AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122820 MtrunA17_Chr7g0261221 97.765 179 4 0 1 179 1 179 5.08e-125 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122820 AT2G44820.2 58.268 127 50 2 24 149 20 144 2.69e-36 125
Msa1122820 AT2G44820.1 58.268 127 50 2 24 149 39 163 3.21e-36 125

Find 48 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTATTCAACTTCTTTAT+AGG 0.212149 7_3:+73344244 Msa1122820:three_prime_UTR
CGTATGATTCTAGGACGTTT+TGG 0.217863 7_3:+73343922 Msa1122820:CDS
ATTGGTCGTGCCACACTTAA+AGG 0.224539 7_3:-73343766 None:intergenic
TGCTTATTGTTATGTTCTCT+TGG 0.258679 7_3:-73343173 None:intergenic
TAGAGAAAATACTGAAGTTT+TGG 0.269693 7_3:-73343235 None:intergenic
CAACTGGAAACATGATAAAA+AGG 0.272902 7_3:+73344134 Msa1122820:CDS
GCCTTTCAGCGTATGATTCT+AGG 0.290954 7_3:+73343913 Msa1122820:intron
CTGTATGATCTTTATAAATC+TGG 0.342433 7_3:+73344211 Msa1122820:three_prime_UTR
AATGGACATCAGGAAGATTA+TGG 0.351249 7_3:+73343205 Msa1122820:CDS
GAACTAATGCACGAAATAGA+TGG 0.358945 7_3:+73344355 Msa1122820:three_prime_UTR
CCAGTGTCATGACCTCTTGT+GGG 0.400870 7_3:-73344075 None:intergenic
TTCAGTGATGGAGGTGAAGC+AGG 0.412522 7_3:-73338645 None:intergenic
AGGAAAATGAAATGGACATC+AGG 0.425149 7_3:+73343195 Msa1122820:CDS
TTATTGTTATGTTCTCTTGG+AGG 0.434023 7_3:-73343170 None:intergenic
AACTTCAAACCTCTGTCCTC+TGG 0.439918 7_3:-73343994 None:intergenic
GACATGGAAAGAGCGCAAAA+AGG 0.445441 7_3:+73343576 Msa1122820:CDS
CAATAAGCAGGAAAATGAAA+TGG 0.447339 7_3:+73343187 Msa1122820:CDS
GGTTGTTTCCCTTGGTGGGA+AGG 0.454986 7_3:+73343612 Msa1122820:CDS
CAATCACTCTTCTGATTCTC+CGG 0.460414 7_3:+73338685 Msa1122820:five_prime_UTR
GATAGGAAGGTTGTTTCCCT+TGG 0.461391 7_3:+73343604 Msa1122820:CDS
TCCAGTGTCATGACCTCTTG+TGG 0.466337 7_3:-73344076 None:intergenic
AACTAATGCACGAAATAGAT+GGG 0.488096 7_3:+73344356 Msa1122820:three_prime_UTR
ATGAAGGAGTTCAGTGATGG+AGG 0.488272 7_3:-73338654 None:intergenic
AAGATGAAGGAGTTCAGTGA+TGG 0.494582 7_3:-73338657 None:intergenic
AGGTAATCTTTGATTCTTGA+GGG 0.502643 7_3:-73343746 None:intergenic
AGGAAGCAGTTCGTCGGTGA+TGG 0.513603 7_3:-73338625 None:intergenic
AAGAAACAAGCTCACGGACG+TGG 0.521086 7_3:+73343146 Msa1122820:CDS
AGTGATTGAGAAGAAGATGA+AGG 0.521549 7_3:-73338670 None:intergenic
AAGGTAATCTTTGATTCTTG+AGG 0.525330 7_3:-73343747 None:intergenic
GGAAGGTTGTTTCCCTTGGT+GGG 0.530525 7_3:+73343608 Msa1122820:CDS
AAGAGAACATAACAATAAGC+AGG 0.534086 7_3:+73343175 Msa1122820:CDS
AGGAAGGTTGTTTCCCTTGG+TGG 0.540449 7_3:+73343607 Msa1122820:CDS
TAAAGAAGTTGAATAACGTA+AGG 0.562313 7_3:-73344240 None:intergenic
TCGTCGGTGATGGAGAAGTT+CGG 0.566503 7_3:-73338615 None:intergenic
TTGAAGTCAACACCCACAAG+AGG 0.593893 7_3:+73344063 Msa1122820:CDS
TCAAAGATTACCTTTAAGTG+TGG 0.597312 7_3:+73343756 Msa1122820:CDS
GGTAATCTTTGATTCTTGAG+GGG 0.603282 7_3:-73343745 None:intergenic
GTGATGGAGAAGTTCGGTGA+CGG 0.609415 7_3:-73338609 None:intergenic
CCCACAAGAGGTCATGACAC+TGG 0.620094 7_3:+73344075 Msa1122820:CDS
TAGGCAACTCGCATATGACA+TGG 0.625414 7_3:+73343560 Msa1122820:intron
AGACCTCACCTTCCCACCAA+GGG 0.627792 7_3:-73343620 None:intergenic
TGAAGCAGGAAGCAGTTCGT+CGG 0.631936 7_3:-73338631 None:intergenic
AGAGGTTTGAAGTTAAGTGA+AGG 0.641153 7_3:+73344003 Msa1122820:CDS
TACAAGAAGAAACAAGCTCA+CGG 0.651983 7_3:+73343140 Msa1122820:CDS
TAGACCTCACCTTCCCACCA+AGG 0.660546 7_3:-73343621 None:intergenic
ACTAATGCACGAAATAGATG+GGG 0.669882 7_3:+73344357 Msa1122820:three_prime_UTR
AGCTGGAAAACACAAACCAG+AGG 0.689560 7_3:+73343978 Msa1122820:CDS
AAACACAAACCAGAGGACAG+AGG 0.717192 7_3:+73343985 Msa1122820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTAAAATTAAA+AGG + chr7_3:73340037-73340056 Msa1122820:intron 0.0%
!!! AATTTATTTTAAAATTAAAA+GGG + chr7_3:73340038-73340057 Msa1122820:intron 0.0%
!! ATAAATTAATAGTAACATTT+AGG - chr7_3:73340025-73340044 None:intergenic 10.0%
!! TATGTATATTATTTAGATTT+AGG + chr7_3:73342134-73342153 Msa1122820:intron 10.0%
!!! TCATTTCATTATTTTAAATT+TGG + chr7_3:73343450-73343469 Msa1122820:intron 10.0%
!!! CATTTCATTATTTTAAATTT+GGG + chr7_3:73343451-73343470 Msa1122820:intron 10.0%
!!! ATTTCATTATTTTAAATTTG+GGG + chr7_3:73343452-73343471 Msa1122820:intron 10.0%
!!! TTTTATAACTATTTTCTTCT+TGG + chr7_3:73340574-73340593 Msa1122820:intron 15.0%
!!! TTTATAACTATTTTCTTCTT+GGG + chr7_3:73340575-73340594 Msa1122820:intron 15.0%
!!! TACTATATTAGTTTATGTTT+CGG + chr7_3:73341314-73341333 Msa1122820:intron 15.0%
