Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770580 | sp|Q9C942|CSE_ARATH | 31.940 | 335 | 187 | 5 | 103 | 430 | 24 | 324 | 2.79e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770580 | G7K1K2 | 88.222 | 433 | 13 | 2 | 1 | 433 | 1 | 395 | 0.0 | 769 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007080 | Msa0770580 | 0.806384 | 8.443459e-50 | -8.615850e-47 |
| Msa0626230 | Msa0770580 | 0.808760 | 2.643388e-50 | -8.615850e-47 |
| Msa0626280 | Msa0770580 | 0.827870 | 1.232293e-54 | -8.615850e-47 |
| Msa0658570 | Msa0770580 | 0.825377 | 4.846001e-54 | -8.615850e-47 |
| Msa0696740 | Msa0770580 | 0.804650 | 1.951229e-49 | -8.615850e-47 |
| Msa0696770 | Msa0770580 | 0.800888 | 1.166886e-48 | -8.615850e-47 |
| Msa0703490 | Msa0770580 | 0.827376 | 1.618498e-54 | -8.615850e-47 |
| Msa0715720 | Msa0770580 | 0.842664 | 2.252024e-58 | -8.615850e-47 |
| Msa0730270 | Msa0770580 | 0.881928 | 1.596059e-70 | -8.615850e-47 |
| Msa0754680 | Msa0770580 | 0.823453 | 1.373820e-53 | -8.615850e-47 |
| Msa0770580 | Msa0797350 | 0.831914 | 1.274309e-55 | -8.615850e-47 |
| Msa0770580 | Msa0802470 | -0.826204 | 3.083288e-54 | -8.615850e-47 |
| Msa0770580 | Msa0834860 | 0.814383 | 1.584091e-51 | -8.615850e-47 |
| Msa0770580 | Msa0849330 | 0.894218 | 3.032675e-75 | -8.615850e-47 |
| Msa0770580 | Msa0885010 | 0.817579 | 3.065630e-52 | -8.615850e-47 |
| Msa0770580 | Msa0961460 | 0.819635 | 1.047170e-52 | -8.615850e-47 |
| Msa0770580 | Msa0964130 | 0.813431 | 2.569080e-51 | -8.615850e-47 |
| Msa0770580 | Msa1008490 | 0.812719 | 3.679404e-51 | -8.615850e-47 |
| Msa0770580 | Msa1009000 | 0.820152 | 7.977726e-53 | -8.615850e-47 |
| Msa0770580 | Msa1020710 | 0.809674 | 1.683873e-50 | -8.615850e-47 |
| Msa0770580 | Msa1026500 | 0.810717 | 1.003314e-50 | -8.615850e-47 |
| Msa0770580 | Msa1068200 | -0.831819 | 1.344357e-55 | -8.615850e-47 |
| Msa0770580 | Msa1074570 | 0.819537 | 1.102762e-52 | -8.615850e-47 |
| Msa0770580 | Msa1083410 | 0.819751 | 9.854021e-53 | -8.615850e-47 |
| Msa0770580 | Msa1098560 | 0.818333 | 2.070922e-52 | -8.615850e-47 |
| Msa0770580 | Msa1099030 | 0.802951 | 4.397448e-49 | -8.615850e-47 |
| Msa0770580 | Msa1104000 | 0.813854 | 2.073394e-51 | -8.615850e-47 |
| Msa0770580 | Msa1111760 | 0.814081 | 1.847327e-51 | -8.615850e-47 |
| Msa0770580 | Msa1113200 | 0.800541 | 1.373176e-48 | -8.615850e-47 |
| Msa0770580 | Msa1127770 | 0.800982 | 1.116081e-48 | -8.615850e-47 |
| Msa0770580 | Msa1147570 | 0.809852 | 1.541955e-50 | -8.615850e-47 |
| Msa0770580 | Msa1154070 | 0.806060 | 9.880528e-50 | -8.615850e-47 |
| Msa0770580 | Msa1156340 | -0.817507 | 3.180848e-52 | -8.615850e-47 |
| Msa0770580 | Msa1229600 | 0.833393 | 5.473891e-56 | -8.615850e-47 |
| Msa0770580 | Msa1278840 | 0.833166 | 6.234241e-56 | -8.615850e-47 |
| Msa0770580 | Msa1310210 | 0.828501 | 8.679555e-55 | -8.615850e-47 |
| Msa0770580 | Msa1358870 | -0.813063 | 3.094444e-51 | -8.615850e-47 |
| Msa0770580 | Msa1376890 | 0.823561 | 1.296498e-53 | -8.615850e-47 |
| Msa0770580 | Msa1381940 | 0.803257 | 3.800312e-49 | -8.615850e-47 |
| Msa0770580 | Msa1393410 | 0.851241 | 1.009108e-60 | -8.615850e-47 |
| Msa0770580 | Msa1435420 | 0.849975 | 2.289256e-60 | -8.615850e-47 |
| Msa0770580 | Msa1445790 | 0.804017 | 2.643540e-49 | -8.615850e-47 |
| Msa0770580 | Msa1465900 | 0.804888 | 1.739789e-49 | -8.615850e-47 |
| Msa0124110 | Msa0770580 | 0.804775 | 1.836955e-49 | -8.615850e-47 |
| Msa0141230 | Msa0770580 | 0.804160 | 2.468395e-49 | -8.615850e-47 |
| Msa0170090 | Msa0770580 | 0.812086 | 5.060613e-51 | -8.615850e-47 |
| Msa0217400 | Msa0770580 | 0.831403 | 1.702970e-55 | -8.615850e-47 |
| Msa0233190 | Msa0770580 | 0.805196 | 1.500424e-49 | -8.615850e-47 |
| Msa0430820 | Msa0770580 | 0.809494 | 1.840140e-50 | -8.615850e-47 |
| Msa0448550 | Msa0770580 | -0.832831 | 7.550011e-56 | -8.615850e-47 |
| Msa0458440 | Msa0770580 | 0.808476 | 3.040080e-50 | -8.615850e-47 |
| Msa0465680 | Msa0770580 | -0.808792 | 2.602730e-50 | -8.615850e-47 |
| Msa0245880 | Msa0770580 | 0.816700 | 4.829975e-52 | -8.615850e-47 |
| Msa0256510 | Msa0770580 | 0.820740 | 5.846168e-53 | -8.615850e-47 |
| Msa0257250 | Msa0770580 | 0.808635 | 2.810873e-50 | -8.615850e-47 |
| Msa0296560 | Msa0770580 | 0.803921 | 2.767459e-49 | -8.615850e-47 |
| Msa0304740 | Msa0770580 | 0.808939 | 2.420515e-50 | -8.615850e-47 |
| Msa0311580 | Msa0770580 | 0.810506 | 1.114091e-50 | -8.615850e-47 |
| Msa0331590 | Msa0770580 | 0.801884 | 7.293204e-49 | -8.615850e-47 |
| Msa0331920 | Msa0770580 | 0.829702 | 4.439581e-55 | -8.615850e-47 |
| Msa0335040 | Msa0770580 | 0.826016 | 3.419265e-54 | -8.615850e-47 |
| Msa0356890 | Msa0770580 | -0.833814 | 4.296329e-56 | -8.615850e-47 |
| Msa0362740 | Msa0770580 | 0.820608 | 6.268303e-53 | -8.615850e-47 |
| Msa0492880 | Msa0770580 | 0.828906 | 6.928807e-55 | -8.615850e-47 |
| Msa0524890 | Msa0770580 | -0.807799 | 4.236569e-50 | -8.615850e-47 |
| Msa0564510 | Msa0770580 | 0.807603 | 4.663405e-50 | -8.615850e-47 |
| Msa0567020 | Msa0770580 | 0.832119 | 1.134033e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770580 | MtrunA17_Chr5g0423541 | 88.222 | 433 | 13 | 2 | 1 | 433 | 1 | 395 | 0.0 | 769 |
