AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030870 MtrunA17_Chr7g0252111 97.917 144 3 0 1 144 1 144 1.63e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030870 AT3G26740.1 48.611 144 65 4 1 141 1 138 7.00e-33 113

Find 62 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTTGGTGTTGTTAA+AGG 0.238854 7_1:+65116099 None:intergenic
GGTGTATCATTCCTTGCTTC+AGG 0.283991 7_1:+65115375 None:intergenic
TCAGGCTGCAGCTTGACTTC+AGG 0.292025 7_1:+65115393 None:intergenic
CAAGCCTCCGCGCCTATATA+AGG 0.302081 7_1:+65114698 None:intergenic
AGAACGTGAGGCAATCAATT+TGG 0.330098 7_1:+65116044 None:intergenic
TTCCCTGAAGCTGCAGTCTT+TGG 0.331736 7_1:+65115354 None:intergenic
ACACCAAAGACTGCAGCTTC+AGG 0.337411 7_1:-65115357 Msa1030870:CDS
GGTTGGAGGGGATGCTTGTT+TGG 0.357304 7_1:-65115427 Msa1030870:CDS
ATAGCGAAATCTTACGTCTT+AGG 0.366730 7_1:+65115300 None:intergenic
TTCTCATGGTGCGGCCGAGC+TGG 0.391083 7_1:-65114854 Msa1030870:three_prime_UTR
ATATTAAGAAGGGAATATAA+TGG 0.392582 7_1:-65114931 Msa1030870:three_prime_UTR
GCAAGATGTGAGACACTCTT+TGG 0.410991 7_1:+65116087 None:intergenic
CTGCGAGCCTGATTATCAAA+AGG 0.412863 7_1:-65115140 Msa1030870:CDS
TATTAAGAAGGGAATATAAT+GGG 0.431529 7_1:-65114930 Msa1030870:three_prime_UTR
ATGAGGAATCACCCTTATAT+AGG 0.441104 7_1:-65114710 Msa1030870:three_prime_UTR
CAAAGAAACTTATATTAAGA+AGG 0.445828 7_1:-65114942 Msa1030870:three_prime_UTR
ACCGTTTCACATGCCTCAGC+TGG 0.450987 7_1:+65115447 None:intergenic
TGGAGTGCTAACGCACTTGT+AGG 0.459639 7_1:+65114805 None:intergenic
GCAGAGGCTTGTGATGATCT+TGG 0.462484 7_1:-65115172 Msa1030870:CDS
CACCAAAGACTGCAGCTTCA+GGG 0.489453 7_1:-65115356 Msa1030870:CDS
TGCGAGCCTGATTATCAAAA+GGG 0.500804 7_1:-65115139 Msa1030870:CDS
GATCATCACAAGCCTCTGCT+TGG 0.508891 7_1:+65115176 None:intergenic
AAGCCTCCGCGCCTATATAA+GGG 0.517834 7_1:+65114699 None:intergenic
TCACATTCTGACTTGAGCGT+TGG 0.521901 7_1:+65114785 None:intergenic
TGTTGAAGGATCAGAGTTGT+CGG 0.523519 7_1:+65115987 None:intergenic
TGTTAAAGGCACAAAGGTAG+TGG 0.526517 7_1:+65116113 None:intergenic
CAATAGCCAAGGCAATAAGA+AGG 0.530752 7_1:+65115092 None:intergenic
CAGCTTCAGGGAACATTGAG+AGG 0.539207 7_1:-65115344 Msa1030870:CDS
CGTGAGGCAATCAATTTGGT+AGG 0.539328 7_1:+65116048 None:intergenic
TCCAGCTGAGGCATGTGAAA+CGG 0.549406 7_1:-65115448 Msa1030870:CDS
CGAGCTGGTGATTCCACGGT+GGG 0.552818 7_1:-65114839 Msa1030870:three_prime_UTR
AAAGAAACTTATATTAAGAA+GGG 0.557838 7_1:-65114941 Msa1030870:three_prime_UTR
GAATTGTAATCAACTGTTGA+AGG 0.559497 7_1:+65115973 None:intergenic
AGGCATGTGAAACGGTTGGA+GGG 0.565003 7_1:-65115440 Msa1030870:CDS
