:intergenic
AATTTGCAGCTTCATCGGCG+AGG 0.683827 4_1:-40377332 Msa0547400:CDS
ATGGTGCTGGAATTGGAATG+AGG 0.685103 4_1:+40377715 None:intergenic
AATCTCCAGAGCCAGTATGG+TGG 0.695447 4_1:-40375684 Msa0547400:CDS
TTATTATAATTCAGCCACTG+TGG 0.703090 4_1:+40376317 None:intergenic
ACAAAGTGCAAAGATAACAA+CGG 0.712713 4_1:-40376549 Msa0547400:CDS
TGTTTGGATCACAACCACAG+TGG 0.860213 4_1:-40376331 Msa0547400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACTTAATGTATTTAGA+AGG + chr4_1:40376376-40376395 None:intergenic 15.0%
!!! TTTGGAATAAATAATAAATG+AGG - chr4_1:40376442-40376461 Msa0547400:CDS 15.0%
!! CAAAATTCTGAATATTTATA+GGG + chr4_1:40377695-40377714 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr4_1:40377696-40377715 None:intergenic 15.0%
!!! TTTAACTTAATGTATTTAGA+AGG + chr4_1:40376376-40376395 None:intergenic 15.0%
!!! TTTGGAATAAATAATAAATG+AGG - chr4_1:40376442-40376461 Msa0547400:CDS 15.0%
!! CAAAATTCTGAATATTTATA+GGG + chr4_1:40377695-40377714 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr4_1:40377696-40377715 None:intergenic 15.0%
!! TAATGATATATAGAAGAGAA+AGG + chr4_1:40375559-40375578 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG - chr4_1:40375950-40375969 Msa0547400:CDS 20.0%
!! AGATAGTAAATATATATACC+TGG + chr4_1:40376095-40376114 None:intergenic 20.0%
!! CCATTAAAATCATGAAATTA+AGG + chr4_1:40376263-40376282 None:intergenic 20.0%
!!! CCTTAATTTCATGATTTTAA+TGG - chr4_1:40376260-40376279 Msa0547400:CDS 20.0%
!!! TAATTTCATGATTTTAATGG+CGG - chr4_1:40376263-40376282 Msa0547400:CDS 20.0%
!! TAATTGAAAGAATGTTTGTT+TGG - chr4_1:40376424-40376443 Msa0547400:CDS 20.0%
!! TCAAATTCAAACAATATGTT+TGG - chr4_1:40377202-40377221 Msa0547400:CDS 20.0%
!! CAAATTCAAACAATATGTTT+GGG - chr4_1:40377203-40377222 Msa0547400:CDS 20.0%
!! TCAAAAGAAAAAAACCAAAT+GGG - chr4_1:40377316-40377335 Msa0547400:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr4_1:40377726-40377745 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr4_1:40377727-40377746 None:intergenic 20.0%
!! TAATGATATATAGAAGAGAA+AGG + chr4_1:40375559-40375578 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG - chr4_1:40375950-40375969 Msa0547400:CDS 20.0%
!! AGATAGTAAATATATATACC+TGG + chr4_1:40376095-40376114 None:intergenic 20.0%
!! CCATTAAAATCATGAAATTA+AGG + chr4_1:40376263-40376282 None:intergenic 20.0%
!!! CCTTAATTTCATGATTTTAA+TGG - chr4_1:40376260-40376279 Msa0547400:CDS 20.0%
!!! TAATTTCATGATTTTAATGG+CGG - chr4_1:40376263-40376282 Msa0547400:CDS 20.0%
!! TAATTGAAAGAATGTTTGTT+TGG - chr4_1:40376424-40376443 Msa0547400:CDS 20.0%
!! TCAAATTCAAACAATATGTT+TGG - chr4_1:40377202-40377221 Msa0547400:CDS 20.0%
!! CAAATTCAAACAATATGTTT+GGG - chr4_1:40377203-40377222 Msa0547400:CDS 20.0%
!! TCAAAAGAAAAAAACCAAAT+GGG - chr4_1:40377316-40377335 Msa0547400:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr4_1:40377726-40377745 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr4_1:40377727-40377746 None:intergenic 20.0%
!!! CAATTTCACAACTACTTTTT+CGG + chr4_1:40376310-40376329 None:intergenic 25.0%
! ATTATGTGTGTTAACAAATC+AGG - chr4_1:40376507-40376526 Msa0547400:CDS 25.0%
! TTCTGATATAATGCAAACAA+TGG - chr4_1:40376769-40376788 Msa0547400:intron 25.0%
! AATAGACAAATGTATGATTC+AGG - chr4_1:40377286-40377305 Msa0547400:CDS 25.0%
! GTCAAAAGAAAAAAACCAAA+TGG - chr4_1:40377315-40377334 Msa0547400:CDS 25.0%
