AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832360 MtrunA17_Chr5g0393541 94.700 283 6 3 2 279 1 279 0.0 510
Msa0832360 MtrunA17_Chr5g0393481 68.929 280 41 5 4 277 7 246 5.28e-97 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832360 AT4G34150.1 49.818 275 104 7 1 274 1 242 1.04e-61 195

Find 125 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACGAAGGCCTTCAATT+AGG 0.223666 5_4:-5391244 None:intergenic
CTCACGAAGGCCTTCAATTA+GGG 0.298122 5_4:-5391243 None:intergenic
ATGAACTTCTCTTGAAATAC+AGG 0.329350 5_4:-5391215 None:intergenic
GAGATATAAGAAACAAAATC+TGG 0.335243 5_4:-5392470 None:intergenic
AAGAATTACTTACCAGCGTT+TGG 0.337334 5_4:-5392274 None:intergenic
GTTTCTTATATCTCTACATT+AGG 0.348243 5_4:+5392479 Msa0832360:three_prime_UTR
ATATGATGGGACTGCTGTAT+AGG 0.351177 5_4:-5391915 None:intergenic
GTATTCACCCATCCATGTTA+TGG 0.353006 5_4:+5392749 Msa0832360:three_prime_UTR
TTCTCTGTGTATGACCAAAT+TGG 0.355431 5_4:-5392707 None:intergenic
GGGTAAGGTGGTGGTGGTTG+TGG 0.356727 5_4:-5392013 None:intergenic
TGGCCACTTCAAACTAAAAC+TGG 0.363854 5_4:+5391467 Msa0832360:CDS
GGACTGTTTAGTATCCAATT+TGG 0.365334 5_4:+5392693 Msa0832360:three_prime_UTR
GGCCAGCCTCTCGAGGTTAC+TGG 0.386852 5_4:+5390875 Msa0832360:CDS
GGCGGATAAGAGTGGGGAGG+AGG 0.387349 5_4:-5392202 None:intergenic
GGACTGCTGTATAGGGAGTA+TGG 0.403544 5_4:-5391907 None:intergenic
GTGAGATCAATGTTGTCGTT+TGG 0.408755 5_4:+5391261 Msa0832360:CDS
TATGATGGGACTGCTGTATA+GGG 0.411289 5_4:-5391914 None:intergenic
GTAGCATATGTGTGTCAATA+TGG 0.415498 5_4:-5392391 None:intergenic
TTCATACTTCCCCTAATTGA+AGG 0.420730 5_4:+5391233 Msa0832360:CDS
GATGATGAGGGTGGTGGATA+GGG 0.427578 5_4:-5392112 None:intergenic
ATTCACTTTGGCATTGGCAC+TGG 0.431726 5_4:-5391760 None:intergenic
TTTGGCATTGGCACTGGCAT+TGG 0.438190 5_4:-5391754 None:intergenic
CTGGTGATTCACTTTGGCAT+TGG 0.439416 5_4:-5391766 None:intergenic
GCATGTTCTTGTTCGGAACT+TGG 0.446926 5_4:-5391072 None:intergenic
TGTGGGTAGTAGGAAGGAAC+AGG 0.447068 5_4:-5391941 None:intergenic
TTCACGATGATGATGATGTC+TGG 0.448767 5_4:+5390845 Msa0832360:exon
CGAAATTGAAAGACACTGAA+TGG 0.450034 5_4:+5391006 Msa0832360:CDS
GTGTGGTTGTTGTGGGTAGT+AGG 0.452219 5_4:-5391951 None:intergenic
AACCAGTGCATGTTCTTGTT+CGG 0.457517 5_4:-5391079 None:intergenic
TGATGATGAGGGTGGTGGAT+AGG 0.463785 5_4:-5392113 None:intergenic
GATGACACTGATTGAGGGTA+TGG 0.470349 5_4:-5392088 None:intergenic
AATTAGAGTGTGGTTGTTGT+GGG 0.481190 5_4:-5391958 None:intergenic
TACCAGTAACCTCGAGAGGC+TGG 0.487326 5_4:-5390877 None:intergenic
CTGAAGATGGCGGATAAGAG+TGG 0.491172 5_4:-5392210 None:intergenic
TAATTAGAGTGTGGTTGTTG+TGG 0.492816 5_4:-5391959 None:intergenic
ATAACTAAGATGTGGATTAG+TGG 0.493686 5_4:+5392607 Msa0832360:three_prime_UTR
TATGGATATGTTGAGGATGG+TGG 0.494303 5_4:-5392070 None:intergenic
ACAAAAGCACGGTGGTTCCT+TGG 0.495307 5_4:-5392422 None:intergenic
GAAGGAACAGGATTATATGA+TGG 0.495410 5_4:-5391929 None:intergenic
TGGGGAGGAGGGTACGGTGA+TGG 0.496971 5_4:-5392190 None:intergenic
CCTGCAGGTGGAGGGTATGA+TGG 0.497690 5_4:-5392244 None:intergenic
TAAGAGTGGGGAGGAGGGTA+CGG 0.498100 5_4:-5392196 None:intergenic
GGAGTATGGCTTGAGGAGCC+TGG 0.500219 5_4:-5391893 None:intergenic
TAAGCAACAGCAGGTGTTGT+TGG 0.507242 5_4:-5391989 None:intergenic
TAGGGAGATGACACTGATTG+AGG 0.507262 5_4:-5392094 None:intergenic
CACTCACTCCATAACATGGA+TGG 0.509142 5_4:-5392757 None:intergenic
TAGGGAGATGGCACTGAAGG+AGG 0.510794 5_4:-5392145 None:intergenic
TACACAGAGAATGACAAACT+TGG 0.514496 5_4:+5392719 Msa0832360:three_prime_UTR
GATGGCACTGAAGGAGGGTA+TGG 0.515857 5_4:-5392139 None:intergenic
GGTTACCTGGTGATTCACTT+TGG 0.517974 5_4:-5391772 None:intergenic
GGAGGATAACCTGCAGGTGG+AGG 0.519441 5_4:-5392253 None:intergenic
GTGTGTCAATATGGCGGTGG+AGG 0.520887 5_4:-5392382 None:intergenic
GATGATGAAGTTGGTGGATA+GGG 0.524032 5_4:-5392163 None:intergenic
TTACACAAAGTTCTCTCTCA+AGG 0.524703 5_4:+5391428 Msa0832360:CDS
CCATCATACCCTCCACCTGC+AGG 0.528050 5_4:+5392244 Msa0832360:CDS
AATTACTTACCAGCGTTTGG+AGG 0.530399 5_4:-5392271 None:intergenic
AGGGAGATGACACTGATTGA+GGG 0.533173 5_4:-5392093 None:intergenic
TGATGATGAAGTTGGTGGAT+AGG 0.533342 5_4:-5392164 None:intergenic
GGATAGGGAGATGGCACTGA+AGG 0.535955 5_4:-5392148 None:intergenic
GGTGGAGGGTATGATGGTGG+TGG 0.541763 5_4:-5392238 None:intergenic
CACTTCAAACTAAAACTGGC+AGG 0.546655 5_4:+5391471 Msa0832360:CDS
GGTGATGATGATGAGGGTGG+TGG 0.549858 5_4:-5392118 None:intergenic
ATGATGATGTCTGGGATTCA+AGG 0.554951 5_4:+5390854 Msa0832360:CDS
TGAAGATGGCGGATAAGAGT+GGG 0.557216 5_4:-5392209 None:intergenic
GCAGCAGGGTAAGGTGGTGG+TGG 0.559747 5_4:-5392019 None:intergenic
GAGGATGGTGGATAAGAAGA+TGG 0.563718 5_4:-5392058 None:intergenic
TTATGTGAATGTGAAGCAGC+AGG 0.565883 5_4:-5392034 None:intergenic
AAGGAACAGGATTATATGAT+GGG 0.567570 5_4:-5391928 None:intergenic
AGGGTATGGTGATGATGATG+AGG 0.569188 5_4:-5392125 None:intergenic