| Msa0770580 | MtrunA17_Chr1g0209741 | 62.818 | 433 | 105 | 6 | 1 | 431 | 1 | 379 | 0.0 | 549 |
| Msa0770580 | MtrunA17_Chr7g0215451 | 52.575 | 369 | 136 | 3 | 59 | 427 | 7 | 336 | 5.61e-134 | 389 |
| Msa0770580 | MtrunA17_Chr6g0457581 | 49.326 | 371 | 149 | 3 | 59 | 429 | 6 | 337 | 1.42e-128 | 375 |
| Msa0770580 | MtrunA17_Chr6g0460121 | 52.698 | 315 | 115 | 2 | 115 | 429 | 20 | 300 | 1.64e-119 | 350 |
| Msa0770580 | MtrunA17_Chr6g0484431 | 46.965 | 313 | 126 | 4 | 57 | 368 | 8 | 281 | 3.47e-102 | 305 |
| Msa0770580 | MtrunA17_Chr1g0212901 | 40.123 | 324 | 160 | 2 | 108 | 431 | 6 | 295 | 5.51e-85 | 263 |
| Msa0770580 | MtrunA17_Chr1g0195501 | 40.952 | 315 | 152 | 2 | 115 | 429 | 11 | 291 | 3.83e-81 | 253 |
| Msa0770580 | MtrunA17_Chr7g0269371 | 38.750 | 320 | 161 | 2 | 108 | 427 | 4 | 288 | 1.31e-77 | 244 |
| Msa0770580 | MtrunA17_Chr4g0047891 | 35.048 | 311 | 169 | 1 | 120 | 430 | 47 | 324 | 2.04e-64 | 210 |
| Msa0770580 | MtrunA17_Chr4g0071671 | 32.836 | 335 | 184 | 5 | 103 | 430 | 15 | 315 | 2.87e-51 | 175 |
| Msa0770580 | MtrunA17_Chr1g0199771 | 30.547 | 311 | 179 | 5 | 118 | 426 | 37 | 312 | 2.32e-46 | 162 |
| Msa0770580 | MtrunA17_Chr3g0140391 | 28.617 | 311 | 179 | 8 | 120 | 429 | 103 | 371 | 1.82e-31 | 124 |
| Msa0770580 | MtrunA17_Chr6g0479331 | 29.969 | 327 | 166 | 10 | 114 | 429 | 116 | 390 | 7.35e-29 | 116 |
| Msa0770580 | MtrunA17_Chr1g0209761 | 67.143 | 70 | 23 | 0 | 362 | 431 | 12 | 81 | 4.87e-26 | 100 |
| Msa0770580 | MtrunA17_Chr6g0484421 | 53.846 | 65 | 30 | 0 | 369 | 433 | 1 | 65 | 4.12e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770580 | AT1G77420.1 | 57.254 | 386 | 127 | 2 | 48 | 433 | 35 | 382 | 2.84e-160 | 457 |
| Msa0770580 | AT5G16120.3 | 54.223 | 367 | 129 | 3 | 61 | 427 | 10 | 337 | 7.50e-139 | 402 |
| Msa0770580 | AT5G16120.1 | 54.223 | 367 | 129 | 3 | 61 | 427 | 10 | 337 | 7.50e-139 | 402 |
| Msa0770580 | AT5G16120.4 | 54.223 | 367 | 129 | 3 | 61 | 427 | 42 | 369 | 1.08e-138 | 402 |
| Msa0770580 | AT5G16120.2 | 54.223 | 367 | 129 | 3 | 61 | 427 | 28 | 355 | 1.13e-138 | 402 |
| Msa0770580 | AT2G39410.2 | 40.673 | 327 | 160 | 2 | 103 | 429 | 2 | 294 | 2.51e-83 | 258 |
| Msa0770580 | AT2G39420.1 | 40.798 | 326 | 159 | 2 | 106 | 431 | 5 | 296 | 2.79e-83 | 258 |
| Msa0770580 | AT3G62860.1 | 40.000 | 315 | 154 | 2 | 115 | 429 | 12 | 291 | 1.15e-79 | 250 |
| Msa0770580 | AT2G47630.1 | 39.329 | 328 | 166 | 1 | 104 | 431 | 1 | 295 | 1.74e-79 | 250 |
| Msa0770580 | AT3G55180.1 | 40.566 | 318 | 156 | 1 | 115 | 432 | 8 | 292 | 5.36e-78 | 244 |
| Msa0770580 | AT2G39400.1 | 41.083 | 314 | 151 | 2 | 118 | 431 | 11 | 290 | 5.43e-78 | 244 |
| Msa0770580 | AT1G11090.1 | 39.744 | 312 | 155 | 1 | 120 | 431 | 38 | 316 | 1.17e-73 | 234 |
| Msa0770580 | AT3G55190.1 | 36.196 | 326 | 173 | 3 | 108 | 432 | 7 | 298 | 7.36e-69 | 221 |
| Msa0770580 | AT3G62860.2 | 39.427 | 279 | 136 | 1 | 151 | 429 | 3 | 248 | 8.22e-68 | 218 |
| Msa0770580 | AT2G47630.2 | 38.790 | 281 | 139 | 1 | 151 | 431 | 3 | 250 | 1.26e-62 | 205 |
| Msa0770580 | AT2G47630.3 | 39.852 | 271 | 130 | 1 | 161 | 431 | 33 | 270 | 3.59e-62 | 204 |
| Msa0770580 | AT1G52760.1 | 31.940 | 335 | 187 | 5 | 103 | 430 | 24 | 324 | 2.83e-52 | 179 |
| Msa0770580 | AT2G39400.2 | 38.776 | 245 | 116 | 2 | 118 | 362 | 11 | 221 | 5.46e-52 | 175 |
| Msa0770580 | AT5G14980.1 | 29.573 | 328 | 195 | 4 | 107 | 433 | 27 | 319 | 6.16e-49 | 170 |
| Msa0770580 | AT5G19290.1 | 29.573 | 328 | 196 | 3 | 107 | 433 | 27 | 320 | 2.01e-47 | 166 |
| Msa0770580 | AT5G11650.1 | 28.169 | 355 | 207 | 11 | 79 | 429 | 68 | 378 | 2.00e-29 | 119 |
| Msa0770580 | AT1G73480.1 | 27.796 | 313 | 181 | 8 | 120 | 430 | 194 | 463 | 3.02e-28 | 116 |
| Msa0770580 | AT1G18360.1 | 28.025 | 314 | 180 | 9 | 120 | 430 | 112 | 382 | 1.12e-26 | 110 |
| Msa0770580 | AT2G39410.1 | 43.396 | 106 | 59 | 1 | 104 | 209 | 3 | 107 | 2.88e-26 | 103 |
| Msa0770580 | AT5G11650.2 | 37.398 | 123 | 71 | 5 | 108 | 230 | 100 | 216 | 2.04e-14 | 73.9 |
Find 89 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5_2:+41581033 | Msa0770580:CDS |
| CTTCAAAGGGTTGTTGTAAA+TGG | 0.149456 | 5_2:-41580825 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5_2:+41584431 | Msa0770580:CDS |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5_2:+41584366 | Msa0770580:CDS |
| CGATCCCTTTACATGAAGTT+TGG | 0.258584 | 5_2:+41582942 | Msa0770580:CDS |
| GCTATGGACTATCCAGGTTT+TGG | 0.259890 | 5_2:+41582008 | Msa0770580:CDS |
| ATTCTTCCCATTTCCTCTTC+TGG | 0.265727 | 5_2:-41582971 | None:intergenic |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5_2:+41584256 | Msa0770580:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5_2:-41584301 | None:intergenic |
| ACTTTAAAGCTCTATGAAAA+TGG | 0.295246 | 5_2:+41584349 | Msa0770580:CDS |
| TTCTTCCCATTTCCTCTTCT+GGG | 0.313438 | 5_2:-41582970 | None:intergenic |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5_2:+41582415 | Msa0770580:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5_2:+41582092 | Msa0770580:CDS |
| CCCACTAAGTTTATTGATCA+TGG | 0.332184 | 5_2:+41580742 | Msa0770580:exon |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5_2:-41583366 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5_2:+41583386 | Msa0770580:CDS |