!!! AACTTTTGTTATTTATTGTT+AGG + chr7_3:73342074-73342093 Msa1122820:intron 15.0%
!! TTGAATAAACTTAACTAATA+AGG - chr7_3:73342197-73342216 None:intergenic 15.0%
!!! CCTAAAGATTTGATTTTTTT+CGG + chr7_3:73338832-73338851 Msa1122820:intron 20.0%
!!! TTTTGAGTGAAATACAAAAT+TGG + chr7_3:73338866-73338885 Msa1122820:intron 20.0%
!!! AACACTGTTTTTTTATGTTT+TGG + chr7_3:73338892-73338911 Msa1122820:intron 20.0%
!! CTTATTTGAGTAATTTATTC+TGG + chr7_3:73338997-73339016 Msa1122820:intron 20.0%
!! TAATTCGCTAAATTAAGATA+AGG - chr7_3:73339094-73339113 None:intergenic 20.0%
!! TTATATATTGATAAATTGCC+CGG - chr7_3:73339786-73339805 None:intergenic 20.0%
!! TCGTAACATGTAAAAAATTA+TGG - chr7_3:73339975-73339994 None:intergenic 20.0%
!! GAAAATTGAAGAACAATTTA+TGG - chr7_3:73340171-73340190 None:intergenic 20.0%
!!! TACAAAGAAATTTTCACTAA+CGG - chr7_3:73340240-73340259 None:intergenic 20.0%
!! ATTTCTTTGTAAACTAAGAT+TGG + chr7_3:73340249-73340268 Msa1122820:intron 20.0%
!! TAATTTAAAGGAGAGAAAAA+TGG - chr7_3:73340504-73340523 None:intergenic 20.0%
!!! TGATTAGTTTTATTAGACAA+TGG + chr7_3:73340536-73340555 Msa1122820:intron 20.0%
!!! TATTTTCACTAAAACAGAAA+AGG - chr7_3:73340610-73340629 None:intergenic 20.0%
!!! TTTTCTGTTTTAGTGAAAAT+AGG + chr7_3:73340609-73340628 Msa1122820:intron 20.0%
!! TATAATAGAGTGATAGAAAT+TGG + chr7_3:73341149-73341168 Msa1122820:intron 20.0%
!!! TAAAGTTTAGTTCTGTTATT+TGG + chr7_3:73341226-73341245 Msa1122820:intron 20.0%
!! CTAATATAGTATATGAAGTT+TGG - chr7_3:73341305-73341324 None:intergenic 20.0%
!! AATAAATGTGTAAACAGATT+AGG + chr7_3:73341540-73341559 Msa1122820:intron 20.0%
!!! TTTTGATTTTCTTCTTAACA+TGG - chr7_3:73341717-73341736 None:intergenic 20.0%
!! TAAGTTTATTCAAATTCCAA+CGG + chr7_3:73342204-73342223 Msa1122820:intron 20.0%
!! TGCTGGATATATTTATTAAT+TGG + chr7_3:73342257-73342276 Msa1122820:intron 20.0%
!! GGAATATTGTAAATTGATAT+CGG - chr7_3:73342283-73342302 None:intergenic 20.0%
!! ATTTGATCTATAATTTCTCT+GGG - chr7_3:73342304-73342323 None:intergenic 20.0%
!! AGAAATTATAGATCAAATCT+TGG + chr7_3:73342306-73342325 Msa1122820:intron 20.0%
!! GAAATTATAGATCAAATCTT+GGG + chr7_3:73342307-73342326 Msa1122820:intron 20.0%
!! TATAAGATTGATATTGAATG+CGG + chr7_3:73342333-73342352 Msa1122820:intron 20.0%
!! TTGAATATAGTAGAAGAAAA+AGG - chr7_3:73342583-73342602 None:intergenic 20.0%
!!! CGATTTTATGCTTTATTATT+GGG - chr7_3:73342635-73342654 None:intergenic 20.0%
!! AAATGAATGATTTAAAAGCT+TGG - chr7_3:73343012-73343031 None:intergenic 20.0%
!!! TTTCAATTTTCAGTAACTAT+GGG + chr7_3:73343110-73343129 Msa1122820:intron 20.0%
!! TAAAACATCCAATTCAAATT+TGG - chr7_3:73343408-73343427 None:intergenic 20.0%
!! TGTTGGAGTTAAATAATTTA+TGG + chr7_3:73343475-73343494 Msa1122820:intron 20.0%
!! AGTAGTCATTATAAAAAAGA+AGG - chr7_3:73343525-73343544 None:intergenic 20.0%
!! CAAAAATAGAACAAGATAAA+AGG - chr7_3:73344290-73344309 None:intergenic 20.0%
!!! TTCTATTTTTGTTTGTATAC+TGG + chr7_3:73344299-73344318 Msa1122820:three_prime_UTR 20.0%
!!! TTGTTCACTGATTTCATAAA+AGG + chr7_3:73338785-73338804 Msa1122820:intron 25.0%
! CCGAAAAAAATCAAATCTTT+AGG - chr7_3:73338835-73338854 None:intergenic 25.0%
!!! TGGGTTTTGTAATCAAAATT+AGG + chr7_3:73338935-73338954 Msa1122820:intron 25.0%
!!! GGGTTTTGTAATCAAAATTA+GGG + chr7_3:73338936-73338955 Msa1122820:intron 25.0%
! CTAAATTAAGATAAGGTGTA+TGG - chr7_3:73339087-73339106 None:intergenic 25.0%
!!! AGATTTTTTCTTCAGAGAAA+AGG - chr7_3:73339296-73339315 None:intergenic 25.0%
! TATTTAGTCACTCATTCAAT+TGG + chr7_3:73339430-73339449 Msa1122820:intron 25.0%
! TATGAAATGTGCATAAAAGT+GGG - chr7_3:73339949-73339968 None:intergenic 25.0%
!!! AAACTTCAAGTTGTTCTTAT+AGG - chr7_3:73340100-73340119 None:intergenic 25.0%
! TAACTTAGTCATTTCTCATA+AGG + chr7_3:73340273-73340292 Msa1122820:intron 25.0%
! GTAAATATTAGGCTAATTAG+TGG + chr7_3:73340339-73340358 Msa1122820:intron 25.0%
!! TATTCGCATTTTTATCATGT+TGG + chr7_3:73340888-73340907 Msa1122820:intron 25.0%
!! ATTCGCATTTTTATCATGTT+GGG + chr7_3:73340889-73340908 Msa1122820:intron 25.0%
! ATTGAATTACTTCATAAGCA+TGG + chr7_3:73341015-73341034 Msa1122820:intron 25.0%
! TAATGAGTTATGTTGTGAAA+AGG + chr7_3:73341066-73341085 Msa1122820:intron 25.0%
! TATTTGGATGAAATTTAGAC+AGG + chr7_3:73341242-73341261 Msa1122820:intron 25.0%
! TACTTATCAGATGAAAAGAA+TGG + chr7_3:73341265-73341284 Msa1122820:intron 25.0%