GATGGTGATGATGATGAAGT+TGG 0.569892 5_4:-5392172 None:intergenic
GAATGTGAAGCAGCAGGGTA+AGG 0.573678 5_4:-5392028 None:intergenic
GGTGATGATGATGAAGTTGG+TGG 0.574618 5_4:-5392169 None:intergenic
GCAGGTGGAGGGTATGATGG+TGG 0.574871 5_4:-5392241 None:intergenic
AGATATAAGAAACAAAATCT+GGG 0.579766 5_4:-5392469 None:intergenic
GGTTGTTGTGGGTAGTAGGA+AGG 0.584669 5_4:-5391947 None:intergenic
TTCCGAACAAGAACATGCAC+TGG 0.585438 5_4:+5391077 Msa0832360:CDS
AGGGAGATGGCACTGAAGGA+GGG 0.585482 5_4:-5392144 None:intergenic
AGCGTATTCGATGCAAACGT+AGG 0.585596 5_4:-5391045 None:intergenic
ATTCTATTATAACTAAGATG+TGG 0.585900 5_4:+5392599 Msa0832360:three_prime_UTR
CATCCATGTTATGGAGTGAG+TGG 0.586586 5_4:+5392758 Msa0832360:three_prime_UTR
GGGTATGGATATGTTGAGGA+TGG 0.588607 5_4:-5392073 None:intergenic
GCGTTTGGAGGATAACCTGC+AGG 0.588898 5_4:-5392259 None:intergenic
GATAAAATCATCGAAGGTGA+CGG 0.590599 5_4:-5391294 None:intergenic
GAGGATAACCTGCAGGTGGA+GGG 0.591147 5_4:-5392252 None:intergenic
GCGGATAAGAGTGGGGAGGA+GGG 0.591531 5_4:-5392201 None:intergenic
TCACGATGATGATGATGTCT+GGG 0.592456 5_4:+5390846 Msa0832360:exon
TCACGAAGGCCTTCAATTAG+GGG 0.593261 5_4:-5391242 None:intergenic
TGTTCTTGTTCGGAACTTGG+TGG 0.595740 5_4:-5391069 None:intergenic
AGCCCACTCACTCCATAACA+TGG 0.598623 5_4:-5392761 None:intergenic
ACACAGAGAATGACAAACTT+GGG 0.599928 5_4:+5392720 Msa0832360:three_prime_UTR
CAACAGCAGGTGTTGTTGGA+TGG 0.604074 5_4:-5391985 None:intergenic
TGAACTTCTCTTGAAATACA+GGG 0.608951 5_4:-5391214 None:intergenic
GCGTATTCGATGCAAACGTA+GGG 0.609000 5_4:-5391044 None:intergenic
CAATGCCAAAGTGAATCACC+AGG 0.609446 5_4:+5391767 Msa0832360:CDS
ATATGCTACTTTCGCTACCA+AGG 0.613661 5_4:+5392405 Msa0832360:three_prime_UTR
ATCCATGTTATGGAGTGAGT+GGG 0.616219 5_4:+5392759 Msa0832360:three_prime_UTR
ACTCACTCCATAACATGGAT+GGG 0.618097 5_4:-5392756 None:intergenic
GATGGCGGATAAGAGTGGGG+AGG 0.623756 5_4:-5392205 None:intergenic
GAAGCAGCAGGGTAAGGTGG+TGG 0.624794 5_4:-5392022 None:intergenic
GCTAATATATTGCAGAAACC+AGG 0.627769 5_4:+5391875 Msa0832360:intron
GATTCAAGGCCAGCCTCTCG+AGG 0.627817 5_4:+5390868 Msa0832360:CDS
GAAGTTGGTGGATAGGGAGA+TGG 0.631529 5_4:-5392157 None:intergenic
GGGTATGGTGATGATGATGA+GGG 0.634043 5_4:-5392124 None:intergenic
ATCTTACCAGTAACCTCGAG+AGG 0.634279 5_4:-5390881 None:intergenic
GGTTGTGGATAAGCAACAGC+AGG 0.634892 5_4:-5391998 None:intergenic
GGTGGTGGATAAGCTGAAGA+TGG 0.637025 5_4:-5392223 None:intergenic
GGATGGTGATAATTAGAGTG+TGG 0.637190 5_4:-5391968 None:intergenic
TATGGTGATGATGATGAGGG+TGG 0.640824 5_4:-5392121 None:intergenic
TGTGTCAATATGGCGGTGGA+GGG 0.643568 5_4:-5392381 None:intergenic
ACTAATCATGTACAAAAGCA+CGG 0.644803 5_4:-5392433 None:intergenic
TATGTGAATGTGAAGCAGCA+GGG 0.647936 5_4:-5392033 None:intergenic
GCAGGTTATCCTCCAAACGC+TGG 0.651932 5_4:+5392262 Msa0832360:CDS
TGTGAAGCAGCAGGGTAAGG+TGG 0.654828 5_4:-5392025 None:intergenic
TTTGGAGGATAACCTGCAGG+TGG 0.658511 5_4:-5392256 None:intergenic
TGTCTGTCTGACAGACACGC+AGG 0.660568 5_4:+5391705 Msa0832360:intron
TATGTGTGTCAATATGGCGG+TGG 0.670842 5_4:-5392385 None:intergenic
GGTGCCGATAAAATCATCGA+AGG 0.673086 5_4:-5391300 None:intergenic
TTGAGGGTATGGATATGTTG+AGG 0.674935 5_4:-5392077 None:intergenic
TCTCAATTACATTATACATG+CGG 0.684133 5_4:+5392672 Msa0832360:three_prime_UTR
TGTATAGGGAGTATGGCTTG+AGG 0.692075 5_4:-5391900 None:intergenic
GAAGATGGCGGATAAGAGTG+GGG 0.705455 5_4:-5392208 None:intergenic
GGTGGATAAGCTGAAGATGG+CGG 0.729568 5_4:-5392220 None:intergenic
CGACAACATTGATCTCACGA+AGG 0.730875 5_4:-5391256 None:intergenic
GCATATGTGTGTCAATATGG+CGG 0.756030 5_4:-5392388 None:intergenic
AATCATGTACAAAAGCACGG+TGG 0.829684 5_4:-5392430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAAAAAAAAAAAAGT+AGG + chr5_4:5390701-5390720 Msa0832360:intron 10.0%
!! TACATATATATAATAACAAT+TGG + chr5_4:5391823-5391842 Msa0832360:intron 10.0%
!! AGTAAAAAAAAAAAAAAAGT+AGG + chr5_4:5390701-5390720 Msa0832360:intron 10.0%
!! TACATATATATAATAACAAT+TGG + chr5_4:5391823-5391842 Msa0832360:intron 10.0%
!! AAAAAAAAAAAAAAAGTAGG+TGG + chr5_4:5390704-5390723 Msa0832360:intron 15.0%
!! AAAAAAAAAAAAAAGTAGGT+GGG + chr5_4:5390705-5390724 Msa0832360:intron 15.0%
!! ATAAATAGTAATGAAAATGT+AGG - chr5_4:5391796-5391815 None:intergenic 15.0%
!!! ACTATCTATCATTATTTTTT+TGG + chr5_4:5392563-5392582 Msa0832360:three_prime_UTR 15.0%
!!! CTATCTATCATTATTTTTTT+GGG + chr5_4:5392564-5392583 Msa0832360:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAAAGTAGG+TGG + chr5_4:5390704-5390723 Msa0832360:intron 15.0%
!! AAAAAAAAAAAAAAGTAGGT+GGG + chr5_4:5390705-5390724 Msa0832360:intron 15.0%
!! ATAAATAGTAATGAAAATGT+AGG - chr5_4:5391796-5391815 None:intergenic 15.0%
!!! ACTATCTATCATTATTTTTT+TGG + chr5_4:5392563-5392582 Msa0832360:three_prime_UTR 15.0%
!!! CTATCTATCATTATTTTTTT+GGG + chr5_4:5392564-5392583 Msa0832360:three_prime_UTR 15.0%
