Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586910 | XP_039689622.1 | 95.070 | 568 | 26 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1058 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586910 | sp|P0C897|Y3264_ARATH | 46.139 | 518 | 235 | 10 | 16 | 525 | 16 | 497 | 4.79e-151 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586910 | A0A396HYS8 | 95.070 | 568 | 26 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1058 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029880 | Msa0586910 | 0.819251 | 1.280992e-52 | -8.615850e-47 |
| Msa0029890 | Msa0586910 | 0.812648 | 3.815056e-51 | -8.615850e-47 |
| Msa0060400 | Msa0586910 | 0.800606 | 1.331837e-48 | -8.615850e-47 |
| Msa0112750 | Msa0586910 | 0.809180 | 2.149218e-50 | -8.615850e-47 |
| Msa0125090 | Msa0586910 | 0.805342 | 1.398267e-49 | -8.615850e-47 |
| Msa0125100 | Msa0586910 | 0.810849 | 9.394179e-51 | -8.615850e-47 |
| Msa0141230 | Msa0586910 | 0.825844 | 3.754707e-54 | -8.615850e-47 |
| Msa0142200 | Msa0586910 | 0.811390 | 7.172316e-51 | -8.615850e-47 |
| Msa0165510 | Msa0586910 | 0.815503 | 8.943164e-52 | -8.615850e-47 |
| Msa0169860 | Msa0586910 | 0.812604 | 3.900086e-51 | -8.615850e-47 |
| Msa0170090 | Msa0586910 | 0.804498 | 2.099014e-49 | -8.615850e-47 |
| Msa0191250 | Msa0586910 | 0.807276 | 5.470843e-50 | -8.615850e-47 |
| Msa0227470 | Msa0586910 | 0.822197 | 2.695044e-53 | -8.615850e-47 |
| Msa0234440 | Msa0586910 | 0.802267 | 6.084358e-49 | -8.615850e-47 |
| Msa0448550 | Msa0586910 | -0.805777 | 1.133146e-49 | -8.615850e-47 |
| Msa0452920 | Msa0586910 | 0.830948 | 2.202812e-55 | -8.615850e-47 |
| Msa0272730 | Msa0586910 | 0.813227 | 2.848199e-51 | -8.615850e-47 |
| Msa0276920 | Msa0586910 | 0.807393 | 5.167745e-50 | -8.615850e-47 |
| Msa0334350 | Msa0586910 | 0.806386 | 8.436749e-50 | -8.615850e-47 |
| Msa0356890 | Msa0586910 | -0.806236 | 9.070998e-50 | -8.615850e-47 |
| Msa0483650 | Msa0586910 | 0.895505 | 8.990178e-76 | -8.615850e-47 |
| Msa0483660 | Msa0586910 | 0.888246 | 6.998530e-73 | -8.615850e-47 |
| Msa0512900 | Msa0586910 | 0.804668 | 1.933995e-49 | -8.615850e-47 |
| Msa0586910 | Msa0626280 | 0.801958 | 7.042727e-49 | -8.615850e-47 |
| Msa0586910 | Msa0626720 | 0.850250 | 1.916899e-60 | -8.615850e-47 |
| Msa0586910 | Msa0664850 | 0.946655 | 3.049076e-105 | -8.615850e-47 |
| Msa0586910 | Msa0696740 | 0.831326 | 1.778593e-55 | -8.615850e-47 |
| Msa0586910 | Msa0696770 | 0.827478 | 1.530512e-54 | -8.615850e-47 |
| Msa0586910 | Msa0730270 | 0.810091 | 1.369562e-50 | -8.615850e-47 |
| Msa0586910 | Msa0754680 | 0.822152 | 2.759711e-53 | -8.615850e-47 |
| Msa0586910 | Msa0797350 | 0.844707 | 6.399774e-59 | -8.615850e-47 |
| Msa0586910 | Msa0829620 | 0.802872 | 4.565370e-49 | -8.615850e-47 |
| Msa0586910 | Msa0834860 | 0.801462 | 8.903097e-49 | -8.615850e-47 |
| Msa0586910 | Msa0843400 | 0.803306 | 3.712818e-49 | -8.615850e-47 |
| Msa0586910 | Msa0867890 | 0.810393 | 1.178454e-50 | -8.615850e-47 |
| Msa0586910 | Msa0868020 | 0.970715 | 4.864084e-132 | -8.615850e-47 |
| Msa0586910 | Msa0923010 | 0.803028 | 4.239161e-49 | -8.615850e-47 |
| Msa0586910 | Msa0964130 | 0.813300 | 2.744330e-51 | -8.615850e-47 |
| Msa0586910 | Msa1073070 | -0.800111 | 1.679664e-48 | -8.615850e-47 |
| Msa0586910 | Msa1080160 | 0.809118 | 2.215546e-50 | -8.615850e-47 |
| Msa0586910 | Msa1082500 | 0.814123 | 1.808439e-51 | -8.615850e-47 |
| Msa0586910 | Msa1176050 | 0.826547 | 2.554708e-54 | -8.615850e-47 |
| Msa0586910 | Msa1214880 | 0.803447 | 3.470370e-49 | -8.615850e-47 |
| Msa0586910 | Msa1267610 | 0.814263 | 1.683843e-51 | -8.615850e-47 |
| Msa0586910 | Msa1307210 | 0.800722 | 1.261280e-48 | -8.615850e-47 |
| Msa0586910 | Msa1341570 | 0.844320 | 8.133219e-59 | -8.615850e-47 |
| Msa0586910 | Msa1381940 | 0.828841 | 7.184858e-55 | -8.615850e-47 |
| Msa0586910 | Msa1453250 | 0.806710 | 7.208104e-50 | -8.615850e-47 |
| Msa0586910 | Msa1457430 | 0.810276 | 1.249372e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586910 | MtrunA17_Chr4g0002911 | 95.070 | 568 | 26 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1058 |
| Msa0586910 | MtrunA17_Chr4g0002901 | 74.956 | 571 | 136 | 7 | 1 | 566 | 1 | 569 | 0.0 | 848 |
| Msa0586910 | MtrunA17_Chr4g0002861 | 74.552 | 558 | 137 | 5 | 1 | 554 | 1 | 557 | 0.0 | 804 |
| Msa0586910 | MtrunA17_Chr7g0220521 | 60.036 | 553 | 210 | 8 | 1 | 551 | 1 | 544 | 0.0 | 662 |
| Msa0586910 | MtrunA17_Chr2g0300311 | 32.821 | 195 | 117 | 4 | 6 | 198 | 15 | 197 | 1.22e-21 | 98.2 |
| Msa0586910 | MtrunA17_Chr2g0297831 | 29.545 | 264 | 168 | 6 | 20 | 277 | 46 | 297 | 1.12e-19 | 92.4 |
| Msa0586910 | MtrunA17_Chr5g0439661 | 32.530 | 166 | 106 | 5 | 43 | 205 | 29 | 191 | 2.15e-17 | 80.9 |
| Msa0586910 | MtrunA17_Chr5g0439641 | 30.366 | 191 | 121 | 7 | 370 | 556 | 271 | 453 | 2.98e-17 | 84.7 |
| Msa0586910 | MtrunA17_Chr5g0439641 | 29.956 | 227 | 134 | 10 | 33 | 245 | 24 | 239 | 3.28e-13 | 72.0 |
