Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859450 | XP_003616827.2 | 95.547 | 494 | 13 | 1 | 1 | 485 | 1 | 494 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859450 | sp|Q9MAU5|Y1049_ARATH | 57.826 | 460 | 183 | 3 | 30 | 480 | 27 | 484 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859450 | G7K7F5 | 95.547 | 494 | 13 | 1 | 1 | 485 | 1 | 494 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048000 | Msa0859450 | 0.804350 | 2.253693e-49 | -8.615850e-47 |
| Msa0651270 | Msa0859450 | 0.815250 | 1.018017e-51 | -8.615850e-47 |
| Msa0691050 | Msa0859450 | 0.808699 | 2.723831e-50 | -8.615850e-47 |
| Msa0693380 | Msa0859450 | 0.810233 | 1.276269e-50 | -8.615850e-47 |
| Msa0738940 | Msa0859450 | 0.881956 | 1.558809e-70 | -8.615850e-47 |
| Msa0757080 | Msa0859450 | 0.804935 | 1.701428e-49 | -8.615850e-47 |
| Msa0819430 | Msa0859450 | 0.882731 | 8.142274e-71 | -8.615850e-47 |
| Msa0829620 | Msa0859450 | 0.803014 | 4.265874e-49 | -8.615850e-47 |
| Msa0217400 | Msa0859450 | 0.808754 | 2.650836e-50 | -8.615850e-47 |
| Msa0376590 | Msa0859450 | 0.800182 | 1.625306e-48 | -8.615850e-47 |
| Msa0436370 | Msa0859450 | 0.810928 | 9.030824e-51 | -8.615850e-47 |
| Msa0445280 | Msa0859450 | 0.814007 | 1.918534e-51 | -8.615850e-47 |
| Msa0448550 | Msa0859450 | -0.800231 | 1.587864e-48 | -8.615850e-47 |
| Msa0464900 | Msa0859450 | 0.829863 | 4.057046e-55 | -8.615850e-47 |
| Msa0260810 | Msa0859450 | 0.809092 | 2.244404e-50 | -8.615850e-47 |
| Msa0317390 | Msa0859450 | 0.808974 | 2.378574e-50 | -8.615850e-47 |
| Msa0335040 | Msa0859450 | 0.814636 | 1.392718e-51 | -8.615850e-47 |
| Msa0484780 | Msa0859450 | 0.821720 | 3.475483e-53 | -8.615850e-47 |
| Msa0516370 | Msa0859450 | 0.801876 | 7.321045e-49 | -8.615850e-47 |
| Msa0567020 | Msa0859450 | 0.808643 | 2.799989e-50 | -8.615850e-47 |
| Msa0572480 | Msa0859450 | 0.821219 | 4.534818e-53 | -8.615850e-47 |
| Msa0859450 | Msa0867890 | 0.805829 | 1.105009e-49 | -8.615850e-47 |
| Msa0859450 | Msa0908170 | 0.823899 | 1.080022e-53 | -8.615850e-47 |
| Msa0859450 | Msa1037700 | -0.804688 | 1.915865e-49 | -8.615850e-47 |
| Msa0859450 | Msa1080160 | 0.822738 | 2.016771e-53 | -8.615850e-47 |
| Msa0859450 | Msa1082500 | 0.801116 | 1.047920e-48 | -8.615850e-47 |
| Msa0859450 | Msa1084260 | 0.803392 | 3.564112e-49 | -8.615850e-47 |
| Msa0859450 | Msa1379850 | 0.808967 | 2.387459e-50 | -8.615850e-47 |
| Msa0859450 | Msa1404540 | 0.809941 | 1.475030e-50 | -8.615850e-47 |
| Msa0859450 | Msa1410210 | 0.802265 | 6.088581e-49 | -8.615850e-47 |
| Msa0859450 | Msa1431060 | 0.805095 | 1.575200e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859450 | MtrunA17_Chr5g0438581 | 95.547 | 494 | 13 | 1 | 1 | 485 | 1 | 494 | 0.0 | 946 |
| Msa0859450 | MtrunA17_Chr5g0445001 | 47.854 | 466 | 230 | 4 | 29 | 485 | 24 | 485 | 4.22e-153 | 445 |
| Msa0859450 | MtrunA17_Chr3g0100111 | 43.532 | 487 | 263 | 4 | 6 | 483 | 260 | 743 | 2.26e-130 | 395 |
| Msa0859450 | MtrunA17_Chr3g0100111 | 40.517 | 116 | 68 | 1 | 25 | 140 | 22 | 136 | 2.71e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859450 | AT1G04970.1 | 57.826 | 460 | 183 | 3 | 30 | 480 | 27 | 484 | 0.0 | 556 |
| Msa0859450 | AT1G04970.2 | 57.429 | 350 | 139 | 2 | 140 | 480 | 10 | 358 | 8.70e-146 | 422 |
| Msa0859450 | AT1G04970.3 | 57.429 | 350 | 139 | 2 | 140 | 480 | 10 | 358 | 8.70e-146 | 422 |
| Msa0859450 | AT3G20270.5 | 36.885 | 488 | 277 | 5 | 4 | 472 | 34 | 509 | 1.58e-113 | 345 |
| Msa0859450 | AT3G20270.2 | 36.885 | 488 | 277 | 5 | 4 | 472 | 34 | 509 | 1.58e-113 | 345 |
| Msa0859450 | AT3G20270.4 | 36.885 | 488 | 277 | 5 | 4 | 472 | 34 | 509 | 1.58e-113 | 345 |
| Msa0859450 | AT3G20270.1 | 36.885 | 488 | 277 | 5 | 4 | 472 | 241 | 716 | 1.56e-110 | 343 |
| Msa0859450 | AT3G20270.3 | 36.885 | 488 | 277 | 5 | 4 | 472 | 241 | 716 | 1.56e-110 | 343 |
| Msa0859450 | AT3G20270.6 | 36.613 | 437 | 246 | 5 | 4 | 421 | 34 | 458 | 1.20e-96 | 300 |
Find 110 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAAGTTGAACTTAAAT+TGG | 0.156959 | 5_4:-57783940 | Msa0859450:CDS |
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5_4:-57783859 | Msa0859450:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5_4:+57783041 | None:intergenic |
| GATGAATTTGTGCATAAAAT+TGG | 0.186810 | 5_4:+57783422 | None:intergenic |
| TCAGGTTTGGTCAAAATAAA+TGG | 0.203844 | 5_4:-57782273 | Msa0859450:CDS |