!!! AGCTATGCTTTAAATAATTT+AGG + chr5_4:5390622-5390641 Msa0832360:intron 20.0%
!!! TATATTCTCTGTCTTATTTT+AGG + chr5_4:5391399-5391418 Msa0832360:intron 20.0%
!!! ATATTCTCTGTCTTATTTTA+GGG + chr5_4:5391400-5391419 Msa0832360:intron 20.0%
!! AGATATAAGAAACAAAATCT+GGG - chr5_4:5392472-5392491 None:intergenic 20.0%
!! ATTCTATTATAACTAAGATG+TGG + chr5_4:5392599-5392618 Msa0832360:three_prime_UTR 20.0%
!!! AGCTATGCTTTAAATAATTT+AGG + chr5_4:5390622-5390641 Msa0832360:intron 20.0%
!!! TATATTCTCTGTCTTATTTT+AGG + chr5_4:5391399-5391418 Msa0832360:intron 20.0%
!!! ATATTCTCTGTCTTATTTTA+GGG + chr5_4:5391400-5391419 Msa0832360:intron 20.0%
!! AGATATAAGAAACAAAATCT+GGG - chr5_4:5392472-5392491 None:intergenic 20.0%
!! ATTCTATTATAACTAAGATG+TGG + chr5_4:5392599-5392618 Msa0832360:three_prime_UTR 20.0%
! AACTTTAATGTGAAACGATT+TGG + chr5_4:5390596-5390615 Msa0832360:intron 25.0%
!!! GTTGATTTTAATCTTTGACT+TGG + chr5_4:5390911-5390930 Msa0832360:intron 25.0%
! AAACGACTACAATAAATAAC+AGG - chr5_4:5390980-5390999 None:intergenic 25.0%
!! TGAATTGAATAGTTACTTTC+CGG - chr5_4:5391324-5391343 None:intergenic 25.0%
! TCTCATCTATAATTTCGATA+TGG - chr5_4:5391523-5391542 None:intergenic 25.0%
! TGATTCTTAATAAGTGTGTT+TGG + chr5_4:5391849-5391868 Msa0832360:intron 25.0%
! GATTCTTAATAAGTGTGTTT+GGG + chr5_4:5391850-5391869 Msa0832360:intron 25.0%
! AGTAGATGTGAAAATTGAAA+TGG - chr5_4:5392313-5392332 None:intergenic 25.0%
! GAGATATAAGAAACAAAATC+TGG - chr5_4:5392473-5392492 None:intergenic 25.0%
! GTTTCTTATATCTCTACATT+AGG + chr5_4:5392479-5392498 Msa0832360:three_prime_UTR 25.0%
! TCTCAATTACATTATACATG+CGG + chr5_4:5392672-5392691 Msa0832360:three_prime_UTR 25.0%
! AACTTTAATGTGAAACGATT+TGG + chr5_4:5390596-5390615 Msa0832360:intron 25.0%
!!! GTTGATTTTAATCTTTGACT+TGG + chr5_4:5390911-5390930 Msa0832360:intron 25.0%
! AAACGACTACAATAAATAAC+AGG - chr5_4:5390980-5390999 None:intergenic 25.0%
!! TGAATTGAATAGTTACTTTC+CGG - chr5_4:5391324-5391343 None:intergenic 25.0%
! TCTCATCTATAATTTCGATA+TGG - chr5_4:5391523-5391542 None:intergenic 25.0%
! TGATTCTTAATAAGTGTGTT+TGG + chr5_4:5391849-5391868 Msa0832360:intron 25.0%
! GATTCTTAATAAGTGTGTTT+GGG + chr5_4:5391850-5391869 Msa0832360:intron 25.0%
! AGTAGATGTGAAAATTGAAA+TGG - chr5_4:5392313-5392332 None:intergenic 25.0%
! GAGATATAAGAAACAAAATC+TGG - chr5_4:5392473-5392492 None:intergenic 25.0%
! GTTTCTTATATCTCTACATT+AGG + chr5_4:5392479-5392498 Msa0832360:three_prime_UTR 25.0%
! TCTCAATTACATTATACATG+CGG + chr5_4:5392672-5392691 Msa0832360:three_prime_UTR 25.0%
CTTTAAATAATTTAGGCCGT+AGG + chr5_4:5390629-5390648 Msa0832360:intron 30.0%
!! AAAAAGTAGGTGGGTTAATT+TGG + chr5_4:5390714-5390733 Msa0832360:intron 30.0%
!! AAAAGTAGGTGGGTTAATTT+GGG + chr5_4:5390715-5390734 Msa0832360:intron 30.0%
ACAATAAATAACAGGAAGGA+AGG - chr5_4:5390972-5390991 None:intergenic 30.0%
GACTACAATAAATAACAGGA+AGG - chr5_4:5390976-5390995 None:intergenic 30.0%
AAGAGTCAACGATTCAAATA+TGG - chr5_4:5391167-5391186 None:intergenic 30.0%
TGAACTTCTCTTGAAATACA+GGG - chr5_4:5391217-5391236 None:intergenic 30.0%
ATGAACTTCTCTTGAAATAC+AGG - chr5_4:5391218-5391237 None:intergenic 30.0%
TCGAAATTATAGATGAGACA+TGG + chr5_4:5391525-5391544 Msa0832360:intron 30.0%
!! GATTGATACAGTTGTTTCTT+AGG + chr5_4:5391550-5391569 Msa0832360:intron 30.0%
AGACTTAATCAGTTAGCATT+AGG + chr5_4:5391623-5391642 Msa0832360:intron 30.0%
TAATGAAAATGTAGGTTACC+TGG - chr5_4:5391788-5391807 None:intergenic 30.0%
AAGGAACAGGATTATATGAT+GGG - chr5_4:5391931-5391950 None:intergenic 30.0%
GATGTGAAAATTGAAATGGT+TGG - chr5_4:5392309-5392328 None:intergenic 30.0%
ACTAATCATGTACAAAAGCA+CGG - chr5_4:5392436-5392455 None:intergenic 30.0%
!! ATAACTAAGATGTGGATTAG+TGG + chr5_4:5392607-5392626 Msa0832360:three_prime_UTR 30.0%
CTTTAAATAATTTAGGCCGT+AGG + chr5_4:5390629-5390648 Msa0832360:intron 30.0%
!! AAAAAGTAGGTGGGTTAATT+TGG + chr5_4:5390714-5390733 Msa0832360:intron 30.0%
!! AAAAGTAGGTGGGTTAATTT+GGG + chr5_4:5390715-5390734 Msa0832360:intron 30.0%
ACAATAAATAACAGGAAGGA+AGG - chr5_4:5390972-5390991 None:intergenic 30.0%
GACTACAATAAATAACAGGA+AGG - chr5_4:5390976-5390995 None:intergenic 30.0%
AAGAGTCAACGATTCAAATA+TGG - chr5_4:5391167-5391186 None:intergenic 30.0%
TGAACTTCTCTTGAAATACA+GGG - chr5_4:5391217-5391236 None:intergenic 30.0%
ATGAACTTCTCTTGAAATAC+AGG - chr5_4:5391218-5391237 None:intergenic 30.0%
TCGAAATTATAGATGAGACA+TGG + chr5_4:5391525-5391544 Msa0832360:intron 30.0%
!! GATTGATACAGTTGTTTCTT+AGG + chr5_4:5391550-5391569 Msa0832360:intron 30.0%
AGACTTAATCAGTTAGCATT+AGG + chr5_4:5391623-5391642 Msa0832360:intron 30.0%
TAATGAAAATGTAGGTTACC+TGG - chr5_4:5391788-5391807 None:intergenic 30.0%
AAGGAACAGGATTATATGAT+GGG - chr5_4:5391931-5391950 None:intergenic 30.0%
GATGTGAAAATTGAAATGGT+TGG - chr5_4:5392309-5392328 None:intergenic 30.0%
ACTAATCATGTACAAAAGCA+CGG - chr5_4:5392436-5392455 None:intergenic 30.0%