AAAAGCACAGGCAATACAGA+TGG 0.572223 7_1:-65114878 Msa1030870:three_prime_UTR
GCTGAGGCATGTGAAACGGT+TGG 0.574341 7_1:-65115444 Msa1030870:CDS
CGGCCGAGCTGGTGATTCCA+CGG 0.575516 7_1:-65114843 Msa1030870:three_prime_UTR
TGTCAGAGTGTTTCCAGCTG+AGG 0.580476 7_1:-65115460 Msa1030870:intron
CACAAAGGTAGTGGTTGCAA+AGG 0.582454 7_1:+65116122 None:intergenic
GAGGCATGTGAAACGGTTGG+AGG 0.591598 7_1:-65115441 Msa1030870:CDS
TCAAGCTGCAGCCTGAAGCA+AGG 0.602199 7_1:-65115386 Msa1030870:CDS
GAGGCTTGTGATGATCTTGG+AGG 0.607345 7_1:-65115169 Msa1030870:CDS
GGCATGTGAAACGGTTGGAG+GGG 0.610004 7_1:-65115439 Msa1030870:CDS
GTTGTAAGCTTCAATAGCCA+AGG 0.612595 7_1:+65115081 None:intergenic
ATCGTACCTCGAGGGTGATG+AGG 0.621997 7_1:-65114727 Msa1030870:three_prime_UTR
AATTATAAGAACAAAAGCAC+AGG 0.624477 7_1:-65114890 Msa1030870:three_prime_UTR
ACAGATGGATTCTCATGGTG+CGG 0.627027 7_1:-65114863 Msa1030870:three_prime_UTR
GAAAGTGAATCGTACCTCGA+GGG 0.634551 7_1:-65114735 Msa1030870:three_prime_UTR
GTGAGGCAATCAATTTGGTA+GGG 0.637953 7_1:+65116049 None:intergenic
GCAATACAGATGGATTCTCA+TGG 0.647002 7_1:-65114868 Msa1030870:three_prime_UTR
TGGTGTTGTTAAAGGCACAA+AGG 0.647032 7_1:+65116107 None:intergenic
AGCTTCAGGGAACATTGAGA+GGG 0.650830 7_1:-65115343 Msa1030870:CDS
CCACCGTGGAATCACCAGCT+CGG 0.654741 7_1:+65114840 None:intergenic
GAATCACCCTTATATAGGCG+CGG 0.658584 7_1:-65114705 Msa1030870:three_prime_UTR
GCGAGGTGAAGAAGAACGTG+AGG 0.676435 7_1:+65116032 None:intergenic
TGAAAGTGAATCGTACCTCG+AGG 0.680621 7_1:-65114736 Msa1030870:three_prime_UTR
ACGTGGTTAAGCATAATGCA+AGG 0.686256 7_1:-65114759 Msa1030870:three_prime_UTR
ACTTTGATTGCAGTGTAGCG+AGG 0.698323 7_1:+65116015 None:intergenic
CCGAGCTGGTGATTCCACGG+TGG 0.699711 7_1:-65114840 Msa1030870:three_prime_UTR
GTGATTCCTCATCACCCTCG+AGG 0.702861 7_1:+65114721 None:intergenic
TCACCCTTATATAGGCGCGG+AGG 0.714858 7_1:-65114702 Msa1030870:three_prime_UTR
AAGTCAGAATGTGAATGACG+TGG 0.725692 7_1:-65114776 Msa1030870:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATATTTATAACCTT+AGG - chr7_1:65115033-65115052 Msa1030870:three_prime_UTR 10.0%
!! TATATTATATTTATAACCTT+AGG - chr7_1:65115033-65115052 Msa1030870:three_prime_UTR 10.0%
!! AACTAAACTAAAATGAATTA+AGG + chr7_1:65114971-65114990 None:intergenic 15.0%
!!! AATTCATTTTAGTTTAGTTT+AGG - chr7_1:65114972-65114991 Msa1030870:three_prime_UTR 15.0%
!!! TAGTATATTATTAGTTTCTA+TGG - chr7_1:65115103-65115122 Msa1030870:three_prime_UTR 15.0%
!! AAAGAAACTTATATTAAGAA+GGG - chr7_1:65115947-65115966 Msa1030870:intron 15.0%