! TATGTTTCGGATGAATTAAT+TGG + chr7_3:73341327-73341346 Msa1122820:intron 25.0%
!!! AATTGGTTTTAAATAGACGA+AGG + chr7_3:73341344-73341363 Msa1122820:intron 25.0%
! AATATGGAAAATAATACACG+AGG - chr7_3:73341392-73341411 None:intergenic 25.0%
!! GTGTATTATTTTCCATATTC+TGG + chr7_3:73341393-73341412 Msa1122820:intron 25.0%
!! ATTATTTTCCATATTCTGGA+TGG + chr7_3:73341397-73341416 Msa1122820:intron 25.0%
! TACTACAGTACACAATATAT+AGG - chr7_3:73341461-73341480 None:intergenic 25.0%
! AACCAAGATATAAGTTGTTA+AGG + chr7_3:73341574-73341593 Msa1122820:intron 25.0%
! ACCAAGATATAAGTTGTTAA+GGG + chr7_3:73341575-73341594 Msa1122820:intron 25.0%
! TATTATTACGCAAAGTTGTA+TGG + chr7_3:73341780-73341799 Msa1122820:intron 25.0%
! ATTAATGCAACAATCATAAG+AGG - chr7_3:73341808-73341827 None:intergenic 25.0%
! ATCTGAAAACAATAACAATG+GGG - chr7_3:73341928-73341947 None:intergenic 25.0%
! CATCTGAAAACAATAACAAT+GGG - chr7_3:73341929-73341948 None:intergenic 25.0%
! TCATCTGAAAACAATAACAA+TGG - chr7_3:73341930-73341949 None:intergenic 25.0%
! TAACTAAAGATTGAAATTGC+TGG + chr7_3:73342240-73342259 Msa1122820:intron 25.0%
! GATTTGATCTATAATTTCTC+TGG - chr7_3:73342305-73342324 None:intergenic 25.0%
!! TATGCTTTATTATTGGGATT+TGG - chr7_3:73342629-73342648 None:intergenic 25.0%
!!! GCGATTTTATGCTTTATTAT+TGG - chr7_3:73342636-73342655 None:intergenic 25.0%
!!! CTCATTTTTACAATAGCTTA+GGG - chr7_3:73342729-73342748 None:intergenic 25.0%
!!! TCTCATTTTTACAATAGCTT+AGG - chr7_3:73342730-73342749 None:intergenic 25.0%
! AAGCTATTGTAAAAATGAGA+AGG + chr7_3:73342730-73342749 Msa1122820:intron 25.0%
! AGCTATTGTAAAAATGAGAA+GGG + chr7_3:73342731-73342750 Msa1122820:intron 25.0%
! TTATCCCTAAAAGTGAAATA+AGG - chr7_3:73342835-73342854 None:intergenic 25.0%
! TAAAGGAAAACAATCAACTA+AGG - chr7_3:73342861-73342880 None:intergenic 25.0%
!!! ATGCTTATTTCTATTTAGTC+AGG + chr7_3:73342945-73342964 Msa1122820:intron 25.0%
!!! TCATGTTTTGTTTTTGTTTG+TGG + chr7_3:73343064-73343083 Msa1122820:intron 25.0%
!!! CATGTTTTGTTTTTGTTTGT+GGG + chr7_3:73343065-73343084 Msa1122820:intron 25.0%
!! CTTTCAATTTTCAGTAACTA+TGG + chr7_3:73343109-73343128 Msa1122820:intron 25.0%
!! TAGAGAAAATACTGAAGTTT+TGG - chr7_3:73343238-73343257 None:intergenic 25.0%
! CATCATTGATCATATATTTG+AGG - chr7_3:73343341-73343360 None:intergenic 25.0%
! TGATAAGACCAAATTTGAAT+TGG + chr7_3:73343397-73343416 Msa1122820:intron 25.0%
!!! TTATTTTAAATTTGGGGTGT+TGG + chr7_3:73343458-73343477 Msa1122820:intron 25.0%
! TACTCATTGCAATATATCTT+AGG + chr7_3:73343541-73343560 Msa1122820:intron 25.0%
! TATCATGTTCTATTTGCAAA+TGG + chr7_3:73343666-73343685 Msa1122820:intron 25.0%
!!! TGTTTTTGTTTCTTCATCAT+TGG - chr7_3:73343787-73343806 None:intergenic 25.0%
! TGATAGAATTAATTACCTCT+TGG - chr7_3:73343828-73343847 None:intergenic 25.0%
! AGTTGTACAAACAAATAAAG+AGG - chr7_3:73343855-73343874 None:intergenic 25.0%
! GGAAAAAATATGTCAAATAC+AGG + chr7_3:73344096-73344115 Msa1122820:CDS 25.0%
! TCAAATACAGGAAAAAGAAA+AGG + chr7_3:73344108-73344127 Msa1122820:CDS 25.0%
! AACTGGAAACATGATAAAAA+GGG + chr7_3:73344135-73344154 Msa1122820:CDS 25.0%
! CTGTATGATCTTTATAAATC+TGG + chr7_3:73344211-73344230 Msa1122820:three_prime_UTR 25.0%
! TAAAGAAGTTGAATAACGTA+AGG - chr7_3:73344243-73344262 None:intergenic 25.0%
! ACGTTATTCAACTTCTTTAT+AGG + chr7_3:73344244-73344263 Msa1122820:three_prime_UTR 25.0%
!!! AAATGAAGCTTGTTTTGTGA+TGG + chr7_3:73338915-73338934 Msa1122820:intron 30.0%
!!! AATGAAGCTTGTTTTGTGAT+GGG + chr7_3:73338916-73338935 Msa1122820:intron 30.0%
CATTGAAACTTCAGATTGAA+TGG + chr7_3:73339221-73339240 Msa1122820:intron 30.0%
TCTACCATGTTTAGTTAACA+CGG - chr7_3:73339376-73339395 None:intergenic 30.0%
! TATTTAAGTTCCCATTCGAT+TGG + chr7_3:73339469-73339488 Msa1122820:intron 30.0%
! ATTTAAGTTCCCATTCGATT+GGG + chr7_3:73339470-73339489 Msa1122820:intron 30.0%
AAACATGGCAGAAAAAATGT+AGG - chr7_3:73339539-73339558 None:intergenic 30.0%
TGCATAAAAGTGGGAATAAA+TGG - chr7_3:73339940-73339959 None:intergenic 30.0%
CTATGAAATGTGCATAAAAG+TGG - chr7_3:73339950-73339969 None:intergenic 30.0%
! TAGGATTCTTTAACTTCTGT+CGG - chr7_3:73340081-73340100 None:intergenic 30.0%
GAACAATTTATGGTAGAAGT+TGG - chr7_3:73340161-73340180 None:intergenic 30.0%
! AATTTTCACTAACGGAACAA+TGG - chr7_3:73340232-73340251 None:intergenic 30.0%
TTAGTCATTTCTCATAAGGA+TGG + chr7_3:73340277-73340296 Msa1122820:intron 30.0%