| GGAATTGAGATTGTTGCTTC+TGG | 0.206164 | 5_4:-57784764 | Msa0859450:CDS |
| GGAGAACCAGGAAGGATATT+TGG | 0.213932 | 5_4:-57783913 | Msa0859450:CDS |
| TCTACGAATGTTCCTTATTC+AGG | 0.249285 | 5_4:-57782181 | Msa0859450:intron |
| CTTATGAGTATAGTAGTATT+TGG | 0.262312 | 5_4:-57784712 | Msa0859450:CDS |
| TCACGAAATTAAGGCCGTTT+TGG | 0.274986 | 5_4:+57784954 | None:intergenic |
| TAAGGTGAAACCATGAATAA+TGG | 0.283240 | 5_4:+57781515 | None:intergenic |
| AATGCCTTCTCCAAGATTCT+TGG | 0.286219 | 5_4:+57783637 | None:intergenic |
| TCAATAATTGTCCACATAAC+TGG | 0.286728 | 5_4:+57781591 | None:intergenic |
| GCCATGAATTCTCATGTAAT+TGG | 0.288094 | 5_4:-57781190 | Msa0859450:three_prime_UTR |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5_4:+57783042 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5_4:+57782169 | None:intergenic |
| CCACAGATGATTCAAGCTTC+AGG | 0.313074 | 5_4:-57782291 | Msa0859450:intron |
| TCCAATTACATGAGAATTCA+TGG | 0.329077 | 5_4:+57781189 | None:intergenic |
| GGTTAGTTGTAATTTGAGTT+TGG | 0.343049 | 5_4:-57784741 | Msa0859450:CDS |
| CTTAGATGTGCATTTGCATA+TGG | 0.343364 | 5_4:+57781555 | None:intergenic |
| TGAGATCCAAATATCCTTCC+TGG | 0.345049 | 5_4:+57783907 | None:intergenic |
| AAGTCTTCCGAAGGAGGTTC+CGG | 0.360461 | 5_4:-57783591 | Msa0859450:CDS |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5_4:-57784683 | Msa0859450:CDS |
| CCAATTCAGATCTGCGACTA+AGG | 0.374932 | 5_4:+57781144 | None:intergenic |
| TGAAGGAAGAGGTGAATAGT+AGG | 0.377993 | 5_4:+57785041 | None:intergenic |
| TTACCCTTGCCCATTATTCA+TGG | 0.394754 | 5_4:-57781525 | Msa0859450:CDS |
| TGAGGTTGTTGGTGGTTCAT+TGG | 0.398108 | 5_4:+57785110 | None:intergenic |
| GAATTGAGATTGTTGCTTCT+GGG | 0.399939 | 5_4:-57784763 | Msa0859450:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.399972 | 5_4:-57784696 | Msa0859450:CDS |
| ATGGAAGTTGAACTTAAATT+GGG | 0.400019 | 5_4:-57783939 | Msa0859450:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5_4:-57782234 | Msa0859450:CDS |
| ATATTTGGATCTCAAACTTA+AGG | 0.406500 | 5_4:-57783898 | Msa0859450:CDS |
| AATGCTATCACCAAGAATCT+TGG | 0.412923 | 5_4:-57783647 | Msa0859450:CDS |
| GGGTAATTGGAGTGAAACTA+TGG | 0.413154 | 5_4:+57784901 | None:intergenic |
| GATTATCTCTGCGTCTTGTA+AGG | 0.416518 | 5_4:+57781497 | None:intergenic |
| CCAATTACCCAATATTGAAA+AGG | 0.416560 | 5_4:-57784888 | Msa0859450:CDS |
| AGTTGAACTTAAATTGGGAT+TGG | 0.424622 | 5_4:-57783934 | Msa0859450:CDS |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5_4:-57784666 | Msa0859450:intron |
| TATATCTTTGTCTTCTCCTC+CGG | 0.426541 | 5_4:-57783018 | Msa0859450:CDS |
| TCATCGACCGGAACCTCCTT+CGG | 0.427115 | 5_4:+57783584 | None:intergenic |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5_4:+57784683 | None:intergenic |
| GTTGTGGAAATTGAGGTTGT+TGG | 0.431931 | 5_4:+57785099 | None:intergenic |
| GAGTTCTTGTGGCAGAGGTT+AGG | 0.432697 | 5_4:+57783452 | None:intergenic |
| TTCAGGCGAAATTTATGCAT+TGG | 0.438077 | 5_4:-57783145 | Msa0859450:intron |
| AAGGTGAAACCATGAATAAT+GGG | 0.440200 | 5_4:+57781516 | None:intergenic |
| TTGTGGCAGAGGTTAGGAAT+AGG | 0.440618 | 5_4:+57783458 | None:intergenic |
| GATGATTCAAGCTTCAGGTT+TGG | 0.443327 | 5_4:-57782286 | Msa0859450:CDS |
| GTTGTAATTTGAGTTTGGAT+TGG | 0.444738 | 5_4:-57784736 | Msa0859450:CDS |
| GGTGCATCTTGGCTTTATCA+AGG | 0.447248 | 5_4:-57783831 | Msa0859450:CDS |
| TTATTATTCCTCAGTTGTAC+AGG | 0.451409 | 5_4:-57783070 | Msa0859450:CDS |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5_4:-57782218 | Msa0859450:CDS |
| TACTGAGTGAGTCGTCGATT+GGG | 0.463677 | 5_4:-57783523 | Msa0859450:CDS |
| TTTGTCTTCTCCTCCGGTTG+TGG | 0.464481 | 5_4:-57783012 | Msa0859450:CDS |
| CGATTGGGTTTGAAACGAAT+GGG | 0.465684 | 5_4:-57783508 | Msa0859450:CDS |
| TGATCTGAAATCTCCACAAC+CGG | 0.477470 | 5_4:+57782999 | None:intergenic |
| GATCTAGATGTATAAAATAC+AGG | 0.477668 | 5_4:-57781233 | Msa0859450:three_prime_UTR |
| GAGTATAGTAGTATTTGGTT+TGG | 0.487613 | 5_4:-57784707 | Msa0859450:CDS |
| TTACTGAGTGAGTCGTCGAT+TGG | 0.487683 | 5_4:-57783524 | Msa0859450:CDS |
| TCGATTGGGTTTGAAACGAA+TGG | 0.488846 | 5_4:-57783509 | Msa0859450:CDS |
| AGTAGGAGAAGGAAGAAGAA+AGG | 0.489173 | 5_4:+57785058 | None:intergenic |
| TTAATAGGGATATGAAAGCT+TGG | 0.490488 | 5_4:+57784981 | None:intergenic |
| CTCGTAGGTACCATCAGATT+GGG | 0.490558 | 5_4:-57782243 | Msa0859450:CDS |