| Msa0586910 | MtrunA17_Chr5g0439721 | 33.831 | 201 | 114 | 9 | 370 | 563 | 257 | 445 | 4.23e-17 | 84.0 |
| Msa0586910 | MtrunA17_Chr5g0439721 | 30.622 | 209 | 122 | 7 | 43 | 244 | 33 | 225 | 1.02e-15 | 79.7 |
| Msa0586910 | MtrunA17_Chr5g0401791 | 31.579 | 171 | 105 | 6 | 21 | 186 | 78 | 241 | 5.96e-17 | 84.0 |
| Msa0586910 | MtrunA17_Chr5g0440401 | 30.688 | 189 | 123 | 5 | 370 | 556 | 38 | 220 | 6.15e-17 | 80.1 |
| Msa0586910 | MtrunA17_Chr8g0335061 | 35.000 | 160 | 89 | 6 | 42 | 197 | 27 | 175 | 2.23e-15 | 78.6 |
| Msa0586910 | MtrunA17_Chr5g0439681 | 31.217 | 189 | 111 | 8 | 376 | 556 | 137 | 314 | 2.31e-15 | 77.4 |
| Msa0586910 | MtrunA17_Chr7g0238511 | 30.102 | 196 | 126 | 5 | 359 | 547 | 242 | 433 | 1.41e-14 | 76.3 |
| Msa0586910 | MtrunA17_Chr2g0296801 | 27.684 | 177 | 126 | 2 | 374 | 549 | 175 | 350 | 2.41e-14 | 74.7 |
| Msa0586910 | MtrunA17_Chr6g0452601 | 25.294 | 170 | 111 | 2 | 43 | 212 | 26 | 179 | 3.87e-14 | 74.7 |
| Msa0586910 | MtrunA17_Chr6g0452601 | 26.857 | 175 | 127 | 1 | 374 | 547 | 244 | 418 | 2.08e-11 | 66.2 |
| Msa0586910 | MtrunA17_Chr8g0334911 | 30.808 | 198 | 117 | 7 | 42 | 230 | 28 | 214 | 7.49e-14 | 73.9 |
| Msa0586910 | MtrunA17_Chr7g0218171 | 28.814 | 177 | 119 | 2 | 375 | 547 | 124 | 297 | 1.39e-13 | 71.6 |
| Msa0586910 | MtrunA17_Chr8g0334971 | 32.298 | 161 | 92 | 5 | 42 | 197 | 27 | 175 | 2.24e-13 | 72.4 |
| Msa0586910 | MtrunA17_Chr8g0334971 | 29.851 | 134 | 93 | 1 | 406 | 539 | 301 | 433 | 4.79e-12 | 68.2 |
| Msa0586910 | MtrunA17_Chr8g0335011 | 31.176 | 170 | 103 | 4 | 42 | 197 | 36 | 205 | 5.14e-13 | 71.6 |
| Msa0586910 | MtrunA17_Chr8g0335011 | 31.250 | 144 | 95 | 2 | 398 | 541 | 349 | 488 | 2.21e-12 | 69.7 |
| Msa0586910 | MtrunA17_Chr7g0238131 | 30.213 | 235 | 143 | 8 | 329 | 548 | 185 | 413 | 5.85e-13 | 70.9 |
| Msa0586910 | MtrunA17_Chr6g0452551 | 26.282 | 156 | 99 | 4 | 43 | 198 | 26 | 165 | 8.06e-13 | 70.5 |
| Msa0586910 | MtrunA17_Chr8g0334951 | 31.646 | 158 | 94 | 6 | 42 | 195 | 29 | 176 | 8.22e-13 | 70.5 |
| Msa0586910 | MtrunA17_Chr6g0452531 | 26.875 | 160 | 93 | 4 | 43 | 198 | 26 | 165 | 9.94e-13 | 70.1 |
| Msa0586910 | MtrunA17_Chr6g0452531 | 29.050 | 179 | 126 | 1 | 370 | 547 | 232 | 410 | 1.97e-12 | 69.3 |
| Msa0586910 | MtrunA17_Chr6g0452561 | 28.261 | 184 | 123 | 3 | 372 | 547 | 243 | 425 | 1.53e-12 | 69.7 |
| Msa0586910 | MtrunA17_Chr6g0452561 | 25.143 | 175 | 117 | 4 | 35 | 207 | 18 | 180 | 8.36e-11 | 64.3 |
| Msa0586910 | MtrunA17_Chr3g0118601 | 29.885 | 174 | 119 | 2 | 376 | 547 | 277 | 449 | 1.80e-12 | 69.7 |
| Msa0586910 | MtrunA17_Chr8g0335071 | 29.448 | 163 | 111 | 4 | 385 | 547 | 297 | 455 | 2.44e-12 | 69.3 |
| Msa0586910 | MtrunA17_Chr7g0265891 | 28.571 | 189 | 125 | 4 | 374 | 555 | 270 | 455 | 3.61e-12 | 68.6 |
| Msa0586910 | MtrunA17_Chr6g0452501 | 25.000 | 156 | 101 | 3 | 43 | 198 | 26 | 165 | 4.60e-12 | 68.2 |
| Msa0586910 | MtrunA17_Chr6g0452501 | 28.652 | 178 | 120 | 2 | 374 | 547 | 236 | 410 | 6.17e-11 | 64.7 |
| Msa0586910 | MtrunA17_Chr6g0452611 | 26.380 | 163 | 94 | 4 | 42 | 198 | 24 | 166 | 6.07e-12 | 67.8 |
| Msa0586910 | MtrunA17_Chr7g0238231 | 30.496 | 141 | 96 | 2 | 408 | 547 | 348 | 487 | 7.35e-12 | 67.8 |
| Msa0586910 | MtrunA17_Chr6g0452161 | 25.749 | 167 | 107 | 3 | 41 | 207 | 24 | 173 | 8.64e-12 | 67.4 |
| Msa0586910 | MtrunA17_Chr6g0457371 | 26.994 | 163 | 99 | 4 | 43 | 203 | 26 | 170 | 1.40e-11 | 66.6 |
| Msa0586910 | MtrunA17_Chr7g0242091 | 28.743 | 167 | 109 | 4 | 41 | 200 | 53 | 216 | 1.58e-11 | 67.0 |
| Msa0586910 | MtrunA17_Chr3g0107251 | 26.087 | 207 | 131 | 5 | 21 | 219 | 11 | 203 | 1.95e-11 | 66.6 |
| Msa0586910 | MtrunA17_Chr7g0238051 | 30.282 | 142 | 97 | 2 | 408 | 548 | 223 | 363 | 2.05e-11 | 65.9 |
| Msa0586910 | MtrunA17_Chr8g0335021 | 29.104 | 134 | 94 | 1 | 408 | 541 | 314 | 446 | 6.40e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586910 | AT3G02645.1 | 46.139 | 518 | 235 | 10 | 16 | 525 | 16 | 497 | 4.87e-152 | 447 |
| Msa0586910 | AT3G50120.1 | 33.816 | 207 | 125 | 6 | 21 | 224 | 80 | 277 | 5.65e-27 | 115 |
| Msa0586910 | AT3G50120.1 | 28.022 | 182 | 125 | 4 | 374 | 552 | 350 | 528 | 2.21e-11 | 67.0 |
| Msa0586910 | AT3G50180.1 | 33.010 | 206 | 127 | 5 | 21 | 224 | 155 | 351 | 5.33e-26 | 112 |
| Msa0586910 | AT3G50180.1 | 29.121 | 182 | 121 | 5 | 374 | 549 | 403 | 582 | 1.36e-11 | 67.8 |
| Msa0586910 | AT3G50170.2 | 31.308 | 214 | 135 | 6 | 13 | 224 | 84 | 287 | 1.54e-25 | 109 |
| Msa0586910 | AT3G50170.1 | 32.093 | 215 | 132 | 7 | 13 | 224 | 84 | 287 | 5.54e-25 | 109 |
| Msa0586910 | AT3G50170.1 | 26.111 | 180 | 131 | 2 | 374 | 552 | 358 | 536 | 6.93e-12 | 68.6 |
| Msa0586910 | AT3G50150.2 | 31.250 | 208 | 130 | 7 | 21 | 224 | 67 | 265 | 1.10e-23 | 104 |
| Msa0586910 | AT3G50140.2 | 31.579 | 209 | 133 | 5 | 21 | 227 | 90 | 290 | 1.12e-23 | 103 |
| Msa0586910 | AT3G50140.1 | 31.579 | 209 | 133 | 5 | 21 | 227 | 90 | 290 | 1.40e-23 | 105 |