| AATAAACTTAGTGGGATATC+AGG | 0.347666 | 5_2:-41580734 | None:intergenic |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5_2:+41583416 | Msa0770580:CDS |
| TCATCTTTCTAAGTCATTCT+CGG | 0.367783 | 5_2:+41584492 | Msa0770580:three_prime_UTR |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5_2:-41583384 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.377141 | 5_2:+41581699 | Msa0770580:CDS |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5_2:-41582426 | None:intergenic |
| TTAGTTCCTTGTAATATGTA+AGG | 0.390594 | 5_2:+41582908 | Msa0770580:intron |
| GGGTGGGGCAGTTTCGCTTA+AGG | 0.392851 | 5_2:+41582389 | Msa0770580:CDS |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5_2:-41583383 | None:intergenic |
| TTCAAAGGGTTGTTGTAAAT+GGG | 0.394755 | 5_2:-41580824 | None:intergenic |
| TCGACAAGATCATCGAAGTT+TGG | 0.400778 | 5_2:-41582059 | None:intergenic |
| CATGATCGGAAGTTCCAAAA+TGG | 0.402850 | 5_2:-41580549 | None:intergenic |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5_2:+41582416 | Msa0770580:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5_2:-41582345 | None:intergenic |
| GATCCCTTTACATGAAGTTT+GGG | 0.412991 | 5_2:+41582943 | Msa0770580:CDS |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5_2:-41580926 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5_2:+41581972 | Msa0770580:CDS |
| AGGATGTTAAGTTCTTTGAT+TGG | 0.415918 | 5_2:-41580787 | None:intergenic |
| AGTTCTGTTGGGACAGTCAA+TGG | 0.418351 | 5_2:+41582368 | Msa0770580:CDS |
| TTCGCTTAAGGTTTATTTGA+AGG | 0.418582 | 5_2:+41582401 | Msa0770580:CDS |
| AGAATGCTTTAGTGATGATC+TGG | 0.422433 | 5_2:+41582989 | Msa0770580:CDS |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5_2:-41583321 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5_2:+41581596 | Msa0770580:CDS |
| AAATACACAGATGCCTTGAT+TGG | 0.442711 | 5_2:-41581657 | None:intergenic |
| AAACCCAAACTTCATGTAAA+GGG | 0.451047 | 5_2:-41582946 | None:intergenic |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5_2:-41584259 | None:intergenic |
| AGGGTAATTGATTCTTCAAA+GGG | 0.459828 | 5_2:-41580838 | None:intergenic |
| TCCATGATCAATAAACTTAG+TGG | 0.468452 | 5_2:-41580743 | None:intergenic |
| TCGTAACAAATAACATTGTA+AGG | 0.471754 | 5_2:-41583867 | None:intergenic |
| AAGGGTAATTGATTCTTCAA+AGG | 0.472924 | 5_2:-41580839 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.476747 | 5_2:+41581630 | Msa0770580:CDS |
| CTGTTGGGACAGTCAATGGG+TGG | 0.480192 | 5_2:+41582372 | Msa0770580:CDS |
| GATAATCCACGACTTAAAAC+AGG | 0.483138 | 5_2:+41583891 | Msa0770580:CDS |
| GTTGGGACAGTCAATGGGTG+GGG | 0.483592 | 5_2:+41582374 | Msa0770580:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5_2:-41580973 | None:intergenic |
| AGAATTACCTCGAGTTCTGT+TGG | 0.487343 | 5_2:+41582356 | Msa0770580:CDS |
| GAATTACCTCGAGTTCTGTT+GGG | 0.487693 | 5_2:+41582357 | Msa0770580:CDS |
| AAAACCCAAACTTCATGTAA+AGG | 0.492647 | 5_2:-41582947 | None:intergenic |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5_2:-41581642 | None:intergenic |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5_2:+41580914 | Msa0770580:CDS |
| CGAAGACCTTACATATTACA+AGG | 0.514651 | 5_2:-41582914 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5_2:+41581580 | Msa0770580:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5_2:-41581425 | None:intergenic |
| CCTTCTGAAAGTCCAAAACC+TGG | 0.522547 | 5_2:-41582020 | None:intergenic |
| TGTTGGGACAGTCAATGGGT+GGG | 0.525935 | 5_2:+41582373 | Msa0770580:CDS |
| AGAATGACTTAGAAAGATGA+AGG | 0.530269 | 5_2:-41584489 | None:intergenic |
| TTGTTGTAAATGGGAGAGAA+AGG | 0.534571 | 5_2:-41580815 | None:intergenic |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5_2:+41581973 | Msa0770580:CDS |
| GTTCTGTTGGGACAGTCAAT+GGG | 0.540122 | 5_2:+41582369 | Msa0770580:CDS |
| AATGGGAGAGAAAGGTATGA+AGG | 0.551833 | 5_2:-41580807 | None:intergenic |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5_2:+41583941 | Msa0770580:CDS |
| TCAATGAAATGAAAGAGCTA+TGG | 0.555141 | 5_2:-41580574 | None:intergenic |
| GGACTTTCAGAAGGATTGCA+TGG | 0.558308 | 5_2:+41582029 | Msa0770580:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5_2:+41583317 | Msa0770580:CDS |
| AAGATGAAGGAAATATTCCA+TGG | 0.562857 | 5_2:-41584476 | None:intergenic |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5_2:-41582459 | None:intergenic |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5_2:+41581644 | Msa0770580:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5_2:+41584270 | Msa0770580:CDS |
| ATGTTCACATATCACAATGA+AGG | 0.579876 | 5_2:-41584609 | None:intergenic |
| TCCACGACTTAAAACAGGCA+TGG | 0.581144 | 5_2:+41583896 | Msa0770580:CDS |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5_2:+41581590 | Msa0770580:intron |
| AAAGAGCTATGGTCCATGAT+CGG | 0.594161 | 5_2:-41580563 | None:intergenic |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5_2:-41583395 | None:intergenic |
| CCATGATCAATAAACTTAGT+GGG | 0.608766 | 5_2:-41580742 | None:intergenic |
| TACATGATGACATTGTCTCA+TGG | 0.609492 | 5_2:+41584419 | Msa0770580:CDS |
| CAAACTTCATGTAAAGGGAT+CGG | 0.613457 | 5_2:-41582941 | None:intergenic |