!! ATAACTAAGATGTGGATTAG+TGG + chr5_4:5392607-5392626 Msa0832360:three_prime_UTR 30.0%
TCTAATATGTTCTCACACGT+GGG + chr5_4:5390666-5390685 Msa0832360:intron 35.0%
!! AAAGTAGGTGGGTTAATTTG+GGG + chr5_4:5390716-5390735 Msa0832360:intron 35.0%
CGAAATTGAAAGACACTGAA+TGG + chr5_4:5391006-5391025 Msa0832360:CDS 35.0%
CTCTTTCTTTCAATTCCAGA+CGG + chr5_4:5391182-5391201 Msa0832360:intron 35.0%
TTCATACTTCCCCTAATTGA+AGG + chr5_4:5391233-5391252 Msa0832360:CDS 35.0%
GATAAAATCATCGAAGGTGA+CGG - chr5_4:5391297-5391316 None:intergenic 35.0%
! GTCACCTTCGATGATTTTAT+CGG + chr5_4:5391296-5391315 Msa0832360:CDS 35.0%
TTACACAAAGTTCTCTCTCA+AGG + chr5_4:5391428-5391447 Msa0832360:CDS 35.0%
TTTCGATATGGATGAGACAA+AGG - chr5_4:5391511-5391530 None:intergenic 35.0%
GCTAATATATTGCAGAAACC+AGG + chr5_4:5391875-5391894 Msa0832360:intron 35.0%
GAAGGAACAGGATTATATGA+TGG - chr5_4:5391932-5391951 None:intergenic 35.0%
AATTAGAGTGTGGTTGTTGT+GGG - chr5_4:5391961-5391980 None:intergenic 35.0%
TAATTAGAGTGTGGTTGTTG+TGG - chr5_4:5391962-5391981 None:intergenic 35.0%
AAGAATTACTTACCAGCGTT+TGG - chr5_4:5392277-5392296 None:intergenic 35.0%
GAAAAAGGATGTGATTGGAA+AGG - chr5_4:5392352-5392371 None:intergenic 35.0%
! TTCCAATCACATCCTTTTTC+AGG + chr5_4:5392352-5392371 Msa0832360:intron 35.0%
ATCCTGAAAAAGGATGTGAT+TGG - chr5_4:5392357-5392376 None:intergenic 35.0%
GTAGCATATGTGTGTCAATA+TGG - chr5_4:5392394-5392413 None:intergenic 35.0%
GGACTGTTTAGTATCCAATT+TGG + chr5_4:5392693-5392712 Msa0832360:three_prime_UTR 35.0%
TTCTCTGTGTATGACCAAAT+TGG - chr5_4:5392710-5392729 None:intergenic 35.0%
TACACAGAGAATGACAAACT+TGG + chr5_4:5392719-5392738 Msa0832360:three_prime_UTR 35.0%
ACACAGAGAATGACAAACTT+GGG + chr5_4:5392720-5392739 Msa0832360:three_prime_UTR 35.0%
TCTAATATGTTCTCACACGT+GGG + chr5_4:5390666-5390685 Msa0832360:intron 35.0%
!! AAAGTAGGTGGGTTAATTTG+GGG + chr5_4:5390716-5390735 Msa0832360:intron 35.0%
CGAAATTGAAAGACACTGAA+TGG + chr5_4:5391006-5391025 Msa0832360:CDS 35.0%
CTCTTTCTTTCAATTCCAGA+CGG + chr5_4:5391182-5391201 Msa0832360:intron 35.0%
TTCATACTTCCCCTAATTGA+AGG + chr5_4:5391233-5391252 Msa0832360:CDS 35.0%
GATAAAATCATCGAAGGTGA+CGG - chr5_4:5391297-5391316 None:intergenic 35.0%
! GTCACCTTCGATGATTTTAT+CGG + chr5_4:5391296-5391315 Msa0832360:CDS 35.0%
TTACACAAAGTTCTCTCTCA+AGG + chr5_4:5391428-5391447 Msa0832360:CDS 35.0%
TTTCGATATGGATGAGACAA+AGG - chr5_4:5391511-5391530 None:intergenic 35.0%
GCTAATATATTGCAGAAACC+AGG + chr5_4:5391875-5391894 Msa0832360:intron 35.0%
GAAGGAACAGGATTATATGA+TGG - chr5_4:5391932-5391951 None:intergenic 35.0%
AATTAGAGTGTGGTTGTTGT+GGG - chr5_4:5391961-5391980 None:intergenic 35.0%
TAATTAGAGTGTGGTTGTTG+TGG - chr5_4:5391962-5391981 None:intergenic 35.0%
AAGAATTACTTACCAGCGTT+TGG - chr5_4:5392277-5392296 None:intergenic 35.0%
GAAAAAGGATGTGATTGGAA+AGG - chr5_4:5392352-5392371 None:intergenic 35.0%
! TTCCAATCACATCCTTTTTC+AGG + chr5_4:5392352-5392371 Msa0832360:intron 35.0%
ATCCTGAAAAAGGATGTGAT+TGG - chr5_4:5392357-5392376 None:intergenic 35.0%
GTAGCATATGTGTGTCAATA+TGG - chr5_4:5392394-5392413 None:intergenic 35.0%
GGACTGTTTAGTATCCAATT+TGG + chr5_4:5392693-5392712 Msa0832360:three_prime_UTR 35.0%
TTCTCTGTGTATGACCAAAT+TGG - chr5_4:5392710-5392729 None:intergenic 35.0%
TACACAGAGAATGACAAACT+TGG + chr5_4:5392719-5392738 Msa0832360:three_prime_UTR 35.0%
ACACAGAGAATGACAAACTT+GGG + chr5_4:5392720-5392739 Msa0832360:three_prime_UTR 35.0%
ACATATTAGACCACTCGAGA+GGG - chr5_4:5390656-5390675 None:intergenic 40.0%
AACATATTAGACCACTCGAG+AGG - chr5_4:5390657-5390676 None:intergenic 40.0%
GTCTAATATGTTCTCACACG+TGG + chr5_4:5390665-5390684 Msa0832360:intron 40.0%
! TTCACGATGATGATGATGTC+TGG + chr5_4:5390845-5390864 Msa0832360:exon 40.0%
! TCACGATGATGATGATGTCT+GGG + chr5_4:5390846-5390865 Msa0832360:exon 40.0%
! ATGATGATGTCTGGGATTCA+AGG + chr5_4:5390854-5390873 Msa0832360:CDS 40.0%
AACCAGTGCATGTTCTTGTT+CGG - chr5_4:5391082-5391101 None:intergenic 40.0%
TTTCTTTCAATTCCAGACGG+CGG + chr5_4:5391185-5391204 Msa0832360:intron 40.0%
GTGAGATCAATGTTGTCGTT+TGG + chr5_4:5391261-5391280 Msa0832360:CDS 40.0%
! TTCGATGATTTTATCGGCAC+CGG + chr5_4:5391302-5391321 Msa0832360:CDS 40.0%
!! AAGGTTTTGACGACTCTTCT+TGG + chr5_4:5391447-5391466 Msa0832360:CDS 40.0%
TGGCCACTTCAAACTAAAAC+TGG + chr5_4:5391467-5391486 Msa0832360:CDS 40.0%
!!! CTGCCAGTTTTAGTTTGAAG+TGG - chr5_4:5391473-5391492 None:intergenic 40.0%
CACTTCAAACTAAAACTGGC+AGG + chr5_4:5391471-5391490 Msa0832360:CDS 40.0%
GATGAGACAAAGGAATACTG+AGG - chr5_4:5391501-5391520 None:intergenic 40.0%
! TATGATGGGACTGCTGTATA+GGG - chr5_4:5391917-5391936 None:intergenic 40.0%
! ATATGATGGGACTGCTGTAT+AGG - chr5_4:5391918-5391937 None:intergenic 40.0%
GGATGGTGATAATTAGAGTG+TGG - chr5_4:5391971-5391990 None:intergenic 40.0%
TATGTGAATGTGAAGCAGCA+GGG - chr5_4:5392036-5392055 None:intergenic 40.0%