| Msa0586910 | AT3G50140.1 | 25.871 | 201 | 143 | 3 | 353 | 548 | 333 | 532 | 5.00e-12 | 68.9 |
| Msa0586910 | AT3G50150.1 | 31.250 | 208 | 130 | 7 | 21 | 224 | 67 | 265 | 2.28e-23 | 104 |
| Msa0586910 | AT3G50150.1 | 30.288 | 208 | 128 | 7 | 357 | 552 | 304 | 506 | 2.72e-16 | 82.4 |
| Msa0586910 | AT3G44710.1 | 23.494 | 498 | 310 | 14 | 58 | 548 | 64 | 497 | 2.38e-23 | 103 |
| Msa0586910 | AT3G50130.1 | 29.126 | 206 | 136 | 5 | 21 | 224 | 116 | 313 | 7.53e-23 | 102 |
| Msa0586910 | AT3G50160.1 | 31.250 | 208 | 124 | 7 | 20 | 225 | 81 | 271 | 2.40e-20 | 94.7 |
| Msa0586910 | AT3G50160.1 | 30.348 | 201 | 122 | 7 | 356 | 549 | 306 | 495 | 5.79e-14 | 75.1 |
| Msa0586910 | AT3G50190.2 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 3.82e-18 | 86.7 |
| Msa0586910 | AT3G50190.4 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 4.59e-18 | 86.7 |
| Msa0586910 | AT3G50190.3 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 4.59e-18 | 86.7 |
| Msa0586910 | AT3G50190.1 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 7.34e-18 | 87.0 |
| Msa0586910 | AT5G11290.2 | 31.677 | 161 | 95 | 3 | 41 | 198 | 32 | 180 | 1.42e-16 | 82.8 |
| Msa0586910 | AT3G47200.1 | 29.658 | 263 | 158 | 9 | 35 | 290 | 39 | 281 | 3.56e-16 | 81.6 |
| Msa0586910 | AT3G47200.2 | 29.658 | 263 | 158 | 9 | 35 | 290 | 39 | 281 | 3.56e-16 | 81.6 |
| Msa0586910 | AT3G47250.3 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.82e-16 | 81.6 |
| Msa0586910 | AT3G47250.2 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.82e-16 | 81.6 |
| Msa0586910 | AT3G47250.1 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.82e-16 | 81.6 |
| Msa0586910 | AT3G47210.1 | 34.356 | 163 | 99 | 3 | 35 | 197 | 86 | 240 | 8.08e-16 | 80.5 |
| Msa0586910 | AT4G31980.1 | 27.429 | 175 | 112 | 3 | 42 | 213 | 293 | 455 | 8.22e-16 | 81.3 |
| Msa0586910 | AT4G31980.1 | 29.143 | 175 | 119 | 4 | 375 | 547 | 506 | 677 | 5.81e-12 | 68.9 |
| Msa0586910 | AT2G36430.1 | 24.806 | 258 | 154 | 6 | 38 | 284 | 41 | 269 | 1.43e-15 | 79.7 |
| Msa0586910 | AT5G22550.2 | 29.333 | 225 | 139 | 9 | 34 | 252 | 36 | 246 | 4.45e-15 | 78.6 |
| Msa0586910 | AT5G22550.2 | 26.667 | 180 | 131 | 1 | 374 | 552 | 308 | 487 | 1.48e-12 | 70.5 |
| Msa0586910 | AT5G22560.1 | 25.564 | 266 | 167 | 7 | 11 | 257 | 13 | 266 | 1.74e-13 | 73.6 |
| Msa0586910 | AT5G22560.1 | 26.519 | 181 | 130 | 3 | 374 | 552 | 335 | 514 | 1.13e-11 | 67.8 |
| Msa0586910 | AT5G22550.1 | 26.667 | 180 | 131 | 1 | 374 | 552 | 259 | 438 | 1.74e-12 | 70.1 |
| Msa0586910 | AT5G22540.1 | 27.727 | 220 | 145 | 6 | 35 | 252 | 24 | 231 | 3.69e-12 | 68.9 |
| Msa0586910 | AT5G22540.1 | 26.966 | 178 | 129 | 1 | 376 | 552 | 258 | 435 | 1.36e-11 | 67.4 |
| Msa0586910 | AT2G28580.6 | 25.907 | 193 | 140 | 3 | 356 | 547 | 257 | 447 | 4.11e-11 | 65.9 |
| Msa0586910 | AT2G28580.1 | 25.907 | 193 | 140 | 3 | 356 | 547 | 325 | 515 | 5.07e-11 | 65.9 |
| Msa0586910 | AT2G28580.2 | 25.907 | 193 | 140 | 3 | 356 | 547 | 339 | 529 | 5.61e-11 | 65.9 |
| Msa0586910 | AT2G28580.5 | 25.907 | 193 | 140 | 3 | 356 | 547 | 308 | 498 | 5.76e-11 | 65.5 |
| Msa0586910 | AT2G28580.4 | 25.907 | 193 | 140 | 3 | 356 | 547 | 322 | 512 | 6.91e-11 | 65.5 |
Find 83 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCAAACTCTTCTTCT+AGG | 0.153796 | 4_2:+8412838 | None:intergenic |
| CAACCTTTGATGAGAATCTT+TGG | 0.179806 | 4_2:-8412881 | Msa0586910:CDS |
| TGTTGTGGAACATAAGAATT+TGG | 0.183132 | 4_2:+8412756 | None:intergenic |
| GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 4_2:-8411559 | Msa0586910:CDS |
| AAGCTTTGGCACATTGAAAA+TGG | 0.249135 | 4_2:+8412794 | None:intergenic |
| CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 4_2:-8412787 | Msa0586910:CDS |
| CTTGATATGCTTCCATTTGT+AGG | 0.267254 | 4_2:+8411757 | None:intergenic |
| AGCATGCTACCACAAATTCT+TGG | 0.287384 | 4_2:-8412580 | Msa0586910:CDS |
| CAATTGGTCCCTACCATTAT+TGG | 0.314543 | 4_2:-8412728 | Msa0586910:CDS |
| TCATCTTCCCACAATTAGTT+TGG | 0.323564 | 4_2:-8411704 | Msa0586910:CDS |
| GAAGAGTTTGAGGAGGAAAA+TGG | 0.326776 | 4_2:-8412831 | Msa0586910:CDS |
| TGTTGATATTAATGTGTATA+AGG | 0.328473 | 4_2:-8412293 | Msa0586910:CDS |
| TCAATAGTCTTATCCAAGTA+TGG | 0.342784 | 4_2:+8411451 | None:intergenic |
| AGTCTTATGTGTTTGGTTCT+TGG | 0.346645 | 4_2:-8411372 | Msa0586910:CDS |
| ATCTTTCTCAAAACAAATAA+TGG | 0.347136 | 4_2:+8412360 | None:intergenic |
| TTTGTTCCAACTTTCTCAAT+TGG | 0.347934 | 4_2:+8412610 | None:intergenic |
| TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 4_2:-8411379 | Msa0586910:CDS |
| ATACAATGAAGATCAAGATT+TGG | 0.376198 | 4_2:-8411405 | Msa0586910:CDS |
| GCCTTTGCATGGAATCAAAA+AGG | 0.377556 | 4_2:-8412016 | Msa0586910:CDS |
| CTTTCATGGCATAAAATTGA+AGG | 0.378368 | 4_2:+8412496 | None:intergenic |
| AACCTTTGATGAGAATCTTT+GGG | 0.378384 | 4_2:-8412880 | Msa0586910:CDS |
| TAGAATCTTTGCATCGTTCT+CGG | 0.385581 | 4_2:+8411570 | None:intergenic |