| AATGCACAAATTGAAACTGA+AGG | 0.615703 | 5_2:-41584684 | None:intergenic |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5_2:+41581589 | Msa0770580:intron |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5_2:+41581591 | Msa0770580:CDS |
| GACTGTCCCAACAGAACTCG+AGG | 0.633406 | 5_2:-41582363 | None:intergenic |
| TTACAATGTTATTTGTTACG+AGG | 0.659216 | 5_2:+41583869 | Msa0770580:CDS |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5_2:-41583318 | None:intergenic |
| GTTCCCCTTCCAAAATGCAG+TGG | 0.684497 | 5_2:-41584375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATATAATTATATGTAT+CGG | - | chr5_2:41581237-41581256 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAACTCCA+AGG | - | chr5_2:41581121-41581140 | None:intergenic | 15.0% |
| !! | TTTATAAGTAAATGTTAGTT+TGG | + | chr5_2:41581136-41581155 | Msa0770580:intron | 15.0% |
| !! | ACACAAAATAAAATAGAAAT+GGG | - | chr5_2:41581341-41581360 | None:intergenic | 15.0% |
| !! | TACACAAAATAAAATAGAAA+TGG | - | chr5_2:41581342-41581361 | None:intergenic | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | - | chr5_2:41581470-41581489 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | + | chr5_2:41581521-41581540 | Msa0770580:intron | 15.0% |
| !!! | TGAAAATGTTTCTTTTATAA+TGG | + | chr5_2:41581790-41581809 | Msa0770580:intron | 15.0% |
| !! | TAAAAAATCAAAAAGTGAAT+AGG | - | chr5_2:41581942-41581961 | None:intergenic | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | - | chr5_2:41582200-41582219 | None:intergenic | 15.0% |
| !! | ATTAAACATAATGGTATTAT+TGG | + | chr5_2:41582596-41582615 | Msa0770580:intron | 15.0% |
| !!! | AAAAAACAATGAATTTTGTA+TGG | + | chr5_2:41584209-41584228 | Msa0770580:intron | 15.0% |
| !!! | ATTATTTTTGCAATTCAATT+TGG | + | chr5_2:41584566-41584585 | Msa0770580:intron | 15.0% |
| !!! | TTATTTTTGCAATTCAATTT+GGG | + | chr5_2:41584567-41584586 | Msa0770580:intron | 15.0% |
| !!! | ATTTCTTTGTGCAAAATTTT+AGG | + | chr5_2:41580625-41580644 | Msa0770580:intron | 20.0% |
| !!! | TTATTGAGTTTTGTTGTAAA+GGG | - | chr5_2:41580860-41580879 | None:intergenic | 20.0% |
| !!! | ATTATTGAGTTTTGTTGTAA+AGG | - | chr5_2:41580861-41580880 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | + | chr5_2:41581571-41581590 | Msa0770580:intron | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+TGG | + | chr5_2:41581877-41581896 | Msa0770580:intron | 20.0% |
| !!! | TTTGAAGTTTCTTAAAAGTT+GGG | + | chr5_2:41581878-41581897 | Msa0770580:intron | 20.0% |
| !!! | CACTTTTTGATTTTTTATTC+AGG | + | chr5_2:41581945-41581964 | Msa0770580:intron | 20.0% |
| !! | AAACAATAATTTAGTGATCA+TGG | - | chr5_2:41582556-41582575 | None:intergenic | 20.0% |
| !! | AGAGTCTATATTAAACATAA+TGG | + | chr5_2:41582587-41582606 | Msa0770580:intron | 20.0% |
| !! | TTATAAATGCATATTATGAC+CGG | - | chr5_2:41583092-41583111 | None:intergenic | 20.0% |
| !! | TAAAATAATCTGATACATCT+CGG | - | chr5_2:41583172-41583191 | None:intergenic | 20.0% |
| !! | ATCCTAATGTTATTCTTTAT+AGG | + | chr5_2:41583842-41583861 | Msa0770580:intron | 20.0% |
| !! | ACATCAAAAGAAAGTAAAAA+AGG | - | chr5_2:41583994-41584013 | None:intergenic | 20.0% |
| !! | ATTGCAAAAATAATGTAGTT+AGG | - | chr5_2:41584560-41584579 | None:intergenic | 20.0% |
| !!! | CAATATTTTTTCATCTTTAG+AGG | + | chr5_2:41584634-41584653 | Msa0770580:three_prime_UTR | 20.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | - | chr5_2:41580976-41580995 | None:intergenic | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | + | chr5_2:41580978-41580997 | Msa0770580:CDS | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | + | chr5_2:41580979-41580998 | Msa0770580:CDS | 25.0% |
| ! | AAAATAAAAAACTCCAAGGA+TGG | - | chr5_2:41581117-41581136 | None:intergenic | 25.0% |
| !! | ATAATTATATGTATCGGTGT+CGG | - | chr5_2:41581231-41581250 | None:intergenic | 25.0% |
| !! | GTTTCTTTTATAATGGTCTT+TGG | + | chr5_2:41581797-41581816 | Msa0770580:intron | 25.0% |
| ! | TCTTTGGATGTTTGTTTATA+GGG | + | chr5_2:41581813-41581832 | Msa0770580:intron | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | + | chr5_2:41581843-41581862 | Msa0770580:intron | 25.0% |
| ! | TTGAAGTTTCTTAAAAGTTG+GGG | + | chr5_2:41581879-41581898 | Msa0770580:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | + | chr5_2:41582092-41582111 | Msa0770580:CDS | 25.0% |
| ! | TAATCTGTTTGCTTATTAAC+TGG | + | chr5_2:41582661-41582680 | Msa0770580:intron | 25.0% |
| ! | ATTAATCTATACCTCTGTTA+AGG | + | chr5_2:41582688-41582707 | Msa0770580:intron | 25.0% |
| ! | TTAGTTCCTTGTAATATGTA+AGG | + | chr5_2:41582908-41582927 | Msa0770580:intron | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | - | chr5_2:41583423-41583442 | None:intergenic | 25.0% |
| ! | TTGTAGTTAAACTACAGATA+TGG | - | chr5_2:41583633-41583652 | None:intergenic | 25.0% |
| ! | AGCCTATAAAGAATAACATT+AGG | - | chr5_2:41583847-41583866 | None:intergenic | 25.0% |
| ! | TCGTAACAAATAACATTGTA+AGG | - | chr5_2:41583870-41583889 | None:intergenic | 25.0% |
| !! | TTACAATGTTATTTGTTACG+AGG | + | chr5_2:41583869-41583888 | Msa0770580:CDS | 25.0% |
| !!! | TGATTTGCTCAATTTATTAG+CGG | + | chr5_2:41584108-41584127 | Msa0770580:intron | 25.0% |
| !! | ATGAATTTTGTATGGTTGAT+TGG | + | chr5_2:41584217-41584236 | Msa0770580:intron | 25.0% |