ATAAGGATGGAAAGATATCT+TGG + chr7_3:73340290-73340309 Msa1122820:intron 30.0%
!!! TTGGTCATTTTAACTACTAG+TGG + chr7_3:73340309-73340328 Msa1122820:intron 30.0%
GTGGCATTCTAGTAAATATT+AGG + chr7_3:73340328-73340347 Msa1122820:intron 30.0%
TAGCTTCAATTGAAGGATTT+GGG - chr7_3:73340434-73340453 None:intergenic 30.0%
TTAGCTTCAATTGAAGGATT+TGG - chr7_3:73340435-73340454 None:intergenic 30.0%
! TTCTCTTTAGCTTCAATTGA+AGG - chr7_3:73340441-73340460 None:intergenic 30.0%
!!! TCTGTTTTAGTGAAAATAGG+TGG + chr7_3:73340612-73340631 Msa1122820:intron 30.0%
ATCTTACTAGCATAAAACTG+AGG + chr7_3:73340677-73340696 Msa1122820:intron 30.0%
GCTAAGGCTTAATAATCAAA+TGG - chr7_3:73340821-73340840 None:intergenic 30.0%
!! AGATTGTTTAGCTCTAAAGA+AGG + chr7_3:73341103-73341122 Msa1122820:intron 30.0%
AATAGAGTGATAGAAATTGG+AGG + chr7_3:73341152-73341171 Msa1122820:intron 30.0%
ACCCTTAACAACTTATATCT+TGG - chr7_3:73341579-73341598 None:intergenic 30.0%
TTGAATTTGAGTAGAAGAGT+CGG + chr7_3:73341618-73341637 Msa1122820:intron 30.0%
TGTTGCATTAATGTTAGTGT+TGG + chr7_3:73341816-73341835 Msa1122820:intron 30.0%
GTTGCATTAATGTTAGTGTT+GGG + chr7_3:73341817-73341836 Msa1122820:intron 30.0%
TTAGACTCTATCTGATGATT+AGG + chr7_3:73341851-73341870 Msa1122820:intron 30.0%
TCTGAAAACAATAACAATGG+GGG - chr7_3:73341927-73341946 None:intergenic 30.0%
! ATAGGTCACAATTAGTTTAG+TGG + chr7_3:73342370-73342389 Msa1122820:intron 30.0%
GGTAAAGTAATGGTTTGAAT+TGG + chr7_3:73342398-73342417 Msa1122820:intron 30.0%
ACTATTAGTAATGTGGCAAA+TGG + chr7_3:73342463-73342482 Msa1122820:intron 30.0%
ATAGTAGAAGAAAAAGGCAA+AGG - chr7_3:73342577-73342596 None:intergenic 30.0%
! GGAAAATTCTAAAAACTGAC+TGG - chr7_3:73342608-73342627 None:intergenic 30.0%
GCTATTGTAAAAATGAGAAG+GGG + chr7_3:73342732-73342751 Msa1122820:intron 30.0%
CTATTGTAAAAATGAGAAGG+GGG + chr7_3:73342733-73342752 Msa1122820:intron 30.0%
TATTGTAAAAATGAGAAGGG+GGG + chr7_3:73342734-73342753 Msa1122820:intron 30.0%
!!! CCAAGTATTTTGACATCTAT+CGG - chr7_3:73342810-73342829 None:intergenic 30.0%
CCATTCAACTACTAGATTAA+AGG - chr7_3:73342878-73342897 None:intergenic 30.0%
CCTTTAATCTAGTAGTTGAA+TGG + chr7_3:73342875-73342894 Msa1122820:intron 30.0%
TGTTGTATGTATCTATCACA+TGG + chr7_3:73342898-73342917 Msa1122820:intron 30.0%
!! CTTATTTCTATTTAGTCAGG+AGG + chr7_3:73342948-73342967 Msa1122820:intron 30.0%
TTGAAAGAGAGAAGATGTAA+GGG - chr7_3:73343096-73343115 None:intergenic 30.0%
ATTGAAAGAGAGAAGATGTA+AGG - chr7_3:73343097-73343116 None:intergenic 30.0%
TTATTGTTATGTTCTCTTGG+AGG - chr7_3:73343173-73343192 None:intergenic 30.0%
TGCTTATTGTTATGTTCTCT+TGG - chr7_3:73343176-73343195 None:intergenic 30.0%
AAGAGAACATAACAATAAGC+AGG + chr7_3:73343175-73343194 Msa1122820:CDS 30.0%
CAATAAGCAGGAAAATGAAA+TGG + chr7_3:73343187-73343206 Msa1122820:CDS 30.0%
AAAAAAGAAGGTAACAAACC+AGG - chr7_3:73343513-73343532 None:intergenic 30.0%
AATGGTATTATCACAATGCT+CGG + chr7_3:73343684-73343703 Msa1122820:intron 30.0%
AGGTAATCTTTGATTCTTGA+GGG - chr7_3:73343749-73343768 None:intergenic 30.0%
AAGGTAATCTTTGATTCTTG+AGG - chr7_3:73343750-73343769 None:intergenic 30.0%
TCAAAGATTACCTTTAAGTG+TGG + chr7_3:73343756-73343775 Msa1122820:CDS 30.0%
TGATGAAGAAACAAAAACAG+AGG + chr7_3:73343788-73343807 Msa1122820:CDS 30.0%
GATGAAGAAACAAAAACAGA+GGG + chr7_3:73343789-73343808 Msa1122820:CDS 30.0%
TGTACAAACAAATAAAGAGG+AGG - chr7_3:73343852-73343871 None:intergenic 30.0%
! AGTGAAGGTCGATTTAAAAA+TGG + chr7_3:73344018-73344037 Msa1122820:CDS 30.0%
AATACAGGAAAAAGAAAAGG+AGG + chr7_3:73344111-73344130 Msa1122820:CDS 30.0%
CAACTGGAAACATGATAAAA+AGG + chr7_3:73344134-73344153 Msa1122820:CDS 30.0%
AACTAATGCACGAAATAGAT+GGG + chr7_3:73344356-73344375 Msa1122820:three_prime_UTR 30.0%
AGTGATTGAGAAGAAGATGA+AGG - chr7_3:73338673-73338692 None:intergenic 35.0%
TCAAAGCAAGTGAACAGTAA+AGG - chr7_3:73338718-73338737 None:intergenic 35.0%
! GTTTTGTGTTGAGCTGTATA+TGG + chr7_3:73338759-73338778 Msa1122820:intron 35.0%
!! TGAAGCTTTGAACTGAATGA+TGG + chr7_3:73338808-73338827 Msa1122820:intron 35.0%
TAGCTAAACCAAAACACACA+AGG - chr7_3:73338967-73338986 None:intergenic 35.0%
TTCCTAACACTTCAATGACT+CGG + chr7_3:73339155-73339174 Msa1122820:intron 35.0%
GTTTGATGTCTGACATTTGT+TGG + chr7_3:73339245-73339264 Msa1122820:intron 35.0%
ATTTGTGTCCTGTTTGTCTT+TGG - chr7_3:73339273-73339292 None:intergenic 35.0%
! TAGAGATTTAGAGTCAGTCA+TGG + chr7_3:73339319-73339338 Msa1122820:intron 35.0%