TTATGTGAATGTGAAGCAGC+AGG - chr5_4:5392037-5392056 None:intergenic 40.0%
TATGGATATGTTGAGGATGG+TGG - chr5_4:5392073-5392092 None:intergenic 40.0%
! TTGAGGGTATGGATATGTTG+AGG - chr5_4:5392080-5392099 None:intergenic 40.0%
!! GATGATGAAGTTGGTGGATA+GGG - chr5_4:5392166-5392185 None:intergenic 40.0%
!! TGATGATGAAGTTGGTGGAT+AGG - chr5_4:5392167-5392186 None:intergenic 40.0%
! GATGGTGATGATGATGAAGT+TGG - chr5_4:5392175-5392194 None:intergenic 40.0%
AATTACTTACCAGCGTTTGG+AGG - chr5_4:5392274-5392293 None:intergenic 40.0%
GCATATGTGTGTCAATATGG+CGG - chr5_4:5392391-5392410 None:intergenic 40.0%
!! ATATGCTACTTTCGCTACCA+AGG + chr5_4:5392405-5392424 Msa0832360:three_prime_UTR 40.0%
! AATCATGTACAAAAGCACGG+TGG - chr5_4:5392433-5392452 None:intergenic 40.0%
GTATTCACCCATCCATGTTA+TGG + chr5_4:5392749-5392768 Msa0832360:three_prime_UTR 40.0%
ACTCACTCCATAACATGGAT+GGG - chr5_4:5392759-5392778 None:intergenic 40.0%
ATCCATGTTATGGAGTGAGT+GGG + chr5_4:5392759-5392778 Msa0832360:three_prime_UTR 40.0%
ACATATTAGACCACTCGAGA+GGG - chr5_4:5390656-5390675 None:intergenic 40.0%
AACATATTAGACCACTCGAG+AGG - chr5_4:5390657-5390676 None:intergenic 40.0%
GTCTAATATGTTCTCACACG+TGG + chr5_4:5390665-5390684 Msa0832360:intron 40.0%
! TTCACGATGATGATGATGTC+TGG + chr5_4:5390845-5390864 Msa0832360:exon 40.0%
! TCACGATGATGATGATGTCT+GGG + chr5_4:5390846-5390865 Msa0832360:exon 40.0%
! ATGATGATGTCTGGGATTCA+AGG + chr5_4:5390854-5390873 Msa0832360:CDS 40.0%
AACCAGTGCATGTTCTTGTT+CGG - chr5_4:5391082-5391101 None:intergenic 40.0%
TTTCTTTCAATTCCAGACGG+CGG + chr5_4:5391185-5391204 Msa0832360:intron 40.0%
GTGAGATCAATGTTGTCGTT+TGG + chr5_4:5391261-5391280 Msa0832360:CDS 40.0%
! TTCGATGATTTTATCGGCAC+CGG + chr5_4:5391302-5391321 Msa0832360:CDS 40.0%
!! AAGGTTTTGACGACTCTTCT+TGG + chr5_4:5391447-5391466 Msa0832360:CDS 40.0%
TGGCCACTTCAAACTAAAAC+TGG + chr5_4:5391467-5391486 Msa0832360:CDS 40.0%
!!! CTGCCAGTTTTAGTTTGAAG+TGG - chr5_4:5391473-5391492 None:intergenic 40.0%
CACTTCAAACTAAAACTGGC+AGG + chr5_4:5391471-5391490 Msa0832360:CDS 40.0%
GATGAGACAAAGGAATACTG+AGG - chr5_4:5391501-5391520 None:intergenic 40.0%
! TATGATGGGACTGCTGTATA+GGG - chr5_4:5391917-5391936 None:intergenic 40.0%
! ATATGATGGGACTGCTGTAT+AGG - chr5_4:5391918-5391937 None:intergenic 40.0%
GGATGGTGATAATTAGAGTG+TGG - chr5_4:5391971-5391990 None:intergenic 40.0%
TATGTGAATGTGAAGCAGCA+GGG - chr5_4:5392036-5392055 None:intergenic 40.0%
TTATGTGAATGTGAAGCAGC+AGG - chr5_4:5392037-5392056 None:intergenic 40.0%
TATGGATATGTTGAGGATGG+TGG - chr5_4:5392073-5392092 None:intergenic 40.0%
! TTGAGGGTATGGATATGTTG+AGG - chr5_4:5392080-5392099 None:intergenic 40.0%
!! GATGATGAAGTTGGTGGATA+GGG - chr5_4:5392166-5392185 None:intergenic 40.0%
!! TGATGATGAAGTTGGTGGAT+AGG - chr5_4:5392167-5392186 None:intergenic 40.0%
! GATGGTGATGATGATGAAGT+TGG - chr5_4:5392175-5392194 None:intergenic 40.0%
AATTACTTACCAGCGTTTGG+AGG - chr5_4:5392274-5392293 None:intergenic 40.0%
GCATATGTGTGTCAATATGG+CGG - chr5_4:5392391-5392410 None:intergenic 40.0%
!! ATATGCTACTTTCGCTACCA+AGG + chr5_4:5392405-5392424 Msa0832360:three_prime_UTR 40.0%
! AATCATGTACAAAAGCACGG+TGG - chr5_4:5392433-5392452 None:intergenic 40.0%
GTATTCACCCATCCATGTTA+TGG + chr5_4:5392749-5392768 Msa0832360:three_prime_UTR 40.0%
ACTCACTCCATAACATGGAT+GGG - chr5_4:5392759-5392778 None:intergenic 40.0%
ATCCATGTTATGGAGTGAGT+GGG + chr5_4:5392759-5392778 Msa0832360:three_prime_UTR 40.0%
CATATTAGACCACTCGAGAG+GGG - chr5_4:5390655-5390674 None:intergenic 45.0%
ATCTTACCAGTAACCTCGAG+AGG - chr5_4:5390884-5390903 None:intergenic 45.0%
GCGTATTCGATGCAAACGTA+GGG - chr5_4:5391047-5391066 None:intergenic 45.0%
AGCGTATTCGATGCAAACGT+AGG - chr5_4:5391048-5391067 None:intergenic 45.0%
TGTTCTTGTTCGGAACTTGG+TGG - chr5_4:5391072-5391091 None:intergenic 45.0%
GCATGTTCTTGTTCGGAACT+TGG - chr5_4:5391075-5391094 None:intergenic 45.0%
TTCCGAACAAGAACATGCAC+TGG + chr5_4:5391077-5391096 Msa0832360:CDS 45.0%
TCACGAAGGCCTTCAATTAG+GGG - chr5_4:5391245-5391264 None:intergenic 45.0%
CTCACGAAGGCCTTCAATTA+GGG - chr5_4:5391246-5391265 None:intergenic 45.0%
TCTCACGAAGGCCTTCAATT+AGG - chr5_4:5391247-5391266 None:intergenic 45.0%
CGACAACATTGATCTCACGA+AGG - chr5_4:5391259-5391278 None:intergenic 45.0%
!! GGTGCCGATAAAATCATCGA+AGG - chr5_4:5391303-5391322 None:intergenic 45.0%
!! ATTCACTTTGGCATTGGCAC+TGG - chr5_4:5391763-5391782 None:intergenic 45.0%
CTGGTGATTCACTTTGGCAT+TGG - chr5_4:5391769-5391788 None:intergenic 45.0%
CAATGCCAAAGTGAATCACC+AGG + chr5_4:5391767-5391786 Msa0832360:CDS 45.0%
GGTTACCTGGTGATTCACTT+TGG - chr5_4:5391775-5391794 None:intergenic 45.0%
! TGTATAGGGAGTATGGCTTG+AGG - chr5_4:5391903-5391922 None:intergenic 45.0%
! TAAGCAACAGCAGGTGTTGT+TGG - chr5_4:5391992-5392011 None:intergenic 45.0%
!! GAGGATGGTGGATAAGAAGA+TGG - chr5_4:5392061-5392080 None:intergenic 45.0%
GGGTATGGATATGTTGAGGA+TGG - chr5_4:5392076-5392095 None:intergenic 45.0%