!! GTTTTACAAGAGATTTTCTT+GGG - chr4_1:40377338-40377357 Msa0547400:CDS 25.0%
!! TTTTACAAGAGATTTTCTTG+GGG - chr4_1:40377339-40377358 Msa0547400:CDS 25.0%
! TCTAAATTGTAGTTTGATAG+TGG - chr4_1:40377611-40377630 Msa0547400:intron 25.0%
! CCAGAACAAAAATTAGATTA+GGG + chr4_1:40377654-40377673 None:intergenic 25.0%
!! CCTAATCTAATTTTTGTTCT+GGG - chr4_1:40377652-40377671 Msa0547400:CDS 25.0%
!!! CAATTTCACAACTACTTTTT+CGG + chr4_1:40376310-40376329 None:intergenic 25.0%
! ATTATGTGTGTTAACAAATC+AGG - chr4_1:40376507-40376526 Msa0547400:CDS 25.0%
! TTCTGATATAATGCAAACAA+TGG - chr4_1:40376769-40376788 Msa0547400:intron 25.0%
! AATAGACAAATGTATGATTC+AGG - chr4_1:40377286-40377305 Msa0547400:CDS 25.0%
! GTCAAAAGAAAAAAACCAAA+TGG - chr4_1:40377315-40377334 Msa0547400:CDS 25.0%
!! GTTTTACAAGAGATTTTCTT+GGG - chr4_1:40377338-40377357 Msa0547400:CDS 25.0%
!! TTTTACAAGAGATTTTCTTG+GGG - chr4_1:40377339-40377358 Msa0547400:CDS 25.0%
! TCTAAATTGTAGTTTGATAG+TGG - chr4_1:40377611-40377630 Msa0547400:intron 25.0%
! CCAGAACAAAAATTAGATTA+GGG + chr4_1:40377654-40377673 None:intergenic 25.0%
!! CCTAATCTAATTTTTGTTCT+GGG - chr4_1:40377652-40377671 Msa0547400:CDS 25.0%
!!! AGGTTTCTTTTTTTCTTAGC+TGG + chr4_1:40375492-40375511 None:intergenic 30.0%
AAGAAAAAAAGAAACCTACC+AGG - chr4_1:40375495-40375514 Msa0547400:three_prime_UTR 30.0%
TATTACTAAATGAACTTGCC+TGG + chr4_1:40375525-40375544 None:intergenic 30.0%
TGCAGATTTCACATAAGAAA+CGG + chr4_1:40375751-40375770 None:intergenic 30.0%
TTATGTGAAATCTGCAACAA+GGG - chr4_1:40375755-40375774 Msa0547400:CDS 30.0%
CAAAGATCAAATTCGAAAGA+AGG - chr4_1:40375853-40375872 Msa0547400:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr4_1:40376005-40376024 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr4_1:40376008-40376027 Msa0547400:CDS 30.0%
CGAAAAAGTAGTTGTGAAAT+TGG - chr4_1:40376308-40376327 Msa0547400:CDS 30.0%
AAAAGTAGTTGTGAAATTGG+TGG - chr4_1:40376311-40376330 Msa0547400:CDS 30.0%
AAAGTAGTTGTGAAATTGGT+GGG - chr4_1:40376312-40376331 Msa0547400:CDS 30.0%
TTTAAATTGCAGCAGTCTAA+AGG + chr4_1:40376351-40376370 None:intergenic 30.0%
ACAAAGTGCAAAGATAACAA+CGG - chr4_1:40376577-40376596 Msa0547400:CDS 30.0%
GGAAAAATATGAGGAATTCT+TGG + chr4_1:40376656-40376675 None:intergenic 30.0%
! AGAATTCCTCATATTTTTCC+TGG - chr4_1:40376656-40376675 Msa0547400:intron 30.0%
TGAAAACCAGGAAAAATATG+AGG + chr4_1:40376665-40376684 None:intergenic 30.0%
TTTCAGTTTCACTCAGAATT+TGG - chr4_1:40376680-40376699 Msa0547400:intron 30.0%
TTATTATAATTCAGCCACTG+TGG + chr4_1:40376812-40376831 None:intergenic 30.0%
TTGCAGAAAGAATCTCAAAT+GGG - chr4_1:40376992-40377011 Msa0547400:intron 30.0%
! GAAGACTGTGTTATTATCAT+TGG + chr4_1:40377038-40377057 None:intergenic 30.0%
AAGTGAAGAGTTGAATAAGT+TGG - chr4_1:40377120-40377139 Msa0547400:CDS 30.0%
!! GTTGAATAAGTTGGTGAATT+TGG - chr4_1:40377129-40377148 Msa0547400:CDS 30.0%
!! AATAAGTTGGTGAATTTGGA+GGG - chr4_1:40377133-40377152 Msa0547400:CDS 30.0%
! AATATGTTTGGGATTGTGAA+TGG - chr4_1:40377214-40377233 Msa0547400:CDS 30.0%
! AAATGTATGATTCAGGTTCA+AGG - chr4_1:40377293-40377312 Msa0547400:CDS 30.0%
AATCTCTTGTAAAACCCATT+TGG + chr4_1:40377333-40377352 None:intergenic 30.0%
! GGTTTTACAAGAGATTTTCT+TGG - chr4_1:40377337-40377356 Msa0547400:CDS 30.0%
TTTAATGGAATGGGATCATT+AGG - chr4_1:40377415-40377434 Msa0547400:CDS 30.0%