| !! | TGAATTTTGTATGGTTGATT+GGG | + | chr5_2:41584218-41584237 | Msa0770580:intron | 25.0% |
| !!! | ACTTTAAAGCTCTATGAAAA+TGG | + | chr5_2:41584349-41584368 | Msa0770580:CDS | 25.0% |
| TCAATGAAATGAAAGAGCTA+TGG | - | chr5_2:41580577-41580596 | None:intergenic | 30.0% | |
| AATAAACTTAGTGGGATATC+AGG | - | chr5_2:41580737-41580756 | None:intergenic | 30.0% | |
| CCATGATCAATAAACTTAGT+GGG | - | chr5_2:41580745-41580764 | None:intergenic | 30.0% | |
| TCCATGATCAATAAACTTAG+TGG | - | chr5_2:41580746-41580765 | None:intergenic | 30.0% | |
| AGGATGTTAAGTTCTTTGAT+TGG | - | chr5_2:41580790-41580809 | None:intergenic | 30.0% | |
| TTCAAAGGGTTGTTGTAAAT+GGG | - | chr5_2:41580827-41580846 | None:intergenic | 30.0% | |
| ! | AGGGTAATTGATTCTTCAAA+GGG | - | chr5_2:41580841-41580860 | None:intergenic | 30.0% |
| ! | AAGGGTAATTGATTCTTCAA+AGG | - | chr5_2:41580842-41580861 | None:intergenic | 30.0% |
| !!! | ACTGTTAGTTTTGTTGTCTT+TGG | - | chr5_2:41580887-41580906 | None:intergenic | 30.0% |
| ATTGTTTATGTTTCCATCCT+TGG | + | chr5_2:41581101-41581120 | Msa0770580:intron | 30.0% | |
| GTCAACGCTGATAATAATTT+AGG | - | chr5_2:41581272-41581291 | None:intergenic | 30.0% | |
| TGATTCTTCAACAAAGCTAT+AGG | - | chr5_2:41581365-41581384 | None:intergenic | 30.0% | |
| !! | TTCTTTGATCTGTTTTTCCT+AGG | + | chr5_2:41581397-41581416 | Msa0770580:intron | 30.0% |
| TTGTTAAGTAGTGGTATGAA+AGG | + | chr5_2:41581580-41581599 | Msa0770580:intron | 30.0% | |
| !! | GTGTATTTTTGTCATGGATA+TGG | + | chr5_2:41581672-41581691 | Msa0770580:CDS | 30.0% |
| TCTATGTTATCAGACAACAT+AGG | + | chr5_2:41581731-41581750 | Msa0770580:intron | 30.0% | |
| GTCTTTGGATGTTTGTTTAT+AGG | + | chr5_2:41581812-41581831 | Msa0770580:intron | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | + | chr5_2:41581842-41581861 | Msa0770580:intron | 30.0% | |
| TGAAGTTTCTTAAAAGTTGG+GGG | + | chr5_2:41581880-41581899 | Msa0770580:intron | 30.0% | |
| TTCGCTTAAGGTTTATTTGA+AGG | + | chr5_2:41582401-41582420 | Msa0770580:CDS | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | - | chr5_2:41582462-41582481 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | - | chr5_2:41582502-41582521 | None:intergenic | 30.0% | |
| CTCAAAAGTCATACTGTTAT+AGG | + | chr5_2:41582636-41582655 | Msa0770580:intron | 30.0% | |
| GTCATAATTTGAATGCTAAG+TGG | + | chr5_2:41582716-41582735 | Msa0770580:intron | 30.0% | |
| GTTCAACTTTCCTATAGATT+GGG | - | chr5_2:41582742-41582761 | None:intergenic | 30.0% | |
| AGTTCAACTTTCCTATAGAT+TGG | - | chr5_2:41582743-41582762 | None:intergenic | 30.0% | |
| GTCATGCTTTCTATGAAATA+AGG | - | chr5_2:41582849-41582868 | None:intergenic | 30.0% | |
| AAGAGGTCAAATATGTTTGT+TGG | + | chr5_2:41582878-41582897 | Msa0770580:intron | 30.0% | |
| AAACCCAAACTTCATGTAAA+GGG | - | chr5_2:41582949-41582968 | None:intergenic | 30.0% | |
| AAAACCCAAACTTCATGTAA+AGG | - | chr5_2:41582950-41582969 | None:intergenic | 30.0% | |
| CTGATACGTCACAATTTAAA+GGG | - | chr5_2:41583224-41583243 | None:intergenic | 30.0% | |
| ACTGATACGTCACAATTTAA+AGG | - | chr5_2:41583225-41583244 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | + | chr5_2:41583416-41583435 | Msa0770580:CDS | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | - | chr5_2:41583472-41583491 | None:intergenic | 30.0% | |
| ATATTTAGTGCAACACGTAA+AGG | - | chr5_2:41583672-41583691 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | + | chr5_2:41583941-41583960 | Msa0770580:CDS | 30.0% | |
| ! | TACAGAAATTTGCTCACTAA+TGG | - | chr5_2:41584304-41584323 | None:intergenic | 30.0% |
| ! | ACAGCTTTTATTCTATCATC+AGG | - | chr5_2:41584400-41584419 | None:intergenic | 30.0% |
| AAGATGAAGGAAATATTCCA+TGG | - | chr5_2:41584479-41584498 | None:intergenic | 30.0% | |
| AGAATGACTTAGAAAGATGA+AGG | - | chr5_2:41584492-41584511 | None:intergenic | 30.0% | |
| TCATCTTTCTAAGTCATTCT+CGG | + | chr5_2:41584492-41584511 | Msa0770580:three_prime_UTR | 30.0% | |
| GCAAAAATAATGTAGTTAGG+AGG | - | chr5_2:41584557-41584576 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATTCAATTTGGG+TGG | + | chr5_2:41584570-41584589 | Msa0770580:intron | 30.0% |
| ATGTTCACATATCACAATGA+AGG | - | chr5_2:41584612-41584631 | None:intergenic | 30.0% | |
| AATGCACAAATTGAAACTGA+AGG | - | chr5_2:41584687-41584706 | None:intergenic | 30.0% | |
| CCCACTAAGTTTATTGATCA+TGG | + | chr5_2:41580742-41580761 | Msa0770580:exon | 35.0% | |
| TTGTTGTAAATGGGAGAGAA+AGG | - | chr5_2:41580818-41580837 | None:intergenic | 35.0% | |
| CTTCAAAGGGTTGTTGTAAA+TGG | - | chr5_2:41580828-41580847 | None:intergenic | 35.0% | |
| !! | AAGAGAAAAGCACCAATTGA+AGG | + | chr5_2:41580914-41580933 | Msa0770580:CDS | 35.0% |
| GCTTGATCATTGCTTGTTTA+AGG | + | chr5_2:41581033-41581052 | Msa0770580:CDS | 35.0% | |
| ! | TTTTCATCTTGACCAATGTC+AGG | + | chr5_2:41581072-41581091 | Msa0770580:intron | 35.0% |
| !!! | TGGAAATTTTTTGCAAGAGC+TGG | + | chr5_2:41581616-41581635 | Msa0770580:CDS | 35.0% |
| AAATACACAGATGCCTTGAT+TGG | - | chr5_2:41581660-41581679 | None:intergenic | 35.0% | |
| !! | GCATCTGTGTATTTTTGTCA+TGG | + | chr5_2:41581666-41581685 | Msa0770580:CDS | 35.0% |
| ACATGCACATTCTTCTTTGA+AGG | + | chr5_2:41581699-41581718 | Msa0770580:CDS | 35.0% | |