!! AACTAAACTAAAATGAATTA+AGG + chr7_1:65114971-65114990 None:intergenic 15.0%
!!! AATTCATTTTAGTTTAGTTT+AGG - chr7_1:65114972-65114991 Msa1030870:three_prime_UTR 15.0%
!!! TAGTATATTATTAGTTTCTA+TGG - chr7_1:65115103-65115122 Msa1030870:three_prime_UTR 15.0%
!! AAAGAAACTTATATTAAGAA+GGG - chr7_1:65115947-65115966 Msa1030870:intron 15.0%
!!! TGAAGTAAAACATTTTTGAA+GGG + chr7_1:65114702-65114721 None:intergenic 20.0%
!!! TTGAAGTAAAACATTTTTGA+AGG + chr7_1:65114703-65114722 None:intergenic 20.0%
!!! TATTATTAGTTTCTATGGTA+TGG - chr7_1:65115108-65115127 Msa1030870:three_prime_UTR 20.0%
!!! ATCTCTATAAGTTATTCTTT+TGG - chr7_1:65115321-65115340 Msa1030870:CDS 20.0%
!! AATAACACAAACAAATGTTA+TGG + chr7_1:65115402-65115421 None:intergenic 20.0%
!! CAAAGAAACTTATATTAAGA+AGG - chr7_1:65115946-65115965 Msa1030870:intron 20.0%
!! ATATTAAGAAGGGAATATAA+TGG - chr7_1:65115957-65115976 Msa1030870:intron 20.0%
!! TATTAAGAAGGGAATATAAT+GGG - chr7_1:65115958-65115977 Msa1030870:intron 20.0%
!!! TGAAGTAAAACATTTTTGAA+GGG + chr7_1:65114702-65114721 None:intergenic 20.0%
!!! TTGAAGTAAAACATTTTTGA+AGG + chr7_1:65114703-65114722 None:intergenic 20.0%
!!! TATTATTAGTTTCTATGGTA+TGG - chr7_1:65115108-65115127 Msa1030870:three_prime_UTR 20.0%
!!! ATCTCTATAAGTTATTCTTT+TGG - chr7_1:65115321-65115340 Msa1030870:CDS 20.0%
!! AATAACACAAACAAATGTTA+TGG + chr7_1:65115402-65115421 None:intergenic 20.0%
!! CAAAGAAACTTATATTAAGA+AGG - chr7_1:65115946-65115965 Msa1030870:intron 20.0%
!! ATATTAAGAAGGGAATATAA+TGG - chr7_1:65115957-65115976 Msa1030870:intron 20.0%
!! TATTAAGAAGGGAATATAAT+GGG - chr7_1:65115958-65115977 Msa1030870:intron 20.0%
!!! AGTTTAGTTTAGGTTTTCTT+AGG - chr7_1:65114982-65115001 Msa1030870:three_prime_UTR 25.0%
!!! GACTTTTAGAATTTTGTTTC+AGG - chr7_1:65115343-65115362 Msa1030870:CDS 25.0%
!! TTTGTTTCAGGACTAAATTT+TGG - chr7_1:65115355-65115374 Msa1030870:CDS 25.0%
! ATCAGAATTGTGATGTTAAA+TGG - chr7_1:65115666-65115685 Msa1030870:intron 25.0%
!! GTGCTTTTGTTCTTATAATT+GGG + chr7_1:65115998-65116017 None:intergenic 25.0%
!! TGTGCTTTTGTTCTTATAAT+TGG + chr7_1:65115999-65116018 None:intergenic 25.0%
!! AATTATAAGAACAAAAGCAC+AGG - chr7_1:65115998-65116017 Msa1030870:CDS 25.0%
!!! AGTTTAGTTTAGGTTTTCTT+AGG - chr7_1:65114982-65115001 Msa1030870:three_prime_UTR 25.0%
!!! GACTTTTAGAATTTTGTTTC+AGG - chr7_1:65115343-65115362 Msa1030870:CDS 25.0%
!! TTTGTTTCAGGACTAAATTT+TGG - chr7_1:65115355-65115374 Msa1030870:CDS 25.0%
! ATCAGAATTGTGATGTTAAA+TGG - chr7_1:65115666-65115685 Msa1030870:intron 25.0%
!! GTGCTTTTGTTCTTATAATT+GGG + chr7_1:65115998-65116017 None:intergenic 25.0%