TGTGAACTTAACAAGAGATT+AGG - chr4_1:40377573-40377592 Msa0547400:intron 30.0%
GTGAACTTAACAAGAGATTA+GGG - chr4_1:40377574-40377593 Msa0547400:intron 30.0%
!! TAGTTTGATAGTGGTAATTG+TGG - chr4_1:40377620-40377639 Msa0547400:intron 30.0%
! CCCTAATCTAATTTTTGTTC+TGG - chr4_1:40377651-40377670 Msa0547400:CDS 30.0%
CCCAGAACAAAAATTAGATT+AGG + chr4_1:40377655-40377674 None:intergenic 30.0%
TTCTGGGCTAATTAAGTAAA+TGG - chr4_1:40377668-40377687 Msa0547400:CDS 30.0%
!!! AGGTTTCTTTTTTTCTTAGC+TGG + chr4_1:40375492-40375511 None:intergenic 30.0%
AAGAAAAAAAGAAACCTACC+AGG - chr4_1:40375495-40375514 Msa0547400:three_prime_UTR 30.0%
TATTACTAAATGAACTTGCC+TGG + chr4_1:40375525-40375544 None:intergenic 30.0%
TGCAGATTTCACATAAGAAA+CGG + chr4_1:40375751-40375770 None:intergenic 30.0%
TTATGTGAAATCTGCAACAA+GGG - chr4_1:40375755-40375774 Msa0547400:CDS 30.0%
CAAAGATCAAATTCGAAAGA+AGG - chr4_1:40375853-40375872 Msa0547400:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr4_1:40376005-40376024 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr4_1:40376008-40376027 Msa0547400:CDS 30.0%
CGAAAAAGTAGTTGTGAAAT+TGG - chr4_1:40376308-40376327 Msa0547400:CDS 30.0%
AAAAGTAGTTGTGAAATTGG+TGG - chr4_1:40376311-40376330 Msa0547400:CDS 30.0%
AAAGTAGTTGTGAAATTGGT+GGG - chr4_1:40376312-40376331 Msa0547400:CDS 30.0%
TTTAAATTGCAGCAGTCTAA+AGG + chr4_1:40376351-40376370 None:intergenic 30.0%
ACAAAGTGCAAAGATAACAA+CGG - chr4_1:40376577-40376596 Msa0547400:CDS 30.0%
GGAAAAATATGAGGAATTCT+TGG + chr4_1:40376656-40376675 None:intergenic 30.0%
! AGAATTCCTCATATTTTTCC+TGG - chr4_1:40376656-40376675 Msa0547400:intron 30.0%
TGAAAACCAGGAAAAATATG+AGG + chr4_1:40376665-40376684 None:intergenic 30.0%
TTTCAGTTTCACTCAGAATT+TGG - chr4_1:40376680-40376699 Msa0547400:intron 30.0%
TTATTATAATTCAGCCACTG+TGG + chr4_1:40376812-40376831 None:intergenic 30.0%
TTGCAGAAAGAATCTCAAAT+GGG - chr4_1:40376992-40377011 Msa0547400:intron 30.0%
! GAAGACTGTGTTATTATCAT+TGG + chr4_1:40377038-40377057 None:intergenic 30.0%
AAGTGAAGAGTTGAATAAGT+TGG - chr4_1:40377120-40377139 Msa0547400:CDS 30.0%
!! GTTGAATAAGTTGGTGAATT+TGG - chr4_1:40377129-40377148 Msa0547400:CDS 30.0%
!! AATAAGTTGGTGAATTTGGA+GGG - chr4_1:40377133-40377152 Msa0547400:CDS 30.0%
! AATATGTTTGGGATTGTGAA+TGG - chr4_1:40377214-40377233 Msa0547400:CDS 30.0%
! AAATGTATGATTCAGGTTCA+AGG - chr4_1:40377293-40377312 Msa0547400:CDS 30.0%
AATCTCTTGTAAAACCCATT+TGG + chr4_1:40377333-40377352 None:intergenic 30.0%
! GGTTTTACAAGAGATTTTCT+TGG - chr4_1:40377337-40377356 Msa0547400:CDS 30.0%
TTTAATGGAATGGGATCATT+AGG - chr4_1:40377415-40377434 Msa0547400:CDS 30.0%
TGTGAACTTAACAAGAGATT+AGG - chr4_1:40377573-40377592 Msa0547400:intron 30.0%
GTGAACTTAACAAGAGATTA+GGG - chr4_1:40377574-40377593 Msa0547400:intron 30.0%
!! TAGTTTGATAGTGGTAATTG+TGG - chr4_1:40377620-40377639 Msa0547400:intron 30.0%
! CCCTAATCTAATTTTTGTTC+TGG - chr4_1:40377651-40377670 Msa0547400:CDS 30.0%
CCCAGAACAAAAATTAGATT+AGG + chr4_1:40377655-40377674 None:intergenic 30.0%
TTCTGGGCTAATTAAGTAAA+TGG - chr4_1:40377668-40377687 Msa0547400:CDS 30.0%
GAATGAGGTGAAACTGAAAA+GGG + chr4_1:40375399-40375418 None:intergenic 35.0%
!!! CTTTTTTTCTTAGCTGGAAC+TGG + chr4_1:40375486-40375505 None:intergenic 35.0%
TATGTCACCAAAGTCATTGA+TGG - chr4_1:40375718-40375737 Msa0547400:CDS 35.0%