| GTTGAACAACTTGTGATTGC+AGG | 0.386181 | 4_2:-8411793 | Msa0586910:CDS |
| GAGTTTAAAAGGTGTTCAAT+AGG | 0.391781 | 4_2:+8411907 | None:intergenic |
| CTCCTCAAACTCTTCTTCTA+GGG | 0.397644 | 4_2:+8412839 | None:intergenic |
| GTTAATTTCTTACCTACAAA+TGG | 0.403126 | 4_2:-8411769 | Msa0586910:CDS |
| AGAGTTCTTGACGCCAATAA+TGG | 0.405296 | 4_2:+8412715 | None:intergenic |
| ATCGGTTGGATCGGGACCTT+TGG | 0.407115 | 4_2:-8411635 | Msa0586910:CDS |
| TGTTGACCAATTGAGAAAGT+TGG | 0.426632 | 4_2:-8412616 | Msa0586910:CDS |
| ATATCCCTCAAAATTGCATT+AGG | 0.430899 | 4_2:+8412405 | None:intergenic |
| CACTCTAAGACTTGAATGTT+AGG | 0.432592 | 4_2:+8412228 | None:intergenic |
| ATTGTCAAGGGTGCCATACT+TGG | 0.436193 | 4_2:-8411464 | Msa0586910:CDS |
| CACAAATTCTTGGATTTGAA+CGG | 0.444811 | 4_2:-8412570 | Msa0586910:CDS |
| GAAAACATAACCAACCTTCC+AGG | 0.449083 | 4_2:-8411949 | Msa0586910:CDS |
| CGTTCAAATCCAAGAATTTG+TGG | 0.452276 | 4_2:+8412571 | None:intergenic |
| TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 4_2:+8412780 | None:intergenic |
| ATACTCTTCAAACATCTTGA+AGG | 0.456719 | 4_2:+8412251 | None:intergenic |
| AAGCAAAATTAATTTGTGTC+CGG | 0.458518 | 4_2:+8411235 | None:intergenic |
| GTTCCACAACAAGTTGCAAT+TGG | 0.462687 | 4_2:-8412744 | Msa0586910:CDS |
| AACCCTAGAAGAAGAGTTTG+AGG | 0.465593 | 4_2:-8412841 | Msa0586910:CDS |
| TTGCTTTCAAAGTTAATCAA+AGG | 0.473622 | 4_2:-8412039 | Msa0586910:CDS |
| TGCTTTCAAAGTTAATCAAA+GGG | 0.475992 | 4_2:-8412038 | Msa0586910:CDS |
| TATGAATCATCGGTTGGATC+GGG | 0.482387 | 4_2:-8411643 | Msa0586910:CDS |
| GGCACTAGAGCTTACATCTC+CGG | 0.488018 | 4_2:-8411254 | Msa0586910:CDS |
| AAAGAACAAAACACCCTTGG+TGG | 0.493519 | 4_2:-8411836 | Msa0586910:CDS |
| GGACCAATTGCAACTTGTTG+TGG | 0.498583 | 4_2:+8412741 | None:intergenic |
| AGTTGAGATTCAACAAGAAG+TGG | 0.506414 | 4_2:-8412136 | Msa0586910:CDS |
| GGATTTGAACGGCGAAACCT+TGG | 0.522838 | 4_2:-8412559 | Msa0586910:CDS |
| GTTCACATCCAAACTAATTG+TGG | 0.522949 | 4_2:+8411696 | None:intergenic |
| CGTTACACAGAATTGATGAA+TGG | 0.524075 | 4_2:-8411604 | Msa0586910:CDS |
| CTTGGTTGCATATGAATCAT+CGG | 0.528032 | 4_2:-8411653 | Msa0586910:CDS |
| AAGTTTGATTCCTGGAAGGT+TGG | 0.528668 | 4_2:+8411939 | None:intergenic |
| ATATGAATCATCGGTTGGAT+CGG | 0.532054 | 4_2:-8411644 | Msa0586910:CDS |
| TTAATCAAAGGGCCTTTGCA+TGG | 0.532931 | 4_2:-8412027 | Msa0586910:CDS |
| GTTTACAAAATGAGACATGT+TGG | 0.533371 | 4_2:+8412449 | None:intergenic |
| GTTGCATATGAATCATCGGT+TGG | 0.535467 | 4_2:-8411649 | Msa0586910:CDS |
| CACCCAAAGATTCTCATCAA+AGG | 0.543342 | 4_2:+8412878 | None:intergenic |
| AAACTCTCAAAAGAAAGAAG+AGG | 0.550779 | 4_2:-8411890 | Msa0586910:CDS |
| TTCACATCCAAACTAATTGT+GGG | 0.553100 | 4_2:+8411697 | None:intergenic |
| GAAGTGGCTAACATGTGGAA+TGG | 0.555812 | 4_2:-8411505 | Msa0586910:CDS |
| TCTAAAGAACAAAACACCCT+TGG | 0.564159 | 4_2:-8411839 | Msa0586910:CDS |
| TTGAACAACTTGTGATTGCA+GGG | 0.565312 | 4_2:-8411792 | Msa0586910:CDS |
| ATCACAAGTTGTTCAACAGA+AGG | 0.571806 | 4_2:+8411799 | None:intergenic |
| CTTGGATAAGACTATTGAAG+AGG | 0.583268 | 4_2:-8411446 | Msa0586910:CDS |
| TTACAAGTTTGATTCCTGGA+AGG | 0.589208 | 4_2:+8411935 | None:intergenic |
| GAACAAAACACCCTTGGTGG+AGG | 0.589662 | 4_2:-8411833 | Msa0586910:CDS |
| TACTCTTCAAACATCTTGAA+GGG | 0.594471 | 4_2:+8412252 | None:intergenic |
| CAAGAAGTGGATCAACAAGA+AGG | 0.599718 | 4_2:-8412123 | Msa0586910:CDS |
| TTCTTGACGCCAATAATGGT+AGG | 0.599841 | 4_2:+8412719 | None:intergenic |
| TGTCATGAACAAGAGGAAGA+TGG | 0.606762 | 4_2:+8411327 | None:intergenic |
| GCAAGGCTGTCATGAACAAG+AGG | 0.607214 | 4_2:+8411320 | None:intergenic |
| CAAGTCATTGAGATTGTCAA+GGG | 0.609843 | 4_2:-8411476 | Msa0586910:CDS |
| ATAAAGAAGTGGCTAACATG+TGG | 0.611887 | 4_2:-8411510 | Msa0586910:CDS |
| CCTAGAAGAAGAGTTTGAGG+AGG | 0.616622 | 4_2:-8412838 | Msa0586910:CDS |
| GCAAGTCATTGAGATTGTCA+AGG | 0.627588 | 4_2:-8411477 | Msa0586910:CDS |
| ATAGTGATTTCCTCCACCAA+GGG | 0.631478 | 4_2:+8411823 | None:intergenic |
| TCTTGACGCCAATAATGGTA+GGG | 0.634295 | 4_2:+8412720 | None:intergenic |
| ATGTCATCGCTTCTTTGACA+AGG | 0.643036 | 4_2:-8411275 | Msa0586910:CDS |
| GTGTAACGAGTTATAACCAA+AGG | 0.648298 | 4_2:+8411619 | None:intergenic |
| AATAGTGATTTCCTCCACCA+AGG | 0.656034 | 4_2:+8411822 | None:intergenic |
| TGAACGGCGAAACCTTGGTG+TGG | 0.667267 | 4_2:-8412554 | Msa0586910:CDS |
| AACAATCATCATCCACACCA+AGG | 0.684599 | 4_2:+8412542 | None:intergenic |
| TGAACAACTTGTGATTGCAG+GGG | 0.724681 | 4_2:-8411791 | Msa0586910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAGAATTATATGACA+TGG | + | chr4_2:8411265-8411284 | None:intergenic | 20.0% |
| !! | ATCTTTCTCAAAACAAATAA+TGG | + | chr4_2:8411807-8411826 | None:intergenic | 20.0% |
| !! | TGTTGATATTAATGTGTATA+AGG | - | chr4_2:8411871-8411890 | Msa0586910:CDS | 20.0% |
| !! | TACTCAAAAATTTCTTAACA+TGG | + | chr4_2:8412094-8412113 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTGAGTATACTT+TGG | - | chr4_2:8412099-8412118 | Msa0586910:CDS | 20.0% |