| GAAGTTTCTTAAAAGTTGGG+GGG | + | chr5_2:41581881-41581900 | Msa0770580:intron | 35.0% | |
| AAGTTTCTTAAAAGTTGGGG+GGG | + | chr5_2:41581882-41581901 | Msa0770580:intron | 35.0% | |
| TCGACGAAAGTTACAATTTC+AGG | + | chr5_2:41581908-41581927 | Msa0770580:intron | 35.0% | |
| CGACGAAAGTTACAATTTCA+GGG | + | chr5_2:41581909-41581928 | Msa0770580:intron | 35.0% | |
| GACGAAAGTTACAATTTCAG+GGG | + | chr5_2:41581910-41581929 | Msa0770580:intron | 35.0% | |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | + | chr5_2:41581955-41581974 | Msa0770580:intron | 35.0% |
| ! | ATGAGTCAGTTTCAAGTGTA+GGG | - | chr5_2:41582174-41582193 | None:intergenic | 35.0% |
| ! | TATGAGTCAGTTTCAAGTGT+AGG | - | chr5_2:41582175-41582194 | None:intergenic | 35.0% |
| ATTTGAAGGAGCCAGATAAT+TGG | + | chr5_2:41582415-41582434 | Msa0770580:CDS | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | + | chr5_2:41582416-41582435 | Msa0770580:CDS | 35.0% | |
| ! | CATTGGTAACAATACAAACG+AGG | - | chr5_2:41582485-41582504 | None:intergenic | 35.0% |
| TATGACAAAGTCCTTAACAG+AGG | - | chr5_2:41582702-41582721 | None:intergenic | 35.0% | |
| ATCATGTGAGATTTGATACG+TGG | + | chr5_2:41582770-41582789 | Msa0770580:intron | 35.0% | |
| TCATGTGAGATTTGATACGT+GGG | + | chr5_2:41582771-41582790 | Msa0770580:intron | 35.0% | |
| CGAAGACCTTACATATTACA+AGG | - | chr5_2:41582917-41582936 | None:intergenic | 35.0% | |
| CAAACTTCATGTAAAGGGAT+CGG | - | chr5_2:41582944-41582963 | None:intergenic | 35.0% | |
| GATCCCTTTACATGAAGTTT+GGG | + | chr5_2:41582943-41582962 | Msa0770580:CDS | 35.0% | |
| AGAATGCTTTAGTGATGATC+TGG | + | chr5_2:41582989-41583008 | Msa0770580:CDS | 35.0% | |
| ! | TCGTCGAGATGTTAACATTT+TGG | + | chr5_2:41583049-41583068 | Msa0770580:intron | 35.0% |
| ! | GAGATGTTAACATTTTGGAC+CGG | + | chr5_2:41583054-41583073 | Msa0770580:intron | 35.0% |
| TGAAGATGCAGATCATGTTA+AGG | + | chr5_2:41583127-41583146 | Msa0770580:intron | 35.0% | |
| TGACGTATCAGTTTAACAGT+TGG | + | chr5_2:41583233-41583252 | Msa0770580:intron | 35.0% | |
| ! | TTGAATTTGCTCTCCAGATA+TGG | + | chr5_2:41583575-41583594 | Msa0770580:intron | 35.0% |
| ! | TGGCGACAATGTTGATATTT+TGG | - | chr5_2:41583613-41583632 | None:intergenic | 35.0% |
| ACAACATTGTTTAAGCTGCA+TGG | - | chr5_2:41583751-41583770 | None:intergenic | 35.0% | |
| AACCAAAATGTTGCAATGCA+AGG | - | chr5_2:41583778-41583797 | None:intergenic | 35.0% | |
| GATAATCCACGACTTAAAAC+AGG | + | chr5_2:41583891-41583910 | Msa0770580:CDS | 35.0% | |
| ! | AAACAGGCATGGAACTTTTA+AGG | + | chr5_2:41583907-41583926 | Msa0770580:CDS | 35.0% |
| ! | AACAGGCATGGAACTTTTAA+GGG | + | chr5_2:41583908-41583927 | Msa0770580:CDS | 35.0% |
| !! | GCACCATTATTGATTCTTCA+TGG | + | chr5_2:41584256-41584275 | Msa0770580:CDS | 35.0% |
| GCTCCATGAAGAATCAATAA+TGG | - | chr5_2:41584262-41584281 | None:intergenic | 35.0% | |
| ! | AAATGGTTACCACTGCATTT+TGG | + | chr5_2:41584366-41584385 | Msa0770580:CDS | 35.0% |
| TACATGATGACATTGTCTCA+TGG | + | chr5_2:41584419-41584438 | Msa0770580:CDS | 35.0% | |
| ! | AGTTAAGTGAGACTTTTCCA+TGG | + | chr5_2:41584459-41584478 | Msa0770580:exon | 35.0% |
| CATGATCGGAAGTTCCAAAA+TGG | - | chr5_2:41580552-41580571 | None:intergenic | 40.0% | |
| !!! | CATTTTGGAACTTCCGATCA+TGG | + | chr5_2:41580550-41580569 | Msa0770580:five_prime_UTR | 40.0% |
| AAAGAGCTATGGTCCATGAT+CGG | - | chr5_2:41580566-41580585 | None:intergenic | 40.0% | |
| ! | AATGGGAGAGAAAGGTATGA+AGG | - | chr5_2:41580810-41580829 | None:intergenic | 40.0% |
| TCTTCACTCACACCTTCAAT+TGG | - | chr5_2:41580929-41580948 | None:intergenic | 40.0% | |
| ! | AACAATCTGAAGCCTGACAT+TGG | - | chr5_2:41581087-41581106 | None:intergenic | 40.0% |
| ! | TTTGAAGCACGTATACTCCT+AGG | + | chr5_2:41581163-41581182 | Msa0770580:intron | 40.0% |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | + | chr5_2:41581296-41581315 | Msa0770580:intron | 40.0% |
| GGAGTATGTGTTTCATAGGT+TGG | + | chr5_2:41581300-41581319 | Msa0770580:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | + | chr5_2:41581589-41581608 | Msa0770580:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | + | chr5_2:41581590-41581609 | Msa0770580:intron | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | + | chr5_2:41581591-41581610 | Msa0770580:CDS | 40.0% | |
| CATTGTGTGAAAATTGGGTG+TGG | + | chr5_2:41581848-41581867 | Msa0770580:intron | 40.0% | |
| !!! | TGGGTATGCTGTTTTTGCTA+TGG | + | chr5_2:41581992-41582011 | Msa0770580:CDS | 40.0% |
| !! | GTTTTTGCTATGGACTATCC+AGG | + | chr5_2:41582002-41582021 | Msa0770580:CDS | 40.0% |
| TCGACAAGATCATCGAAGTT+TGG | - | chr5_2:41582062-41582081 | None:intergenic | 40.0% | |
| ACAGACACACCTATAATCGT+AGG | + | chr5_2:41582251-41582270 | Msa0770580:intron | 40.0% | |
| ACACCTATAATCGTAGGTGT+CGG | + | chr5_2:41582257-41582276 | Msa0770580:intron | 40.0% | |
| CTGGATAGGTTTCAAAGACA+TGG | + | chr5_2:41582282-41582301 | Msa0770580:intron | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | - | chr5_2:41582348-41582367 | None:intergenic | 40.0% | |
| AGAATTACCTCGAGTTCTGT+TGG | + | chr5_2:41582356-41582375 | Msa0770580:CDS | 40.0% | |
| GAATTACCTCGAGTTCTGTT+GGG | + | chr5_2:41582357-41582376 | Msa0770580:CDS | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | - | chr5_2:41582429-41582448 | None:intergenic | 40.0% | |