CTACCATGTTTAGTTAACAC+GGG - chr7_3:73339375-73339394 None:intergenic 35.0%
! TTTAAGTTCCCATTCGATTG+GGG + chr7_3:73339471-73339490 Msa1122820:intron 35.0%
!!! GTGGTGTTTTTAGGTGTTTT+CGG + chr7_3:73339651-73339670 Msa1122820:intron 35.0%
!!! TTTTTTCCCCTTCTGTTTTG+CGG + chr7_3:73339678-73339697 Msa1122820:intron 35.0%
AACAAAACCGCAAAACAGAA+GGG - chr7_3:73339688-73339707 None:intergenic 35.0%
!!! TTCTGTTTTGCGGTTTTGTT+GGG + chr7_3:73339688-73339707 Msa1122820:intron 35.0%
!!! GGTTTTGAAACGTTAACCAA+GGG - chr7_3:73339868-73339887 None:intergenic 35.0%
!!! TGGTTTTGAAACGTTAACCA+AGG - chr7_3:73339869-73339888 None:intergenic 35.0%
TGTGAGTAATCATGCATTGA+TGG - chr7_3:73339889-73339908 None:intergenic 35.0%
! AGGATTCTTTAACTTCTGTC+GGG - chr7_3:73340080-73340099 None:intergenic 35.0%
ATGGTAGAAGTTGGAACAAA+TGG - chr7_3:73340152-73340171 None:intergenic 35.0%
! GGTTTGAGACTTAGATTAGA+TGG + chr7_3:73340633-73340652 Msa1122820:intron 35.0%
TGAAGTCAATTCCTTCCTAT+AGG - chr7_3:73340988-73341007 None:intergenic 35.0%
CATAAGCATGGTATGATAGT+AGG + chr7_3:73341027-73341046 Msa1122820:intron 35.0%
!!! GGTTTTAAATAGACGAAGGA+TGG + chr7_3:73341348-73341367 Msa1122820:intron 35.0%
ACAGGTTAACAAACGAACAA+TGG + chr7_3:73341424-73341443 Msa1122820:intron 35.0%
TGTCAACTGATTATTCTGAC+AGG + chr7_3:73341483-73341502 Msa1122820:intron 35.0%
TATCCAACTTATCCATCTGT+CGG - chr7_3:73341676-73341695 None:intergenic 35.0%
TCTTCTTAACATGGATAAGC+CGG - chr7_3:73341708-73341727 None:intergenic 35.0%
AACACGTACACAAAGGTAAA+AGG + chr7_3:73341949-73341968 Msa1122820:intron 35.0%
TCCATAGCAGAGTTATTCAT+CGG - chr7_3:73341977-73341996 None:intergenic 35.0%
AAGGTAGCTCAAGTATACTT+GGG - chr7_3:73342178-73342197 None:intergenic 35.0%
TAAGGTAGCTCAAGTATACT+TGG - chr7_3:73342179-73342198 None:intergenic 35.0%
GTTTATTCAAATTCCAACGG+TGG + chr7_3:73342207-73342226 Msa1122820:intron 35.0%
! ACAATTAGTTTAGTGGTGGA+TGG + chr7_3:73342377-73342396 Msa1122820:intron 35.0%
ATGGTTTGAATTGGAGTTGA+TGG + chr7_3:73342407-73342426 Msa1122820:intron 35.0%
! TGGAAAATCATATGCCCTTT+TGG + chr7_3:73342483-73342502 Msa1122820:intron 35.0%
ATGAGTCATAAGGTCCAAAA+GGG - chr7_3:73342500-73342519 None:intergenic 35.0%
AATGAGTCATAAGGTCCAAA+AGG - chr7_3:73342501-73342520 None:intergenic 35.0%
! TGGACCTTATGACTCATTTT+AGG + chr7_3:73342503-73342522 Msa1122820:intron 35.0%
! GGACCTTATGACTCATTTTA+GGG + chr7_3:73342504-73342523 Msa1122820:intron 35.0%
AGACCCTAAAATGAGTCATA+AGG - chr7_3:73342510-73342529 None:intergenic 35.0%
! ACAAGTTCTTGTCCATCTTT+TGG + chr7_3:73342536-73342555 Msa1122820:intron 35.0%
CCGATAGATGTCAAAATACT+TGG + chr7_3:73342807-73342826 Msa1122820:intron 35.0%
!! TGGCACCTTATTTCACTTTT+AGG + chr7_3:73342827-73342846 Msa1122820:intron 35.0%
!! GGCACCTTATTTCACTTTTA+GGG + chr7_3:73342828-73342847 Msa1122820:intron 35.0%
TGAAAGAGAGAAGATGTAAG+GGG - chr7_3:73343095-73343114 None:intergenic 35.0%
TACAAGAAGAAACAAGCTCA+CGG + chr7_3:73343140-73343159 Msa1122820:CDS 35.0%
AGGAAAATGAAATGGACATC+AGG + chr7_3:73343195-73343214 Msa1122820:CDS 35.0%
AATGGACATCAGGAAGATTA+TGG + chr7_3:73343205-73343224 Msa1122820:CDS 35.0%
TTATGGTAAGCATATTCACC+TGG + chr7_3:73343492-73343511 Msa1122820:intron 35.0%
GAATAAGAGCAGATGAAACA+CGG - chr7_3:73343723-73343742 None:intergenic 35.0%
GGTAATCTTTGATTCTTGAG+GGG - chr7_3:73343748-73343767 None:intergenic 35.0%
GCACAAGTGGTACATATATA+AGG - chr7_3:73343895-73343914 None:intergenic 35.0%
!!! GTATGATTCTAGGACGTTTT+GGG + chr7_3:73343923-73343942 Msa1122820:CDS 35.0%
!!! TATGATTCTAGGACGTTTTG+GGG + chr7_3:73343924-73343943 Msa1122820:CDS 35.0%
! AGAGGTTTGAAGTTAAGTGA+AGG + chr7_3:73344003-73344022 Msa1122820:CDS 35.0%
TGGAAACATGATAAAAAGGG+TGG + chr7_3:73344138-73344157 Msa1122820:CDS 35.0%
AAACATGATAAAAAGGGTGG+TGG + chr7_3:73344141-73344160 Msa1122820:CDS 35.0%
!!! GACCTTCTTTTTTTGACGTT+TGG + chr7_3:73344327-73344346 Msa1122820:three_prime_UTR 35.0%
CACCAAACGTCAAAAAAAGA+AGG - chr7_3:73344332-73344351 None:intergenic 35.0%
GAACTAATGCACGAAATAGA+TGG + chr7_3:73344355-73344374 Msa1122820:three_prime_UTR 35.0%
AAGATGAAGGAGTTCAGTGA+TGG - chr7_3:73338660-73338679 None:intergenic 40.0%
CAATCACTCTTCTGATTCTC+CGG + chr7_3:73338685-73338704 Msa1122820:five_prime_UTR 40.0%
GCAAGTGAACAGTAAAGGAA+CGG - chr7_3:73338713-73338732 None:intergenic 40.0%
! GGTACTAAGTGTGGATTGAA+GGG - chr7_3:73339066-73339085 None:intergenic 40.0%