| !!! | TGTTTTAGAATTATATGACA+TGG | + | chr4_2:8411265-8411284 | None:intergenic | 20.0% |
| !! | ATCTTTCTCAAAACAAATAA+TGG | + | chr4_2:8411807-8411826 | None:intergenic | 20.0% |
| !! | TGTTGATATTAATGTGTATA+AGG | - | chr4_2:8411871-8411890 | Msa0586910:CDS | 20.0% |
| !! | TACTCAAAAATTTCTTAACA+TGG | + | chr4_2:8412094-8412113 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTGAGTATACTT+TGG | - | chr4_2:8412099-8412118 | Msa0586910:CDS | 20.0% |
| !!! | CTTTTTTGATTCTTCTTTCA+TGG | + | chr4_2:8411685-8411704 | None:intergenic | 25.0% |
| !! | TCTCATTTTGTAAACTATGT+TGG | - | chr4_2:8411723-8411742 | Msa0586910:CDS | 25.0% |
| !! | CTCATTTTGTAAACTATGTT+GGG | - | chr4_2:8411724-8411743 | Msa0586910:CDS | 25.0% |
| !!! | CCATGTTGTTTTTCTAATTT+TGG | + | chr4_2:8411999-8412018 | None:intergenic | 25.0% |
| ! | CCAAAATTAGAAAAACAACA+TGG | - | chr4_2:8411996-8412015 | Msa0586910:CDS | 25.0% |
| ! | CAAAAATTTCTTAACATGGA+TGG | + | chr4_2:8412090-8412109 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAAGTTAATCAA+AGG | - | chr4_2:8412125-8412144 | Msa0586910:CDS | 25.0% |
| ! | TGCTTTCAAAGTTAATCAAA+GGG | - | chr4_2:8412126-8412145 | Msa0586910:CDS | 25.0% |
| !!! | AACTTTTTAAGGACTTTTAG+AGG | + | chr4_2:8412188-8412207 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTGAGAGTTTAAA+AGG | + | chr4_2:8412271-8412290 | None:intergenic | 25.0% |
| ! | GTTAATTTCTTACCTACAAA+TGG | - | chr4_2:8412395-8412414 | Msa0586910:CDS | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | + | chr4_2:8412495-8412514 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | - | chr4_2:8412606-8412625 | Msa0586910:CDS | 25.0% |
| ! | CTTAAAAAGTGATAAAGAAG+TGG | - | chr4_2:8412643-8412662 | Msa0586910:CDS | 25.0% |
| ! | ATACAATGAAGATCAAGATT+TGG | - | chr4_2:8412759-8412778 | Msa0586910:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | - | chr4_2:8412785-8412804 | Msa0586910:CDS | 25.0% |
| !!! | CTTTTTTGATTCTTCTTTCA+TGG | + | chr4_2:8411685-8411704 | None:intergenic | 25.0% |
| !! | TCTCATTTTGTAAACTATGT+TGG | - | chr4_2:8411723-8411742 | Msa0586910:CDS | 25.0% |
| !! | CTCATTTTGTAAACTATGTT+GGG | - | chr4_2:8411724-8411743 | Msa0586910:CDS | 25.0% |
| !!! | CCATGTTGTTTTTCTAATTT+TGG | + | chr4_2:8411999-8412018 | None:intergenic | 25.0% |
| ! | CCAAAATTAGAAAAACAACA+TGG | - | chr4_2:8411996-8412015 | Msa0586910:CDS | 25.0% |
| ! | CAAAAATTTCTTAACATGGA+TGG | + | chr4_2:8412090-8412109 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAAGTTAATCAA+AGG | - | chr4_2:8412125-8412144 | Msa0586910:CDS | 25.0% |
| ! | TGCTTTCAAAGTTAATCAAA+GGG | - | chr4_2:8412126-8412145 | Msa0586910:CDS | 25.0% |
| !!! | AACTTTTTAAGGACTTTTAG+AGG | + | chr4_2:8412188-8412207 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTGAGAGTTTAAA+AGG | + | chr4_2:8412271-8412290 | None:intergenic | 25.0% |
| ! | GTTAATTTCTTACCTACAAA+TGG | - | chr4_2:8412395-8412414 | Msa0586910:CDS | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | + | chr4_2:8412495-8412514 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | - | chr4_2:8412606-8412625 | Msa0586910:CDS | 25.0% |
| ! | CTTAAAAAGTGATAAAGAAG+TGG | - | chr4_2:8412643-8412662 | Msa0586910:CDS | 25.0% |
| ! | ATACAATGAAGATCAAGATT+TGG | - | chr4_2:8412759-8412778 | Msa0586910:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | - | chr4_2:8412785-8412804 | Msa0586910:CDS | 25.0% |
| AACCTTTGATGAGAATCTTT+GGG | - | chr4_2:8411284-8411303 | Msa0586910:CDS | 30.0% | |
| TGTTGTGGAACATAAGAATT+TGG | + | chr4_2:8411411-8411430 | None:intergenic | 30.0% | |
| !! | TGACACTTTGTAGTTGTTTT+TGG | + | chr4_2:8411515-8411534 | None:intergenic | 30.0% |
| TTTGTTCCAACTTTCTCAAT+TGG | + | chr4_2:8411557-8411576 | None:intergenic | 30.0% | |
| CACAAATTCTTGGATTTGAA+CGG | - | chr4_2:8411594-8411613 | Msa0586910:CDS | 30.0% | |
| CTTTCATGGCATAAAATTGA+AGG | + | chr4_2:8411671-8411690 | None:intergenic | 30.0% | |
| GTTTACAAAATGAGACATGT+TGG | + | chr4_2:8411718-8411737 | None:intergenic | 30.0% | |
| ! | ATTTTGTAAACTATGTTGGG+AGG | - | chr4_2:8411727-8411746 | Msa0586910:CDS | 30.0% |
| ! | TATCTCCTAATGCAATTTTG+AGG | - | chr4_2:8411754-8411773 | Msa0586910:CDS | 30.0% |
| ! | ATCTCCTAATGCAATTTTGA+GGG | - | chr4_2:8411755-8411774 | Msa0586910:CDS | 30.0% |
| ATATCCCTCAAAATTGCATT+AGG | + | chr4_2:8411762-8411781 | None:intergenic | 30.0% | |
| TACTCTTCAAACATCTTGAA+GGG | + | chr4_2:8411915-8411934 | None:intergenic | 30.0% | |
| ATACTCTTCAAACATCTTGA+AGG | + | chr4_2:8411916-8411935 | None:intergenic | 30.0% | |
| AAGTCCTTAAAAAGTTACCT+TGG | - | chr4_2:8412192-8412211 | Msa0586910:CDS | 30.0% | |
| AGTCCTTAAAAAGTTACCTT+GGG | - | chr4_2:8412193-8412212 | Msa0586910:CDS | 30.0% | |
| ! | TTTCCCAAGGTAACTTTTTA+AGG | + | chr4_2:8412199-8412218 | None:intergenic | 30.0% |
| ! | TGTTTTACAAGTTTGATTCC+TGG | + | chr4_2:8412236-8412255 | None:intergenic | 30.0% |