| CATGTGAGATTTGATACGTG+GGG | + | chr5_2:41582772-41582791 | Msa0770580:intron | 40.0% | |
| TTCCTTGAACCTTGTAACCT+AGG | + | chr5_2:41582797-41582816 | Msa0770580:intron | 40.0% | |
| TCCTTGAACCTTGTAACCTA+GGG | + | chr5_2:41582798-41582817 | Msa0770580:intron | 40.0% | |
| AGCATGACAGAGAAAGAAAG+AGG | + | chr5_2:41582861-41582880 | Msa0770580:intron | 40.0% | |
| CGATCCCTTTACATGAAGTT+TGG | + | chr5_2:41582942-41582961 | Msa0770580:CDS | 40.0% | |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | + | chr5_2:41582965-41582984 | Msa0770580:CDS | 40.0% |
| TTCTTCCCATTTCCTCTTCT+GGG | - | chr5_2:41582973-41582992 | None:intergenic | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | - | chr5_2:41582974-41582993 | None:intergenic | 40.0% | |
| TGACCGGTCAATATTGAATC+CGG | - | chr5_2:41583076-41583095 | None:intergenic | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | + | chr5_2:41583236-41583255 | Msa0770580:intron | 40.0% | |
| ACATCATCTGCAATCTTACC+AGG | - | chr5_2:41583294-41583313 | None:intergenic | 40.0% | |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | - | chr5_2:41583369-41583388 | None:intergenic | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | - | chr5_2:41583386-41583405 | None:intergenic | 40.0% |
| AGTTCAGCAAGGTCTTTGTT+TGG | - | chr5_2:41583387-41583406 | None:intergenic | 40.0% | |
| AAACAAAGACCTTGCTGAAC+TGG | + | chr5_2:41583386-41583405 | Msa0770580:CDS | 40.0% | |
| ! | TGCCTTGCATTGCAACATTT+TGG | + | chr5_2:41583773-41583792 | Msa0770580:intron | 40.0% |
| AAGGAATGTCTGTGCTTCAT+AGG | - | chr5_2:41584031-41584050 | None:intergenic | 40.0% | |
| TATGAAGCACAGACATTCCT+TGG | + | chr5_2:41584030-41584049 | Msa0770580:intron | 40.0% | |
| ATGCTGAAACCTATGAAGCA+CGG | - | chr5_2:41584169-41584188 | None:intergenic | 40.0% | |
| ATGGTTGATTGGGTTATGTC+AGG | + | chr5_2:41584228-41584247 | Msa0770580:intron | 40.0% | |
| !! | GTTACCACTGCATTTTGGAA+GGG | + | chr5_2:41584371-41584390 | Msa0770580:CDS | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | + | chr5_2:41584372-41584391 | Msa0770580:CDS | 40.0% |
| TTGTCTCATGGCTTGATTCT+AGG | + | chr5_2:41584431-41584450 | Msa0770580:CDS | 40.0% | |
| GCACGTATACTCCTAGGATT+AGG | + | chr5_2:41581169-41581188 | Msa0770580:intron | 45.0% | |
| TGAAAGGAATTCGAGGGGAT+TGG | + | chr5_2:41581596-41581615 | Msa0770580:CDS | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | - | chr5_2:41581645-41581664 | None:intergenic | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | + | chr5_2:41581644-41581663 | Msa0770580:CDS | 45.0% | |
| !! | GCTATGGACTATCCAGGTTT+TGG | + | chr5_2:41582008-41582027 | Msa0770580:CDS | 45.0% |
| ! | CCTTCTGAAAGTCCAAAACC+TGG | - | chr5_2:41582023-41582042 | None:intergenic | 45.0% |
| !!! | CCAGGTTTTGGACTTTCAGA+AGG | + | chr5_2:41582020-41582039 | Msa0770580:CDS | 45.0% |
| GGACTTTCAGAAGGATTGCA+TGG | + | chr5_2:41582029-41582048 | Msa0770580:CDS | 45.0% | |
| ! | CAGTTTCAAGTGTAGGGTCA+GGG | - | chr5_2:41582168-41582187 | None:intergenic | 45.0% |
| ! | TCAGTTTCAAGTGTAGGGTC+AGG | - | chr5_2:41582169-41582188 | None:intergenic | 45.0% |
| ! | TGTCTGTTGACTGACACACA+TGG | - | chr5_2:41582238-41582257 | None:intergenic | 45.0% |
| AGTTCTGTTGGGACAGTCAA+TGG | + | chr5_2:41582368-41582387 | Msa0770580:CDS | 45.0% | |
| GTTCTGTTGGGACAGTCAAT+GGG | + | chr5_2:41582369-41582388 | Msa0770580:CDS | 45.0% | |
| TGCTAAGTGGCCCAATCTAT+AGG | + | chr5_2:41582729-41582748 | Msa0770580:intron | 45.0% | |
| TCCCTAGGTTACAAGGTTCA+AGG | - | chr5_2:41582802-41582821 | None:intergenic | 45.0% | |
| ACAAGTTTCAGTAGCTCCCT+AGG | - | chr5_2:41582817-41582836 | None:intergenic | 45.0% | |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | + | chr5_2:41582958-41582977 | Msa0770580:CDS | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | + | chr5_2:41582964-41582983 | Msa0770580:CDS | 45.0% |
| GGACCGGATTCAATATTGAC+CGG | + | chr5_2:41583070-41583089 | Msa0770580:intron | 45.0% | |
| !! | GACTTGCTGATTTGTGTTCC+TGG | + | chr5_2:41583273-41583292 | Msa0770580:intron | 45.0% |
| ACCACCTGATGCAGTAATGA+AGG | + | chr5_2:41583317-41583336 | Msa0770580:CDS | 45.0% | |
| AACGCCTTCATTACTGCATC+AGG | - | chr5_2:41583324-41583343 | None:intergenic | 45.0% | |
| TTGCTCTCCAGATATGGTTG+TGG | + | chr5_2:41583581-41583600 | Msa0770580:intron | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | - | chr5_2:41583591-41583610 | None:intergenic | 45.0% | |
| GTTTAAGCTGCATGGCTAGT+AGG | - | chr5_2:41583743-41583762 | None:intergenic | 45.0% | |
| TCCACGACTTAAAACAGGCA+TGG | + | chr5_2:41583896-41583915 | Msa0770580:CDS | 45.0% | |
| !! | TCCATGCCTGTTTTAAGTCG+TGG | - | chr5_2:41583900-41583919 | None:intergenic | 45.0% |
| GCACAGACATTCCTTGGATT+AGG | + | chr5_2:41584036-41584055 | Msa0770580:intron | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | + | chr5_2:41584157-41584176 | Msa0770580:intron | 45.0% | |
| ! | GGTTACCACTGCATTTTGGA+AGG | + | chr5_2:41584370-41584389 | Msa0770580:CDS | 45.0% |
| CTCAGAACACGCCTAATCCT+AGG | - | chr5_2:41581183-41581202 | None:intergenic | 50.0% | |
| CTAGGATTAGGCGTGTTCTG+AGG | + | chr5_2:41581181-41581200 | Msa0770580:intron | 50.0% | |