CTTATGTGAAATCTGCAACA+AGG - chr4_1:40375754-40375773 Msa0547400:CDS 35.0%
AAAGCTCATAGCAAGATTTG+TGG - chr4_1:40376031-40376050 Msa0547400:CDS 35.0%
! AGAGAGTACAAATGTGATTG+TGG - chr4_1:40376058-40376077 Msa0547400:CDS 35.0%
!!! AACTACTTTTTCGGTTGCAT+TGG + chr4_1:40376301-40376320 None:intergenic 35.0%
AAGTAGTTGTGAAATTGGTG+GGG - chr4_1:40376313-40376332 Msa0547400:CDS 35.0%
TGTGTGTTAACAAATCAGGA+AGG - chr4_1:40376511-40376530 Msa0547400:CDS 35.0%
ATGTTAGCGTAATTTCCCAA+TGG + chr4_1:40376731-40376750 None:intergenic 35.0%
ATGCAAACAATGGATGTGTT+TGG - chr4_1:40376779-40376798 Msa0547400:intron 35.0%
TTCATTACTCCATGTAGCAT+TGG + chr4_1:40376851-40376870 None:intergenic 35.0%
GTTGTTACTGACAAGTGATT+TGG + chr4_1:40376965-40376984 None:intergenic 35.0%
GTTGCAGAAAGAATCTCAAA+TGG - chr4_1:40376991-40377010 Msa0547400:intron 35.0%
AATCTCAAATGGGATCTACA+AGG - chr4_1:40377002-40377021 Msa0547400:intron 35.0%
CCTCATTAACAATGTGAAAG+TGG + chr4_1:40377072-40377091 None:intergenic 35.0%
CCACTTTCACATTGTTAATG+AGG - chr4_1:40377069-40377088 Msa0547400:CDS 35.0%
!! GAATAAGTTGGTGAATTTGG+AGG - chr4_1:40377132-40377151 Msa0547400:CDS 35.0%
TGTGAATGGTACAAAGGATT+TGG - chr4_1:40377228-40377247 Msa0547400:CDS 35.0%
! TACAAAGGATTTGGAACATG+TGG - chr4_1:40377237-40377256 Msa0547400:CDS 35.0%
! CAAGAACTTGGTGAGTTTAA+TGG - chr4_1:40377400-40377419 Msa0547400:CDS 35.0%
! ACTTGGTGAGTTTAATGGAA+TGG - chr4_1:40377405-40377424 Msa0547400:CDS 35.0%
CTTGGTGAGTTTAATGGAAT+GGG - chr4_1:40377406-40377425 Msa0547400:CDS 35.0%
GAGATTAGGGATTTCTATCA+TGG - chr4_1:40377587-40377606 Msa0547400:intron 35.0%
AAAGGGTTGTTTAGACATCA+TGG + chr4_1:40375382-40375401 None:intergenic 35.0%
GAATGAGGTGAAACTGAAAA+GGG + chr4_1:40375399-40375418 None:intergenic 35.0%
!!! CTTTTTTTCTTAGCTGGAAC+TGG + chr4_1:40375486-40375505 None:intergenic 35.0%
TATGTCACCAAAGTCATTGA+TGG - chr4_1:40375718-40375737 Msa0547400:CDS 35.0%
CTTATGTGAAATCTGCAACA+AGG - chr4_1:40375754-40375773 Msa0547400:CDS 35.0%
AAAGCTCATAGCAAGATTTG+TGG - chr4_1:40376031-40376050 Msa0547400:CDS 35.0%
! AGAGAGTACAAATGTGATTG+TGG - chr4_1:40376058-40376077 Msa0547400:CDS 35.0%
!!! AACTACTTTTTCGGTTGCAT+TGG + chr4_1:40376301-40376320 None:intergenic 35.0%
AAGTAGTTGTGAAATTGGTG+GGG - chr4_1:40376313-40376332 Msa0547400:CDS 35.0%
TGTGTGTTAACAAATCAGGA+AGG - chr4_1:40376511-40376530 Msa0547400:CDS 35.0%
ATGTTAGCGTAATTTCCCAA+TGG + chr4_1:40376731-40376750 None:intergenic 35.0%
ATGCAAACAATGGATGTGTT+TGG - chr4_1:40376779-40376798 Msa0547400:intron 35.0%
TTCATTACTCCATGTAGCAT+TGG + chr4_1:40376851-40376870 None:intergenic 35.0%
GTTGTTACTGACAAGTGATT+TGG + chr4_1:40376965-40376984 None:intergenic 35.0%
GTTGCAGAAAGAATCTCAAA+TGG - chr4_1:40376991-40377010 Msa0547400:intron 35.0%
AATCTCAAATGGGATCTACA+AGG - chr4_1:40377002-40377021 Msa0547400:intron 35.0%
CCTCATTAACAATGTGAAAG+TGG + chr4_1:40377072-40377091 None:intergenic 35.0%
CCACTTTCACATTGTTAATG+AGG - chr4_1:40377069-40377088 Msa0547400:CDS 35.0%
!! GAATAAGTTGGTGAATTTGG+AGG - chr4_1:40377132-40377151 Msa0547400:CDS 35.0%
TGTGAATGGTACAAAGGATT+TGG - chr4_1:40377228-40377247 Msa0547400:CDS 35.0%
! TACAAAGGATTTGGAACATG+TGG - chr4_1:40377237-40377256 Msa0547400:CDS 35.0%
! CAAGAACTTGGTGAGTTTAA+TGG - chr4_1:40377400-40377419 Msa0547400:CDS 35.0%
! ACTTGGTGAGTTTAATGGAA+TGG - chr4_1:40377405-40377424 Msa0547400:CDS 35.0%