!! TGTGCTTTTGTTCTTATAAT+TGG + chr7_1:65115999-65116018 None:intergenic 25.0%
!! AATTATAAGAACAAAAGCAC+AGG - chr7_1:65115998-65116017 Msa1030870:CDS 25.0%
GAATTGTAATCAACTGTTGA+AGG + chr7_1:65114918-65114937 None:intergenic 30.0%
ATTAAGGTGATAGAGAATGA+AGG + chr7_1:65114955-65114974 None:intergenic 30.0%
AGATCGTGCTCATTATTTAT+AGG - chr7_1:65115062-65115081 Msa1030870:three_prime_UTR 30.0%
GATTACCATTTGTCACAAAT+AGG + chr7_1:65115179-65115198 None:intergenic 30.0%
!!! AATGGATGATGTGTTTTTTC+AGG - chr7_1:65115684-65115703 Msa1030870:intron 30.0%
!!! ATGGATGATGTGTTTTTTCA+GGG - chr7_1:65115685-65115704 Msa1030870:intron 30.0%
GAATTGTAATCAACTGTTGA+AGG + chr7_1:65114918-65114937 None:intergenic 30.0%
ATTAAGGTGATAGAGAATGA+AGG + chr7_1:65114955-65114974 None:intergenic 30.0%
AGATCGTGCTCATTATTTAT+AGG - chr7_1:65115062-65115081 Msa1030870:three_prime_UTR 30.0%
GATTACCATTTGTCACAAAT+AGG + chr7_1:65115179-65115198 None:intergenic 30.0%
!!! AATGGATGATGTGTTTTTTC+AGG - chr7_1:65115684-65115703 Msa1030870:intron 30.0%
!!! ATGGATGATGTGTTTTTTCA+GGG - chr7_1:65115685-65115704 Msa1030870:intron 30.0%
!! ACACTCTTTGGTGTTGTTAA+AGG + chr7_1:65114792-65114811 None:intergenic 35.0%
GCATACCTATTTGTGACAAA+TGG - chr7_1:65115171-65115190 Msa1030870:CDS 35.0%
!! AATTTTGGAGAGTCACAACA+TGG - chr7_1:65115370-65115389 Msa1030870:CDS 35.0%
ATAGCGAAATCTTACGTCTT+AGG + chr7_1:65115591-65115610 None:intergenic 35.0%
!! TAGACACCCTTTTGATAATC+AGG + chr7_1:65115758-65115777 None:intergenic 35.0%
GAAAAACCTTCTTATTGCCT+TGG - chr7_1:65115790-65115809 Msa1030870:intron 35.0%
ATGAGGAATCACCCTTATAT+AGG - chr7_1:65116178-65116197 Msa1030870:five_prime_UTR 35.0%
!! ACACTCTTTGGTGTTGTTAA+AGG + chr7_1:65114792-65114811 None:intergenic 35.0%
GCATACCTATTTGTGACAAA+TGG - chr7_1:65115171-65115190 Msa1030870:CDS 35.0%
!! AATTTTGGAGAGTCACAACA+TGG - chr7_1:65115370-65115389 Msa1030870:CDS 35.0%
ATAGCGAAATCTTACGTCTT+AGG + chr7_1:65115591-65115610 None:intergenic 35.0%
!! TAGACACCCTTTTGATAATC+AGG + chr7_1:65115758-65115777 None:intergenic 35.0%
GAAAAACCTTCTTATTGCCT+TGG - chr7_1:65115790-65115809 Msa1030870:intron 35.0%
ATGAGGAATCACCCTTATAT+AGG - chr7_1:65116178-65116197 Msa1030870:five_prime_UTR 35.0%
! GAGCTGTCTGCATTTTTGAA+GGG + chr7_1:65114743-65114762 None:intergenic 40.0%
! AGAGCTGTCTGCATTTTTGA+AGG + chr7_1:65114744-65114763 None:intergenic 40.0%
! TGTTAAAGGCACAAAGGTAG+TGG + chr7_1:65114778-65114797 None:intergenic 40.0%
!! TGGTGTTGTTAAAGGCACAA+AGG + chr7_1:65114784-65114803 None:intergenic 40.0%
GTGAGGCAATCAATTTGGTA+GGG + chr7_1:65114842-65114861 None:intergenic 40.0%