! TGGTACTAAGTGTGGATTGA+AGG - chr7_3:73339067-73339086 None:intergenic 40.0%
AAGGTGTATGGTACTAAGTG+TGG - chr7_3:73339075-73339094 None:intergenic 40.0%
! TACCGAGTCATTGAAGTGTT+AGG - chr7_3:73339160-73339179 None:intergenic 40.0%
! TCAATGCTACTTAGCATGTG+AGG - chr7_3:73339207-73339226 None:intergenic 40.0%
!! CAGTCATGGTGTTGATACAT+AGG + chr7_3:73339333-73339352 Msa1122820:intron 40.0%
TAGCCCGTGTTAACTAAACA+TGG + chr7_3:73339369-73339388 Msa1122820:intron 40.0%
!!! GTTATGAGTGCTGTTTTTCG+CGG + chr7_3:73339509-73339528 Msa1122820:intron 40.0%
! GCTATCTTTGTGTTGCTGTT+CGG + chr7_3:73339583-73339602 Msa1122820:intron 40.0%
!!! TGTTTTTAGGTGTTTTCGGC+TGG + chr7_3:73339655-73339674 Msa1122820:intron 40.0%
ACAAAACCGCAAAACAGAAG+GGG - chr7_3:73339687-73339706 None:intergenic 40.0%
CAACAAAACCGCAAAACAGA+AGG - chr7_3:73339689-73339708 None:intergenic 40.0%
!! CTTCTGTTTTGCGGTTTTGT+TGG + chr7_3:73339687-73339706 Msa1122820:intron 40.0%
!!! TCTGTTTTGCGGTTTTGTTG+GGG + chr7_3:73339689-73339708 Msa1122820:intron 40.0%
! CAATCCTCAACTGATTCACA+TGG + chr7_3:73339830-73339849 Msa1122820:intron 40.0%
AAAGCCATGTGAATCAGTTG+AGG - chr7_3:73339837-73339856 None:intergenic 40.0%
AAGGATTTGGGTGGAAGATT+GGG - chr7_3:73340422-73340441 None:intergenic 40.0%
CTTCAATTGAAGGATTTGGG+TGG - chr7_3:73340431-73340450 None:intergenic 40.0%
ACTAGCATAAAACTGAGGAG+AGG + chr7_3:73340682-73340701 Msa1122820:intron 40.0%
TTGTTGAAGTGTGTGTACTG+TGG - chr7_3:73340733-73340752 None:intergenic 40.0%
GTCTGCTTCCATTAGTAGAA+TGG + chr7_3:73340754-73340773 Msa1122820:intron 40.0%
TCTACAATCTACAGACGCTA+AGG - chr7_3:73340837-73340856 None:intergenic 40.0%
ATTCCTTCCTATAGGCCTAT+TGG - chr7_3:73340980-73340999 None:intergenic 40.0%
CTGTCAATCCATCCAGAATA+TGG - chr7_3:73341408-73341427 None:intergenic 40.0%
!! CATATTCTGGATGGATTGAC+AGG + chr7_3:73341406-73341425 Msa1122820:intron 40.0%
TTTGAGTAGAAGAGTCGGAA+AGG + chr7_3:73341623-73341642 Msa1122820:intron 40.0%
! TAGAAGAGTCGGAAAGGTAT+TGG + chr7_3:73341629-73341648 Msa1122820:intron 40.0%
AACTTATCCATCTGTCGGTA+AGG - chr7_3:73341671-73341690 None:intergenic 40.0%
TTACCGACAGATGGATAAGT+TGG + chr7_3:73341670-73341689 Msa1122820:intron 40.0%
GTGAGGTCTACTTATTTCAG+TGG - chr7_3:73341905-73341924 None:intergenic 40.0%
AAACAATAACAATGGGGGTG+AGG - chr7_3:73341922-73341941 None:intergenic 40.0%
TCAGATGAACACGTACACAA+AGG + chr7_3:73341942-73341961 Msa1122820:intron 40.0%
TTACAAGCTTAAACCACCGT+TGG - chr7_3:73342223-73342242 None:intergenic 40.0%
! GGTCACAATTAGTTTAGTGG+TGG + chr7_3:73342373-73342392 Msa1122820:intron 40.0%
!! AGTGGTGGATGGTAAAGTAA+TGG + chr7_3:73342388-73342407 Msa1122820:intron 40.0%
!! GTTTGAATTGGAGTTGATGG+TGG + chr7_3:73342410-73342429 Msa1122820:intron 40.0%
!! ATGTGGTTGGTGTTGAGTAA+CGG + chr7_3:73342437-73342456 Msa1122820:intron 40.0%
ACGGGTCACTATTAGTAATG+TGG + chr7_3:73342456-73342475 Msa1122820:intron 40.0%
CGAGATAGAAGTCCAAAAGA+TGG - chr7_3:73342551-73342570 None:intergenic 40.0%
GTCGTAGTACATGTATGAAG+AGG + chr7_3:73342985-73343004 Msa1122820:intron 40.0%
GAAGAAACAAAAACAGAGGG+AGG + chr7_3:73343792-73343811 Msa1122820:CDS 40.0%
TCCTAGAATCATACGCTGAA+AGG - chr7_3:73343917-73343936 None:intergenic 40.0%
!!! CGTATGATTCTAGGACGTTT+TGG + chr7_3:73343922-73343941 Msa1122820:CDS 40.0%
!!! ATGATTCTAGGACGTTTTGG+GGG + chr7_3:73343925-73343944 Msa1122820:CDS 40.0%
GAAAAAGAAAAGGAGGCAAC+TGG + chr7_3:73344118-73344137 Msa1122820:CDS 40.0%
! TAAAAAGGGTGGTGGTAAGA+AGG + chr7_3:73344149-73344168 Msa1122820:CDS 40.0%
ATGAAGGAGTTCAGTGATGG+AGG - chr7_3:73338657-73338676 None:intergenic 45.0%
GAACAGTAAAGGAACGGTAC+CGG - chr7_3:73338707-73338726 None:intergenic 45.0%
!! GGGTTAAGCCTTGTGTGTTT+TGG + chr7_3:73338956-73338975 Msa1122820:intron 45.0%
TGAGGATCAACAGCAGACTT+TGG - chr7_3:73339189-73339208 None:intergenic 45.0%
!! TGTTGGTGCCAAAGACAAAC+AGG + chr7_3:73339262-73339281 Msa1122820:intron 45.0%
GAAGCACAGAGGCTAAAACA+TGG - chr7_3:73339554-73339573 None:intergenic 45.0%
!! AGGAAAGGTGTCGACAGTTT+AGG + chr7_3:73339618-73339637 Msa1122820:intron 45.0%
!! GGAAAGGTGTCGACAGTTTA+GGG + chr7_3:73339619-73339638 Msa1122820:intron 45.0%
!! GAAAGGTGTCGACAGTTTAG+GGG + chr7_3:73339620-73339639 Msa1122820:intron 45.0%
!! AAAGGTGTCGACAGTTTAGG+GGG + chr7_3:73339621-73339640 Msa1122820:intron 45.0%
ACTTCCACGTAGAACCTTCA+CGG + chr7_3:73340199-73340218 Msa1122820:intron 45.0%