| !! | TATCAGCGTTGACGTGTCTG+AGG | + | chr5_2:41581279-41581298 | Msa0770580:intron | 50.0% |
| ! | TTTTCCTAGGATGCTCCTGC+TGG | + | chr5_2:41581410-41581429 | Msa0770580:intron | 50.0% |
| TCTTCTGCTCTGATTCCAGC+AGG | - | chr5_2:41581428-41581447 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | + | chr5_2:41581973-41581992 | Msa0770580:CDS | 50.0% | |
| ! | GCACCGACACCTACGATTAT+AGG | - | chr5_2:41582263-41582282 | None:intergenic | 50.0% |
| !! | ATAATCGTAGGTGTCGGTGC+TGG | + | chr5_2:41582263-41582282 | Msa0770580:intron | 50.0% |
| TGTTGGGACAGTCAATGGGT+GGG | + | chr5_2:41582373-41582392 | Msa0770580:CDS | 50.0% | |
| CAGTAGCTCCCTAGGTTACA+AGG | - | chr5_2:41582809-41582828 | None:intergenic | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | - | chr5_2:41583321-41583340 | None:intergenic | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | - | chr5_2:41583398-41583417 | None:intergenic | 50.0% |
| ACGGATACAGACACGTACAC+CGG | - | chr5_2:41584150-41584169 | None:intergenic | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | + | chr5_2:41584270-41584289 | Msa0770580:CDS | 50.0% | |
| GTTCCCCTTCCAAAATGCAG+TGG | - | chr5_2:41584378-41584397 | None:intergenic | 50.0% | |
| !! | GATTCCAGCAGGAGCATCCT+AGG | - | chr5_2:41581417-41581436 | None:intergenic | 55.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | + | chr5_2:41581630-41581649 | Msa0770580:CDS | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | + | chr5_2:41581972-41581991 | Msa0770580:CDS | 55.0% | |
| GACTGTCCCAACAGAACTCG+AGG | - | chr5_2:41582366-41582385 | None:intergenic | 55.0% | |
| CTGTTGGGACAGTCAATGGG+TGG | + | chr5_2:41582372-41582391 | Msa0770580:CDS | 55.0% | |
| GTTGGGACAGTCAATGGGTG+GGG | + | chr5_2:41582374-41582393 | Msa0770580:CDS | 55.0% | |
| AGCGAGACACGCCTAATCCA+AGG | - | chr5_2:41584050-41584069 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCTCGCTGT+CGG | + | chr5_2:41584052-41584071 | Msa0770580:intron | 55.0% | |
| !! | CGTAGGTGTCGGTGCTGGAT+AGG | + | chr5_2:41582268-41582287 | Msa0770580:intron | 60.0% |
| GGGTGGGGCAGTTTCGCTTA+AGG | + | chr5_2:41582389-41582408 | Msa0770580:CDS | 60.0% | |
| ! | CGGTGTCAGCGTGTCGTGTC+CGG | + | chr5_2:41584128-41584147 | Msa0770580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 41580544 | 41584707 | 41580544 | ID=Msa0770580;Name=Msa0770580 |
| chr5_2 | mRNA | 41580544 | 41584707 | 41580544 | ID=Msa0770580-mRNA-1;Parent=Msa0770580;Name=Msa0770580-mRNA-1;_AED=0.12;_eAED=0.12;_QI=197|0.7|0.81|0.90|0.8|0.63|11|190|433 |
| chr5_2 | exon | 41580544 | 41580613 | 41580544 | ID=Msa0770580-mRNA-1:exon:13084;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41580634 | 41581054 | 41580634 | ID=Msa0770580-mRNA-1:exon:13085;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41581419 | 41581463 | 41581419 | ID=Msa0770580-mRNA-1:exon:13086;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41581591 | 41581720 | 41581591 | ID=Msa0770580-mRNA-1:exon:13087;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41581967 | 41582113 | 41581967 | ID=Msa0770580-mRNA-1:exon:13088;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41582340 | 41582470 | 41582340 | ID=Msa0770580-mRNA-1:exon:13089;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41582912 | 41583010 | 41582912 | ID=Msa0770580-mRNA-1:exon:13090;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41583300 | 41583437 | 41583300 | ID=Msa0770580-mRNA-1:exon:13091;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41583864 | 41583962 | 41583864 | ID=Msa0770580-mRNA-1:exon:13092;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41584250 | 41584534 | 41584250 | ID=Msa0770580-mRNA-1:exon:13093;Parent=Msa0770580-mRNA-1 |
| chr5_2 | exon | 41584584 | 41584707 | 41584584 | ID=Msa0770580-mRNA-1:exon:13094;Parent=Msa0770580-mRNA-1 |
| chr5_2 | five_prime_UTR | 41580544 | 41580613 | 41580544 | ID=Msa0770580-mRNA-1:five_prime_utr;Parent=Msa0770580-mRNA-1 |
| chr5_2 | five_prime_UTR | 41580634 | 41580760 | 41580634 | ID=Msa0770580-mRNA-1:five_prime_utr;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41580761 | 41581054 | 41580761 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41581419 | 41581463 | 41581419 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41581591 | 41581720 | 41581591 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41581967 | 41582113 | 41581967 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41582340 | 41582470 | 41582340 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41582912 | 41583010 | 41582912 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41583300 | 41583437 | 41583300 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41583864 | 41583962 | 41583864 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | CDS | 41584250 | 41584468 | 41584250 | ID=Msa0770580-mRNA-1:cds;Parent=Msa0770580-mRNA-1 |
| chr5_2 | three_prime_UTR | 41584469 | 41584534 | 41584469 | ID=Msa0770580-mRNA-1:three_prime_utr;Parent=Msa0770580-mRNA-1 |
| chr5_2 | three_prime_UTR | 41584584 | 41584707 | 41584584 | ID=Msa0770580-mRNA-1:three_prime_utr;Parent=Msa0770580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