| !! | GAGTTTAAAAGGTGTTCAAT+AGG | + | chr4_2:8412260-8412279 | None:intergenic | 30.0% |
| AAACTCTCAAAAGAAAGAAG+AGG | - | chr4_2:8412274-8412293 | Msa0586910:CDS | 30.0% | |
| ! | GTACTAGAGTTTTCATCTTT+TGG | + | chr4_2:8412305-8412324 | None:intergenic | 30.0% |
| TTCACATCCAAACTAATTGT+GGG | + | chr4_2:8412470-8412489 | None:intergenic | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | - | chr4_2:8412493-8412512 | Msa0586910:CDS | 30.0% |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | - | chr4_2:8412605-8412624 | Msa0586910:CDS | 30.0% |
| !! | TCAATAGTCTTATCCAAGTA+TGG | + | chr4_2:8412716-8412735 | None:intergenic | 30.0% |
| ! | TTGGCAGTTTTTAACATTCT+TGG | - | chr4_2:8412811-8412830 | Msa0586910:CDS | 30.0% |
| AACCTTTGATGAGAATCTTT+GGG | - | chr4_2:8411284-8411303 | Msa0586910:CDS | 30.0% | |
| TGTTGTGGAACATAAGAATT+TGG | + | chr4_2:8411411-8411430 | None:intergenic | 30.0% | |
| !! | TGACACTTTGTAGTTGTTTT+TGG | + | chr4_2:8411515-8411534 | None:intergenic | 30.0% |
| TTTGTTCCAACTTTCTCAAT+TGG | + | chr4_2:8411557-8411576 | None:intergenic | 30.0% | |
| CACAAATTCTTGGATTTGAA+CGG | - | chr4_2:8411594-8411613 | Msa0586910:CDS | 30.0% | |
| CTTTCATGGCATAAAATTGA+AGG | + | chr4_2:8411671-8411690 | None:intergenic | 30.0% | |
| GTTTACAAAATGAGACATGT+TGG | + | chr4_2:8411718-8411737 | None:intergenic | 30.0% | |
| ! | ATTTTGTAAACTATGTTGGG+AGG | - | chr4_2:8411727-8411746 | Msa0586910:CDS | 30.0% |
| ! | TATCTCCTAATGCAATTTTG+AGG | - | chr4_2:8411754-8411773 | Msa0586910:CDS | 30.0% |
| ! | ATCTCCTAATGCAATTTTGA+GGG | - | chr4_2:8411755-8411774 | Msa0586910:CDS | 30.0% |
| ATATCCCTCAAAATTGCATT+AGG | + | chr4_2:8411762-8411781 | None:intergenic | 30.0% | |
| TACTCTTCAAACATCTTGAA+GGG | + | chr4_2:8411915-8411934 | None:intergenic | 30.0% | |
| ATACTCTTCAAACATCTTGA+AGG | + | chr4_2:8411916-8411935 | None:intergenic | 30.0% | |
| AAGTCCTTAAAAAGTTACCT+TGG | - | chr4_2:8412192-8412211 | Msa0586910:CDS | 30.0% | |
| AGTCCTTAAAAAGTTACCTT+GGG | - | chr4_2:8412193-8412212 | Msa0586910:CDS | 30.0% | |
| ! | TTTCCCAAGGTAACTTTTTA+AGG | + | chr4_2:8412199-8412218 | None:intergenic | 30.0% |
| ! | TGTTTTACAAGTTTGATTCC+TGG | + | chr4_2:8412236-8412255 | None:intergenic | 30.0% |
| !! | GAGTTTAAAAGGTGTTCAAT+AGG | + | chr4_2:8412260-8412279 | None:intergenic | 30.0% |
| AAACTCTCAAAAGAAAGAAG+AGG | - | chr4_2:8412274-8412293 | Msa0586910:CDS | 30.0% | |
| ! | GTACTAGAGTTTTCATCTTT+TGG | + | chr4_2:8412305-8412324 | None:intergenic | 30.0% |
| TTCACATCCAAACTAATTGT+GGG | + | chr4_2:8412470-8412489 | None:intergenic | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | - | chr4_2:8412493-8412512 | Msa0586910:CDS | 30.0% |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | - | chr4_2:8412605-8412624 | Msa0586910:CDS | 30.0% |
| !! | TCAATAGTCTTATCCAAGTA+TGG | + | chr4_2:8412716-8412735 | None:intergenic | 30.0% |
| ! | TTGGCAGTTTTTAACATTCT+TGG | - | chr4_2:8412811-8412830 | Msa0586910:CDS | 30.0% |
| CAACCTTTGATGAGAATCTT+TGG | - | chr4_2:8411283-8411302 | Msa0586910:CDS | 35.0% | |
| ! | AAGCTTTGGCACATTGAAAA+TGG | + | chr4_2:8411373-8411392 | None:intergenic | 35.0% |
| TGTTGACCAATTGAGAAAGT+TGG | - | chr4_2:8411548-8411567 | Msa0586910:CDS | 35.0% | |
| CGTTCAAATCCAAGAATTTG+TGG | + | chr4_2:8411596-8411615 | None:intergenic | 35.0% | |
| !! | CACTCTAAGACTTGAATGTT+AGG | + | chr4_2:8411939-8411958 | None:intergenic | 35.0% |
| AGTTGAGATTCAACAAGAAG+TGG | - | chr4_2:8412028-8412047 | Msa0586910:CDS | 35.0% | |
| !! | ACCTTTTTGATTCCATGCAA+AGG | + | chr4_2:8412152-8412171 | None:intergenic | 35.0% |
| TTACAAGTTTGATTCCTGGA+AGG | + | chr4_2:8412232-8412251 | None:intergenic | 35.0% | |
| TCTAAAGAACAAAACACCCT+TGG | - | chr4_2:8412325-8412344 | Msa0586910:CDS | 35.0% | |
| ATCACAAGTTGTTCAACAGA+AGG | + | chr4_2:8412368-8412387 | None:intergenic | 35.0% | |
| TTGAACAACTTGTGATTGCA+GGG | - | chr4_2:8412372-8412391 | Msa0586910:CDS | 35.0% | |
| CTTGATATGCTTCCATTTGT+AGG | + | chr4_2:8412410-8412429 | None:intergenic | 35.0% | |
| TCATCTTCCCACAATTAGTT+TGG | - | chr4_2:8412460-8412479 | Msa0586910:CDS | 35.0% | |
| GTTCACATCCAAACTAATTG+TGG | + | chr4_2:8412471-8412490 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | - | chr4_2:8412511-8412530 | Msa0586910:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | - | chr4_2:8412520-8412539 | Msa0586910:CDS | 35.0% |
| GTGTAACGAGTTATAACCAA+AGG | + | chr4_2:8412548-8412567 | None:intergenic | 35.0% | |
| CGTTACACAGAATTGATGAA+TGG | - | chr4_2:8412560-8412579 | Msa0586910:CDS | 35.0% | |
| TAGAATCTTTGCATCGTTCT+CGG | + | chr4_2:8412597-8412616 | None:intergenic | 35.0% | |
| ATAAAGAAGTGGCTAACATG+TGG | - | chr4_2:8412654-8412673 | Msa0586910:CDS | 35.0% | |
| CAAGTCATTGAGATTGTCAA+GGG | - | chr4_2:8412688-8412707 | Msa0586910:CDS | 35.0% | |
| CTTGGATAAGACTATTGAAG+AGG | - | chr4_2:8412718-8412737 | Msa0586910:CDS | 35.0% | |