CTTGGTGAGTTTAATGGAAT+GGG - chr4_1:40377406-40377425 Msa0547400:CDS 35.0%
GAGATTAGGGATTTCTATCA+TGG - chr4_1:40377587-40377606 Msa0547400:intron 35.0%
GGAATGAGGTGAAACTGAAA+AGG + chr4_1:40375400-40375419 None:intergenic 40.0%
ATTTGATGAGGAAGCTCTCA+TGG + chr4_1:40375433-40375452 None:intergenic 40.0%
! GTGTTGGACTTGATTTGATG+AGG + chr4_1:40375445-40375464 None:intergenic 40.0%
! CTGGATTTGGATTAGGGTTT+GGG + chr4_1:40375467-40375486 None:intergenic 40.0%
! ACTGGATTTGGATTAGGGTT+TGG + chr4_1:40375468-40375487 None:intergenic 40.0%
CTGGAACTGGATTTGGATTA+GGG + chr4_1:40375473-40375492 None:intergenic 40.0%
TTCTTAGCTGGAACTGGATT+TGG + chr4_1:40375480-40375499 None:intergenic 40.0%
CACATGAATGAATCCAGATC+CGG - chr4_1:40375679-40375698 Msa0547400:CDS 40.0%
ATAGCAACCACTTCTGATTC+CGG + chr4_1:40375701-40375720 None:intergenic 40.0%
TTTGTCGCCATCAATGACTT+TGG + chr4_1:40375728-40375747 None:intergenic 40.0%
ACCAGAATTTGCAGCTTCAT+CGG - chr4_1:40375789-40375808 Msa0547400:CDS 40.0%
!! CATGAACCTTCTAGAGCTTT+GGG - chr4_1:40375908-40375927 Msa0547400:CDS 40.0%
!! AAATCTCCCAAAGCTCTAGA+AGG + chr4_1:40375917-40375936 None:intergenic 40.0%
GAAAACATGGTGAGAAGAAG+TGG - chr4_1:40375963-40375982 Msa0547400:CDS 40.0%
! ATTGTGGCACAATTTTCTCC+AGG - chr4_1:40376074-40376093 Msa0547400:CDS 40.0%
TCTCAAATCCAACGTGTTCT+TGG + chr4_1:40376134-40376153 None:intergenic 40.0%
TCAGTAGTGGCTGCAATATA+CGG - chr4_1:40376188-40376207 Msa0547400:CDS 40.0%
CAGCAGCATTAAGCAACTTT+CGG - chr4_1:40376603-40376622 Msa0547400:intron 40.0%
TCTGAGTGAAACTGAAAACC+AGG + chr4_1:40376677-40376696 None:intergenic 40.0%
AACATCATCAGAACCACCAT+TGG - chr4_1:40376712-40376731 Msa0547400:intron 40.0%
ACATCATCAGAACCACCATT+GGG - chr4_1:40376713-40376732 Msa0547400:intron 40.0%
TTAGCGTAATTTCCCAATGG+TGG + chr4_1:40376728-40376747 None:intergenic 40.0%
AACAATAGCAGCACCAATCT+TGG - chr4_1:40377157-40377176 Msa0547400:CDS 40.0%
TAAATACCCACCTCCAAGAT+TGG + chr4_1:40377173-40377192 None:intergenic 40.0%
TGGGATTGTGAATGGTACAA+AGG - chr4_1:40377222-40377241 Msa0547400:CDS 40.0%
! ACAAGAGATTTTCTTGGGGT+TGG - chr4_1:40377343-40377362 Msa0547400:CDS 40.0%
CCAAGTTCTTGCTGCAAAAA+AGG + chr4_1:40377391-40377410 None:intergenic 40.0%
!!! CCTTTTTTGCAGCAAGAACT+TGG - chr4_1:40377388-40377407 Msa0547400:CDS 40.0%
AATAATCTCCAGAGCCAGTA+TGG - chr4_1:40377439-40377458 Msa0547400:intron 40.0%
! GATAGTGGTAATTGTGGTTG+TGG - chr4_1:40377626-40377645 Msa0547400:CDS 40.0%
GGAATGAGGTGAAACTGAAA+AGG + chr4_1:40375400-40375419 None:intergenic 40.0%
ATTTGATGAGGAAGCTCTCA+TGG + chr4_1:40375433-40375452 None:intergenic 40.0%
! GTGTTGGACTTGATTTGATG+AGG + chr4_1:40375445-40375464 None:intergenic 40.0%
! CTGGATTTGGATTAGGGTTT+GGG + chr4_1:40375467-40375486 None:intergenic 40.0%
! ACTGGATTTGGATTAGGGTT+TGG + chr4_1:40375468-40375487 None:intergenic 40.0%
CTGGAACTGGATTTGGATTA+GGG + chr4_1:40375473-40375492 None:intergenic 40.0%
TTCTTAGCTGGAACTGGATT+TGG + chr4_1:40375480-40375499 None:intergenic 40.0%
CACATGAATGAATCCAGATC+CGG - chr4_1:40375679-40375698 Msa0547400:CDS 40.0%
ATAGCAACCACTTCTGATTC+CGG + chr4_1:40375701-40375720 None:intergenic 40.0%
TTTGTCGCCATCAATGACTT+TGG + chr4_1:40375728-40375747 None:intergenic 40.0%
ACCAGAATTTGCAGCTTCAT+CGG - chr4_1:40375789-40375808 Msa0547400:CDS 40.0%
!! CATGAACCTTCTAGAGCTTT+GGG - chr4_1:40375908-40375927 Msa0547400:CDS 40.0%
!! AAATCTCCCAAAGCTCTAGA+AGG + chr4_1:40375917-40375936 None:intergenic 40.0%
GAAAACATGGTGAGAAGAAG+TGG - chr4_1:40375963-40375982 Msa0547400:CDS 40.0%
! ATTGTGGCACAATTTTCTCC+AGG - chr4_1:40376074-40376093 Msa0547400:CDS 40.0%
TCTCAAATCCAACGTGTTCT+TGG + chr4_1:40376134-40376153 None:intergenic 40.0%
TCAGTAGTGGCTGCAATATA+CGG - chr4_1:40376188-40376207 Msa0547400:CDS 40.0%
CAGCAGCATTAAGCAACTTT+CGG - chr4_1:40376603-40376622 Msa0547400:intron 40.0%
TCTGAGTGAAACTGAAAACC+AGG + chr4_1:40376677-40376696 None:intergenic 40.0%
AACATCATCAGAACCACCAT+TGG - chr4_1:40376712-40376731 Msa0547400:intron 40.0%
ACATCATCAGAACCACCATT+GGG - chr4_1:40376713-40376732 Msa0547400:intron 40.0%
TTAGCGTAATTTCCCAATGG+TGG + chr4_1:40376728-40376747 None:intergenic 40.0%
AACAATAGCAGCACCAATCT+TGG - chr4_1:40377157-40377176 Msa0547400:CDS 40.0%
TAAATACCCACCTCCAAGAT+TGG + chr4_1:40377173-40377192 None:intergenic 40.0%
TGGGATTGTGAATGGTACAA+AGG - chr4_1:40377222-40377241 Msa0547400:CDS 40.0%
! ACAAGAGATTTTCTTGGGGT+TGG - chr4_1:40377343-40377362 Msa0547400:CDS 40.0%
CCAAGTTCTTGCTGCAAAAA+AGG + chr4_1:40377391-40377410 None:intergenic 40.0%
!!! CCTTTTTTGCAGCAAGAACT+TGG - chr4_1:40377388-40377407 Msa0547400:CDS 40.0%
AATAATCTCCAGAGCCAGTA+TGG - chr4_1:40377439-40377458 Msa0547400:intron 40.0%
! GATAGTGGTAATTGTGGTTG+TGG - chr4_1:40377626-40377645 Msa0547400:CDS 40.0%
! ATGGTGCTGGAATTGGAATG+AGG + chr4_1:40375414-40375433 None:intergenic 45.0%
! TTGGATTAGGGTTTGGGTGT+TGG + chr4_1:40375461-40375480 None:intergenic 45.0%
GCTGGAACTGGATTTGGATT+AGG + chr4_1:40375474-40375493 None:intergenic 45.0%
TTTGCTTCAGCTTCCATGGT+AGG + chr4_1:40375826-40375845 None:intergenic 45.0%
!! CCAAAGCTCTAGAAGGTTCA+TGG + chr4_1:40375910-40375929 None:intergenic 45.0%
!! CCATGAACCTTCTAGAGCTT+TGG - chr4_1:40375907-40375926 Msa0547400:CDS 45.0%
!! AGAGCTTTGGGAGATTTGAC+AGG - chr4_1:40375920-40375939 Msa0547400:CDS 45.0%
CAGATCCAATGACTCAGTAG+TGG - chr4_1:40376175-40376194 Msa0547400:CDS 45.0%
CGAAAGTTGCTTAATGCTGC+TGG + chr4_1:40376605-40376624 None:intergenic 45.0%
TGTTTGGATCACAACCACAG+TGG - chr4_1:40376795-40376814 Msa0547400:intron 45.0%
!! CCATGTAGCATTGGCAAAGA+TGG + chr4_1:40376842-40376861 None:intergenic 45.0%
CCATCTTTGCCAATGCTACA+TGG - chr4_1:40376839-40376858 Msa0547400:intron 45.0%
AATAGCAGCACCAATCTTGG+AGG - chr4_1:40377160-40377179 Msa0547400:CDS 45.0%
!!! GGAACATGTGGTTTTGTCTG+TGG - chr4_1:40377249-40377268 Msa0547400:CDS 45.0%
! ATGGTGCTGGAATTGGAATG+AGG + chr4_1:40375414-40375433 None:intergenic 45.0%
! TTGGATTAGGGTTTGGGTGT+TGG + chr4_1:40375461-40375480 None:intergenic 45.0%
GCTGGAACTGGATTTGGATT+AGG + chr4_1:40375474-40375493 None:intergenic 45.0%
TTTGCTTCAGCTTCCATGGT+AGG + chr4_1:40375826-40375845 None:intergenic 45.0%
!! CCAAAGCTCTAGAAGGTTCA+TGG + chr4_1:40375910-40375929 None:intergenic 45.0%
!! CCATGAACCTTCTAGAGCTT+TGG - chr4_1:40375907-40375926 Msa0547400:CDS 45.0%
!! AGAGCTTTGGGAGATTTGAC+AGG - chr4_1:40375920-40375939 Msa0547400:CDS 45.0%
CAGATCCAATGACTCAGTAG+TGG - chr4_1:40376175-40376194 Msa0547400:CDS 45.0%
CGAAAGTTGCTTAATGCTGC+TGG + chr4_1:40376605-40376624 None:intergenic 45.0%
TGTTTGGATCACAACCACAG+TGG - chr4_1:40376795-40376814 Msa0547400:intron 45.0%
!! CCATGTAGCATTGGCAAAGA+TGG + chr4_1:40376842-40376861 None:intergenic 45.0%