AGAACGTGAGGCAATCAATT+TGG + chr7_1:65114847-65114866 None:intergenic 40.0%
TGTTGAAGGATCAGAGTTGT+CGG + chr7_1:65114904-65114923 None:intergenic 40.0%
TGCGAGCCTGATTATCAAAA+GGG - chr7_1:65115749-65115768 Msa1030870:intron 40.0%
CAATAGCCAAGGCAATAAGA+AGG + chr7_1:65115799-65115818 None:intergenic 40.0%
GTTGTAAGCTTCAATAGCCA+AGG + chr7_1:65115810-65115829 None:intergenic 40.0%
! AAAAGCACAGGCAATACAGA+TGG - chr7_1:65116010-65116029 Msa1030870:CDS 40.0%
! GCAATACAGATGGATTCTCA+TGG - chr7_1:65116020-65116039 Msa1030870:CDS 40.0%
AAGTCAGAATGTGAATGACG+TGG - chr7_1:65116112-65116131 Msa1030870:CDS 40.0%
ACGTGGTTAAGCATAATGCA+AGG - chr7_1:65116129-65116148 Msa1030870:CDS 40.0%
! GAGCTGTCTGCATTTTTGAA+GGG + chr7_1:65114743-65114762 None:intergenic 40.0%
! AGAGCTGTCTGCATTTTTGA+AGG + chr7_1:65114744-65114763 None:intergenic 40.0%
! TGTTAAAGGCACAAAGGTAG+TGG + chr7_1:65114778-65114797 None:intergenic 40.0%
!! TGGTGTTGTTAAAGGCACAA+AGG + chr7_1:65114784-65114803 None:intergenic 40.0%
GTGAGGCAATCAATTTGGTA+GGG + chr7_1:65114842-65114861 None:intergenic 40.0%
AGAACGTGAGGCAATCAATT+TGG + chr7_1:65114847-65114866 None:intergenic 40.0%
TGTTGAAGGATCAGAGTTGT+CGG + chr7_1:65114904-65114923 None:intergenic 40.0%
TGCGAGCCTGATTATCAAAA+GGG - chr7_1:65115749-65115768 Msa1030870:intron 40.0%
CAATAGCCAAGGCAATAAGA+AGG + chr7_1:65115799-65115818 None:intergenic 40.0%
GTTGTAAGCTTCAATAGCCA+AGG + chr7_1:65115810-65115829 None:intergenic 40.0%
! AAAAGCACAGGCAATACAGA+TGG - chr7_1:65116010-65116029 Msa1030870:CDS 40.0%
! GCAATACAGATGGATTCTCA+TGG - chr7_1:65116020-65116039 Msa1030870:CDS 40.0%
AAGTCAGAATGTGAATGACG+TGG - chr7_1:65116112-65116131 Msa1030870:CDS 40.0%
ACGTGGTTAAGCATAATGCA+AGG - chr7_1:65116129-65116148 Msa1030870:CDS 40.0%
! CACAAAGGTAGTGGTTGCAA+AGG + chr7_1:65114769-65114788 None:intergenic 45.0%
GCAAGATGTGAGACACTCTT+TGG + chr7_1:65114804-65114823 None:intergenic 45.0%
CGTGAGGCAATCAATTTGGT+AGG + chr7_1:65114843-65114862 None:intergenic 45.0%
ACTTTGATTGCAGTGTAGCG+AGG + chr7_1:65114876-65114895 None:intergenic 45.0%
AGCACGATCTGTACTTCCTA+AGG + chr7_1:65115052-65115071 None:intergenic 45.0%
GGTGTATCATTCCTTGCTTC+AGG + chr7_1:65115516-65115535 None:intergenic 45.0%
AGCTTCAGGGAACATTGAGA+GGG - chr7_1:65115545-65115564 Msa1030870:intron 45.0%
! TTTCAGGGTTTTCCAAGCAG+AGG - chr7_1:65115700-65115719 Msa1030870:intron 45.0%
CTGCGAGCCTGATTATCAAA+AGG - chr7_1:65115748-65115767 Msa1030870:intron 45.0%
! ACAGATGGATTCTCATGGTG+CGG - chr7_1:65116025-65116044 Msa1030870:CDS 45.0%
