AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126850 MtrunA17_Chr7g0269261 90.212 378 4 2 7 351 1 378 0.0 690
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126850 AT2G47790.1 63.686 369 96 5 20 351 25 392 3.87e-165 466

Find 89 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGATTGATGGATTT+TGG 0.136354 7_3:+78409771 Msa1126850:three_prime_UTR
AGCTTCTGAAAGTTGGAATT+TGG 0.165604 7_3:+78408102 Msa1126850:CDS
CTCATTTCTGCTTCAGTTGA+TGG 0.185036 7_3:+78407140 Msa1126850:CDS
CAAAATGTAGGTGATTAATA+TGG 0.195603 7_3:+78407503 Msa1126850:intron
GTCGTTTCACTGTAATTTAC+AGG 0.258641 7_3:-78409438 None:intergenic
AAACAGTCACAAACAATAAA+TGG 0.263729 7_3:+78404974 Msa1126850:exon
GGACGTACTTTGGGATGATT+TGG 0.280115 7_3:-78405112 None:intergenic
AACTCTATCCAAACTAATTT+CGG 0.290124 7_3:+78405074 Msa1126850:CDS
GAACAAGAGCTTAGAATATT+GGG 0.292886 7_3:-78405400 None:intergenic
CATCCACATGAGAATCTTCT+AGG 0.294934 7_3:-78406062 None:intergenic
TAAACTTGGGTTAGGATTGA+TGG 0.304510 7_3:+78409764 Msa1126850:three_prime_UTR
GCGTTTAACGTTGTTGGGTA+TGG 0.309545 7_3:-78405039 None:intergenic
TTGCATGTAATATTTGTAAT+GGG 0.313413 7_3:+78409887 Msa1126850:intron
AGAACAAGAGCTTAGAATAT+TGG 0.313825 7_3:-78405401 None:intergenic
CGGCACAAATGCGGGTACTT+TGG 0.324412 7_3:+78409407 Msa1126850:CDS
GGCACAAATGCGGGTACTTT+GGG 0.345345 7_3:+78409408 Msa1126850:CDS
AATCGTCACCGAAATTAGTT+TGG 0.355363 7_3:-78405082 None:intergenic
ATCTTGGATTTCAAGTTCAT+TGG 0.361402 7_3:+78409629 Msa1126850:CDS
TACAGTGAAACGACAACAAT+TGG 0.373503 7_3:+78409447 Msa1126850:CDS
ACCGAAGCGTTTAACGTTGT+TGG 0.380689 7_3:-78405045 None:intergenic
GCATCAAAACTAGTATTAGT+AGG 0.387663 7_3:-78409694 None:intergenic
GAGAGAGTTATCAGAAGCTT+TGG 0.390315 7_3:+78407556 Msa1126850:CDS
CCCAGGTACTCTTGTGGGAT+TGG 0.391389 7_3:+78406016 Msa1126850:intron
CCAGTGGTGGGTCAATATTA+TGG 0.397482 7_3:+78405319 Msa1126850:CDS
ATTGCATGTAATATTTGTAA+TGG 0.405931 7_3:+78409886 Msa1126850:intron
GGATGGACAGGTGGGGAAGA+TGG 0.408251 7_3:+78409558 Msa1126850:CDS
ATGAACTTGAAATCCAAGAT+TGG 0.410585 7_3:-78409626 None:intergenic
CCGAAGCGTTTAACGTTGTT+GGG 0.411456 7_3:-78405044 None:intergenic
CGTTTAACGTTGTTGGGTAT+GGG 0.432856 7_3:-78405038 None:intergenic
TGCAATTGCGGTGGAAGAAA+AGG 0.434740 7_3:-78404936 None:intergenic
ATGTCCAGAGTTCATAGTTC+AGG 0.435022 7_3:+78409528 Msa1126850:CDS
GTACTTTAGCTTCTGAAAGT+TGG 0.459371 7_3:+78408095 Msa1126850:CDS
GAAATCTTCAGCTTCTCCAT+TGG 0.460403 7_3:+78405853 Msa1126850:intron
ATCTTCAGCTTCTCCATTGG+AGG 0.466757 7_3:+78405856 Msa1126850:CDS
ACGTTGTTGGGTATGGGAAA+AGG 0.467623 7_3:-78405032 None:intergenic
CATCAAAACTAGTATTAGTA+GGG 0.468071 7_3:-78409693 None:intergenic
TTGTGAATGGAAGGGATGAT+TGG 0.474743 7_3:+78405248 Msa1126850:intron
ATCTGCATATTTGATACCAC+TGG 0.474964 7_3:+78407167 Msa1126850:CDS
AATGGAAGCAATTGCGGCCA+TGG 0.476431 7_3:+78404992 Msa1126850:exon
CTAAGCTCTTGTTCTTCAGA+TGG 0.477643 7_3:+78405409 Msa1126850:CDS
ATTATCCCAGGTACTCTTGT+GGG 0.479200 7_3:+78406011 Msa1126850:intron
AAAATGTAGGTGATTAATAT+GGG 0.496513 7_3:+78407504 Msa1126850:intron
TGCTGCGGGTTGTGATTCAC+AGG 0.496992 7_3:+78405897 Msa1126850:CDS
CACTTCTAACAACATCTGTA+TGG 0.503113 7_3:-78409497 None:intergenic
TTGATCGGCGGCACAAATGC+GGG 0.512819 7_3:+78409399 Msa1126850:CDS
AAGATGGTAGGCTATGTTGT+TGG 0.515760 7_3:+78409574 Msa1126850:CDS
CCCAACAACGTTAAACGCTT+CGG 0.516028 7_3:+78405044 Msa1126850:CDS
TTAACTCATATTGAAACTCT+CGG 0.520375 7_3:+78407582 Msa1126850:CDS
AATGCCTGAACTATGAACTC+TGG 0.526089 7_3:-78409532 None:intergenic
GCAATTGCGGTGGAAGAAAA+GGG 0.528056 7_3:-78404935 None:intergenic
CCATAATATTGACCCACCAC+TGG 0.537095 7_3:-78405319 None:intergenic
TAACTCATATTGAAACTCTC+GGG 0.537523 7_3:+78407583 Msa1126850:CDS
GGGAACATCAATTGCAAAGG+TGG 0.538474 7_3:+78407524 Msa1126850:CDS
GGACAGGTGGGGAAGATGGT+AGG 0.540295 7_3:+78409562 Msa1126850:CDS
AGTGGAAATTTAGTTGCTGC+GGG 0.541232 7_3:+78405883 Msa1126850:CDS
GAAACTGTATTCACCAGTGG+TGG 0.542400 7_3:+78405306 Msa1126850:CDS
ACAATAAATGGAAGCAATTG+CGG 0.543794 7_3:+78404986 Msa1126850:exon
AGCATTTGGGACTGGAAAGA+AGG 0.546349 7_3:+78408043 Msa1126850:intron
AAGGGATGATTGGAGTTCAA+TGG 0.555515 7_3:+78405258 Msa1126850:intron
TCAATATTATGGAGAGTGCA+AGG 0.560776 7_3:+78405330 Msa1126850:CDS
ACTAGTATTAGTAGGGGTGA+TGG 0.565765 7_3:-78409686 None:intergenic
GACTGTTTCTATGAATATGA+AGG 0.571440 7_3:-78404959 None:intergenic
TGCATGTAATATTTGTAATG+GGG 0.575782 7_3:+78409888 Msa1126850:intron
GGAACATCAATTGCAAAGGT+GGG 0.576460 7_3:+78407525 Msa1126850:CDS
GTTGATCGGCGGCACAAATG+CGG 0.581332 7_3:+78409398 Msa1126850:CDS
TTCTCCATTGGAGGACCTAG+TGG 0.584400 7_3:+78405865 Msa1126850:CDS
TCATGTGGATGATGTCACTC+AGG 0.584599 7_3:+78406074 Msa1126850:CDS
AGTGAAACGACAACAATTGG+AGG 0.594927 7_3:+78409450 Msa1126850:CDS