| !! | AGTCTTATGTGTTTGGTTCT+TGG | - | chr4_2:8412792-8412811 | Msa0586910:CDS | 35.0% |
| CAACCTTTGATGAGAATCTT+TGG | - | chr4_2:8411283-8411302 | Msa0586910:CDS | 35.0% | |
| ! | AAGCTTTGGCACATTGAAAA+TGG | + | chr4_2:8411373-8411392 | None:intergenic | 35.0% |
| TGTTGACCAATTGAGAAAGT+TGG | - | chr4_2:8411548-8411567 | Msa0586910:CDS | 35.0% | |
| CGTTCAAATCCAAGAATTTG+TGG | + | chr4_2:8411596-8411615 | None:intergenic | 35.0% | |
| !! | CACTCTAAGACTTGAATGTT+AGG | + | chr4_2:8411939-8411958 | None:intergenic | 35.0% |
| AGTTGAGATTCAACAAGAAG+TGG | - | chr4_2:8412028-8412047 | Msa0586910:CDS | 35.0% | |
| !! | ACCTTTTTGATTCCATGCAA+AGG | + | chr4_2:8412152-8412171 | None:intergenic | 35.0% |
| TTACAAGTTTGATTCCTGGA+AGG | + | chr4_2:8412232-8412251 | None:intergenic | 35.0% | |
| TCTAAAGAACAAAACACCCT+TGG | - | chr4_2:8412325-8412344 | Msa0586910:CDS | 35.0% | |
| ATCACAAGTTGTTCAACAGA+AGG | + | chr4_2:8412368-8412387 | None:intergenic | 35.0% | |
| TTGAACAACTTGTGATTGCA+GGG | - | chr4_2:8412372-8412391 | Msa0586910:CDS | 35.0% | |
| CTTGATATGCTTCCATTTGT+AGG | + | chr4_2:8412410-8412429 | None:intergenic | 35.0% | |
| TCATCTTCCCACAATTAGTT+TGG | - | chr4_2:8412460-8412479 | Msa0586910:CDS | 35.0% | |
| GTTCACATCCAAACTAATTG+TGG | + | chr4_2:8412471-8412490 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | - | chr4_2:8412511-8412530 | Msa0586910:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | - | chr4_2:8412520-8412539 | Msa0586910:CDS | 35.0% |
| GTGTAACGAGTTATAACCAA+AGG | + | chr4_2:8412548-8412567 | None:intergenic | 35.0% | |
| CGTTACACAGAATTGATGAA+TGG | - | chr4_2:8412560-8412579 | Msa0586910:CDS | 35.0% | |
| TAGAATCTTTGCATCGTTCT+CGG | + | chr4_2:8412597-8412616 | None:intergenic | 35.0% | |
| ATAAAGAAGTGGCTAACATG+TGG | - | chr4_2:8412654-8412673 | Msa0586910:CDS | 35.0% | |
| CAAGTCATTGAGATTGTCAA+GGG | - | chr4_2:8412688-8412707 | Msa0586910:CDS | 35.0% | |
| CTTGGATAAGACTATTGAAG+AGG | - | chr4_2:8412718-8412737 | Msa0586910:CDS | 35.0% | |
| !! | AGTCTTATGTGTTTGGTTCT+TGG | - | chr4_2:8412792-8412811 | Msa0586910:CDS | 35.0% |
| CACCCAAAGATTCTCATCAA+AGG | + | chr4_2:8411289-8411308 | None:intergenic | 40.0% | |
| AACCCTAGAAGAAGAGTTTG+AGG | - | chr4_2:8411323-8411342 | Msa0586910:CDS | 40.0% | |
| CTCCTCAAACTCTTCTTCTA+GGG | + | chr4_2:8411328-8411347 | None:intergenic | 40.0% | |
| GAAGAGTTTGAGGAGGAAAA+TGG | - | chr4_2:8411333-8411352 | Msa0586910:CDS | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | - | chr4_2:8411377-8411396 | Msa0586910:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | + | chr4_2:8411387-8411406 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | - | chr4_2:8411420-8411439 | Msa0586910:CDS | 40.0% | |
| CAATTGGTCCCTACCATTAT+TGG | - | chr4_2:8411436-8411455 | Msa0586910:CDS | 40.0% | |
| TCTTGACGCCAATAATGGTA+GGG | + | chr4_2:8411447-8411466 | None:intergenic | 40.0% | |
| TTCTTGACGCCAATAATGGT+AGG | + | chr4_2:8411448-8411467 | None:intergenic | 40.0% | |
| AGAGTTCTTGACGCCAATAA+TGG | + | chr4_2:8411452-8411471 | None:intergenic | 40.0% | |
| AGCATGCTACCACAAATTCT+TGG | - | chr4_2:8411584-8411603 | Msa0586910:CDS | 40.0% | |
| AACAATCATCATCCACACCA+AGG | + | chr4_2:8411625-8411644 | None:intergenic | 40.0% | |
| CAAGAAGTGGATCAACAAGA+AGG | - | chr4_2:8412041-8412060 | Msa0586910:CDS | 40.0% | |
| TTAATCAAAGGGCCTTTGCA+TGG | - | chr4_2:8412137-8412156 | Msa0586910:CDS | 40.0% | |
| GCCTTTGCATGGAATCAAAA+AGG | - | chr4_2:8412148-8412167 | Msa0586910:CDS | 40.0% | |
| !! | AGGTTGGTTATGTTTTCCCA+AGG | + | chr4_2:8412212-8412231 | None:intergenic | 40.0% |
| GAAAACATAACCAACCTTCC+AGG | - | chr4_2:8412215-8412234 | Msa0586910:CDS | 40.0% | |
| AAGTTTGATTCCTGGAAGGT+TGG | + | chr4_2:8412228-8412247 | None:intergenic | 40.0% | |
| AAAGAACAAAACACCCTTGG+TGG | - | chr4_2:8412328-8412347 | Msa0586910:CDS | 40.0% | |
| ATAGTGATTTCCTCCACCAA+GGG | + | chr4_2:8412344-8412363 | None:intergenic | 40.0% | |
| AATAGTGATTTCCTCCACCA+AGG | + | chr4_2:8412345-8412364 | None:intergenic | 40.0% | |
| GTTGAACAACTTGTGATTGC+AGG | - | chr4_2:8412371-8412390 | Msa0586910:CDS | 40.0% | |
| TGAACAACTTGTGATTGCAG+GGG | - | chr4_2:8412373-8412392 | Msa0586910:CDS | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | - | chr4_2:8412515-8412534 | Msa0586910:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | - | chr4_2:8412521-8412540 | Msa0586910:CDS | 40.0% |
| GCAAGTCATTGAGATTGTCA+AGG | - | chr4_2:8412687-8412706 | Msa0586910:CDS | 40.0% | |
| TGTCATGAACAAGAGGAAGA+TGG | + | chr4_2:8412840-8412859 | None:intergenic | 40.0% | |
| ATGTCATCGCTTCTTTGACA+AGG | - | chr4_2:8412889-8412908 | Msa0586910:CDS | 40.0% | |
| CACCCAAAGATTCTCATCAA+AGG | + | chr4_2:8411289-8411308 | None:intergenic | 40.0% | |
| AACCCTAGAAGAAGAGTTTG+AGG | - | chr4_2:8411323-8411342 | Msa0586910:CDS | 40.0% | |
| CTCCTCAAACTCTTCTTCTA+GGG | + | chr4_2:8411328-8411347 | None:intergenic | 40.0% | |