! GATGACACTGATTGAGGGTA+TGG - chr5_4:5392091-5392110 None:intergenic 45.0%
! AGGGAGATGACACTGATTGA+GGG - chr5_4:5392096-5392115 None:intergenic 45.0%
! TAGGGAGATGACACTGATTG+AGG - chr5_4:5392097-5392116 None:intergenic 45.0%
! TATGGTGATGATGATGAGGG+TGG - chr5_4:5392124-5392143 None:intergenic 45.0%
! GGGTATGGTGATGATGATGA+GGG - chr5_4:5392127-5392146 None:intergenic 45.0%
! AGGGTATGGTGATGATGATG+AGG - chr5_4:5392128-5392147 None:intergenic 45.0%
! GGTGATGATGATGAAGTTGG+TGG - chr5_4:5392172-5392191 None:intergenic 45.0%
!! TGAAGATGGCGGATAAGAGT+GGG - chr5_4:5392212-5392231 None:intergenic 45.0%
GGAGGGTAGAATCCTGAAAA+AGG - chr5_4:5392367-5392386 None:intergenic 45.0%
TATGTGTGTCAATATGGCGG+TGG - chr5_4:5392388-5392407 None:intergenic 45.0%
CACTCACTCCATAACATGGA+TGG - chr5_4:5392760-5392779 None:intergenic 45.0%
CATCCATGTTATGGAGTGAG+TGG + chr5_4:5392758-5392777 Msa0832360:three_prime_UTR 45.0%
CATATTAGACCACTCGAGAG+GGG - chr5_4:5390655-5390674 None:intergenic 45.0%
ATCTTACCAGTAACCTCGAG+AGG - chr5_4:5390884-5390903 None:intergenic 45.0%
GCGTATTCGATGCAAACGTA+GGG - chr5_4:5391047-5391066 None:intergenic 45.0%
AGCGTATTCGATGCAAACGT+AGG - chr5_4:5391048-5391067 None:intergenic 45.0%
TGTTCTTGTTCGGAACTTGG+TGG - chr5_4:5391072-5391091 None:intergenic 45.0%
GCATGTTCTTGTTCGGAACT+TGG - chr5_4:5391075-5391094 None:intergenic 45.0%
TTCCGAACAAGAACATGCAC+TGG + chr5_4:5391077-5391096 Msa0832360:CDS 45.0%
TCACGAAGGCCTTCAATTAG+GGG - chr5_4:5391245-5391264 None:intergenic 45.0%
CTCACGAAGGCCTTCAATTA+GGG - chr5_4:5391246-5391265 None:intergenic 45.0%
TCTCACGAAGGCCTTCAATT+AGG - chr5_4:5391247-5391266 None:intergenic 45.0%
CGACAACATTGATCTCACGA+AGG - chr5_4:5391259-5391278 None:intergenic 45.0%
!! GGTGCCGATAAAATCATCGA+AGG - chr5_4:5391303-5391322 None:intergenic 45.0%
!! ATTCACTTTGGCATTGGCAC+TGG - chr5_4:5391763-5391782 None:intergenic 45.0%
CTGGTGATTCACTTTGGCAT+TGG - chr5_4:5391769-5391788 None:intergenic 45.0%
CAATGCCAAAGTGAATCACC+AGG + chr5_4:5391767-5391786 Msa0832360:CDS 45.0%
GGTTACCTGGTGATTCACTT+TGG - chr5_4:5391775-5391794 None:intergenic 45.0%
! TGTATAGGGAGTATGGCTTG+AGG - chr5_4:5391903-5391922 None:intergenic 45.0%
! TAAGCAACAGCAGGTGTTGT+TGG - chr5_4:5391992-5392011 None:intergenic 45.0%
!! GAGGATGGTGGATAAGAAGA+TGG - chr5_4:5392061-5392080 None:intergenic 45.0%
GGGTATGGATATGTTGAGGA+TGG - chr5_4:5392076-5392095 None:intergenic 45.0%
! GATGACACTGATTGAGGGTA+TGG - chr5_4:5392091-5392110 None:intergenic 45.0%
! AGGGAGATGACACTGATTGA+GGG - chr5_4:5392096-5392115 None:intergenic 45.0%
! TAGGGAGATGACACTGATTG+AGG - chr5_4:5392097-5392116 None:intergenic 45.0%
! TATGGTGATGATGATGAGGG+TGG - chr5_4:5392124-5392143 None:intergenic 45.0%
! GGGTATGGTGATGATGATGA+GGG - chr5_4:5392127-5392146 None:intergenic 45.0%
! AGGGTATGGTGATGATGATG+AGG - chr5_4:5392128-5392147 None:intergenic 45.0%
! GGTGATGATGATGAAGTTGG+TGG - chr5_4:5392172-5392191 None:intergenic 45.0%
!! TGAAGATGGCGGATAAGAGT+GGG - chr5_4:5392212-5392231 None:intergenic 45.0%
GGAGGGTAGAATCCTGAAAA+AGG - chr5_4:5392367-5392386 None:intergenic 45.0%
TATGTGTGTCAATATGGCGG+TGG - chr5_4:5392388-5392407 None:intergenic 45.0%
CACTCACTCCATAACATGGA+TGG - chr5_4:5392760-5392779 None:intergenic 45.0%
CATCCATGTTATGGAGTGAG+TGG + chr5_4:5392758-5392777 Msa0832360:three_prime_UTR 45.0%
!! GGTGGGTTAATTTGGGGATG+AGG + chr5_4:5390722-5390741 Msa0832360:intron 50.0%
!! TTTGGCATTGGCACTGGCAT+TGG - chr5_4:5391757-5391776 None:intergenic 50.0%
GGACTGCTGTATAGGGAGTA+TGG - chr5_4:5391910-5391929 None:intergenic 50.0%
TGTGGGTAGTAGGAAGGAAC+AGG - chr5_4:5391944-5391963 None:intergenic 50.0%
GGTTGTTGTGGGTAGTAGGA+AGG - chr5_4:5391950-5391969 None:intergenic 50.0%
GTGTGGTTGTTGTGGGTAGT+AGG - chr5_4:5391954-5391973 None:intergenic 50.0%
!! CAACAGCAGGTGTTGTTGGA+TGG - chr5_4:5391988-5392007 None:intergenic 50.0%
GGTTGTGGATAAGCAACAGC+AGG - chr5_4:5392001-5392020 None:intergenic 50.0%
GAATGTGAAGCAGCAGGGTA+AGG - chr5_4:5392031-5392050 None:intergenic 50.0%
!! GATGATGAGGGTGGTGGATA+GGG - chr5_4:5392115-5392134 None:intergenic 50.0%
!! TGATGATGAGGGTGGTGGAT+AGG - chr5_4:5392116-5392135 None:intergenic 50.0%
!! GAAGTTGGTGGATAGGGAGA+TGG - chr5_4:5392160-5392179 None:intergenic 50.0%
!! GAAGATGGCGGATAAGAGTG+GGG - chr5_4:5392211-5392230 None:intergenic 50.0%
!! CTGAAGATGGCGGATAAGAG+TGG - chr5_4:5392213-5392232 None:intergenic 50.0%
GGTGGATAAGCTGAAGATGG+CGG - chr5_4:5392223-5392242 None:intergenic 50.0%
!! GGTGGTGGATAAGCTGAAGA+TGG - chr5_4:5392226-5392245 None:intergenic 50.0%
TTTGGAGGATAACCTGCAGG+TGG - chr5_4:5392259-5392278 None:intergenic 50.0%
TGTGTCAATATGGCGGTGGA+GGG - chr5_4:5392384-5392403 None:intergenic 50.0%
! ACAAAAGCACGGTGGTTCCT+TGG - chr5_4:5392425-5392444 None:intergenic 50.0%
AGCCCACTCACTCCATAACA+TGG - chr5_4:5392764-5392783 None:intergenic 50.0%
!! GGTGGGTTAATTTGGGGATG+AGG + chr5_4:5390722-5390741 Msa0832360:intron 50.0%
!! TTTGGCATTGGCACTGGCAT+TGG - chr5_4:5391757-5391776 None:intergenic 50.0%
GGACTGCTGTATAGGGAGTA+TGG - chr5_4:5391910-5391929 None:intergenic 50.0%
TGTGGGTAGTAGGAAGGAAC+AGG - chr5_4:5391944-5391963 None:intergenic 50.0%
GGTTGTTGTGGGTAGTAGGA+AGG - chr5_4:5391950-5391969 None:intergenic 50.0%
GTGTGGTTGTTGTGGGTAGT+AGG - chr5_4:5391954-5391973 None:intergenic 50.0%
!! CAACAGCAGGTGTTGTTGGA+TGG - chr5_4:5391988-5392007 None:intergenic 50.0%
GGTTGTGGATAAGCAACAGC+AGG - chr5_4:5392001-5392020 None:intergenic 50.0%
GAATGTGAAGCAGCAGGGTA+AGG - chr5_4:5392031-5392050 None:intergenic 50.0%
!! GATGATGAGGGTGGTGGATA+GGG - chr5_4:5392115-5392134 None:intergenic 50.0%
!! TGATGATGAGGGTGGTGGAT+AGG - chr5_4:5392116-5392135 None:intergenic 50.0%
!! GAAGTTGGTGGATAGGGAGA+TGG - chr5_4:5392160-5392179 None:intergenic 50.0%
!! GAAGATGGCGGATAAGAGTG+GGG - chr5_4:5392211-5392230 None:intergenic 50.0%
!! CTGAAGATGGCGGATAAGAG+TGG - chr5_4:5392213-5392232 None:intergenic 50.0%
GGTGGATAAGCTGAAGATGG+CGG - chr5_4:5392223-5392242 None:intergenic 50.0%
!! GGTGGTGGATAAGCTGAAGA+TGG - chr5_4:5392226-5392245 None:intergenic 50.0%
TTTGGAGGATAACCTGCAGG+TGG - chr5_4:5392259-5392278 None:intergenic 50.0%
TGTGTCAATATGGCGGTGGA+GGG - chr5_4:5392384-5392403 None:intergenic 50.0%
! ACAAAAGCACGGTGGTTCCT+TGG - chr5_4:5392425-5392444 None:intergenic 50.0%
AGCCCACTCACTCCATAACA+TGG - chr5_4:5392764-5392783 None:intergenic 50.0%
TACCAGTAACCTCGAGAGGC+TGG - chr5_4:5390880-5390899 None:intergenic 55.0%
!!! ACAGGGTTTTTTCCGCCGTC+TGG - chr5_4:5391200-5391219 None:intergenic 55.0%
CGTGTCTGTCAGACAGACAG+GGG - chr5_4:5391704-5391723 None:intergenic 55.0%
GCGTGTCTGTCAGACAGACA+GGG - chr5_4:5391705-5391724 None:intergenic 55.0%
TGCGTGTCTGTCAGACAGAC+AGG - chr5_4:5391706-5391725 None:intergenic 55.0%
TGTCTGTCTGACAGACACGC+AGG + chr5_4:5391705-5391724 Msa0832360:intron 55.0%
TGTGAAGCAGCAGGGTAAGG+TGG - chr5_4:5392028-5392047 None:intergenic 55.0%
! GGTGATGATGATGAGGGTGG+TGG - chr5_4:5392121-5392140 None:intergenic 55.0%
! GATGGCACTGAAGGAGGGTA+TGG - chr5_4:5392142-5392161 None:intergenic 55.0%
! AGGGAGATGGCACTGAAGGA+GGG - chr5_4:5392147-5392166 None:intergenic 55.0%
! TAGGGAGATGGCACTGAAGG+AGG - chr5_4:5392148-5392167 None:intergenic 55.0%
! GGATAGGGAGATGGCACTGA+AGG - chr5_4:5392151-5392170 None:intergenic 55.0%
TAAGAGTGGGGAGGAGGGTA+CGG - chr5_4:5392199-5392218 None:intergenic 55.0%
GAGGATAACCTGCAGGTGGA+GGG - chr5_4:5392255-5392274 None:intergenic 55.0%
GCGTTTGGAGGATAACCTGC+AGG - chr5_4:5392262-5392281 None:intergenic 55.0%
GCAGGTTATCCTCCAAACGC+TGG + chr5_4:5392262-5392281 Msa0832360:CDS 55.0%
GTGTGTCAATATGGCGGTGG+AGG - chr5_4:5392385-5392404 None:intergenic 55.0%
TACCAGTAACCTCGAGAGGC+TGG - chr5_4:5390880-5390899 None:intergenic 55.0%
!!! ACAGGGTTTTTTCCGCCGTC+TGG - chr5_4:5391200-5391219 None:intergenic 55.0%
CGTGTCTGTCAGACAGACAG+GGG - chr5_4:5391704-5391723 None:intergenic 55.0%
GCGTGTCTGTCAGACAGACA+GGG - chr5_4:5391705-5391724 None:intergenic 55.0%
TGCGTGTCTGTCAGACAGAC+AGG - chr5_4:5391706-5391725 None:intergenic 55.0%
TGTCTGTCTGACAGACACGC+AGG + chr5_4:5391705-5391724 Msa0832360:intron 55.0%
TGTGAAGCAGCAGGGTAAGG+TGG - chr5_4:5392028-5392047 None:intergenic 55.0%
! GGTGATGATGATGAGGGTGG+TGG - chr5_4:5392121-5392140 None:intergenic 55.0%
! GATGGCACTGAAGGAGGGTA+TGG - chr5_4:5392142-5392161 None:intergenic 55.0%
! AGGGAGATGGCACTGAAGGA+GGG - chr5_4:5392147-5392166 None:intergenic 55.0%
! TAGGGAGATGGCACTGAAGG+AGG - chr5_4:5392148-5392167 None:intergenic 55.0%
! GGATAGGGAGATGGCACTGA+AGG - chr5_4:5392151-5392170 None:intergenic 55.0%
TAAGAGTGGGGAGGAGGGTA+CGG - chr5_4:5392199-5392218 None:intergenic 55.0%
GAGGATAACCTGCAGGTGGA+GGG - chr5_4:5392255-5392274 None:intergenic 55.0%
GCGTTTGGAGGATAACCTGC+AGG - chr5_4:5392262-5392281 None:intergenic 55.0%
GCAGGTTATCCTCCAAACGC+TGG + chr5_4:5392262-5392281 Msa0832360:CDS 55.0%
GTGTGTCAATATGGCGGTGG+AGG - chr5_4:5392385-5392404 None:intergenic 55.0%
GATTCAAGGCCAGCCTCTCG+AGG + chr5_4:5390868-5390887 Msa0832360:CDS 60.0%
GGAGTATGGCTTGAGGAGCC+TGG - chr5_4:5391896-5391915 None:intergenic 60.0%
!! GGGTAAGGTGGTGGTGGTTG+TGG - chr5_4:5392016-5392035 None:intergenic 60.0%
GAAGCAGCAGGGTAAGGTGG+TGG - chr5_4:5392025-5392044 None:intergenic 60.0%
GCGGATAAGAGTGGGGAGGA+GGG - chr5_4:5392204-5392223 None:intergenic 60.0%
!! GATGGCGGATAAGAGTGGGG+AGG - chr5_4:5392208-5392227 None:intergenic 60.0%
!! GGTGGAGGGTATGATGGTGG+TGG - chr5_4:5392241-5392260 None:intergenic 60.0%
! GCAGGTGGAGGGTATGATGG+TGG - chr5_4:5392244-5392263 None:intergenic 60.0%
! CCTGCAGGTGGAGGGTATGA+TGG - chr5_4:5392247-5392266 None:intergenic 60.0%
CCATCATACCCTCCACCTGC+AGG + chr5_4:5392244-5392263 Msa0832360:CDS 60.0%
GGAGGATAACCTGCAGGTGG+AGG - chr5_4:5392256-5392275 None:intergenic 60.0%
GATTCAAGGCCAGCCTCTCG+AGG + chr5_4:5390868-5390887 Msa0832360:CDS 60.0%
GGAGTATGGCTTGAGGAGCC+TGG - chr5_4:5391896-5391915 None:intergenic 60.0%
!! GGGTAAGGTGGTGGTGGTTG+TGG - chr5_4:5392016-5392035 None:intergenic 60.0%
GAAGCAGCAGGGTAAGGTGG+TGG - chr5_4:5392025-5392044 None:intergenic 60.0%
GCGGATAAGAGTGGGGAGGA+GGG - chr5_4:5392204-5392223 None:intergenic 60.0%
!! GATGGCGGATAAGAGTGGGG+AGG - chr5_4:5392208-5392227 None:intergenic 60.0%
!! GGTGGAGGGTATGATGGTGG+TGG - chr5_4:5392241-5392260 None:intergenic 60.0%
! GCAGGTGGAGGGTATGATGG+TGG - chr5_4:5392244-5392263 None:intergenic 60.0%
! CCTGCAGGTGGAGGGTATGA+TGG - chr5_4:5392247-5392266 None:intergenic 60.0%
CCATCATACCCTCCACCTGC+AGG + chr5_4:5392244-5392263 Msa0832360:CDS 60.0%
GGAGGATAACCTGCAGGTGG+AGG - chr5_4:5392256-5392275 None:intergenic 60.0%
GACCACTCGAGAGGGGCCTA+CGG - chr5_4:5390648-5390667 None:intergenic 65.0%
GGCCAGCCTCTCGAGGTTAC+TGG + chr5_4:5390875-5390894 Msa0832360:CDS 65.0%
! GCAGCAGGGTAAGGTGGTGG+TGG - chr5_4:5392022-5392041 None:intergenic 65.0%
! TGGGGAGGAGGGTACGGTGA+TGG - chr5_4:5392193-5392212 None:intergenic 65.0%
GGCGGATAAGAGTGGGGAGG+AGG - chr5_4:5392205-5392224 None:intergenic 65.0%
GACCACTCGAGAGGGGCCTA+CGG - chr5_4:5390648-5390667 None:intergenic 65.0%
GGCCAGCCTCTCGAGGTTAC+TGG + chr5_4:5390875-5390894 Msa0832360:CDS 65.0%
! GCAGCAGGGTAAGGTGGTGG+TGG - chr5_4:5392022-5392041 None:intergenic 65.0%
! TGGGGAGGAGGGTACGGTGA+TGG - chr5_4:5392193-5392212 None:intergenic 65.0%
GGCGGATAAGAGTGGGGAGG+AGG - chr5_4:5392205-5392224 None:intergenic 65.0%
GGCCGTAGGCCCCTCTCGAG+TGG + chr5_4:5390643-5390662 Msa0832360:intron 75.0%
GGCCGTAGGCCCCTCTCGAG+TGG + chr5_4:5390643-5390662 Msa0832360:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5390520 5392796 5390520 ID=Msa0832360;Name=Msa0832360
chr5_4 mRNA 5390520 5392796 5390520 ID=Msa0832360-mRNA-1;Parent=Msa0832360;Name=Msa0832360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=55|1|1|1|0.85|0.75|8|397|279
chr5_4 exon 5390520 5390539 5390520 ID=Msa0832360-mRNA-1:exon:2333;Parent=Msa0832360-mRNA-1
chr5_4 exon 5390816 5390896 5390816 ID=Msa0832360-mRNA-1:exon:2334;Parent=Msa0832360-mRNA-1
chr5_4 exon 5390994 5391098 5390994 ID=Msa0832360-mRNA-1:exon:2335;Parent=Msa0832360-mRNA-1
chr5_4 exon 5391201 5391327 5391201 ID=Msa0832360-mRNA-1:exon:2336;Parent=Msa0832360-mRNA-1
chr5_4 exon 5391421 5391492 5391421 ID=Msa0832360-mRNA-1:exon:2337;Parent=Msa0832360-mRNA-1
chr5_4 exon 5391719 5391788 5391719 ID=Msa0832360-mRNA-1:exon:2338;Parent=Msa0832360-mRNA-1
chr5_4 exon 5391890 5392283 5391890 ID=Msa0832360-mRNA-1:exon:2339;Parent=Msa0832360-mRNA-1
chr5_4 exon 5392374 5392796 5392374 ID=Msa0832360-mRNA-1:exon:2340;Parent=Msa0832360-mRNA-1
chr5_4 five_prime_UTR 5390520 5390539 5390520 ID=Msa0832360-mRNA-1:five_prime_utr;Parent=Msa0832360-mRNA-1
chr5_4 five_prime_UTR 5390816 5390850 5390816 ID=Msa0832360-mRNA-1:five_prime_utr;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5390851 5390896 5390851 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5390994 5391098 5390994 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5391201 5391327 5391201 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5391421 5391492 5391421 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5391719 5391788 5391719 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5391890 5392283 5391890 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 CDS 5392374 5392399 5392374 ID=Msa0832360-mRNA-1:cds;Parent=Msa0832360-mRNA-1
chr5_4 three_prime_UTR 5392400 5392796 5392400 ID=Msa0832360-mRNA-1:three_prime_utr;Parent=Msa0832360-mRNA-1
Gene Sequence

>Msa0832360

ATGATGATGATGTCTGGGATTCAAGGCCAGCCTCTCGAGGTTACTGTCGTTTCTTGCTCGAAATTGAAAGACACTGAATGGATTTCAAGACAAGATCCCTACGTTTGCATCGAATACGCTTCCACCAAGTTCCGAACAAGAACATGCACTGACGGCGGAAAAAACCCTGTATTTCAAGAGAAGTTCATACTTCCCCTAATTGAAGGCCTTCGTGAGATCAATGTTGTCGTTTGGAACAGCAATACCGTCACCTTCGATGATTTTATCGGCACCGGAAAGGTTCAATTACACAAAGTTCTCTCTCAAGGTTTTGACGACTCTTCTTGGCCACTTCAAACTAAAACTGGCAGACACGCAGGCGAAGTAAAACTCATACTGCATTATGCCAATGCCAGTGCCAATGCCAAAGTGAATCACCAGAAACCAGGCTCCTCAAGCCATACTCCCTATACAGCAGTCCCATCATATAATCCTGTTCCTTCCTACTACCCACAACAACCACACTCTAATTATCACCATCCAACAACACCTGCTGTTGCTTATCCACAACCACCACCACCTTACCCTGCTGCTTCACATTCACATAATCCATCTTCTTATCCACCATCCTCAACATATCCATACCCTCAATCAGTGTCATCTCCCTATCCACCACCCTCATCATCATCACCATACCCTCCTTCAGTGCCATCTCCCTATCCACCAACTTCATCATCATCACCATCACCGTACCCTCCTCCCCACTCTTATCCGCCATCTTCAGCTTATCCACCACCATCATACCCTCCACCTGCAGGTTATCCTCCAAACGCTGGATTCTACCCTCCACCGCCATATTGA
Protein sequence

>Msa0832360

MMMMSGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYASTKFRTRTCTDGGKNPVFQEKFILPLIEGLREINVVVWNSNTVTFDDFIGTGKVQLHKVLSQGFDDSSWPLQTKTGRHAGEVKLILHYANASANAKVNHQKPGSSSHTPYTAVPSYNPVPSYYPQQPHSNYHHPTTPAVAYPQPPPPYPAASHSHNPSSYPPSSTYPYPQSVSSPYPPPSSSSPYPPSVPSPYPPTSSSSPSPYPPPHSYPPSSAYPPPSYPPPAGYPPNAGFYPPPPY*