TAGTGGAAATTTAGTTGCTG+CGG 0.595599 7_3:+78405882 Msa1126850:CDS
AATTATCCCAGGTACTCTTG+TGG 0.598714 7_3:+78406010 Msa1126850:intron
GAACTATGAACTCTGGACAT+AGG 0.601738 7_3:-78409525 None:intergenic
TATGGGAACATCAATTGCAA+AGG 0.605817 7_3:+78407521 Msa1126850:CDS
TCGTTGTTCCTCGACATCCA+TGG 0.607781 7_3:-78405009 None:intergenic
ATTTCCACTAGGTCCTCCAA+TGG 0.630109 7_3:-78405869 None:intergenic
GCAGAAGCAATTCTCGAAGG+TGG 0.633134 7_3:+78409474 Msa1126850:CDS
AATTGCGGCCATGGATGTCG+AGG 0.639683 7_3:+78405001 Msa1126850:CDS
GGTGCAGAAGCAATTCTCGA+AGG 0.645612 7_3:+78409471 Msa1126850:CDS
GGATGATTGGAGTTCAATGG+CGG 0.648745 7_3:+78405261 Msa1126850:CDS
ATCGTCGTTAATATCTCCAG+TGG 0.649496 7_3:-78407183 None:intergenic
CGACGATGATCATCTAGAGT+CGG 0.653681 7_3:+78407199 Msa1126850:CDS
ATTATGTATCACTAGCGTCA+AGG 0.654361 7_3:+78409966 Msa1126850:three_prime_UTR
ATCAAAACTAGTATTAGTAG+GGG 0.658117 7_3:-78409692 None:intergenic
AAACTGTATTCACCAGTGGT+GGG 0.659751 7_3:+78405307 Msa1126850:CDS
CAATATTATGGAGAGTGCAA+GGG 0.660822 7_3:+78405331 Msa1126850:CDS
GCAGCAACTAAATTTCCACT+AGG 0.673218 7_3:-78405880 None:intergenic
AGTGAAACTGTATTCACCAG+TGG 0.687068 7_3:+78405303 Msa1126850:CDS
TGAATATGAAGGTGCAATTG+CGG 0.692798 7_3:-78404948 None:intergenic
ATATGAAGGTGCAATTGCGG+TGG 0.696941 7_3:-78404945 None:intergenic
ATGCCTAGAAGATTCTCATG+TGG 0.767526 7_3:+78406059 Msa1126850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATAGTTTCTATAAA+AGG + chr7_3:78408204-78408223 Msa1126850:intron 10.0%
!! TAAAATTAAATTAAAGTCTT+CGG - chr7_3:78408932-78408951 None:intergenic 10.0%
!! TAAATTGTATAAAATTTATG+AGG - chr7_3:78408955-78408974 None:intergenic 10.0%
!! AAAAAATAAATAAAAACCTT+TGG - chr7_3:78409719-78409738 None:intergenic 10.0%
!!! AAAGGTTTTTATTTATTTTT+TGG + chr7_3:78409718-78409737 Msa1126850:three_prime_UTR 10.0%
!!! TTAGTTTTTTTTATTAAACT+TGG + chr7_3:78409750-78409769 Msa1126850:three_prime_UTR 10.0%
!!! TAGTTTTTTTTATTAAACTT+GGG + chr7_3:78409751-78409770 Msa1126850:three_prime_UTR 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr7_3:78409859-78409878 None:intergenic 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr7_3:78409859-78409878 None:intergenic 10.0%
!! AATTAAGAAAAAAAAAAGTG+AGG + chr7_3:78404858-78404877 Msa1126850:five_prime_UTR 15.0%
!! TTGTTACTAATGTTATTATT+TGG + chr7_3:78405481-78405500 Msa1126850:intron 15.0%
!!! AATTAAGTTGTTTATCTATA+AGG - chr7_3:78405531-78405550 None:intergenic 15.0%
!!! TGATATAATTGTTATTTCTT+TGG + chr7_3:78406453-78406472 Msa1126850:intron 15.0%
!! AATACAAGGAATTAAATATT+TGG - chr7_3:78406568-78406587 None:intergenic 15.0%
!! TTATCTGAGTTAAATATATT+TGG - chr7_3:78407293-78407312 None:intergenic 15.0%
!!! ACATTTTTTCAAATTTTTAC+CGG + chr7_3:78407828-78407847 Msa1126850:intron 15.0%
!!! ATCACATTACATTTTTATTT+TGG - chr7_3:78408375-78408394 None:intergenic 15.0%
!! TTCTCTTTAAATTAATAATG+TGG + chr7_3:78408668-78408687 Msa1126850:intron 15.0%
!!! TTCCATCATATTTTTTTTGT+TGG - chr7_3:78404835-78404854 None:intergenic 20.0%
!!! TTTTATTTATGCCCTTAATT+TGG + chr7_3:78405201-78405220 Msa1126850:intron 20.0%
!! TTTATTTATGCCCTTAATTT+GGG + chr7_3:78405202-78405221 Msa1126850:intron 20.0%
!! TTATAAAACTCCCAAATTAA+GGG - chr7_3:78405215-78405234 None:intergenic 20.0%
!! ATTATAAAACTCCCAAATTA+AGG - chr7_3:78405216-78405235 None:intergenic 20.0%
!!! TTTGGGAGTTTTATAATTTT+TGG + chr7_3:78405219-78405238 Msa1126850:intron 20.0%
!!! TTGGGAGTTTTATAATTTTT+GGG + chr7_3:78405220-78405239 Msa1126850:intron 20.0%
!!! TATCAATCAGATTTTGTTTT+CGG + chr7_3:78405366-78405385 Msa1126850:CDS 20.0%
!! ATCTTATTGCAGAAAAATAA+TGG + chr7_3:78406509-78406528 Msa1126850:intron 20.0%
!! TTATAAATCTACAAGGAATA+AGG - chr7_3:78406543-78406562 None:intergenic 20.0%
!!! TTTGGTTTTATAAATCTACA+AGG - chr7_3:78406550-78406569 None:intergenic 20.0%
!!! TAGAATTTGCTTTTTAACTT+TGG + chr7_3:78406780-78406799 Msa1126850:intron 20.0%
!!! CAATTTACAACCTTTTTAAA+TGG + chr7_3:78407267-78407286 Msa1126850:intron 20.0%
!! ATATATTTGGCCATTTAAAA+AGG - chr7_3:78407280-78407299 None:intergenic 20.0%
!! CACATTTGAAAAAAAAAAAC+AGG + chr7_3:78407411-78407430 Msa1126850:intron 20.0%
!! AAAATGTAGGTGATTAATAT+GGG + chr7_3:78407504-78407523 Msa1126850:intron 20.0%
!!! ACATTACATTTTTATTTTGG+AGG - chr7_3:78408372-78408391 None:intergenic 20.0%
!!! ATTTTATACAATTTAGTTCC+TGG + chr7_3:78408960-78408979 Msa1126850:intron 20.0%
!!! ATTTGTCAATTTGCTAAATT+CGG + chr7_3:78409110-78409129 Msa1126850:intron 20.0%
!!! TTTTTTATTAAACTTGGGTT+AGG + chr7_3:78409756-78409775 Msa1126850:three_prime_UTR 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr7_3:78409818-78409837 Msa1126850:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr7_3:78409819-78409838 Msa1126850:intron 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr7_3:78409818-78409837 Msa1126850:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr7_3:78409819-78409838 Msa1126850:intron 20.0%