! TCACATTCTGACTTGAGCGT+TGG + chr7_1:65116106-65116125 None:intergenic 45.0%
TGAAAGTGAATCGTACCTCG+AGG - chr7_1:65116152-65116171 Msa1030870:exon 45.0%
GAAAGTGAATCGTACCTCGA+GGG - chr7_1:65116153-65116172 Msa1030870:exon 45.0%
GAATCACCCTTATATAGGCG+CGG - chr7_1:65116183-65116202 Msa1030870:five_prime_UTR 45.0%
! CACAAAGGTAGTGGTTGCAA+AGG + chr7_1:65114769-65114788 None:intergenic 45.0%
GCAAGATGTGAGACACTCTT+TGG + chr7_1:65114804-65114823 None:intergenic 45.0%
CGTGAGGCAATCAATTTGGT+AGG + chr7_1:65114843-65114862 None:intergenic 45.0%
ACTTTGATTGCAGTGTAGCG+AGG + chr7_1:65114876-65114895 None:intergenic 45.0%
AGCACGATCTGTACTTCCTA+AGG + chr7_1:65115052-65115071 None:intergenic 45.0%
GGTGTATCATTCCTTGCTTC+AGG + chr7_1:65115516-65115535 None:intergenic 45.0%
AGCTTCAGGGAACATTGAGA+GGG - chr7_1:65115545-65115564 Msa1030870:intron 45.0%
! TTTCAGGGTTTTCCAAGCAG+AGG - chr7_1:65115700-65115719 Msa1030870:intron 45.0%
CTGCGAGCCTGATTATCAAA+AGG - chr7_1:65115748-65115767 Msa1030870:intron 45.0%
! ACAGATGGATTCTCATGGTG+CGG - chr7_1:65116025-65116044 Msa1030870:CDS 45.0%
! TCACATTCTGACTTGAGCGT+TGG + chr7_1:65116106-65116125 None:intergenic 45.0%
TGAAAGTGAATCGTACCTCG+AGG - chr7_1:65116152-65116171 Msa1030870:exon 45.0%
GAAAGTGAATCGTACCTCGA+GGG - chr7_1:65116153-65116172 Msa1030870:exon 45.0%
GAATCACCCTTATATAGGCG+CGG - chr7_1:65116183-65116202 Msa1030870:five_prime_UTR 45.0%
! TGTCAGAGTGTTTCCAGCTG+AGG - chr7_1:65115428-65115447 Msa1030870:CDS 50.0%
TCCAGCTGAGGCATGTGAAA+CGG - chr7_1:65115440-65115459 Msa1030870:CDS 50.0%
AGGCATGTGAAACGGTTGGA+GGG - chr7_1:65115448-65115467 Msa1030870:CDS 50.0%
ACACCAAAGACTGCAGCTTC+AGG - chr7_1:65115531-65115550 Msa1030870:intron 50.0%
CACCAAAGACTGCAGCTTCA+GGG - chr7_1:65115532-65115551 Msa1030870:intron 50.0%
TTCCCTGAAGCTGCAGTCTT+TGG + chr7_1:65115537-65115556 None:intergenic 50.0%
CAGCTTCAGGGAACATTGAG+AGG - chr7_1:65115544-65115563 Msa1030870:intron 50.0%
GATCATCACAAGCCTCTGCT+TGG + chr7_1:65115715-65115734 None:intergenic 50.0%
GCAGAGGCTTGTGATGATCT+TGG - chr7_1:65115716-65115735 Msa1030870:intron 50.0%
GAGGCTTGTGATGATCTTGG+AGG - chr7_1:65115719-65115738 Msa1030870:intron 50.0%
! TGGAGTGCTAACGCACTTGT+AGG + chr7_1:65116086-65116105 None:intergenic 50.0%
AAGCCTCCGCGCCTATATAA+GGG + chr7_1:65116192-65116211 None:intergenic 50.0%
! TGTCAGAGTGTTTCCAGCTG+AGG - chr7_1:65115428-65115447 Msa1030870:CDS 50.0%
TCCAGCTGAGGCATGTGAAA+CGG - chr7_1:65115440-65115459 Msa1030870:CDS 50.0%
AGGCATGTGAAACGGTTGGA+GGG - chr7_1:65115448-65115467 Msa1030870:CDS 50.0%
ACACCAAAGACTGCAGCTTC+AGG - chr7_1:65115531-65115550 Msa1030870:intron 50.0%