AGGATTTGGGTGGAAGATTG+GGG - chr7_3:73340421-73340440 None:intergenic 45.0%
GAAGGATTTGGGTGGAAGAT+TGG - chr7_3:73340423-73340442 None:intergenic 45.0%
! GAGAGGTGAGCTTTTCTGAT+TGG + chr7_3:73340699-73340718 Msa1122820:intron 45.0%
CTGCAACGCCATTCTACTAA+TGG - chr7_3:73340765-73340784 None:intergenic 45.0%
CATTAGTAGAATGGCGTTGC+AGG + chr7_3:73340763-73340782 Msa1122820:intron 45.0%
AAGTTGGATATCCTCACGTC+CGG + chr7_3:73341686-73341705 Msa1122820:intron 45.0%
GCCGATGAATAACTCTGCTA+TGG + chr7_3:73341973-73341992 Msa1122820:intron 45.0%
! GCGGTTGATGTTTGAGCAAT+AGG + chr7_3:73342352-73342371 Msa1122820:intron 45.0%
!! GAGTTGATGGTGGTTGAATG+TGG + chr7_3:73342420-73342439 Msa1122820:intron 45.0%
!! TGATGGTGGTTGAATGTGGT+TGG + chr7_3:73342424-73342443 Msa1122820:intron 45.0%
!! TGTGGTTGGTGTTGAGTAAC+GGG + chr7_3:73342438-73342457 Msa1122820:intron 45.0%
TAGGCAACTCGCATATGACA+TGG + chr7_3:73343560-73343579 Msa1122820:intron 45.0%
! GATAGGAAGGTTGTTTCCCT+TGG + chr7_3:73343604-73343623 Msa1122820:CDS 45.0%
ATTGGTCGTGCCACACTTAA+AGG - chr7_3:73343769-73343788 None:intergenic 45.0%
GGAGGAAAAAATGCTCCAAG+AGG + chr7_3:73343810-73343829 Msa1122820:CDS 45.0%
GCCTTTCAGCGTATGATTCT+AGG + chr7_3:73343913-73343932 Msa1122820:intron 45.0%
AGCAGCAGTAAAAAACCAGC+TGG + chr7_3:73343961-73343980 Msa1122820:CDS 45.0%
!! TCTGGTTTGTGTTTTCCAGC+TGG - chr7_3:73343979-73343998 None:intergenic 45.0%
AGCTGGAAAACACAAACCAG+AGG + chr7_3:73343978-73343997 Msa1122820:CDS 45.0%
AAACACAAACCAGAGGACAG+AGG + chr7_3:73343985-73344004 Msa1122820:CDS 45.0%
AACTTCAAACCTCTGTCCTC+TGG - chr7_3:73343997-73344016 None:intergenic 45.0%
TTGAAGTCAACACCCACAAG+AGG + chr7_3:73344063-73344082 Msa1122820:CDS 45.0%
!! AAATTAATAAGATAATTTAA+AGG - chr7_3:73340516-73340535 None:intergenic 5.0%
!! ATTATAAGATAATAAAAATT+AGG - chr7_3:73341135-73341154 None:intergenic 5.0%
! GTGATGGAGAAGTTCGGTGA+CGG - chr7_3:73338612-73338631 None:intergenic 50.0%
!! TCGTCGGTGATGGAGAAGTT+CGG - chr7_3:73338618-73338637 None:intergenic 50.0%
TGAAGCAGGAAGCAGTTCGT+CGG - chr7_3:73338634-73338653 None:intergenic 50.0%
! TTCAGTGATGGAGGTGAAGC+AGG - chr7_3:73338648-73338667 None:intergenic 50.0%
ACCACTCACCCCAATCGAAT+GGG - chr7_3:73339482-73339501 None:intergenic 50.0%
! GCCTCTGTGCTTCTGTGTTT+TGG + chr7_3:73339561-73339580 Msa1122820:intron 50.0%
! GCCAAAACACAGAAGCACAG+AGG - chr7_3:73339565-73339584 None:intergenic 50.0%
TCGACACCTTTCCTGTCAAG+TGG - chr7_3:73339612-73339631 None:intergenic 50.0%
!! AAGGTGTCGACAGTTTAGGG+GGG + chr7_3:73339622-73339641 Msa1122820:intron 50.0%
! GGGCTGTGTGTGGTGTTTTT+AGG + chr7_3:73339642-73339661 Msa1122820:intron 50.0%
!!! CGGTTTTGTTGGGGTTTACC+TGG + chr7_3:73339698-73339717 Msa1122820:intron 50.0%
GCTAGCTAAACAGAACAGCC+AGG - chr7_3:73339719-73339738 None:intergenic 50.0%
GCTAGCTCATCCGAGTGTAA+TGG + chr7_3:73339733-73339752 Msa1122820:intron 50.0%
GGGACAACAGCCATTACACT+CGG - chr7_3:73339746-73339765 None:intergenic 50.0%
!! CGGCACAAGAAGTGCTAAAC+GGG - chr7_3:73339766-73339785 None:intergenic 50.0%
!! CCGGCACAAGAAGTGCTAAA+CGG - chr7_3:73339767-73339786 None:intergenic 50.0%
CCGTTTAGCACTTCTTGTGC+CGG + chr7_3:73339764-73339783 Msa1122820:intron 50.0%
CGTTTAGCACTTCTTGTGCC+GGG + chr7_3:73339765-73339784 Msa1122820:intron 50.0%
! ATGGCTTTTGTTGCAGCCCT+TGG + chr7_3:73339849-73339868 Msa1122820:intron 50.0%
ACAATGGTAGCTAGCCGTGA+AGG - chr7_3:73340216-73340235 None:intergenic 50.0%
GTTTGTGAGGCTACAGGTGA+GGG - chr7_3:73340392-73340411 None:intergenic 50.0%
ATGAGGGTTTGTGAGGCTAC+AGG - chr7_3:73340398-73340417 None:intergenic 50.0%
ATTGGGGATGAGGGTTTGTG+AGG - chr7_3:73340362-73340381 None:intergenic 50.0%
TCTAACGCCTTACCGACAGA+TGG + chr7_3:73341661-73341680 Msa1122820:intron 50.0%
AAGAAACAAGCTCACGGACG+TGG + chr7_3:73343146-73343165 Msa1122820:CDS 50.0%
! AGGAAGGTTGTTTCCCTTGG+TGG + chr7_3:73343607-73343626 Msa1122820:CDS 50.0%
! GGAAGGTTGTTTCCCTTGGT+GGG + chr7_3:73343608-73343627 Msa1122820:CDS 50.0%
! CATACGCTGAAAGGCACAAG+TGG - chr7_3:73343908-73343927 None:intergenic 50.0%
!!! TCTAGGACGTTTTGGGGGAA+AGG + chr7_3:73343930-73343949 Msa1122820:CDS 50.0%
CCAGTGTCATGACCTCTTGT+GGG - chr7_3:73344078-73344097 None:intergenic 50.0%
TCCAGTGTCATGACCTCTTG+TGG - chr7_3:73344079-73344098 None:intergenic 50.0%
AGGAAGCAGTTCGTCGGTGA+TGG - chr7_3:73338628-73338647 None:intergenic 55.0%