| CCTCGTAGGTACCATCAGAT+TGG | 0.492012 | 5_4:-57782244 | Msa0859450:CDS |
| GATTCTTCTATTGTTAAGCC+TGG | 0.493921 | 5_4:-57784794 | Msa0859450:CDS |
| GGTACAAGAATTCCAATGTT+GGG | 0.495246 | 5_4:-57784866 | Msa0859450:CDS |
| CAATTACCCAATATTGAAAA+GGG | 0.507561 | 5_4:-57784887 | Msa0859450:CDS |
| GATATTTCAATAAAATTGGA+TGG | 0.510412 | 5_4:-57783855 | Msa0859450:CDS |
| GTGGAAATTGAGGTTGTTGG+TGG | 0.511913 | 5_4:+57785102 | None:intergenic |
| GCAAATGCACATCTAAGTAA+AGG | 0.513079 | 5_4:-57781549 | Msa0859450:CDS |
| GAAATTTATGCATTGGATTG+TGG | 0.522169 | 5_4:-57783138 | Msa0859450:CDS |
| AATTGAGATTGTTGCTTCTG+GGG | 0.524103 | 5_4:-57784762 | Msa0859450:CDS |
| TCCCTATTAATCACCCAAAA+CGG | 0.536290 | 5_4:-57784968 | Msa0859450:CDS |
| AAGAGGTGAATAGTAGGAGA+AGG | 0.537307 | 5_4:+57785047 | None:intergenic |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5_4:-57783101 | Msa0859450:CDS |
| GTGCATCTTGGCTTTATCAA+GGG | 0.540311 | 5_4:-57783830 | Msa0859450:intron |
| AATTGGATGGTGGTGCATCT+TGG | 0.543201 | 5_4:-57783842 | Msa0859450:CDS |
| ATTGTTAAGCCTGGTGAGAG+TGG | 0.546066 | 5_4:-57784785 | Msa0859450:CDS |
| TCATTGAAATGGAGCAACAT+TGG | 0.550438 | 5_4:-57782207 | Msa0859450:CDS |
| ACATCTAGATCTAGGCATGA+TGG | 0.553285 | 5_4:+57781245 | None:intergenic |
| TTGTGATTGCGTGTGAATGA+AGG | 0.554829 | 5_4:+57785024 | None:intergenic |
| TTTGAAAAGTCTTCCGAAGG+AGG | 0.555501 | 5_4:-57783597 | Msa0859450:CDS |
| GGGTACAAGAATTCCAATGT+TGG | 0.558223 | 5_4:-57784867 | Msa0859450:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5_4:+57783107 | None:intergenic |
| GGCAGAGGTTAGGAATAGGT+AGG | 0.566366 | 5_4:+57783462 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+AGG | 0.576449 | 5_4:-57782990 | Msa0859450:CDS |
| ATCTTGGAGAAGGCATTACA+AGG | 0.578899 | 5_4:-57783631 | Msa0859450:CDS |
| AACAGCCTCGTCTAAAGAGA+TGG | 0.579922 | 5_4:+57783388 | None:intergenic |
| ATCTCAATTCCACTCTCACC+AGG | 0.579964 | 5_4:+57784776 | None:intergenic |
| TAAATTGGGATTGGAGAACC+AGG | 0.581245 | 5_4:-57783925 | Msa0859450:CDS |
| TTTGTGGGTTGTGGAAATTG+AGG | 0.582939 | 5_4:+57785092 | None:intergenic |
| GCAGAGGTTAGGAATAGGTA+GGG | 0.583860 | 5_4:+57783463 | None:intergenic |
| GAAACCATGAATAATGGGCA+AGG | 0.588237 | 5_4:+57781521 | None:intergenic |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5_4:-57783097 | Msa0859450:CDS |
| AACGAAGAGTGATCATCGAC+CGG | 0.595323 | 5_4:+57783572 | None:intergenic |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5_4:+57782233 | None:intergenic |
| ATCACCAAGAATCTTGGAGA+AGG | 0.605412 | 5_4:-57783641 | Msa0859450:CDS |
| AAAACTTACATCATAATACA+AGG | 0.616369 | 5_4:+57783349 | None:intergenic |
| TTGCGTGTGAATGAAGGAAG+AGG | 0.616471 | 5_4:+57785030 | None:intergenic |
| ATAAATGGAAATAACCTCGT+AGG | 0.618799 | 5_4:-57782258 | Msa0859450:CDS |
| ATATTTGAAAAGTCTTCCGA+AGG | 0.620652 | 5_4:-57783600 | Msa0859450:CDS |
| AAGTAAACACTACCCAACAT+TGG | 0.621139 | 5_4:+57784854 | None:intergenic |
| GGGTATTTCCTGTACAACTG+AGG | 0.624337 | 5_4:+57783062 | None:intergenic |
| ATTTCAATAAAATTGGATGG+TGG | 0.629003 | 5_4:-57783852 | Msa0859450:CDS |
| AAACCATGAATAATGGGCAA+GGG | 0.633824 | 5_4:+57781522 | None:intergenic |
| TTGGGATTGGAGAACCAGGA+AGG | 0.639874 | 5_4:-57783921 | Msa0859450:CDS |
| GATCTCAAACTTAAGGACTG+TGG | 0.659076 | 5_4:-57783891 | Msa0859450:CDS |
| TCTGAAATCTCCACAACCGG+AGG | 0.673824 | 5_4:+57783002 | None:intergenic |
| GCTAGCCATCTCTTTAGACG+AGG | 0.696866 | 5_4:-57783393 | Msa0859450:CDS |
| AAATAACAGAAGATAGCACA+AGG | 0.709739 | 5_4:+57781295 | None:intergenic |
| CCAATCTGATGGTACCTACG+AGG | 0.737067 | 5_4:+57782244 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTTCAATAAAAT+TGG | - | chr5_4:57782413-57782432 | Msa0859450:intron | 10.0% |
| !!! | TGTTATTTGTTAATTTTTTA+GGG | - | chr5_4:57784992-57785011 | Msa0859450:CDS | 10.0% |
| !! | AATAAAAAACACAAAAACAA+AGG | + | chr5_4:57781647-57781666 | None:intergenic | 15.0% |
| !!! | TGTTTTTGTGTTTTTTATTT+TGG | - | chr5_4:57781648-57781667 | Msa0859450:intron | 15.0% |
| !! | TTCATAAAAATGTAATGAAA+AGG | - | chr5_4:57782273-57782292 | Msa0859450:CDS | 15.0% |
| !! | TCATAAAAATGTAATGAAAA+GGG | - | chr5_4:57782274-57782293 | Msa0859450:CDS | 15.0% |
| !!! | AATTTTATTTACTATGTCAT+TGG | - | chr5_4:57783069-57783088 | Msa0859450:CDS | 15.0% |