CCATCTTTGCCAATGCTACA+TGG - chr4_1:40376839-40376858 Msa0547400:intron 45.0%
AATAGCAGCACCAATCTTGG+AGG - chr4_1:40377160-40377179 Msa0547400:CDS 45.0%
!!! GGAACATGTGGTTTTGTCTG+TGG - chr4_1:40377249-40377268 Msa0547400:CDS 45.0%
!! ATTAAGTTAAATTAATTTAA+TGG - chr4_1:40376385-40376404 Msa0547400:CDS 5.0%
!! ATTAAGTTAAATTAATTTAA+TGG - chr4_1:40376385-40376404 Msa0547400:CDS 5.0%
! AGCTCTCATGGTGCTGGAAT+TGG + chr4_1:40375421-40375440 None:intergenic 50.0%
AGAAACCTACCAGGAACACC+AGG - chr4_1:40375504-40375523 Msa0547400:three_prime_UTR 50.0%
ATGAACTTGCCTGGTGTTCC+TGG + chr4_1:40375516-40375535 None:intergenic 50.0%
TCCAGATCCGGAATCAGAAG+TGG - chr4_1:40375691-40375710 Msa0547400:CDS 50.0%
ACCACTTCTGATTCCGGATC+TGG + chr4_1:40375695-40375714 None:intergenic 50.0%
GCTGCAAATTCTGGTCTCTC+TGG + chr4_1:40375784-40375803 None:intergenic 50.0%
GCCGATGAAGCTGCAAATTC+TGG + chr4_1:40375793-40375812 None:intergenic 50.0%
AATTTGCAGCTTCATCGGCG+AGG - chr4_1:40375794-40375813 Msa0547400:CDS 50.0%
GCTCTTTGCTTCAGCTTCCA+TGG + chr4_1:40375830-40375849 None:intergenic 50.0%
TGGTGCACACAAGTCTTCTC+AGG + chr4_1:40375890-40375909 None:intergenic 50.0%
! CGTGTTCTTGGTGACTGCAA+TGG + chr4_1:40376122-40376141 None:intergenic 50.0%
TGCAGTCACCAAGAACACGT+TGG - chr4_1:40376123-40376142 Msa0547400:CDS 50.0%
TGCAGCCACTACTGAGTCAT+TGG + chr4_1:40376183-40376202 None:intergenic 50.0%
AATCTCCAGAGCCAGTATGG+TGG - chr4_1:40377442-40377461 Msa0547400:intron 50.0%
AGTAGTGTCCACCACCATAC+TGG + chr4_1:40377456-40377475 None:intergenic 50.0%
! AGCTCTCATGGTGCTGGAAT+TGG + chr4_1:40375421-40375440 None:intergenic 50.0%
AGAAACCTACCAGGAACACC+AGG - chr4_1:40375504-40375523 Msa0547400:three_prime_UTR 50.0%
ATGAACTTGCCTGGTGTTCC+TGG + chr4_1:40375516-40375535 None:intergenic 50.0%
TCCAGATCCGGAATCAGAAG+TGG - chr4_1:40375691-40375710 Msa0547400:CDS 50.0%
ACCACTTCTGATTCCGGATC+TGG + chr4_1:40375695-40375714 None:intergenic 50.0%
GCTGCAAATTCTGGTCTCTC+TGG + chr4_1:40375784-40375803 None:intergenic 50.0%
GCCGATGAAGCTGCAAATTC+TGG + chr4_1:40375793-40375812 None:intergenic 50.0%
AATTTGCAGCTTCATCGGCG+AGG - chr4_1:40375794-40375813 Msa0547400:CDS 50.0%
GCTCTTTGCTTCAGCTTCCA+TGG + chr4_1:40375830-40375849 None:intergenic 50.0%
TGGTGCACACAAGTCTTCTC+AGG + chr4_1:40375890-40375909 None:intergenic 50.0%
! CGTGTTCTTGGTGACTGCAA+TGG + chr4_1:40376122-40376141 None:intergenic 50.0%
TGCAGTCACCAAGAACACGT+TGG - chr4_1:40376123-40376142 Msa0547400:CDS 50.0%
TGCAGCCACTACTGAGTCAT+TGG + chr4_1:40376183-40376202 None:intergenic 50.0%
AATCTCCAGAGCCAGTATGG+TGG - chr4_1:40377442-40377461 Msa0547400:intron 50.0%
AGTAGTGTCCACCACCATAC+TGG + chr4_1:40377456-40377475 None:intergenic 50.0%
TGAGGAAGCTCTCATGGTGC+TGG + chr4_1:40375427-40375446 None:intergenic 55.0%
ACTTGCCTGGTGTTCCTGGT+AGG + chr4_1:40375512-40375531 None:intergenic 55.0%
AGCAGCACCAATCTTGGAGG+TGG - chr4_1:40377163-40377182 Msa0547400:CDS 55.0%
GCAGCACCAATCTTGGAGGT+GGG - chr4_1:40377164-40377183 Msa0547400:CDS 55.0%
TGAGGAAGCTCTCATGGTGC+TGG + chr4_1:40375427-40375446 None:intergenic 55.0%
ACTTGCCTGGTGTTCCTGGT+AGG + chr4_1:40375512-40375531 None:intergenic 55.0%
AGCAGCACCAATCTTGGAGG+TGG - chr4_1:40377163-40377182 Msa0547400:CDS 55.0%
GCAGCACCAATCTTGGAGGT+GGG - chr4_1:40377164-40377183 Msa0547400:CDS 55.0%
GGCGAGGACACAACCTACCA+TGG - chr4_1:40375810-40375829 Msa0547400:CDS 60.0%
CTCCAGAGCCAGTATGGTGG+TGG - chr4_1:40377445-40377464 Msa0547400:intron 60.0%
!! GTCCACCACCATACTGGCTC+TGG + chr4_1:40377450-40377469 None:intergenic 60.0%
GGCGAGGACACAACCTACCA+TGG - chr4_1:40375810-40375829 Msa0547400:CDS 60.0%
CTCCAGAGCCAGTATGGTGG+TGG - chr4_1:40377445-40377464 Msa0547400:intron 60.0%
!! GTCCACCACCATACTGGCTC+TGG + chr4_1:40377450-40377469 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 40375381 40377767 40375381 ID=Msa0547400;Name=Msa0547400
chr4_1 mRNA 40375381 40377767 40375381 ID=Msa0547400-mRNA-1;Parent=Msa0547400;Name=Msa0547400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.33|1|1|1|3|287|498
chr4_1 exon 40375381 40376619 40375381 ID=Msa0547400-mRNA-1:exon:10315;Parent=Msa0547400-mRNA-1
chr4_1 exon 40377053 40377452 40377053 ID=Msa0547400-mRNA-1:exon:10314;Parent=Msa0547400-mRNA-1
chr4_1 exon 40377623 40377767 40377623 ID=Msa0547400-mRNA-1:exon:10313;Parent=Msa0547400-mRNA-1
chr4_1 CDS 40377623 40377767 40377623 ID=Msa0547400-mRNA-1:cds;Parent=Msa0547400-mRNA-1
chr4_1 CDS 40377053 40377452 40377053 ID=Msa0547400-mRNA-1:cds;Parent=Msa0547400-mRNA-1
chr4_1 CDS 40375668 40376619 40375668 ID=Msa0547400-mRNA-1:cds;Parent=Msa0547400-mRNA-1
chr4_1 three_prime_UTR 40375381 40375667 40375381 ID=Msa0547400-mRNA-1:three_prime_utr;Parent=Msa0547400-mRNA-1
Gene Sequence

>Msa0547400

ATGATGTCTAAACAACCCTTTTCAGTTTCACCTCATTCCAATTCCAGCACCATGAGAGCTTCCTCATCAAATCAAGTCCAACACCCAAACCCTAATCCAAATCCAGTTCCAGCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCGGAATCAGAAGTGGTTGCTATGTCACCAAAGTCATTGATGGCGACAAACCGTTTCTTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTTCATCGGCGAGGACACAACCTACCATGGAAGCTGAAGCAAAGAGCAAACAAAGATCAAATTCGAAAGAAGGTTTATGTGTGTCCTGAGAAGACTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAGATTTGTGGAACTAGAGAGTACAAATGTGATTGTGGCACAATTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGTGATGCATTAACTGAACAAAGTGCAAAGATAACAACGGTTCCAGCAGCATTAAGCAACTTTCGGAATGATCATTTGACGAATACTCAAACTCCAAGAATTCCTCATATTTTTCCTGGTTTTCAGTTTCACTCAGAATTTGGTAATTCAGCAACATCATCAGAACCACCATTGGGAAATTACGCTAACATTTCTCATCTTCATCAAAATTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAACCACAGTGGCTGAATTATAATAATACTAATCCATCTTTGCCAATGCTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGATTTGTCTGCTAGTGTAATAAGCTCTTTGTACTTGAGTAGAAGTCAGAATCAGAATCAACAAGAAGCACCAAATCACTTGTCAGTAACAACATCACTGTTGCAGAAAGAATCTCAAATGGGATCTACAAGGACAATAATTACCAATGATAATAACACAGTCTTCAACAATTTGAACCACTTTCACATTGTTAATGAGGTTCAGAAATTTTATAACAAGCAATGTGAAAGTGAAGAGTTGAATAAGTTGGTGAATTTGGAGGGAAACAATAGCAGCACCAATCTTGGAGGTGGGTATTTATTAAATGATTCAAATTCAAACAATATGTTTGGGATTGTGAATGGTACAAAGGATTTGGAACATGTGGTTTTGTCTGTGGATAAAGAGACAACAAATAGACAAATGTATGATTCAGGTTCAAGGTCAAAAGAAAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGAAGATGTCTCAATGAGTAGACCTTTTTTGCAGCAAGAACTTGGTGAGTTTAATGGAATGGGATCATTAGGAAATAATCTCCAGAGCCAGTATGGTGGTGGACACTACTGCTAG

Protein sequence

>Msa0547400

MMSKQPFSVSPHSNSSTMRASSSNQVQHPNPNPNPVPAKKKRNLPGTPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFHSEFGNSATSSEPPLGNYANISHLHQNSDIMQTMDVFGSQPQWLNYNNTNPSLPMLHGVMKQEQEENKDLSASVISSLYLSRSQNQNQQEAPNHLSVTTSLLQKESQMGSTRTIITNDNNTVFNNLNHFHIVNEVQKFYNKQCESEELNKLVNLEGNNSSTNLGGGYLLNDSNSNNMFGIVNGTKDLEHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGEDVSMSRPFLQQELGEFNGMGSLGNNLQSQYGGGHYC*