TCCCATTCGATTGGGGTGAG+TGG + chr7_3:73339478-73339497 Msa1122820:intron 55.0%
CACCACTCACCCCAATCGAA+TGG - chr7_3:73339483-73339502 None:intergenic 55.0%
TCGATTGGGGTGAGTGGTGA+TGG + chr7_3:73339484-73339503 Msa1122820:intron 55.0%
! CTGTTCGGATGCCACTTGAC+AGG + chr7_3:73339598-73339617 Msa1122820:intron 55.0%
! CGGATGCCACTTGACAGGAA+AGG + chr7_3:73339603-73339622 Msa1122820:intron 55.0%
CTAGCCGTGAAGGTTCTACG+TGG - chr7_3:73340206-73340225 None:intergenic 55.0%
GGAGAGAGGATTGGGGATGA+GGG - chr7_3:73340371-73340390 None:intergenic 55.0%
AGGTGAGGGAGAGAGGATTG+GGG - chr7_3:73340378-73340397 None:intergenic 55.0%
CAGGTGAGGGAGAGAGGATT+GGG - chr7_3:73340379-73340398 None:intergenic 55.0%
ACAGGTGAGGGAGAGAGGAT+TGG - chr7_3:73340380-73340399 None:intergenic 55.0%
GGTTTGTGAGGCTACAGGTG+AGG - chr7_3:73340393-73340412 None:intergenic 55.0%
GGGTGGAAGATTGGGGATGA+GGG - chr7_3:73340414-73340433 None:intergenic 55.0%
TGGGTGGAAGATTGGGGATG+AGG - chr7_3:73340415-73340434 None:intergenic 55.0%
GTGTGTGTGTGTGCATGCTG+CGG + chr7_3:73340954-73340973 Msa1122820:intron 55.0%
CGGCCAATAGGCCTATAGGA+AGG + chr7_3:73340974-73340993 Msa1122820:intron 55.0%
ACATGGATAAGCCGGACGTG+AGG - chr7_3:73341700-73341719 None:intergenic 55.0%
! GGTTGTTTCCCTTGGTGGGA+AGG + chr7_3:73343612-73343631 Msa1122820:CDS 55.0%
TTTCCCTTGGTGGGAAGGTG+AGG + chr7_3:73343617-73343636 Msa1122820:intron 55.0%
AGACCTCACCTTCCCACCAA+GGG - chr7_3:73343623-73343642 None:intergenic 55.0%
TAGACCTCACCTTCCCACCA+AGG - chr7_3:73343624-73343643 None:intergenic 55.0%
!!! GGACGTTTTGGGGGAAAGGA+TGG + chr7_3:73343934-73343953 Msa1122820:CDS 55.0%
!!! CGTTTTGGGGGAAAGGATGG+TGG + chr7_3:73343937-73343956 Msa1122820:CDS 55.0%
CCCACAAGAGGTCATGACAC+TGG + chr7_3:73344075-73344094 Msa1122820:CDS 55.0%
CAGTTTAGGGGGGCTGTGTG+TGG + chr7_3:73339632-73339651 Msa1122820:intron 60.0%
GGGAGAGAGGATTGGGGATG+AGG - chr7_3:73340372-73340391 None:intergenic 60.0%
AGGCTACAGGTGAGGGAGAG+AGG - chr7_3:73340385-73340404 None:intergenic 60.0%
GTGTGCATGCTGCGGCCAAT+AGG + chr7_3:73340962-73340981 Msa1122820:intron 60.0%
GCTGCGGCCAATAGGCCTAT+AGG + chr7_3:73340970-73340989 Msa1122820:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73338594 73344379 73338594 ID=Msa1122820;Name=Msa1122820
chr7_3 mRNA 73338594 73344379 73338594 ID=Msa1122820-mRNA-1;Parent=Msa1122820;Name=Msa1122820-mRNA-1;_AED=0.18;_eAED=0.18;_QI=118|1|1|1|0.75|0.6|5|194|179
chr7_3 exon 73338594 73338706 73338594 ID=Msa1122820-mRNA-1:exon:19199;Parent=Msa1122820-mRNA-1
chr7_3 exon 73343123 73343245 73343123 ID=Msa1122820-mRNA-1:exon:19200;Parent=Msa1122820-mRNA-1
chr7_3 exon 73343563 73343633 73343563 ID=Msa1122820-mRNA-1:exon:19201;Parent=Msa1122820-mRNA-1
chr7_3 exon 73343745 73343831 73343745 ID=Msa1122820-mRNA-1:exon:19202;Parent=Msa1122820-mRNA-1
chr7_3 exon 73343922 73344379 73343922 ID=Msa1122820-mRNA-1:exon:19203;Parent=Msa1122820-mRNA-1
chr7_3 five_prime_UTR 73338594 73338706 73338594 ID=Msa1122820-mRNA-1:five_prime_utr;Parent=Msa1122820-mRNA-1
chr7_3 five_prime_UTR 73343123 73343127 73343123 ID=Msa1122820-mRNA-1:five_prime_utr;Parent=Msa1122820-mRNA-1
chr7_3 CDS 73343128 73343245 73343128 ID=Msa1122820-mRNA-1:cds;Parent=Msa1122820-mRNA-1
chr7_3 CDS 73343563 73343633 73343563 ID=Msa1122820-mRNA-1:cds;Parent=Msa1122820-mRNA-1
chr7_3 CDS 73343745 73343831 73343745 ID=Msa1122820-mRNA-1:cds;Parent=Msa1122820-mRNA-1
chr7_3 CDS 73343922 73344185 73343922 ID=Msa1122820-mRNA-1:cds;Parent=Msa1122820-mRNA-1
chr7_3 three_prime_UTR 73344186 73344379 73344186 ID=Msa1122820-mRNA-1:three_prime_utr;Parent=Msa1122820-mRNA-1
Gene Sequence

>Msa1122820

ATGGGAAAGATGTACAAGAAGAAACAAGCTCACGGACGTGGACCTCCAAGAGAACATAACAATAAGCAGGAAAATGAAATGGACATCAGGAAGATTATGGAAGACGTCCAAAACTTCAGCAACTCGCATATGACATGGAAAGAGCGCAAAAAGGTTGAAGATAGGAAGGTTGTTTCCCTTGGTGGGAAGCCCCTCAAGAATCAAAGATTACCTTTAAGTGTGGCACGACCAATGATGAAGAAACAAAAACAGAGGGAGGAAAAAATGCTCCAAGAGCGTATGATTCTAGGACGTTTTGGGGGAAAGGATGGTGGTAGCAGCAGTAAAAAACCAGCTGGAAAACACAAACCAGAGGACAGAGGTTTGAAGTTAAGTGAAGGTCGATTTAAAAATGGCATACTCGACGTGAAGCATTTGTTGAAGTCAACACCCACAAGAGGTCATGACACTGGAAAAAATATGTCAAATACAGGAAAAAGAAAAGGAGGCAACTGGAAACATGATAAAAAGGGTGGTGGTAAGAAGGATCAAATGTTTTAG

Protein sequence

>Msa1122820

MGKMYKKKQAHGRGPPREHNNKQENEMDIRKIMEDVQNFSNSHMTWKERKKVEDRKVVSLGGKPLKNQRLPLSVARPMMKKQKQREEKMLQERMILGRFGGKDGGSSSKKPAGKHKPEDRGLKLSEGRFKNGILDVKHLLKSTPTRGHDTGKNMSNTGKRKGGNWKHDKKGGGKKDQMF*