!!! ATCATATTTTTTTTGTTGGC+GGG - chr7_3:78404831-78404850 None:intergenic 25.0%
!!! CATCATATTTTTTTTGTTGG+CGG - chr7_3:78404832-78404851 None:intergenic 25.0%
! AAACAGTCACAAACAATAAA+TGG + chr7_3:78404974-78404993 Msa1126850:exon 25.0%
! AACTCTATCCAAACTAATTT+CGG + chr7_3:78405074-78405093 Msa1126850:CDS 25.0%
!!! TTTTTGGGTTTTTTTGTGAA+TGG + chr7_3:78405235-78405254 Msa1126850:intron 25.0%
!!! ATCAATCAGATTTTGTTTTC+GGG + chr7_3:78405367-78405386 Msa1126850:CDS 25.0%
!! GTTTTTCTCTCCATAATTAT+TGG + chr7_3:78405503-78405522 Msa1126850:intron 25.0%
! TCAAATAAGTCAATGCAAAT+AGG + chr7_3:78405750-78405769 Msa1126850:intron 25.0%
!! TAATCTAAAACTTGATCTGA+TGG + chr7_3:78406129-78406148 Msa1126850:intron 25.0%
!! TTTTATAAACTGCCAACAAA+TGG + chr7_3:78406239-78406258 Msa1126850:intron 25.0%
! TTTATAAACTGCCAACAAAT+GGG + chr7_3:78406240-78406259 Msa1126850:intron 25.0%
! TGTTAGGACTATAGAATAAA+AGG + chr7_3:78406292-78406311 Msa1126850:intron 25.0%
! ATAGTATTCTCTATTGTGAA+GGG + chr7_3:78406418-78406437 Msa1126850:intron 25.0%
!!! TTTCTTTGGAATTCAATTCT+TGG + chr7_3:78406467-78406486 Msa1126850:intron 25.0%
!!! TTCTTTGGAATTCAATTCTT+GGG + chr7_3:78406468-78406487 Msa1126850:intron 25.0%
! ATAAGATTTCCACTATTGTT+AGG - chr7_3:78406496-78406515 None:intergenic 25.0%
! TTATTGCAGAAAAATAATGG+AGG + chr7_3:78406512-78406531 Msa1126850:intron 25.0%
!! TTATTTATGCAGGATTAGTA+AGG + chr7_3:78406709-78406728 Msa1126850:intron 25.0%
! TTAGTAAGGAGTAATTCAAT+TGG + chr7_3:78406723-78406742 Msa1126850:intron 25.0%
! AAAATACATGTGACAAATTC+AGG - chr7_3:78406856-78406875 None:intergenic 25.0%
!! ATGTATTTTATTACCTTGCT+TGG + chr7_3:78406867-78406886 Msa1126850:intron 25.0%
!! TGTCTATTTTCATTTTCTGA+GGG - chr7_3:78406968-78406987 None:intergenic 25.0%
! GAAAATGAAAATAGACAGTA+AGG + chr7_3:78406971-78406990 Msa1126850:intron 25.0%
! AGATAAGTAATCAACAGAAT+AGG + chr7_3:78407307-78407326 Msa1126850:intron 25.0%
! AAGCATCAATAGTGTAAATA+GGG - chr7_3:78407370-78407389 None:intergenic 25.0%
!!! ATTTTTTGCTTGCAAAATGT+AGG + chr7_3:78407491-78407510 Msa1126850:intron 25.0%
! CAAAATGTAGGTGATTAATA+TGG + chr7_3:78407503-78407522 Msa1126850:intron 25.0%
! TTAACTCATATTGAAACTCT+CGG + chr7_3:78407582-78407601 Msa1126850:CDS 25.0%
!! TATTCTTTTGTGTAGCATTT+GGG + chr7_3:78408030-78408049 Msa1126850:intron 25.0%
! ATAAGCATATTCCATCAAAT+AGG - chr7_3:78408148-78408167 None:intergenic 25.0%
!! CATTGTAGTTCTATTGTAAT+CGG + chr7_3:78408264-78408283 Msa1126850:intron 25.0%
!!! TTAATTTTCGAAGAAAGCAT+TGG - chr7_3:78408341-78408360 None:intergenic 25.0%
! GTAGTATATGTAATTTAGCA+TGG - chr7_3:78408559-78408578 None:intergenic 25.0%
!!! ATGCTCTGAATTTTATGAAT+TGG + chr7_3:78408707-78408726 Msa1126850:intron 25.0%
! CTTATTCAGTCATAAATACA+TGG + chr7_3:78409179-78409198 Msa1126850:intron 25.0%
!!! TCCAAGATTGGTTTTTTTTA+GGG - chr7_3:78409617-78409636 None:intergenic 25.0%
!!! ATCCAAGATTGGTTTTTTTT+AGG - chr7_3:78409618-78409637 None:intergenic 25.0%
! ATCAAAACTAGTATTAGTAG+GGG - chr7_3:78409695-78409714 None:intergenic 25.0%
! CATCAAAACTAGTATTAGTA+GGG - chr7_3:78409696-78409715 None:intergenic 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr7_3:78409820-78409839 Msa1126850:intron 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr7_3:78409820-78409839 Msa1126850:intron 25.0%
!!! TCATATTTTTTTTGTTGGCG+GGG - chr7_3:78404830-78404849 None:intergenic 30.0%
CGCCAACAAAAAAAATATGA+TGG + chr7_3:78404830-78404849 Msa1126850:five_prime_UTR 30.0%
! TTATTGAGCTTTTGCTTAAC+TGG + chr7_3:78404881-78404900 Msa1126850:five_prime_UTR 30.0%
!! GACTGTTTCTATGAATATGA+AGG - chr7_3:78404962-78404981 None:intergenic 30.0%
ACAATAAATGGAAGCAATTG+CGG + chr7_3:78404986-78405005 Msa1126850:exon 30.0%
AGCTTAAGAAGAAAGTGAAA+AGG - chr7_3:78405136-78405155 None:intergenic 30.0%
GAACAAGAGCTTAGAATATT+GGG - chr7_3:78405403-78405422 None:intergenic 30.0%
AGAACAAGAGCTTAGAATAT+TGG - chr7_3:78405404-78405423 None:intergenic 30.0%
! CTATAAGGCACCAATAATTA+TGG - chr7_3:78405516-78405535 None:intergenic 30.0%
ATAAGCACGTATATGATTAG+TGG - chr7_3:78405571-78405590 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAG+TGG - chr7_3:78405740-78405759 None:intergenic 30.0%
AAATTGAATGTCAAAACTGC+AGG + chr7_3:78405801-78405820 Msa1126850:intron 30.0%
TATCTATCTATCTATCACCA+AGG - chr7_3:78405943-78405962 None:intergenic 30.0%
TGAAATGATTTAGACTGGTA+TGG + chr7_3:78405968-78405987 Msa1126850:intron 30.0%
!!! CATTCTTACGTCAGTTTTTT+AGG - chr7_3:78406200-78406219 None:intergenic 30.0%
AAGTAGTTATACGTTGTTAG+AGG + chr7_3:78406330-78406349 Msa1126850:intron 30.0%
TGTTAGAGGAATATGTGTAT+AGG + chr7_3:78406344-78406363 Msa1126850:intron 30.0%