CACCAAAGACTGCAGCTTCA+GGG - chr7_1:65115532-65115551 Msa1030870:intron 50.0%
TTCCCTGAAGCTGCAGTCTT+TGG + chr7_1:65115537-65115556 None:intergenic 50.0%
CAGCTTCAGGGAACATTGAG+AGG - chr7_1:65115544-65115563 Msa1030870:intron 50.0%
GATCATCACAAGCCTCTGCT+TGG + chr7_1:65115715-65115734 None:intergenic 50.0%
GCAGAGGCTTGTGATGATCT+TGG - chr7_1:65115716-65115735 Msa1030870:intron 50.0%
GAGGCTTGTGATGATCTTGG+AGG - chr7_1:65115719-65115738 Msa1030870:intron 50.0%
! TGGAGTGCTAACGCACTTGT+AGG + chr7_1:65116086-65116105 None:intergenic 50.0%
AAGCCTCCGCGCCTATATAA+GGG + chr7_1:65116192-65116211 None:intergenic 50.0%
GCGAGGTGAAGAAGAACGTG+AGG + chr7_1:65114859-65114878 None:intergenic 55.0%
ACCGTTTCACATGCCTCAGC+TGG + chr7_1:65115444-65115463 None:intergenic 55.0%
GCTGAGGCATGTGAAACGGT+TGG - chr7_1:65115444-65115463 Msa1030870:CDS 55.0%
GAGGCATGTGAAACGGTTGG+AGG - chr7_1:65115447-65115466 Msa1030870:CDS 55.0%
GGCATGTGAAACGGTTGGAG+GGG - chr7_1:65115449-65115468 Msa1030870:CDS 55.0%
GGTTGGAGGGGATGCTTGTT+TGG - chr7_1:65115461-65115480 Msa1030870:intron 55.0%
TCAGGCTGCAGCTTGACTTC+AGG + chr7_1:65115498-65115517 None:intergenic 55.0%
TCAAGCTGCAGCCTGAAGCA+AGG - chr7_1:65115502-65115521 Msa1030870:intron 55.0%
! GGTACTTTTCACTCCCACCG+TGG + chr7_1:65116065-65116084 None:intergenic 55.0%
ATCGTACCTCGAGGGTGATG+AGG - chr7_1:65116161-65116180 Msa1030870:five_prime_UTR 55.0%
GTGATTCCTCATCACCCTCG+AGG + chr7_1:65116170-65116189 None:intergenic 55.0%
TCACCCTTATATAGGCGCGG+AGG - chr7_1:65116186-65116205 Msa1030870:five_prime_UTR 55.0%
CAAGCCTCCGCGCCTATATA+AGG + chr7_1:65116193-65116212 None:intergenic 55.0%
GCGAGGTGAAGAAGAACGTG+AGG + chr7_1:65114859-65114878 None:intergenic 55.0%
ACCGTTTCACATGCCTCAGC+TGG + chr7_1:65115444-65115463 None:intergenic 55.0%
GCTGAGGCATGTGAAACGGT+TGG - chr7_1:65115444-65115463 Msa1030870:CDS 55.0%
GAGGCATGTGAAACGGTTGG+AGG - chr7_1:65115447-65115466 Msa1030870:CDS 55.0%
GGCATGTGAAACGGTTGGAG+GGG - chr7_1:65115449-65115468 Msa1030870:CDS 55.0%
GGTTGGAGGGGATGCTTGTT+TGG - chr7_1:65115461-65115480 Msa1030870:intron 55.0%
TCAGGCTGCAGCTTGACTTC+AGG + chr7_1:65115498-65115517 None:intergenic 55.0%
TCAAGCTGCAGCCTGAAGCA+AGG - chr7_1:65115502-65115521 Msa1030870:intron 55.0%
! GGTACTTTTCACTCCCACCG+TGG + chr7_1:65116065-65116084 None:intergenic 55.0%
ATCGTACCTCGAGGGTGATG+AGG - chr7_1:65116161-65116180 Msa1030870:five_prime_UTR 55.0%
GTGATTCCTCATCACCCTCG+AGG + chr7_1:65116170-65116189 None:intergenic 55.0%
TCACCCTTATATAGGCGCGG+AGG - chr7_1:65116186-65116205 Msa1030870:five_prime_UTR 55.0%