| !! | AAAAACATACACATAAATTA+TGG | + | chr5_4:57783420-57783439 | None:intergenic | 15.0% |
| !! | TTTGATTATGATGAATTATA+TGG | - | chr5_4:57783500-57783519 | Msa0859450:CDS | 15.0% |
| !! | TTGATTATGATGAATTATAT+GGG | - | chr5_4:57783501-57783520 | Msa0859450:CDS | 15.0% |
| !!! | CTGTTATTTGTTAATTTTTT+AGG | - | chr5_4:57784991-57785010 | Msa0859450:CDS | 15.0% |
| !! | ACATAATCTATTTATGATTG+TGG | - | chr5_4:57781733-57781752 | Msa0859450:intron | 20.0% |
| !! | TAATTAAGTTTATTCTCTCA+AGG | + | chr5_4:57781765-57781784 | None:intergenic | 20.0% |
| !! | TAAAAAGATAGCTTATACAT+AGG | + | chr5_4:57781830-57781849 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGATAAGCA+GGG | - | chr5_4:57781844-57781863 | Msa0859450:intron | 20.0% |
| !!! | ATCATTAAATAAGTTGACAT+TGG | + | chr5_4:57782144-57782163 | None:intergenic | 20.0% |
| !! | GATATTTCAATAAAATTGGA+TGG | - | chr5_4:57782417-57782436 | Msa0859450:intron | 20.0% |
| !! | AAAACTTACATCATAATACA+AGG | + | chr5_4:57782926-57782945 | None:intergenic | 20.0% |
| !! | ATATATTCAGAGAATAAGAA+TGG | + | chr5_4:57783450-57783469 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | - | chr5_4:57783455-57783474 | Msa0859450:CDS | 20.0% |
| !! | TCATAATCAAAATAACATTG+AGG | + | chr5_4:57783491-57783510 | None:intergenic | 20.0% |
| !!! | AACATCTAATCTTTTAAACT+CGG | + | chr5_4:57783756-57783775 | None:intergenic | 20.0% |
| !! | AGTTTAAAAGATTAGATGTT+TGG | - | chr5_4:57783756-57783775 | Msa0859450:intron | 20.0% |
| !! | ACATAAATCATTATAAGTTC+AGG | - | chr5_4:57784191-57784210 | Msa0859450:intron | 20.0% |
| !! | TCATATTGATATTTAAACAC+AGG | + | chr5_4:57784238-57784257 | None:intergenic | 20.0% |
| !!! | CTTGATTTCTTTCTTTTTTT+TGG | + | chr5_4:57784946-57784965 | None:intergenic | 20.0% |
| !!! | TATTTTATACATCTAGATCT+AGG | + | chr5_4:57785038-57785057 | None:intergenic | 20.0% |
| !! | GTATGTTTTTCACGAAATTA+AGG | + | chr5_4:57781330-57781349 | None:intergenic | 25.0% |
| ! | GAAAAACATACTCATTCAAA+AGG | - | chr5_4:57781339-57781358 | Msa0859450:three_prime_UTR | 25.0% |
| ! | CAATTACCCAATATTGAAAA+GGG | - | chr5_4:57781385-57781404 | Msa0859450:three_prime_UTR | 25.0% |
| ! | CTTATGAGTATAGTAGTATT+TGG | - | chr5_4:57781560-57781579 | Msa0859450:CDS | 25.0% |
| ! | TTGTATGTATATGTGTAGAA+TGG | - | chr5_4:57781673-57781692 | Msa0859450:intron | 25.0% |
| ! | TCTATTTATGATTGTGGTTT+AGG | - | chr5_4:57781739-57781758 | Msa0859450:intron | 25.0% |
| !! | CTTTTTAACAAAAGATAAGC+AGG | - | chr5_4:57781843-57781862 | Msa0859450:intron | 25.0% |
| !!! | GATAAATTGAAAAGTGCTTA+TGG | - | chr5_4:57781928-57781947 | Msa0859450:intron | 25.0% |
| ! | TGTGACACATTTATTGATAT+TGG | - | chr5_4:57781972-57781991 | Msa0859450:intron | 25.0% |
| ! | AAGACGATTTAAAGATGATT+TGG | - | chr5_4:57782019-57782038 | Msa0859450:intron | 25.0% |
| !! | TAAATAAGTTGACATTGGTA+GGG | + | chr5_4:57782139-57782158 | None:intergenic | 25.0% |
| !! | TTAAATAAGTTGACATTGGT+AGG | + | chr5_4:57782140-57782159 | None:intergenic | 25.0% |
| !! | TTTTATTGCTGCACTAAATA+TGG | - | chr5_4:57782167-57782186 | Msa0859450:intron | 25.0% |
| ! | TGGATAATGTAACTTATAGA+TGG | - | chr5_4:57782187-57782206 | Msa0859450:CDS | 25.0% |
| !!! | AATTTGATAAGTGCTGATTT+TGG | - | chr5_4:57782297-57782316 | Msa0859450:intron | 25.0% |
| ! | ATGGAAGTTGAACTTAAATT+GGG | - | chr5_4:57782333-57782352 | Msa0859450:intron | 25.0% |
| ! | ATATTTGGATCTCAAACTTA+AGG | - | chr5_4:57782374-57782393 | Msa0859450:intron | 25.0% |
| ! | ATTTCAATAAAATTGGATGG+TGG | - | chr5_4:57782420-57782439 | Msa0859450:intron | 25.0% |
| !!! | AGTTTTGATTCATATCTAAC+AGG | - | chr5_4:57782560-57782579 | Msa0859450:intron | 25.0% |
| ! | GATGAATTTGTGCATAAAAT+TGG | + | chr5_4:57782853-57782872 | None:intergenic | 25.0% |
| !!! | ATGATGTAAGTTTTGATGTT+TGG | - | chr5_4:57782932-57782951 | Msa0859450:intron | 25.0% |
| ! | TATTTACTATGTCATTGGAT+TGG | - | chr5_4:57783074-57783093 | Msa0859450:CDS | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | + | chr5_4:57783233-57783252 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | + | chr5_4:57783234-57783253 | None:intergenic | 25.0% |
| ! | TTATGATGAATTATATGGGT+TGG | - | chr5_4:57783505-57783524 | Msa0859450:CDS | 25.0% |
| ! | AGAAATGACAACTTATTGTA+AGG | + | chr5_4:57783928-57783947 | None:intergenic | 25.0% |
| ! | AAATTTCTTTATGCTTTCAG+TGG | - | chr5_4:57784287-57784306 | Msa0859450:intron | 25.0% |
| ! | AATAAGTTAAAAACAGCTTC+TGG | + | chr5_4:57784428-57784447 | None:intergenic | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | + | chr5_4:57784602-57784621 | None:intergenic | 25.0% |
| !!! | TGTTAATTTTTTAGGGAATG+AGG | - | chr5_4:57784999-57785018 | Msa0859450:CDS | 25.0% |
| !!! | GTTAATTTTTTAGGGAATGA+GGG | - | chr5_4:57785000-57785019 | Msa0859450:CDS | 25.0% |
| !!! | TTAATTTTTTAGGGAATGAG+GGG | - | chr5_4:57785001-57785020 | Msa0859450:CDS | 25.0% |
| ! | GATCTAGATGTATAAAATAC+AGG | - | chr5_4:57785039-57785058 | Msa0859450:CDS | 25.0% |
| !!! | AAGGTTGCATTTTGATTTGT+GGG | + | chr5_4:57781198-57781217 | None:intergenic | 30.0% |
| !!! | AAAGGTTGCATTTTGATTTG+TGG | + | chr5_4:57781199-57781218 | None:intergenic | 30.0% |
| !! | GATATGAAAGCTTGGTTTTT+GGG | + | chr5_4:57781286-57781305 | None:intergenic | 30.0% |
| TTAATAGGGATATGAAAGCT+TGG | + | chr5_4:57781294-57781313 | None:intergenic | 30.0% | |
| ! | CCTTTTCAATATTGGGTAAT+TGG | + | chr5_4:57781387-57781406 | None:intergenic | 30.0% |
| CCAATTACCCAATATTGAAA+AGG | - | chr5_4:57781384-57781403 | Msa0859450:three_prime_UTR | 30.0% | |
| ! | CTTGTACCCTTTTCAATATT+GGG | + | chr5_4:57781394-57781413 | None:intergenic | 30.0% |
| ! | TCTTGTACCCTTTTCAATAT+TGG | + | chr5_4:57781395-57781414 | None:intergenic | 30.0% |
| ! | GGTTAGTTGTAATTTGAGTT+TGG | - | chr5_4:57781531-57781550 | Msa0859450:CDS | 30.0% |
| ! | GTTGTAATTTGAGTTTGGAT+TGG | - | chr5_4:57781536-57781555 | Msa0859450:CDS | 30.0% |
| GAGTATAGTAGTATTTGGTT+TGG | - | chr5_4:57781565-57781584 | Msa0859450:CDS | 30.0% | |
| ! | TTTTCGTATAAGCTATAAGC+TGG | - | chr5_4:57781875-57781894 | Msa0859450:intron | 30.0% |
| !! | CTTCATCACTGATTTAAGAT+CGG | + | chr5_4:57782002-57782021 | None:intergenic | 30.0% |
| ATACACACATCAGTTAATCT+CGG | + | chr5_4:57782083-57782102 | None:intergenic | 30.0% | |
| !!! | CTGCATGTTTTTTTAGATAC+CGG | - | chr5_4:57782103-57782122 | Msa0859450:intron | 30.0% |
| !!! | TGCATGTTTTTTTAGATACC+GGG | - | chr5_4:57782104-57782123 | Msa0859450:intron | 30.0% |
| CATGGAAGTTGAACTTAAAT+TGG | - | chr5_4:57782332-57782351 | Msa0859450:intron | 30.0% | |
| AGTTGAACTTAAATTGGGAT+TGG | - | chr5_4:57782338-57782357 | Msa0859450:intron | 30.0% | |
| AAATGAGCTAGAATCTGATA+TGG | + | chr5_4:57782482-57782501 | None:intergenic | 30.0% | |
| !!! | TTTCATGTGTCACTTTTATG+TGG | - | chr5_4:57782506-57782525 | Msa0859450:intron | 30.0% |
| ! | TGTGGCAGAAAACAATTTTA+CGG | - | chr5_4:57782524-57782543 | Msa0859450:intron | 30.0% |
| ATATTTGAAAAGTCTTCCGA+AGG | - | chr5_4:57782672-57782691 | Msa0859450:intron | 30.0% | |
| GAAATTTATGCATTGGATTG+TGG | - | chr5_4:57783134-57783153 | Msa0859450:CDS | 30.0% | |
| TTATTATTCCTCAGTTGTAC+AGG | - | chr5_4:57783202-57783221 | Msa0859450:intron | 30.0% | |
| TACAAGTTGTTGTCAATTAC+CGG | - | chr5_4:57783640-57783659 | Msa0859450:CDS | 30.0% | |
| TATGCTATGCTACAATACTA+TGG | + | chr5_4:57783677-57783696 | None:intergenic | 30.0% | |
| ! | TCAGGTTTGGTCAAAATAAA+TGG | - | chr5_4:57783999-57784018 | Msa0859450:intron | 30.0% |
| ATAAATGGAAATAACCTCGT+AGG | - | chr5_4:57784014-57784033 | Msa0859450:intron | 30.0% | |
| !! | ACTTTGGAATGTCATTGAAA+TGG | - | chr5_4:57784054-57784073 | Msa0859450:intron | 30.0% |
| AACATAAACCTACCTGAATA+AGG | + | chr5_4:57784106-57784125 | None:intergenic | 30.0% | |
| ! | TGTGAGATTGAGAGATTTTA+TGG | - | chr5_4:57784384-57784403 | Msa0859450:intron | 30.0% |
| TTAAGATGTCTCATTGATGA+AGG | - | chr5_4:57784633-57784652 | Msa0859450:intron | 30.0% | |
| TAAGATGTCTCATTGATGAA+GGG | - | chr5_4:57784634-57784653 | Msa0859450:intron | 30.0% | |
| TCAATAATTGTCCACATAAC+TGG | + | chr5_4:57784684-57784703 | None:intergenic | 30.0% | |
| AAGGTGAAACCATGAATAAT+GGG | + | chr5_4:57784759-57784778 | None:intergenic | 30.0% | |
| TAAGGTGAAACCATGAATAA+TGG | + | chr5_4:57784760-57784779 | None:intergenic | 30.0% | |
| AAATAACAGAAGATAGCACA+AGG | + | chr5_4:57784980-57784999 | None:intergenic | 30.0% | |
| TCCAATTACATGAGAATTCA+TGG | + | chr5_4:57785086-57785105 | None:intergenic | 30.0% | |
| !! | GGATATGAAAGCTTGGTTTT+TGG | + | chr5_4:57781287-57781306 | None:intergenic | 35.0% |
| TCCCTATTAATCACCCAAAA+CGG | - | chr5_4:57781304-57781323 | Msa0859450:three_prime_UTR | 35.0% | |
| GGTACAAGAATTCCAATGTT+GGG | - | chr5_4:57781406-57781425 | Msa0859450:exon | 35.0% | |
| AAGTAAACACTACCCAACAT+TGG | + | chr5_4:57781421-57781440 | None:intergenic | 35.0% | |
| GATTCTTCTATTGTTAAGCC+TGG | - | chr5_4:57781478-57781497 | Msa0859450:CDS | 35.0% | |
| ! | GAATTGAGATTGTTGCTTCT+GGG | - | chr5_4:57781509-57781528 | Msa0859450:CDS | 35.0% |
| ! | AATTGAGATTGTTGCTTCTG+GGG | - | chr5_4:57781510-57781529 | Msa0859450:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | - | chr5_4:57781576-57781595 | Msa0859450:CDS | 35.0% |
| !! | ATCACTGATTTAAGATCGGA+CGG | + | chr5_4:57781998-57782017 | None:intergenic | 35.0% |
| !!! | TTTTTTAGATACCGGGAATC+TGG | - | chr5_4:57782111-57782130 | Msa0859450:intron | 35.0% |
| !!! | GATAAGTGCTGATTTTGGAA+AGG | - | chr5_4:57782302-57782321 | Msa0859450:intron | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | - | chr5_4:57782580-57782599 | Msa0859450:intron | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | - | chr5_4:57782581-57782600 | Msa0859450:intron | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | - | chr5_4:57782589-57782608 | Msa0859450:intron | 35.0% |
| AATGCTATCACCAAGAATCT+TGG | - | chr5_4:57782625-57782644 | Msa0859450:intron | 35.0% | |
| !!! | TTGGAAGTTTTGAGTTCTTG+TGG | + | chr5_4:57782834-57782853 | None:intergenic | 35.0% |
| GAGAAATTGTTTCGATGTTC+AGG | - | chr5_4:57783110-57783129 | Msa0859450:CDS | 35.0% | |
| TTCAGGCGAAATTTATGCAT+TGG | - | chr5_4:57783127-57783146 | Msa0859450:CDS | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | + | chr5_4:57783168-57783187 | None:intergenic | 35.0% | |
| TATATCTTTGTCTTCTCCTC+CGG | - | chr5_4:57783254-57783273 | Msa0859450:intron | 35.0% | |
| TCAGAGAATAAGAATGGTGA+AGG | + | chr5_4:57783444-57783463 | None:intergenic | 35.0% | |
| !! | ATGAATTATATGGGTTGGTG+TGG | - | chr5_4:57783510-57783529 | Msa0859450:CDS | 35.0% |
| TGTACTTGACAACAATGTCT+TGG | + | chr5_4:57783555-57783574 | None:intergenic | 35.0% | |
| !!! | CATTTTGACTAAACAGTGTC+TGG | + | chr5_4:57783855-57783874 | None:intergenic | 35.0% |
| ATTGTAAGGTGTACAAAGAC+AGG | + | chr5_4:57783914-57783933 | None:intergenic | 35.0% | |
| AATCATCTGTGGAAACAAGA+TGG | + | chr5_4:57783973-57783992 | None:intergenic | 35.0% | |
| TCATTGAAATGGAGCAACAT+TGG | - | chr5_4:57784065-57784084 | Msa0859450:intron | 35.0% | |
| TCTACGAATGTTCCTTATTC+AGG | - | chr5_4:57784091-57784110 | Msa0859450:intron | 35.0% | |
| TTGTAAATTCTAGCGCACAT+AGG | - | chr5_4:57784314-57784333 | Msa0859450:intron | 35.0% | |
| TGTAAATTCTAGCGCACATA+GGG | - | chr5_4:57784315-57784334 | Msa0859450:intron | 35.0% | |
| CACATAGGGTATGTTTGAAT+TGG | - | chr5_4:57784329-57784348 | Msa0859450:intron | 35.0% | |
| ! | CTTATTTCCATTAGCTCTCT+AGG | - | chr5_4:57784442-57784461 | Msa0859450:intron | 35.0% |
| CTTAGATGTGCATTTGCATA+TGG | + | chr5_4:57784720-57784739 | None:intergenic | 35.0% | |
| GCAAATGCACATCTAAGTAA+AGG | - | chr5_4:57784723-57784742 | Msa0859450:CDS | 35.0% | |
| !! | AAACCATGAATAATGGGCAA+GGG | + | chr5_4:57784753-57784772 | None:intergenic | 35.0% |
| GCCATGAATTCTCATGTAAT+TGG | - | chr5_4:57785082-57785101 | Msa0859450:exon | 35.0% | |
| GTTGTGGAAATTGAGGTTGT+TGG | + | chr5_4:57781176-57781195 | None:intergenic | 40.0% | |
| ! | TTTGTGGGTTGTGGAAATTG+AGG | + | chr5_4:57781183-57781202 | None:intergenic | 40.0% |
| !!! | GCATTTTGATTTGTGGGTTG+TGG | + | chr5_4:57781192-57781211 | None:intergenic | 40.0% |
| AGTAGGAGAAGGAAGAAGAA+AGG | + | chr5_4:57781217-57781236 | None:intergenic | 40.0% | |
| AAGAGGTGAATAGTAGGAGA+AGG | + | chr5_4:57781228-57781247 | None:intergenic | 40.0% | |
| TGAAGGAAGAGGTGAATAGT+AGG | + | chr5_4:57781234-57781253 | None:intergenic | 40.0% | |
| TTGTGATTGCGTGTGAATGA+AGG | + | chr5_4:57781251-57781270 | None:intergenic | 40.0% | |
| !!! | AAAGCTTGGTTTTTGGGTTG+AGG | + | chr5_4:57781280-57781299 | None:intergenic | 40.0% |
| !! | GCCGTTTTGGGTGATTAATA+GGG | + | chr5_4:57781308-57781327 | None:intergenic | 40.0% |
| !! | CACGAAATTAAGGCCGTTTT+GGG | + | chr5_4:57781320-57781339 | None:intergenic | 40.0% |
| ! | TCACGAAATTAAGGCCGTTT+TGG | + | chr5_4:57781321-57781340 | None:intergenic | 40.0% |
| GGGTAATTGGAGTGAAACTA+TGG | + | chr5_4:57781374-57781393 | None:intergenic | 40.0% | |
| GGGTACAAGAATTCCAATGT+TGG | - | chr5_4:57781405-57781424 | Msa0859450:exon | 40.0% | |
| ! | GGAATTGAGATTGTTGCTTC+TGG | - | chr5_4:57781508-57781527 | Msa0859450:CDS | 40.0% |
| CCTTGATCAGAAACCTTAAC+AGG | + | chr5_4:57781592-57781611 | None:intergenic | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | - | chr5_4:57781589-57781608 | Msa0859450:CDS | 40.0% | |
| AAGCTATCATACAGAACTCG+TGG | - | chr5_4:57781904-57781923 | Msa0859450:intron | 40.0% | |
| AGCCGAGCAATATCAATCAA+TGG | - | chr5_4:57782057-57782076 | Msa0859450:intron | 40.0% | |
| ! | GGCCATTGATTGATATTGCT+CGG | + | chr5_4:57782062-57782081 | None:intergenic | 40.0% |
| !! | GCTGATTTTGGAAAGGTTGA+AGG | - | chr5_4:57782309-57782328 | Msa0859450:intron | 40.0% |
| !! | TTTTGGAAAGGTTGAAGGCA+TGG | - | chr5_4:57782314-57782333 | Msa0859450:intron | 40.0% |
| TAAATTGGGATTGGAGAACC+AGG | - | chr5_4:57782347-57782366 | Msa0859450:intron | 40.0% | |
| TGAGATCCAAATATCCTTCC+TGG | + | chr5_4:57782368-57782387 | None:intergenic | 40.0% | |
| GATCTCAAACTTAAGGACTG+TGG | - | chr5_4:57782381-57782400 | Msa0859450:intron | 40.0% | |
| !! | GTGCATCTTGGCTTTATCAA+GGG | - | chr5_4:57782442-57782461 | Msa0859450:intron | 40.0% |
| !! | TCTTGGCTTTATCAAGGGTA+TGG | - | chr5_4:57782447-57782466 | Msa0859450:intron | 40.0% |
| ATCACCAAGAATCTTGGAGA+AGG | - | chr5_4:57782631-57782650 | Msa0859450:intron | 40.0% | |
| AATGCCTTCTCCAAGATTCT+TGG | + | chr5_4:57782638-57782657 | None:intergenic | 40.0% | |
| !! | ATCTTGGAGAAGGCATTACA+AGG | - | chr5_4:57782641-57782660 | Msa0859450:intron | 40.0% |
| TTTGAAAAGTCTTCCGAAGG+AGG | - | chr5_4:57782675-57782694 | Msa0859450:intron | 40.0% | |
| ! | TCGATTGGGTTTGAAACGAA+TGG | - | chr5_4:57782763-57782782 | Msa0859450:intron | 40.0% |
| ! | CGATTGGGTTTGAAACGAAT+GGG | - | chr5_4:57782764-57782783 | Msa0859450:intron | 40.0% |
| CATCAAACAGACAAGAACTC+TGG | + | chr5_4:57783000-57783019 | None:intergenic | 40.0% | |
| GTTCTTGTCTGTTTGATGTC+TGG | - | chr5_4:57783002-57783021 | Msa0859450:CDS | 40.0% | |
| TGTCTGTTTGATGTCTGGTT+CGG | - | chr5_4:57783007-57783026 | Msa0859450:CDS | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | - | chr5_4:57783171-57783190 | Msa0859450:intron | 40.0% | |
| ! | TGATCTGAAATCTCCACAAC+CGG | + | chr5_4:57783276-57783295 | None:intergenic | 40.0% |
| GAGATTTCAGATCAGAAAGC+AGG | - | chr5_4:57783282-57783301 | Msa0859450:intron | 40.0% | |
| ! | CCACTATTTTCTGCAATCTG+CGG | - | chr5_4:57783707-57783726 | Msa0859450:intron | 40.0% |
| ! | GATGATTCAAGCTTCAGGTT+TGG | - | chr5_4:57783986-57784005 | Msa0859450:intron | 40.0% |
| CGAATGTTCCTTATTCAGGT+AGG | - | chr5_4:57784095-57784114 | Msa0859450:intron | 40.0% | |
| AAGCTATCCTAGAGAGCTAA+TGG | + | chr5_4:57784452-57784471 | None:intergenic | 40.0% | |
| TTACCCTTGCCCATTATTCA+TGG | - | chr5_4:57784747-57784766 | Msa0859450:CDS | 40.0% | |
| !! | GAAACCATGAATAATGGGCA+AGG | + | chr5_4:57784754-57784773 | None:intergenic | 40.0% |
| GATTATCTCTGCGTCTTGTA+AGG | + | chr5_4:57784778-57784797 | None:intergenic | 40.0% | |
| ACATCTAGATCTAGGCATGA+TGG | + | chr5_4:57785030-57785049 | None:intergenic | 40.0% | |
| !! | TGAGGTTGTTGGTGGTTCAT+TGG | + | chr5_4:57781165-57781184 | None:intergenic | 45.0% |
| GTGGAAATTGAGGTTGTTGG+TGG | + | chr5_4:57781173-57781192 | None:intergenic | 45.0% | |
| TTGCGTGTGAATGAAGGAAG+AGG | + | chr5_4:57781245-57781264 | None:intergenic | 45.0% | |
| !! | GGCCGTTTTGGGTGATTAAT+AGG | + | chr5_4:57781309-57781328 | None:intergenic | 45.0% |
| ATTGTTAAGCCTGGTGAGAG+TGG | - | chr5_4:57781487-57781506 | Msa0859450:CDS | 45.0% | |
| ATCTCAATTCCACTCTCACC+AGG | + | chr5_4:57781499-57781518 | None:intergenic | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | - | chr5_4:57781606-57781625 | Msa0859450:intron | 45.0% | |
| GGAGAACCAGGAAGGATATT+TGG | - | chr5_4:57782359-57782378 | Msa0859450:intron | 45.0% | |
| ! | AATTGGATGGTGGTGCATCT+TGG | - | chr5_4:57782430-57782449 | Msa0859450:intron | 45.0% |
| !! | GGTGCATCTTGGCTTTATCA+AGG | - | chr5_4:57782441-57782460 | Msa0859450:intron | 45.0% |
| AACGAAGAGTGATCATCGAC+CGG | + | chr5_4:57782703-57782722 | None:intergenic | 45.0% | |
| TTACTGAGTGAGTCGTCGAT+TGG | - | chr5_4:57782748-57782767 | Msa0859450:intron | 45.0% | |
| ! | TACTGAGTGAGTCGTCGATT+GGG | - | chr5_4:57782749-57782768 | Msa0859450:intron | 45.0% |
| GCAGAGGTTAGGAATAGGTA+GGG | + | chr5_4:57782812-57782831 | None:intergenic | 45.0% | |
| TTGTGGCAGAGGTTAGGAAT+AGG | + | chr5_4:57782817-57782836 | None:intergenic | 45.0% | |
| !!! | GTTTTGAGTTCTTGTGGCAG+AGG | + | chr5_4:57782828-57782847 | None:intergenic | 45.0% |
| AACAGCCTCGTCTAAAGAGA+TGG | + | chr5_4:57782887-57782906 | None:intergenic | 45.0% | |
| CAGACAAGAACTCTGGATCA+TGG | + | chr5_4:57782993-57783012 | None:intergenic | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | - | chr5_4:57783175-57783194 | Msa0859450:intron | 45.0% | |
| GGGTATTTCCTGTACAACTG+AGG | + | chr5_4:57783213-57783232 | None:intergenic | 45.0% | |
| ACCAGTAGCATGCATCTCAT+TGG | - | chr5_4:57783359-57783378 | Msa0859450:CDS | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | + | chr5_4:57783363-57783382 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | - | chr5_4:57783363-57783382 | Msa0859450:CDS | 45.0% | |
| TACTATGGCGCTACAATAGC+CGG | + | chr5_4:57783662-57783681 | None:intergenic | 45.0% | |
| CCGCAGATTGCAGAAAATAG+TGG | + | chr5_4:57783710-57783729 | None:intergenic | 45.0% | |
| CCTGAAGCTTGAATCATCTG+TGG | + | chr5_4:57783984-57784003 | None:intergenic | 45.0% | |
| CCACAGATGATTCAAGCTTC+AGG | - | chr5_4:57783981-57784000 | Msa0859450:intron | 45.0% | |
| CTCGTAGGTACCATCAGATT+GGG | - | chr5_4:57784029-57784048 | Msa0859450:intron | 45.0% | |
| ACCATCAGATTGGGTGACTT+TGG | - | chr5_4:57784038-57784057 | Msa0859450:intron | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | + | chr5_4:57784042-57784061 | None:intergenic | 45.0% | |
| ! | TTTTCCTGCAGCCAGTTATG+TGG | - | chr5_4:57784670-57784689 | Msa0859450:CDS | 45.0% |
| TTGGTAGGGATCCAGATTCC+CGG | + | chr5_4:57782125-57782144 | None:intergenic | 50.0% | |
| TTGGGATTGGAGAACCAGGA+AGG | - | chr5_4:57782351-57782370 | Msa0859450:intron | 50.0% | |
| AAGTCTTCCGAAGGAGGTTC+CGG | - | chr5_4:57782681-57782700 | Msa0859450:intron | 50.0% | |
| GGCAGAGGTTAGGAATAGGT+AGG | + | chr5_4:57782813-57782832 | None:intergenic | 50.0% | |
| GAGTTCTTGTGGCAGAGGTT+AGG | + | chr5_4:57782823-57782842 | None:intergenic | 50.0% | |
| GCTAGCCATCTCTTTAGACG+AGG | - | chr5_4:57782879-57782898 | Msa0859450:intron | 50.0% | |
| TTTGTCTTCTCCTCCGGTTG+TGG | - | chr5_4:57783260-57783279 | Msa0859450:intron | 50.0% | |
| ! | TCTGAAATCTCCACAACCGG+AGG | + | chr5_4:57783273-57783292 | None:intergenic | 50.0% |
| ACTATAGCGCTACAACGCAG+CGG | - | chr5_4:57783576-57783595 | Msa0859450:CDS | 50.0% | |
| CCAATCTGATGGTACCTACG+AGG | + | chr5_4:57784031-57784050 | None:intergenic | 50.0% | |
| CCTCGTAGGTACCATCAGAT+TGG | - | chr5_4:57784028-57784047 | Msa0859450:intron | 50.0% | |
| TTGTCCACATAACTGGCTGC+AGG | + | chr5_4:57784677-57784696 | None:intergenic | 50.0% | |
| TCATCGACCGGAACCTCCTT+CGG | + | chr5_4:57782691-57782710 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57781156 | 57785138 | 57781156 | ID=Msa0859450;Name=Msa0859450 |
| chr5_4 | mRNA | 57781156 | 57785138 | 57781156 | ID=Msa0859450-mRNA-1;Parent=Msa0859450;Name=Msa0859450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=52|0.8|0.83|1|1|1|6|263|485 |
| chr5_4 | exon | 57781156 | 57781613 | 57781156 | ID=Msa0859450-mRNA-1:exon:17610;Parent=Msa0859450-mRNA-1 |
| chr5_4 | exon | 57782182 | 57782307 | 57782182 | ID=Msa0859450-mRNA-1:exon:17609;Parent=Msa0859450-mRNA-1 |
| chr5_4 | exon | 57782941 | 57783162 | 57782941 | ID=Msa0859450-mRNA-1:exon:17608;Parent=Msa0859450-mRNA-1 |
| chr5_4 | exon | 57783358 | 57783712 | 57783358 | ID=Msa0859450-mRNA-1:exon:17607;Parent=Msa0859450-mRNA-1 |
| chr5_4 | exon | 57783831 | 57783970 | 57783831 | ID=Msa0859450-mRNA-1:exon:17606;Parent=Msa0859450-mRNA-1 |
| chr5_4 | exon | 57784667 | 57785138 | 57784667 | ID=Msa0859450-mRNA-1:exon:17605;Parent=Msa0859450-mRNA-1 |
| chr5_4 | five_prime_UTR | 57785087 | 57785138 | 57785087 | ID=Msa0859450-mRNA-1:five_prime_utr;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57784667 | 57785086 | 57784667 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57783831 | 57783970 | 57783831 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57783358 | 57783712 | 57783358 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57782941 | 57783162 | 57782941 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57782182 | 57782307 | 57782182 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | CDS | 57781419 | 57781613 | 57781419 | ID=Msa0859450-mRNA-1:cds;Parent=Msa0859450-mRNA-1 |
| chr5_4 | three_prime_UTR | 57781156 | 57781418 | 57781156 | ID=Msa0859450-mRNA-1:three_prime_utr;Parent=Msa0859450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