| GAAGAGTTTGAGGAGGAAAA+TGG | - | chr4_2:8411333-8411352 | Msa0586910:CDS | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | - | chr4_2:8411377-8411396 | Msa0586910:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | + | chr4_2:8411387-8411406 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | - | chr4_2:8411420-8411439 | Msa0586910:CDS | 40.0% | |
| CAATTGGTCCCTACCATTAT+TGG | - | chr4_2:8411436-8411455 | Msa0586910:CDS | 40.0% | |
| TCTTGACGCCAATAATGGTA+GGG | + | chr4_2:8411447-8411466 | None:intergenic | 40.0% | |
| TTCTTGACGCCAATAATGGT+AGG | + | chr4_2:8411448-8411467 | None:intergenic | 40.0% | |
| AGAGTTCTTGACGCCAATAA+TGG | + | chr4_2:8411452-8411471 | None:intergenic | 40.0% | |
| AGCATGCTACCACAAATTCT+TGG | - | chr4_2:8411584-8411603 | Msa0586910:CDS | 40.0% | |
| AACAATCATCATCCACACCA+AGG | + | chr4_2:8411625-8411644 | None:intergenic | 40.0% | |
| CAAGAAGTGGATCAACAAGA+AGG | - | chr4_2:8412041-8412060 | Msa0586910:CDS | 40.0% | |
| TTAATCAAAGGGCCTTTGCA+TGG | - | chr4_2:8412137-8412156 | Msa0586910:CDS | 40.0% | |
| GCCTTTGCATGGAATCAAAA+AGG | - | chr4_2:8412148-8412167 | Msa0586910:CDS | 40.0% | |
| !! | AGGTTGGTTATGTTTTCCCA+AGG | + | chr4_2:8412212-8412231 | None:intergenic | 40.0% |
| GAAAACATAACCAACCTTCC+AGG | - | chr4_2:8412215-8412234 | Msa0586910:CDS | 40.0% | |
| AAGTTTGATTCCTGGAAGGT+TGG | + | chr4_2:8412228-8412247 | None:intergenic | 40.0% | |
| AAAGAACAAAACACCCTTGG+TGG | - | chr4_2:8412328-8412347 | Msa0586910:CDS | 40.0% | |
| ATAGTGATTTCCTCCACCAA+GGG | + | chr4_2:8412344-8412363 | None:intergenic | 40.0% | |
| AATAGTGATTTCCTCCACCA+AGG | + | chr4_2:8412345-8412364 | None:intergenic | 40.0% | |
| GTTGAACAACTTGTGATTGC+AGG | - | chr4_2:8412371-8412390 | Msa0586910:CDS | 40.0% | |
| TGAACAACTTGTGATTGCAG+GGG | - | chr4_2:8412373-8412392 | Msa0586910:CDS | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | - | chr4_2:8412515-8412534 | Msa0586910:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | - | chr4_2:8412521-8412540 | Msa0586910:CDS | 40.0% |
| GCAAGTCATTGAGATTGTCA+AGG | - | chr4_2:8412687-8412706 | Msa0586910:CDS | 40.0% | |
| TGTCATGAACAAGAGGAAGA+TGG | + | chr4_2:8412840-8412859 | None:intergenic | 40.0% | |
| ATGTCATCGCTTCTTTGACA+AGG | - | chr4_2:8412889-8412908 | Msa0586910:CDS | 40.0% | |
| CCTCCTCAAACTCTTCTTCT+AGG | + | chr4_2:8411329-8411348 | None:intergenic | 45.0% | |
| CCTAGAAGAAGAGTTTGAGG+AGG | - | chr4_2:8411326-8411345 | Msa0586910:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | + | chr4_2:8411426-8411445 | None:intergenic | 45.0% |
| GAAGTGGCTAACATGTGGAA+TGG | - | chr4_2:8412659-8412678 | Msa0586910:CDS | 45.0% | |
| !! | ATTGTCAAGGGTGCCATACT+TGG | - | chr4_2:8412700-8412719 | Msa0586910:CDS | 45.0% |
| GACAGAGCAAAAAGCTTGCA+AGG | + | chr4_2:8412864-8412883 | None:intergenic | 45.0% | |
| CCTCCTCAAACTCTTCTTCT+AGG | + | chr4_2:8411329-8411348 | None:intergenic | 45.0% | |
| CCTAGAAGAAGAGTTTGAGG+AGG | - | chr4_2:8411326-8411345 | Msa0586910:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | + | chr4_2:8411426-8411445 | None:intergenic | 45.0% |
| GAAGTGGCTAACATGTGGAA+TGG | - | chr4_2:8412659-8412678 | Msa0586910:CDS | 45.0% | |
| !! | ATTGTCAAGGGTGCCATACT+TGG | - | chr4_2:8412700-8412719 | Msa0586910:CDS | 45.0% |
| GACAGAGCAAAAAGCTTGCA+AGG | + | chr4_2:8412864-8412883 | None:intergenic | 45.0% | |
| GGATTTGAACGGCGAAACCT+TGG | - | chr4_2:8411605-8411624 | Msa0586910:CDS | 50.0% | |
| GAACAAAACACCCTTGGTGG+AGG | - | chr4_2:8412331-8412350 | Msa0586910:CDS | 50.0% | |
| GCAAGGCTGTCATGAACAAG+AGG | + | chr4_2:8412847-8412866 | None:intergenic | 50.0% | |
| GGCACTAGAGCTTACATCTC+CGG | - | chr4_2:8412910-8412929 | Msa0586910:CDS | 50.0% | |
| GGATTTGAACGGCGAAACCT+TGG | - | chr4_2:8411605-8411624 | Msa0586910:CDS | 50.0% | |
| GAACAAAACACCCTTGGTGG+AGG | - | chr4_2:8412331-8412350 | Msa0586910:CDS | 50.0% | |
| GCAAGGCTGTCATGAACAAG+AGG | + | chr4_2:8412847-8412866 | None:intergenic | 50.0% | |
| GGCACTAGAGCTTACATCTC+CGG | - | chr4_2:8412910-8412929 | Msa0586910:CDS | 50.0% | |
| TGAACGGCGAAACCTTGGTG+TGG | - | chr4_2:8411610-8411629 | Msa0586910:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCTT+TGG | - | chr4_2:8412529-8412548 | Msa0586910:CDS | 55.0% | |
| TGAACGGCGAAACCTTGGTG+TGG | - | chr4_2:8411610-8411629 | Msa0586910:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCTT+TGG | - | chr4_2:8412529-8412548 | Msa0586910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8411243 | 8412943 | 8411243 | ID=Msa0586910;Name=Msa0586910 |
| chr4_2 | mRNA | 8411243 | 8412943 | 8411243 | ID=Msa0586910-mRNA-1;Parent=Msa0586910;Name=Msa0586910-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|566 |
| chr4_2 | exon | 8411243 | 8412943 | 8411243 | ID=Msa0586910-mRNA-1:exon:2265;Parent=Msa0586910-mRNA-1 |
| chr4_2 | CDS | 8411243 | 8412943 | 8411243 | ID=Msa0586910-mRNA-1:cds;Parent=Msa0586910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