CATAGTATTCTCTATTGTGA+AGG + chr7_3:78406417-78406436 Msa1126850:intron 30.0%
TAGTATTCTCTATTGTGAAG+GGG + chr7_3:78406419-78406438 Msa1126850:intron 30.0%
AAGTCTCCAACTAACAATAT+CGG - chr7_3:78406597-78406616 None:intergenic 30.0%
!! TGGCTTGTTCAAAAAAAGTA+AGG + chr7_3:78406743-78406762 Msa1126850:intron 30.0%
! CTGTCTATTTTCATTTTCTG+AGG - chr7_3:78406969-78406988 None:intergenic 30.0%
TGTTGAAAATGTGTGATTCT+AGG + chr7_3:78407088-78407107 Msa1126850:intron 30.0%
!! GGTTATTAATTTGCATGTTG+TGG - chr7_3:78407349-78407368 None:intergenic 30.0%
CAAGCATCAATAGTGTAAAT+AGG - chr7_3:78407371-78407390 None:intergenic 30.0%
TCTTCAGTTCAAATATGCAA+AGG - chr7_3:78407447-78407466 None:intergenic 30.0%
TAACTCATATTGAAACTCTC+GGG + chr7_3:78407583-78407602 Msa1126850:CDS 30.0%
GAGGAAATAAAAACCAGTAA+TGG - chr7_3:78407621-78407640 None:intergenic 30.0%
!!! ACTGGTTTTTATTTCCTCAA+TGG + chr7_3:78407623-78407642 Msa1126850:intron 30.0%
TAAACTATATCTAGCCATTG+AGG - chr7_3:78407640-78407659 None:intergenic 30.0%
! GAATTGATGACTTTGAATTC+AGG - chr7_3:78407702-78407721 None:intergenic 30.0%
CATCAATTCATAGTTGCTAA+TGG + chr7_3:78407713-78407732 Msa1126850:intron 30.0%
! CTATTCTTTTGTGTAGCATT+TGG + chr7_3:78408029-78408048 Msa1126850:intron 30.0%
CTTATTTGTTTGAACCTGAA+AGG + chr7_3:78408163-78408182 Msa1126850:intron 30.0%
ACAATAGAACTACAATGGAT+CGG - chr7_3:78408261-78408280 None:intergenic 30.0%
CGATTACAATAGAACTACAA+TGG - chr7_3:78408266-78408285 None:intergenic 30.0%
AATTCCACAACTTGAAATCA+TGG + chr7_3:78408300-78408319 Msa1126850:intron 30.0%
AAAAATGTAATGTGATGCGT+AGG + chr7_3:78408379-78408398 Msa1126850:intron 30.0%
TGGAGAAAAGAAAGAAAGAA+TGG + chr7_3:78408446-78408465 Msa1126850:intron 30.0%
AGAAAAGAAAGAAAGAATGG+AGG + chr7_3:78408449-78408468 Msa1126850:intron 30.0%
GAAAAGAAAGAAAGAATGGA+GGG + chr7_3:78408450-78408469 Msa1126850:intron 30.0%
AAAAGAAAGAAAGAATGGAG+GGG + chr7_3:78408451-78408470 Msa1126850:intron 30.0%
!! TGCAATTTTGAGGATCAATT+TGG + chr7_3:78409153-78409172 Msa1126850:intron 30.0%
AAGGTAATTGCAATCAGATA+AGG - chr7_3:78409236-78409255 None:intergenic 30.0%
!! AAAGATCAATTTGTTGGCTA+AGG - chr7_3:78409313-78409332 None:intergenic 30.0%
GAAAGGAAAGATCAATTTGT+TGG - chr7_3:78409319-78409338 None:intergenic 30.0%
CAAGAGAAGCTGAAAAATTA+TGG + chr7_3:78409376-78409395 Msa1126850:CDS 30.0%
GCTGAAAAATTATGGTTGAT+CGG + chr7_3:78409384-78409403 Msa1126850:CDS 30.0%
!!! CCAAGATTGGTTTTTTTTAG+GGG - chr7_3:78409616-78409635 None:intergenic 30.0%
ATGAACTTGAAATCCAAGAT+TGG - chr7_3:78409629-78409648 None:intergenic 30.0%
!! ATCTTGGATTTCAAGTTCAT+TGG + chr7_3:78409629-78409648 Msa1126850:CDS 30.0%
! TTTTTCTTGCAAGTTCTTTC+TGG - chr7_3:78409663-78409682 None:intergenic 30.0%
GCATCAAAACTAGTATTAGT+AGG - chr7_3:78409697-78409716 None:intergenic 30.0%
!!! AATACTAGTTTTGATGCCAA+AGG + chr7_3:78409700-78409719 Msa1126850:exon 30.0%
! TGAATATGAAGGTGCAATTG+CGG - chr7_3:78404951-78404970 None:intergenic 35.0%
AATCGTCACCGAAATTAGTT+TGG - chr7_3:78405085-78405104 None:intergenic 35.0%
AAGTGAAAAGGACGTACTTT+GGG - chr7_3:78405124-78405143 None:intergenic 35.0%
AAAGTGAAAAGGACGTACTT+TGG - chr7_3:78405125-78405144 None:intergenic 35.0%
!!! TGGGTTTTTTTGTGAATGGA+AGG + chr7_3:78405239-78405258 Msa1126850:intron 35.0%
!!! GGGTTTTTTTGTGAATGGAA+GGG + chr7_3:78405240-78405259 Msa1126850:intron 35.0%
! TCAATATTATGGAGAGTGCA+AGG + chr7_3:78405330-78405349 Msa1126850:CDS 35.0%
! CAATATTATGGAGAGTGCAA+GGG + chr7_3:78405331-78405350 Msa1126850:CDS 35.0%
CTTATTTCCATAAGCTCTTG+AGG - chr7_3:78405662-78405681 None:intergenic 35.0%
CAGGTTTCTATTATCAATGC+TGG + chr7_3:78405820-78405839 Msa1126850:intron 35.0%
AAGCTGAAGATTTCTTGAGA+TGG - chr7_3:78405847-78405866 None:intergenic 35.0%
TAGTGGAAATTTAGTTGCTG+CGG + chr7_3:78405882-78405901 Msa1126850:CDS 35.0%
!! TCACAGGTTTGCTTTTCTAT+TGG + chr7_3:78405913-78405932 Msa1126850:intron 35.0%
CTGTGTGAAATGATTTAGAC+TGG + chr7_3:78405963-78405982 Msa1126850:intron 35.0%
ACAAACATCCTTTCACCAAA+GGG - chr7_3:78406163-78406182 None:intergenic 35.0%
!!! CTTACGTCAGTTTTTTAGGA+GGG - chr7_3:78406196-78406215 None:intergenic 35.0%
!!! TCTTACGTCAGTTTTTTAGG+AGG - chr7_3:78406197-78406216 None:intergenic 35.0%
AAAAACTGACGTAAGAATGC+AGG + chr7_3:78406201-78406220 Msa1126850:intron 35.0%
TGTAAGAGGAAACAGTTGTT+AGG + chr7_3:78406276-78406295 Msa1126850:intron 35.0%
AGAGGAATATGTGTATAGGT+AGG + chr7_3:78406348-78406367 Msa1126850:intron 35.0%
AGGTAGGACAATACAAATGT+TGG + chr7_3:78406364-78406383 Msa1126850:intron 35.0%
AATATCGGACACAGAATACA+AGG - chr7_3:78406582-78406601 None:intergenic 35.0%
!! TGTCTGTAGCCATTTTCATT+AGG + chr7_3:78406641-78406660 Msa1126850:intron 35.0%
CCATGTTGACCTAATGAAAA+TGG - chr7_3:78406653-78406672 None:intergenic 35.0%
! CCATTTTCATTAGGTCAACA+TGG + chr7_3:78406650-78406669 Msa1126850:intron 35.0%
CATATCATTCTACTCGTACA+AGG - chr7_3:78406806-78406825 None:intergenic 35.0%
CTTGTACGAGTAGAATGATA+TGG + chr7_3:78406804-78406823 Msa1126850:intron 35.0%
TGATATGGAGTGATCAACTT+TGG + chr7_3:78406819-78406838 Msa1126850:intron 35.0%
GACAAATTCAGGATTTGTCA+AGG - chr7_3:78406845-78406864 None:intergenic 35.0%
TTGGCTTCAGTTGAATGATA+TGG + chr7_3:78406886-78406905 Msa1126850:intron 35.0%
TATATATGCTCCAGCTTGAA+GGG - chr7_3:78407030-78407049 None:intergenic 35.0%
ATATATATGCTCCAGCTTGA+AGG - chr7_3:78407031-78407050 None:intergenic 35.0%
! CATTTTATCCCTGAAGAACA+AGG + chr7_3:78407113-78407132 Msa1126850:intron 35.0%
ATCTGCATATTTGATACCAC+TGG + chr7_3:78407167-78407186 Msa1126850:CDS 35.0%
TTGCAAGAATTGTCAACTGA+AGG - chr7_3:78407250-78407269 None:intergenic 35.0%
TATGGGAACATCAATTGCAA+AGG + chr7_3:78407521-78407540 Msa1126850:CDS 35.0%
!!! ATTGCAAAGGTGGGTTTTTT+TGG + chr7_3:78407534-78407553 Msa1126850:CDS 35.0%
GTACAATTCATCTCCATTAC+TGG + chr7_3:78407605-78407624 Msa1126850:intron 35.0%
AGTGCATCATAGCTAATGAA+TGG + chr7_3:78407887-78407906 Msa1126850:intron 35.0%
ACACTCTTATGCTCTTAATG+TGG + chr7_3:78407928-78407947 Msa1126850:intron 35.0%
CACTCTTATGCTCTTAATGT+GGG + chr7_3:78407929-78407948 Msa1126850:intron 35.0%
! TGCTCTTAATGTGGGTTATA+TGG + chr7_3:78407937-78407956 Msa1126850:intron 35.0%
! GTACTTTAGCTTCTGAAAGT+TGG + chr7_3:78408095-78408114 Msa1126850:CDS 35.0%
! AGCTTCTGAAAGTTGGAATT+TGG + chr7_3:78408102-78408121 Msa1126850:CDS 35.0%
GTTCTTTCCTTCCTATTTGA+TGG + chr7_3:78408134-78408153 Msa1126850:intron 35.0%
GCATATTCCATCAAATAGGA+AGG - chr7_3:78408144-78408163 None:intergenic 35.0%
TACGAAGTATAACACCTTTC+AGG - chr7_3:78408180-78408199 None:intergenic 35.0%
TATTGTAATCGGCCTTACTT+AGG + chr7_3:78408275-78408294 Msa1126850:intron 35.0%
! TTGTGGAATTAGCCTAAGTA+AGG - chr7_3:78408290-78408309 None:intergenic 35.0%
! CTCTTTAAACCTGATCCTTT+TGG + chr7_3:78408491-78408510 Msa1126850:intron 35.0%
CTACTTCATATTGAAGTGTG+TGG + chr7_3:78408575-78408594 Msa1126850:intron 35.0%
CCTCTAACAATAGAAGTCAA+CGG - chr7_3:78408777-78408796 None:intergenic 35.0%
! CAATTTAGTTCCTGGTGATA+TGG + chr7_3:78408968-78408987 Msa1126850:intron 35.0%
CATTTAATGTGCCACATCAT+AGG + chr7_3:78409026-78409045 Msa1126850:intron 35.0%
! GATCCATACTTGCAATTTTG+AGG + chr7_3:78409143-78409162 Msa1126850:intron 35.0%
GATCCTCAAAATTGCAAGTA+TGG - chr7_3:78409149-78409168 None:intergenic 35.0%
CAGTCATAAATACATGGCAT+TGG + chr7_3:78409185-78409204 Msa1126850:intron 35.0%
ATCTGATTGCAATTACCTTG+TGG + chr7_3:78409237-78409256 Msa1126850:intron 35.0%
AAGCTTGTATACTGCTCTAT+TGG + chr7_3:78409265-78409284 Msa1126850:intron 35.0%
AGCTTGTATACTGCTCTATT+GGG + chr7_3:78409266-78409285 Msa1126850:intron 35.0%
! GATCTTTCCTTTCTTTTTGC+AGG + chr7_3:78409326-78409345 Msa1126850:intron 35.0%
TAGTCAACCTGCAAAAAGAA+AGG - chr7_3:78409336-78409355 None:intergenic 35.0%
GAAAAATTATGGTTGATCGG+CGG + chr7_3:78409387-78409406 Msa1126850:CDS 35.0%
GTCGTTTCACTGTAATTTAC+AGG - chr7_3:78409441-78409460 None:intergenic 35.0%
TACAGTGAAACGACAACAAT+TGG + chr7_3:78409447-78409466 Msa1126850:CDS 35.0%
CACTTCTAACAACATCTGTA+TGG - chr7_3:78409500-78409519 None:intergenic 35.0%
! GTTCATAGTTCAGGCATTTT+TGG + chr7_3:78409537-78409556 Msa1126850:CDS 35.0%
!! ATAGTTCAGGCATTTTTGGA+TGG + chr7_3:78409541-78409560 Msa1126850:CDS 35.0%
CCCCTAAAAAAAACCAATCT+TGG + chr7_3:78409613-78409632 Msa1126850:CDS 35.0%
! TAAACTTGGGTTAGGATTGA+TGG + chr7_3:78409764-78409783 Msa1126850:three_prime_UTR 35.0%
!!! GGTTAGGATTGATGGATTTT+GGG + chr7_3:78409772-78409791 Msa1126850:three_prime_UTR 35.0%
ATTATGTATCACTAGCGTCA+AGG + chr7_3:78409966-78409985 Msa1126850:three_prime_UTR 35.0%
!! GTGGAAGAAAAGGGTTTTAG+GGG - chr7_3:78404929-78404948 None:intergenic 40.0%
! GGTGGAAGAAAAGGGTTTTA+GGG - chr7_3:78404930-78404949 None:intergenic 40.0%
CGTTTAACGTTGTTGGGTAT+GGG - chr7_3:78405041-78405060 None:intergenic 40.0%
TTGTGAATGGAAGGGATGAT+TGG + chr7_3:78405248-78405267 Msa1126850:intron 40.0%
AAGGGATGATTGGAGTTCAA+TGG + chr7_3:78405258-78405277 Msa1126850:intron 40.0%
AGTGAAACTGTATTCACCAG+TGG + chr7_3:78405303-78405322 Msa1126850:CDS 40.0%
AAACTGTATTCACCAGTGGT+GGG + chr7_3:78405307-78405326 Msa1126850:CDS 40.0%
CTAAGCTCTTGTTCTTCAGA+TGG + chr7_3:78405409-78405428 Msa1126850:CDS 40.0%
GTTCTTCAGATGGTACTATC+AGG + chr7_3:78405419-78405438 Msa1126850:intron 40.0%
AGATGGTACTATCAGGACTT+GGG + chr7_3:78405426-78405445 Msa1126850:intron 40.0%
GGACACAAGAACATTTCAAC+AGG + chr7_3:78405447-78405466 Msa1126850:intron 40.0%
! CTGAGGATAGCTTGTGAAAA+CGG - chr7_3:78405638-78405657 None:intergenic 40.0%
TCAAGCAGCAAAGAGATCAT+GGG - chr7_3:78405776-78405795 None:intergenic 40.0%
GAAATCTTCAGCTTCTCCAT+TGG + chr7_3:78405853-78405872 Msa1126850:intron 40.0%
GCAGCAACTAAATTTCCACT+AGG - chr7_3:78405883-78405902 None:intergenic 40.0%
AGTGGAAATTTAGTTGCTGC+GGG + chr7_3:78405883-78405902 Msa1126850:CDS 40.0%
!! CAGGTTTGCTTTTCTATTGG+AGG + chr7_3:78405916-78405935 Msa1126850:intron 40.0%
CTGTGTTGTGTAATTATCCC+AGG + chr7_3:78405999-78406018 Msa1126850:intron 40.0%
AATTATCCCAGGTACTCTTG+TGG + chr7_3:78406010-78406029 Msa1126850:intron 40.0%
ATTATCCCAGGTACTCTTGT+GGG + chr7_3:78406011-78406030 Msa1126850:intron 40.0%
ATGCCTAGAAGATTCTCATG+TGG + chr7_3:78406059-78406078 Msa1126850:CDS 40.0%
CATCCACATGAGAATCTTCT+AGG - chr7_3:78406065-78406084 None:intergenic 40.0%
AGTTGTAACCCTTTGGTGAA+AGG + chr7_3:78406152-78406171 Msa1126850:intron 40.0%
GACAAACATCCTTTCACCAA+AGG - chr7_3:78406164-78406183 None:intergenic 40.0%
TGGTGAAAGGATGTTTGTCT+TGG + chr7_3:78406165-78406184 Msa1126850:intron 40.0%
TCTTGGGTTCCTAACAATAG+TGG + chr7_3:78406484-78406503 Msa1126850:intron 40.0%
CTGTGTCCGATATTGTTAGT+TGG + chr7_3:78406588-78406607 Msa1126850:intron 40.0%
AAAATGGCTACAGACAGAAC+CGG - chr7_3:78406637-78406656 None:intergenic 40.0%
CATTAGGTCAACATGGCTTT+AGG + chr7_3:78406657-78406676 Msa1126850:intron 40.0%
GCATAAATAAGCAGTTTGCG+TGG - chr7_3:78406699-78406718 None:intergenic 40.0%
CGCAAACTGCTTATTTATGC+AGG + chr7_3:78406699-78406718 Msa1126850:intron 40.0%
AAAAAAACTCCCCTTCAAGC+TGG + chr7_3:78407017-78407036 Msa1126850:intron 40.0%
ATATATGCTCCAGCTTGAAG+GGG - chr7_3:78407029-78407048 None:intergenic 40.0%
CTCATTTCTGCTTCAGTTGA+TGG + chr7_3:78407140-78407159 Msa1126850:CDS 40.0%
ATCGTCGTTAATATCTCCAG+TGG - chr7_3:78407186-78407205 None:intergenic 40.0%
GGAACATCAATTGCAAAGGT+GGG + chr7_3:78407525-78407544 Msa1126850:CDS 40.0%
GAGAGAGTTATCAGAAGCTT+TGG + chr7_3:78407556-78407575 Msa1126850:CDS 40.0%
! CTCTTCCTCTCTTTTTGCTA+TGG + chr7_3:78407979-78407998 Msa1126850:intron 40.0%
ATCAGCCATAGCAAAAAGAG+AGG - chr7_3:78407987-78408006 None:intergenic 40.0%
!! TTTTGTGTAGCATTTGGGAC+TGG + chr7_3:78408035-78408054 Msa1126850:intron 40.0%
TTCTTTGAACTCTGTAGTGG+AGG - chr7_3:78408234-78408253 None:intergenic 40.0%
TCCACTACAGAGTTCAAAGA+AGG + chr7_3:78408233-78408252 Msa1126850:intron 40.0%
TCCTTCTTTGAACTCTGTAG+TGG - chr7_3:78408237-78408256 None:intergenic 40.0%
!! GAAGCCATGATTTCAAGTTG+TGG - chr7_3:78408307-78408326 None:intergenic 40.0%
TTGCTTGTCATGAGACAGAA+TGG + chr7_3:78408426-78408445 Msa1126850:intron 40.0%
! CTGAAAAGCACACAAAGCAA+AGG - chr7_3:78408536-78408555 None:intergenic 40.0%
CATATTGAAGTGTGTGGAGT+TGG + chr7_3:78408581-78408600 Msa1126850:intron 40.0%
! CTGGAATTTTCGTCAAAGCT+TGG - chr7_3:78408615-78408634 None:intergenic 40.0%
! CAAGCTTTGACGAAAATTCC+AGG + chr7_3:78408613-78408632 Msa1126850:intron 40.0%
TTTGACGAAAATTCCAGGAG+AGG + chr7_3:78408618-78408637 Msa1126850:intron 40.0%
! GTCAACGGAGTGACTATTTT+CGG - chr7_3:78408762-78408781 None:intergenic 40.0%
!! CCGTTGACTTCTATTGTTAG+AGG + chr7_3:78408774-78408793 Msa1126850:intron 40.0%
TGACACATTAACTGAACACG+TGG + chr7_3:78408805-78408824 Msa1126850:intron 40.0%
ACATTGAAGTGAGATCCAAG+TGG - chr7_3:78408835-78408854 None:intergenic 40.0%
GTTGATGTAAGATCCACGTA+GGG + chr7_3:78408992-78409011 Msa1126850:intron 40.0%
TTGATGTAAGATCCACGTAG+GGG + chr7_3:78408993-78409012 Msa1126850:intron 40.0%
CCATCTGTTAACACTGATGT+CGG - chr7_3:78409054-78409073 None:intergenic 40.0%
! ATACAAGCTTTTGCTCCACA+AGG - chr7_3:78409255-78409274 None:intergenic 40.0%
AGTGAAACGACAACAATTGG+AGG + chr7_3:78409450-78409469 Msa1126850:CDS 40.0%
GAACTATGAACTCTGGACAT+AGG - chr7_3:78409528-78409547 None:intergenic 40.0%
ATGTCCAGAGTTCATAGTTC+AGG + chr7_3:78409528-78409547 Msa1126850:CDS 40.0%
AATGCCTGAACTATGAACTC+TGG - chr7_3:78409535-78409554 None:intergenic 40.0%
AAGATGGTAGGCTATGTTGT+TGG + chr7_3:78409574-78409593 Msa1126850:CDS 40.0%
ACTAGTATTAGTAGGGGTGA+TGG - chr7_3:78409689-78409708 None:intergenic 40.0%
!!! GGGTTAGGATTGATGGATTT+TGG + chr7_3:78409771-78409790 Msa1126850:three_prime_UTR 40.0%
! CGGTGGAAGAAAAGGGTTTT+AGG - chr7_3:78404931-78404950 None:intergenic 45.0%
GCAATTGCGGTGGAAGAAAA+GGG - chr7_3:78404938-78404957 None:intergenic 45.0%
TGCAATTGCGGTGGAAGAAA+AGG - chr7_3:78404939-78404958 None:intergenic 45.0%
! ATATGAAGGTGCAATTGCGG+TGG - chr7_3:78404948-78404967 None:intergenic 45.0%
ACGTTGTTGGGTATGGGAAA+AGG - chr7_3:78405035-78405054 None:intergenic 45.0%
GCGTTTAACGTTGTTGGGTA+TGG - chr7_3:78405042-78405061 None:intergenic 45.0%
! CCGAAGCGTTTAACGTTGTT+GGG - chr7_3:78405047-78405066 None:intergenic 45.0%
CCCAACAACGTTAAACGCTT+CGG + chr7_3:78405044-78405063 Msa1126850:CDS 45.0%
! ACCGAAGCGTTTAACGTTGT+TGG - chr7_3:78405048-78405067 None:intergenic 45.0%
!! GGACGTACTTTGGGATGATT+TGG - chr7_3:78405115-78405134 None:intergenic 45.0%
GGATGATTGGAGTTCAATGG+CGG + chr7_3:78405261-78405280 Msa1126850:CDS 45.0%
GAAACTGTATTCACCAGTGG+TGG + chr7_3:78405306-78405325 Msa1126850:CDS 45.0%
CCATAATATTGACCCACCAC+TGG - chr7_3:78405322-78405341 None:intergenic 45.0%
!! CCAGTGGTGGGTCAATATTA+TGG + chr7_3:78405319-78405338 Msa1126850:CDS 45.0%
CAGATGGTACTATCAGGACT+TGG + chr7_3:78405425-78405444 Msa1126850:intron 45.0%
CTCAAGCAGCAAAGAGATCA+TGG - chr7_3:78405777-78405796 None:intergenic 45.0%
ATCTTCAGCTTCTCCATTGG+AGG + chr7_3:78405856-78405875 Msa1126850:CDS 45.0%
ATTTCCACTAGGTCCTCCAA+TGG - chr7_3:78405872-78405891 None:intergenic 45.0%
! GCTTTTCTATTGGAGGACCT+TGG + chr7_3:78405923-78405942 Msa1126850:intron 45.0%
TCATGTGGATGATGTCACTC+AGG + chr7_3:78406074-78406093 Msa1126850:CDS 45.0%
CTGATGGAGTTGTAACCCTT+TGG + chr7_3:78406145-78406164 Msa1126850:intron 45.0%
! AAACTGCCAACAAATGGGCT+CGG + chr7_3:78406245-78406264 Msa1126850:intron 45.0%
AATATCCCGAGCCCATTTGT+TGG - chr7_3:78406254-78406273 None:intergenic 45.0%
! GCTCGGGATATTTCTGTAAG+AGG + chr7_3:78406262-78406281 Msa1126850:intron 45.0%
!!! TTCGAGTGACTGGCTTTTTC+CGG + chr7_3:78406615-78406634 Msa1126850:intron 45.0%
CATTCAACTGAAGCCAAGCA+AGG - chr7_3:78406883-78406902 None:intergenic 45.0%
! TGAGCTTGCCTTGTTCTTCA+GGG - chr7_3:78407124-78407143 None:intergenic 45.0%
! ATGAGCTTGCCTTGTTCTTC+AGG - chr7_3:78407125-78407144 None:intergenic 45.0%
! CGACGATGATCATCTAGAGT+CGG + chr7_3:78407199-78407218 Msa1126850:CDS 45.0%
GGGAACATCAATTGCAAAGG+TGG + chr7_3:78407524-78407543 Msa1126850:CDS 45.0%
! AGCATTTGGGACTGGAAAGA+AGG + chr7_3:78408043-78408062 Msa1126850:intron 45.0%
! TTGAACTCTGTAGTGGAGGT+TGG - chr7_3:78408230-78408249 None:intergenic 45.0%
AGGAAAGCTCCAAAAGGATC+AGG - chr7_3:78408503-78408522 None:intergenic 45.0%
AAGTCTTCGGATCTCAAGAG+TGG - chr7_3:78408919-78408938 None:intergenic 45.0%
TACATCAACGCCATATCACC+AGG - chr7_3:78408981-78409000 None:intergenic 45.0%
CGTTGATGTAAGATCCACGT+AGG + chr7_3:78408991-78409010 Msa1126850:intron 45.0%
TGATGTAAGATCCACGTAGG+GGG + chr7_3:78408994-78409013 Msa1126850:intron 45.0%
TGATGTCGGAACCTATGATG+TGG - chr7_3:78409040-78409059 None:intergenic 45.0%
CCGACATCAGTGTTAACAGA+TGG + chr7_3:78409051-78409070 Msa1126850:intron 45.0%
!! ATGGCATTGGTTGAACAAGC+TGG + chr7_3:78409198-78409217 Msa1126850:intron 45.0%
!! TGGCATTGGTTGAACAAGCT+GGG + chr7_3:78409199-78409218 Msa1126850:intron 45.0%
!! TCAGGCATTTTTGGATGGAC+AGG + chr7_3:78409546-78409565 Msa1126850:CDS 45.0%
!! GCATTTTTGGATGGACAGGT+GGG + chr7_3:78409550-78409569 Msa1126850:CDS 45.0%
!! CATTTTTGGATGGACAGGTG+GGG + chr7_3:78409551-78409570 Msa1126850:CDS 45.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr7_3:78409860-78409879 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr7_3:78409861-78409880 None:intergenic 5.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr7_3:78409860-78409879 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr7_3:78409861-78409880 None:intergenic 5.0%
AATGGAAGCAATTGCGGCCA+TGG + chr7_3:78404992-78405011 Msa1126850:exon 50.0%
TCGTTGTTCCTCGACATCCA+TGG - chr7_3:78405012-78405031 None:intergenic 50.0%
CCATAAGCTCTTGAGGTCTG+AGG - chr7_3:78405655-78405674 None:intergenic 50.0%
CCTCAGACCTCAAGAGCTTA+TGG + chr7_3:78405652-78405671 Msa1126850:intron 50.0%
TTCTCCATTGGAGGACCTAG+TGG + chr7_3:78405865-78405884 Msa1126850:CDS 50.0%
!! CCAATCCCACAAGAGTACCT+GGG - chr7_3:78406019-78406038 None:intergenic 50.0%
!! TCCAATCCCACAAGAGTACC+TGG - chr7_3:78406020-78406039 None:intergenic 50.0%
! AACTGCCAACAAATGGGCTC+GGG + chr7_3:78406246-78406265 Msa1126850:intron 50.0%
AGTTGGAGACTTCGAGTGAC+TGG + chr7_3:78406605-78406624 Msa1126850:intron 50.0%
!! TGTAGCACCGACACTTCTGA+TGG + chr7_3:78407740-78407759 Msa1126850:intron 50.0%
! ACGCCTTCCATCAGAAGTGT+CGG - chr7_3:78407750-78407769 None:intergenic 50.0%
TGACACATGCACGTTGACAC+CGG - chr7_3:78407850-78407869 None:intergenic 50.0%
CCTGGAAGGAAAGCTCCAAA+AGG - chr7_3:78408509-78408528 None:intergenic 50.0%
!!! CCTTTTGGAGCTTTCCTTCC+AGG + chr7_3:78408506-78408525 Msa1126850:intron 50.0%
AAAGCAAAGGCTCTCCTGGA+AGG - chr7_3:78408523-78408542 None:intergenic 50.0%
ACACAAAGCAAAGGCTCTCC+TGG - chr7_3:78408527-78408546 None:intergenic 50.0%
! ATACAAGCTCTAGCCTCTCC+TGG - chr7_3:78408634-78408653 None:intergenic 50.0%
!! CGGTGCTGCGTTATTATCTC+AGG - chr7_3:78408742-78408761 None:intergenic 50.0%
TGAACACGTGGTCTTCCACT+TGG + chr7_3:78408817-78408836 Msa1126850:intron 50.0%
TGAACATGTAACCCCCTACG+TGG - chr7_3:78409008-78409027 None:intergenic 50.0%
GGCACAAATGCGGGTACTTT+GGG + chr7_3:78409408-78409427 Msa1126850:CDS 50.0%
GGTGCAGAAGCAATTCTCGA+AGG + chr7_3:78409471-78409490 Msa1126850:CDS 50.0%
GCAGAAGCAATTCTCGAAGG+TGG + chr7_3:78409474-78409493 Msa1126850:CDS 50.0%
!! GGCATTTTTGGATGGACAGG+TGG + chr7_3:78409549-78409568 Msa1126850:CDS 50.0%
AATTGCGGCCATGGATGTCG+AGG + chr7_3:78405001-78405020 Msa1126850:CDS 55.0%
! TGCTGCGGGTTGTGATTCAC+AGG + chr7_3:78405897-78405916 Msa1126850:CDS 55.0%
CCCAGGTACTCTTGTGGGAT+TGG + chr7_3:78406016-78406035 Msa1126850:intron 55.0%
! GCACCGACACTTCTGATGGA+AGG + chr7_3:78407744-78407763 Msa1126850:intron 55.0%
! CTTCTGATGGAAGGCGTGTC+CGG + chr7_3:78407753-78407772 Msa1126850:intron 55.0%
CACTGACACGTGTCGAACAC+CGG - chr7_3:78407775-78407794 None:intergenic 55.0%
TGTTCGACACGTGTCAGTGC+CGG + chr7_3:78407776-78407795 Msa1126850:intron 55.0%
GTCAGTGTCGTGTCAGTGAC+CGG - chr7_3:78407798-78407817 None:intergenic 55.0%
GTTGATCGGCGGCACAAATG+CGG + chr7_3:78409398-78409417 Msa1126850:CDS 55.0%
TTGATCGGCGGCACAAATGC+GGG + chr7_3:78409399-78409418 Msa1126850:CDS 55.0%
CGGCACAAATGCGGGTACTT+TGG + chr7_3:78409407-78409426 Msa1126850:CDS 55.0%
GGATGGACAGGTGGGGAAGA+TGG + chr7_3:78409558-78409577 Msa1126850:CDS 60.0%
GGACAGGTGGGGAAGATGGT+AGG + chr7_3:78409562-78409581 Msa1126850:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78404822 78410009 78404822 ID=Msa1126850;Name=Msa1126850
chr7_3 mRNA 78404822 78410009 78404822 ID=Msa1126850-mRNA-1;Parent=Msa1126850;Name=Msa1126850-mRNA-1;_AED=0.21;_eAED=0.21;_QI=171|0.75|0.66|1|0.37|0.22|9|240|351
chr7_3 exon 78404822 78405126 78404822 ID=Msa1126850-mRNA-1:exon:21906;Parent=Msa1126850-mRNA-1
chr7_3 exon 78405261 78405430 78405261 ID=Msa1126850-mRNA-1:exon:21907;Parent=Msa1126850-mRNA-1
chr7_3 exon 78405854 78405918 78405854 ID=Msa1126850-mRNA-1:exon:21908;Parent=Msa1126850-mRNA-1
chr7_3 exon 78406021 78406095 78406021 ID=Msa1126850-mRNA-1:exon:21909;Parent=Msa1126850-mRNA-1
chr7_3 exon 78407140 78407220 78407140 ID=Msa1126850-mRNA-1:exon:21910;Parent=Msa1126850-mRNA-1
chr7_3 exon 78407513 78407604 78407513 ID=Msa1126850-mRNA-1:exon:21911;Parent=Msa1126850-mRNA-1
chr7_3 exon 78408045 78408129 78408045 ID=Msa1126850-mRNA-1:exon:21912;Parent=Msa1126850-mRNA-1
chr7_3 exon 78409348 78409824 78409348 ID=Msa1126850-mRNA-1:exon:21913;Parent=Msa1126850-mRNA-1
chr7_3 exon 78409893 78410009 78409893 ID=Msa1126850-mRNA-1:exon:21914;Parent=Msa1126850-mRNA-1
chr7_3 five_prime_UTR 78404822 78404992 78404822 ID=Msa1126850-mRNA-1:five_prime_utr;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78404993 78405126 78404993 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78405261 78405430 78405261 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78405854 78405918 78405854 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78406021 78406095 78406021 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78407140 78407220 78407140 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78407513 78407604 78407513 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78408045 78408129 78408045 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 CDS 78409348 78409701 78409348 ID=Msa1126850-mRNA-1:cds;Parent=Msa1126850-mRNA-1
chr7_3 three_prime_UTR 78409702 78409824 78409702 ID=Msa1126850-mRNA-1:three_prime_utr;Parent=Msa1126850-mRNA-1
chr7_3 three_prime_UTR 78409893 78410009 78409893 ID=Msa1126850-mRNA-1:three_prime_utr;Parent=Msa1126850-mRNA-1
Gene Sequence

>Msa1126850

ATGGAAGCAATTGCGGCCATGGATGTCGAGGAACAACGACCTTTTCCCATACCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCTATCCAAACTAATTTCGGTGACGATTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTTCAATGGCGGTTTCACTTTCGACGAACGCAGTGAAACTGTATTCACCAGTGGTGGGTCAATATTATGGAGAGTGCAAGGGTCACACTGCAACTATCAATCAGATTTTGTTTTCGGGTCATTCTAATCCCAATATTCTAAGCTCTTGTTCTTCAGATGAAATCTTCAGCTTCTCCATTGGAGGACCTAGTGGAAATTTAGTTGCTGCGGGTTGTGATTCACAGGTACTCTTGTGGGATTGGAGAAATAACAAGCAAATTGCATGCCTAGAAGATTCTCATGTGGATGATGTCACTCAGCTCATTTCTGCTTCAGTTGATGGATTGATCTGCATATTTGATACCACTGGAGATATTAACGACGATGATCATCTAGAGTCGGTGATTAATATGGGAACATCAATTGCAAAGGTGGGTTTTTTTGGAGAGAGTTATCAGAAGCTTTGGTGTTTAACTCATATTGAAACTCTCGGCATTTGGGACTGGAAAGAAGGTAGAAATGAAGTAAACTTCTCAGACACGCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTACTTCGTTGATTGTCACTACTCAAGAGAAGCTGAAAAATTATGGTTGATCGGCGGCACAAATGCGGGTACTTTGGGTTTCTTTCCTGTAAATTACAGTGAAACGACAACAATTGGAGGTGCAGAAGCAATTCTCGAAGGTGGCCATACAGATGTTGTTAGAAGTGTTCTACCTATGTCCAGAGTTCATAGTTCAGGCATTTTTGGATGGACAGGTGGGGAAGATGGTAGGCTATGTTGTTGGCTGTCTGATGATGATTCCCCTAAAAAAAACCAATCTTGGATTTCAAGTTCATTGGTTATGAAACCAGAAAGAACTTGCAAGAAAAATCGCCATCACCCCTACTAA

Protein sequence

>Msa1126850

MEAIAAMDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPVVGQYYGECKGHTATINQILFSGHSNPNILSSCSSDEIFSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQLISASVDGLICIFDTTGDINDDDHLESVINMGTSIAKVGFFGESYQKLWCLTHIETLGIWDWKEGRNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLWLIGGTNAGTLGFFPVNYSETTTIGGAEAILEGGHTDVVRSVLPMSRVHSSGIFGWTGGEDGRLCCWLSDDDSPKKNQSWISSSLVMKPERTCKKNRHHPY*