CAAGCCTCCGCGCCTATATA+AGG + chr7_1:65116193-65116212 None:intergenic 55.0%
CCACCGTGGAATCACCAGCT+CGG + chr7_1:65116051-65116070 None:intergenic 60.0%
CGAGCTGGTGATTCCACGGT+GGG - chr7_1:65116049-65116068 Msa1030870:CDS 60.0%
CCACCGTGGAATCACCAGCT+CGG + chr7_1:65116051-65116070 None:intergenic 60.0%
CGAGCTGGTGATTCCACGGT+GGG - chr7_1:65116049-65116068 Msa1030870:CDS 60.0%
TTCTCATGGTGCGGCCGAGC+TGG - chr7_1:65116034-65116053 Msa1030870:CDS 65.0%
CGGCCGAGCTGGTGATTCCA+CGG - chr7_1:65116045-65116064 Msa1030870:CDS 65.0%
CCGAGCTGGTGATTCCACGG+TGG - chr7_1:65116048-65116067 Msa1030870:CDS 65.0%
TTCTCATGGTGCGGCCGAGC+TGG - chr7_1:65116034-65116053 Msa1030870:CDS 65.0%
CGGCCGAGCTGGTGATTCCA+CGG - chr7_1:65116045-65116064 Msa1030870:CDS 65.0%
CCGAGCTGGTGATTCCACGG+TGG - chr7_1:65116048-65116067 Msa1030870:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 65114691 65116219 65114691 ID=Msa1030870;Name=Msa1030870
chr7_1 mRNA 65114691 65116219 65114691 ID=Msa1030870-mRNA-1;Parent=Msa1030870;Name=Msa1030870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=59|1|1|1|1|1|3|438|144
chr7_1 exon 65114691 65115204 65114691 ID=Msa1030870-mRNA-1:exon:14393;Parent=Msa1030870-mRNA-1
chr7_1 exon 65115315 65115476 65115315 ID=Msa1030870-mRNA-1:exon:14392;Parent=Msa1030870-mRNA-1
chr7_1 exon 65115964 65116219 65115964 ID=Msa1030870-mRNA-1:exon:14391;Parent=Msa1030870-mRNA-1
chr7_1 five_prime_UTR 65116161 65116219 65116161 ID=Msa1030870-mRNA-1:five_prime_utr;Parent=Msa1030870-mRNA-1
chr7_1 CDS 65115964 65116160 65115964 ID=Msa1030870-mRNA-1:cds;Parent=Msa1030870-mRNA-1
chr7_1 CDS 65115315 65115476 65115315 ID=Msa1030870-mRNA-1:cds;Parent=Msa1030870-mRNA-1
chr7_1 CDS 65115129 65115204 65115129 ID=Msa1030870-mRNA-1:cds;Parent=Msa1030870-mRNA-1
chr7_1 three_prime_UTR 65114691 65115128 65114691 ID=Msa1030870-mRNA-1:three_prime_utr;Parent=Msa1030870-mRNA-1
Gene Sequence

>Msa1030870

ATGCAGACAGCTCTAACCTTTGCAACCACTACCTTTGTGCCTTTAACAACACCAAAGAGTGTCTCACATCTTGCTACTAATTTGAGTTTCCCTACCAAATTGATTGCCTCACGTTCTTCTTCACCTCGCTACACTGCAATCAAAGTTGCAACCGACAACTCTGATCCTTCAACAGTTGATTACAATTCTGCATTCTCAGTGTTTCCAGCTGAGGCATGTGAAACGGTTGGAGGGGATGCTTGTTTGGCAGACATGAATCCTGAAGTCAAGCTGCAGCCTGAAGCAAGGAATGATACACCAAAGACTGCAGCTTCAGGGAACATTGAGAGGGAGTATCTTGATTACAATGAGCCTAAGACGGTTTTCCAAGCAGAGGCTTGTGATGATCTTGGAGGAGCTTTCTGCGAGCCTGATTATCAAAAGGGTGTCTACTAG

Protein sequence

>Msa1030870

MQTALTFATTTFVPLTTPKSVSHLATNLSFPTKLIASRSSSPRYTAIKVATDNSDPSTVDYNSAFSVFPAEACETVGGDACLADMNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEPDYQKGVY*