AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0868180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868180 MtrunA17_Chr1g0147881 97.076 342 6 2 1 340 1 340 0.0 675
Msa0868180 MtrunA17_Chr4g0071521 50.000 348 99 11 1 319 1 302 6.30e-87 264
Msa0868180 MtrunA17_Chr4g0053281 39.899 396 124 13 1 340 1 338 2.18e-66 212
Msa0868180 MtrunA17_Chr3g0139021 63.415 164 52 5 167 328 222 379 7.14e-62 202
Msa0868180 MtrunA17_Chr5g0401821 58.394 137 50 2 205 340 141 271 1.10e-51 172
Msa0868180 MtrunA17_Chr5g0401821 43.119 109 42 5 1 90 1 108 5.85e-11 62.4
Msa0868180 MtrunA17_Chr1g0184691 53.631 179 73 3 142 319 181 350 9.95e-47 162
Msa0868180 MtrunA17_Chr7g0228941 65.823 79 27 0 241 319 31 109 5.89e-35 124
Msa0868180 MtrunA17_Chr2g0293481 57.955 88 32 2 237 319 237 324 5.53e-29 116
Msa0868180 MtrunA17_Chr7g0248691 62.195 82 26 2 238 319 135 211 1.33e-28 113
Msa0868180 MtrunA17_Chr2g0284321 54.762 84 37 1 239 321 11 94 7.76e-28 108
Msa0868180 MtrunA17_Chr8g0379461 52.809 89 35 1 238 319 45 133 5.29e-27 106
Msa0868180 MtrunA17_Chr2g0319961 55.556 90 34 2 238 321 50 139 1.44e-26 105
Msa0868180 MtrunA17_Chr7g0270051 51.136 88 38 1 237 319 23 110 3.89e-26 105
Msa0868180 MtrunA17_Chr8g0348311 58.537 82 29 1 238 319 136 212 9.11e-26 105
Msa0868180 MtrunA17_Chr4g0042831 50.505 99 37 3 237 324 242 339 5.08e-23 98.6
Msa0868180 MtrunA17_Chr4g0042831 50.877 57 27 1 263 319 146 201 8.59e-11 62.8
Msa0868180 MtrunA17_Chr5g0418191 57.317 82 31 2 246 324 301 381 8.74e-23 98.6
Msa0868180 MtrunA17_Chr5g0418191 34.320 169 90 7 159 321 55 208 1.74e-13 70.9
Msa0868180 MtrunA17_Chr2g0289181 53.165 79 34 1 256 334 8 83 4.79e-22 93.2
Msa0868180 MtrunA17_Chr3g0106491 40.690 145 74 4 189 323 283 425 4.90e-22 96.7
Msa0868180 MtrunA17_Chr3g0106491 50.000 68 32 2 263 330 199 264 1.56e-12 68.2
Msa0868180 MtrunA17_Chr5g0445311 52.381 84 36 2 244 324 343 425 5.34e-22 96.7
Msa0868180 MtrunA17_Chr1g0202461 50.000 80 39 1 241 319 239 318 7.01e-22 95.5
Msa0868180 MtrunA17_Chr3g0101131 46.667 105 46 4 238 334 383 485 2.79e-21 94.7
Msa0868180 MtrunA17_Chr4g0004911 38.168 131 65 4 194 321 277 394 5.71e-21 93.6
Msa0868180 MtrunA17_Chr4g0004911 50.877 57 27 1 263 319 185 240 5.57e-12 66.6
Msa0868180 MtrunA17_Chr7g0218081 53.012 83 35 2 245 324 390 471 5.85e-21 93.6
Msa0868180 MtrunA17_Chr7g0218081 47.059 85 39 4 254 334 219 301 8.52e-14 72.0
Msa0868180 MtrunA17_Chr5g0432161 56.098 82 32 2 246 324 402 482 6.08e-21 94.0
Msa0868180 MtrunA17_Chr5g0432161 54.386 57 24 2 263 319 245 299 6.27e-12 66.6
Msa0868180 MtrunA17_Chr4g0051881 44.706 85 46 1 249 333 165 248 1.00e-20 91.3
Msa0868180 MtrunA17_Chr7g0270191 44.318 88 48 1 232 319 115 201 1.16e-20 90.5
Msa0868180 MtrunA17_Chr3g0079691 52.439 82 38 1 243 324 476 556 1.63e-20 92.8
Msa0868180 MtrunA17_Chr3g0079691 54.386 57 24 2 263 319 281 335 1.81e-12 68.2
Msa0868180 MtrunA17_Chr7g0243891 40.288 139 64 5 189 324 313 435 3.25e-20 91.7
Msa0868180 MtrunA17_Chr7g0243891 54.386 57 24 2 263 319 217 271 5.69e-11 63.5
Msa0868180 MtrunA17_Chr8g0387501 61.404 57 22 0 263 319 130 186 3.37e-20 89.0
Msa0868180 MtrunA17_Chr7g0249301 49.398 83 38 2 245 324 272 353 4.85e-20 90.1
Msa0868180 MtrunA17_Chr7g0249301 54.386 57 24 2 263 319 63 117 3.11e-12 67.0
Msa0868180 MtrunA17_Chr7g0249311 48.421 95 46 2 243 335 373 466 6.15e-20 90.9
Msa0868180 MtrunA17_Chr7g0249311 50.000 68 29 3 252 319 172 234 4.18e-12 67.4
Msa0868180 MtrunA17_Chr2g0322391 47.561 82 43 0 246 327 333 414 6.33e-20 90.9
Msa0868180 MtrunA17_Chr7g0270831 39.860 143 60 7 186 321 152 275 1.49e-19 89.0
Msa0868180 MtrunA17_Chr7g0263531 51.471 68 32 1 254 321 353 419 1.73e-19 89.0
Msa0868180 MtrunA17_Chr7g0263531 47.619 84 41 3 254 336 180 261 4.24e-16 79.0
Msa0868180 MtrunA17_Chr2g0288871 48.649 74 38 0 246 319 289 362 3.10e-19 88.6
Msa0868180 MtrunA17_Chr7g0238921 38.261 115 64 4 207 319 71 180 9.64e-19 85.5
Msa0868180 MtrunA17_Chr5g0443131 45.679 81 43 1 249 329 144 223 9.67e-19 85.5
Msa0868180 MtrunA17_Chr4g0075201 48.649 74 38 0 246 319 251 324 1.37e-18 86.7
Msa0868180 MtrunA17_Chr3g0126391 40.441 136 54 8 207 334 84 200 1.88e-18 85.1
Msa0868180 MtrunA17_Chr3g0099641 43.421 76 43 0 246 321 235 310 1.98e-18 85.9
Msa0868180 MtrunA17_Chr1g0194481 43.529 85 45 2 237 319 131 214 2.11e-18 84.7
Msa0868180 MtrunA17_Chr3g0136961 48.611 72 37 0 248 319 124 195 2.35e-18 84.0
Msa0868180 MtrunA17_Chr4g0001361 53.846 65 30 0 255 319 155 219 2.45e-18 84.3
Msa0868180 MtrunA17_Chr1g0150801 50.704 71 34 1 249 319 89 158 2.83e-18 80.9
Msa0868180 MtrunA17_Chr4g0025061 53.731 67 31 0 263 329 361 427 3.03e-18 85.9
Msa0868180 MtrunA17_Chr2g0333851 44.048 84 43 1 236 319 147 226 4.09e-18 83.6
Msa0868180 MtrunA17_Chr4g0051181 39.796 98 40 1 241 319 203 300 5.04e-18 84.7
Msa0868180 MtrunA17_Chr7g0216891 46.988 83 36 2 243 323 204 280 5.81e-18 84.7
Msa0868180 MtrunA17_Chr1g0150281 52.632 57 27 0 263 319 141 197 6.35e-18 82.8
Msa0868180 MtrunA17_Chr2g0294231 42.045 88 50 1 245 332 186 272 1.09e-17 83.2
Msa0868180 MtrunA17_Chr3g0129361 45.783 83 41 2 248 327 127 208 1.10e-17 80.9
Msa0868180 MtrunA17_Chr8g0383351 48.052 77 35 2 248 320 142 217 1.23e-17 80.9
Msa0868180 MtrunA17_Chr5g0418781 43.902 82 45 1 238 319 100 180 1.69e-17 81.3
Msa0868180 MtrunA17_Chr8g0335811 45.783 83 41 2 241 320 130 211 1.91e-17 80.1
Msa0868180 MtrunA17_Chr7g0248721 31.056 161 94 5 181 326 45 203 2.28e-17 79.7
Msa0868180 MtrunA17_Chr4g0074001 57.895 57 23 1 263 319 360 415 3.44e-17 82.4
Msa0868180 MtrunA17_Chr8g0383251 43.182 88 44 2 239 321 80 166 3.56e-17 78.6
Msa0868180 MtrunA17_Chr4g0060271 52.542 59 28 0 263 321 256 314 8.65e-17 81.3
Msa0868180 MtrunA17_Chr7g0275531 43.529 85 44 2 237 317 91 175 1.20e-16 79.7
Msa0868180 MtrunA17_Chr7g0224801 49.231 65 32 1 258 322 89 152 1.84e-16 76.3
Msa0868180 MtrunA17_Chr2g0302391 52.542 59 28 0 263 321 212 270 2.58e-16 79.3
Msa0868180 MtrunA17_Chr4g0068541 44.595 74 40 1 246 319 192 264 2.84e-16 79.3
Msa0868180 MtrunA17_Chr3g0129321 45.000 80 43 1 240 319 96 174 3.21e-16 76.3
Msa0868180 MtrunA17_Chr5g0447701 49.296 71 35 1 249 319 239 308 3.52e-16 79.0
Msa0868180 MtrunA17_Chr4g0025051 50.746 67 33 0 263 329 336 402 4.03e-16 79.3
Msa0868180 MtrunA17_Chr1g0188941 44.578 83 45 1 243 325 32 113 8.98e-16 72.8
Msa0868180 MtrunA17_Chr1g0150271 46.774 62 33 0 260 321 99 160 2.54e-15 74.7
Msa0868180 MtrunA17_Chr5g0402931 60.345 58 20 2 262 319 123 177 3.39e-15 72.8
Msa0868180 MtrunA17_Chr8g0347251 41.573 89 49 2 235 320 108 196 6.21e-15 74.7
Msa0868180 MtrunA17_Chr6g0485431 49.254 67 32 2 263 328 155 220 8.86e-15 74.3
Msa0868180 MtrunA17_Chr1g0189391 58.065 62 24 2 259 319 94 154 1.22e-14 73.9
Msa0868180 MtrunA17_Chr8g0386241 39.706 68 40 1 259 326 100 166 1.17e-13 68.6
Msa0868180 MtrunA17_Chr8g0387981 36.538 104 52 4 225 317 89 189 1.34e-13 70.9
Msa0868180 MtrunA17_Chr5g0428351 42.857 84 39 3 236 317 164 240 2.20e-12 67.0
Msa0868180 MtrunA17_Chr4g0024391 42.169 83 46 1 245 327 214 294 4.96e-12 66.6
Msa0868180 MtrunA17_Chr2g0315361 35.294 102 64 1 218 317 104 205 1.22e-11 64.7
Msa0868180 MtrunA17_Chr3g0128671 40.244 82 39 2 238 317 111 184 1.96e-11 63.9
Msa0868180 MtrunA17_Chr7g0244981 36.842 95 56 3 226 317 86 179 3.57e-11 63.2
Msa0868180 MtrunA17_Chr2g0315381 38.667 75 44 1 245 317 127 201 7.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868180 AT4G31550.1 60.057 353 98 12 1 339 1 324 7.74e-126 364
Msa0868180 AT4G31550.2 60.057 353 97 13 1 339 1 323 7.49e-125 361
Msa0868180 AT2G24570.1 59.312 349 103 13 1 339 1 320 1.11e-116 340
Msa0868180 AT4G31550.3 56.463 294 87 12 1 282 1 265 8.19e-89 267
Msa0868180 AT2G23320.1 39.429 350 132 9 1 321 1 299 1.29e-63 205
Msa0868180 AT3G04670.1 37.830 341 160 11 11 320 1 320 2.30e-57 189
Msa0868180 AT4G24240.1 61.290 155 50 3 167 321 196 340 2.60e-57 189
Msa0868180 AT2G30590.1 54.913 173 65 5 151 319 207 370 1.73e-55 186
Msa0868180 AT5G28650.1 35.821 335 175 9 11 320 1 320 4.05e-52 175
Msa0868180 AT2G23320.2 34.405 311 124 9 1 282 1 260 2.01e-35 130
Msa0868180 AT3G04670.2 33.225 307 153 11 11 286 1 286 3.38e-32 122
Msa0868180 AT4G24240.2 55.172 116 42 3 167 282 196 301 4.28e-30 117
Msa0868180 AT2G34830.1 55.682 88 34 2 237 319 185 272 9.15e-29 115
Msa0868180 AT2G34830.2 55.682 88 34 2 237 319 194 281 9.55e-29 115
Msa0868180 AT1G29280.1 57.609 92 32 3 235 319 40 131 2.48e-28 111
Msa0868180 AT1G30650.1 54.545 88 35 2 237 319 187 274 2.59e-27 111
Msa0868180 AT4G01250.1 57.143 91 33 2 229 319 101 185 4.81e-26 105
Msa0868180 AT3G58710.2 55.682 88 33 2 238 319 40 127 1.05e-25 104
Msa0868180 AT3G58710.1 55.682 88 33 2 238 319 41 128 3.19e-25 103
Msa0868180 AT5G52830.1 54.878 82 33 1 238 319 145 222 1.40e-24 102
Msa0868180 AT2G38470.1 57.317 82 31 2 246 324 343 423 6.87e-23 99.8
Msa0868180 AT2G38470.1 54.386 57 24 2 263 319 185 239 8.20e-12 66.6
Msa0868180 AT5G45050.2 50.000 82 37 1 238 319 1132 1209 1.86e-21 96.3
Msa0868180 AT5G45050.1 50.000 82 37 1 238 319 1160 1237 1.92e-21 96.3
Msa0868180 AT5G45050.4 50.000 82 37 1 238 319 1021 1098 2.00e-21 96.3
Msa0868180 AT1G13960.2 55.696 79 31 2 246 321 237 314 3.41e-21 93.6
Msa0868180 AT1G13960.2 54.839 62 25 3 259 319 72 131 8.58e-14 72.0
Msa0868180 AT2G03340.1 49.495 99 37 3 238 324 379 476 3.45e-21 94.7
Msa0868180 AT2G03340.1 50.746 67 30 3 256 321 243 307 6.08e-14 73.2
Msa0868180 AT5G07100.2 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0868180 AT5G07100.2 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0868180 AT5G07100.4 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0868180 AT5G07100.4 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0868180 AT5G07100.5 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0868180 AT5G07100.5 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0868180 AT5G07100.3 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0868180 AT5G07100.3 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0868180 AT1G13960.1 55.696 79 31 2 246 321 390 467 5.81e-21 94.0
Msa0868180 AT1G13960.1 54.839 62 25 3 259 319 225 284 8.94e-14 72.4
Msa0868180 AT2G04880.2 61.905 63 23 1 259 321 280 341 6.54e-21 93.6
Msa0868180 AT2G04880.1 61.905 63 23 1 259 321 304 365 7.77e-21 93.6
Msa0868180 AT4G23550.1 50.000 80 36 1 242 321 124 199 7.92e-21 91.7
Msa0868180 AT4G26640.5 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0868180 AT4G26640.6 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0868180 AT4G26640.4 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0868180 AT4G26640.3 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0868180 AT5G49520.1 51.351 74 35 1 246 319 205 277 1.45e-20 92.0
Msa0868180 AT5G07100.1 46.739 92 48 1 230 321 202 292 1.51e-20 90.9
Msa0868180 AT1G29860.1 48.148 81 41 1 246 326 120 199 1.63e-20 90.5
Msa0868180 AT4G26640.2 54.545 77 31 2 248 321 364 439 2.16e-20 92.4
Msa0868180 AT5G26170.1 51.389 72 34 1 249 320 100 170 2.18e-20 87.4
Msa0868180 AT4G26640.1 54.545 77 31 2 248 321 292 367 2.24e-20 92.0
Msa0868180 AT4G26640.7 54.545 77 31 2 248 321 324 399 2.39e-20 92.4
Msa0868180 AT5G56270.1 53.659 82 37 1 243 324 468 548 3.40e-20 92.0
Msa0868180 AT5G56270.1 52.632 57 25 2 263 319 274 328 5.39e-11 64.3
Msa0868180 AT4G18170.1 46.154 91 48 1 231 321 141 230 5.84e-20 89.4
Msa0868180 AT2G40740.1 34.532 139 78 3 182 317 102 230 9.09e-20 88.6
Msa0868180 AT2G37260.3 48.810 84 42 1 238 321 245 327 1.23e-19 89.0
Msa0868180 AT2G37260.3 53.448 58 25 2 263 320 86 141 3.03e-12 67.4
Msa0868180 AT2G40740.3 34.532 139 78 3 182 317 111 239 1.28e-19 88.2
Msa0868180 AT2G37260.2 48.810 84 42 1 238 321 243 325 1.30e-19 89.0
Msa0868180 AT2G37260.2 53.448 58 25 2 263 320 84 139 3.14e-12 67.4
Msa0868180 AT4G39410.1 47.126 87 42 2 237 320 195 280 1.85e-19 87.8
Msa0868180 AT2G37260.1 48.810 84 42 1 238 321 325 407 2.32e-19 89.0
Msa0868180 AT2G37260.1 53.448 58 25 2 263 320 166 221 2.71e-12 67.8
Msa0868180 AT4G04450.2 50.000 74 37 0 246 319 182 255 2.88e-19 88.6
Msa0868180 AT4G26440.1 51.220 82 39 1 243 324 353 433 2.91e-19 89.4
Msa0868180 AT4G26440.1 53.448 58 25 2 263 320 179 234 1.13e-11 66.2
Msa0868180 AT4G04450.1 50.000 74 37 0 246 319 276 349 5.19e-19 88.2
Msa0868180 AT2G47260.1 43.902 82 45 1 238 319 150 230 6.19e-19 86.7
Msa0868180 AT1G69310.4 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0868180 AT1G69310.2 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0868180 AT1G69310.1 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0868180 AT4G31800.2 46.575 73 39 0 247 319 96 168 1.01e-18 84.7
Msa0868180 AT3G01080.2 53.165 79 33 2 246 321 325 402 1.31e-18 87.0
Msa0868180 AT3G01080.2 56.452 62 24 3 259 319 201 260 1.56e-14 74.7
Msa0868180 AT4G31800.1 46.575 73 39 0 247 319 161 233 1.43e-18 85.5
Msa0868180 AT3G01080.1 53.165 79 33 2 246 321 287 364 1.52e-18 86.7
Msa0868180 AT3G01080.1 56.452 62 24 3 259 319 163 222 1.88e-14 74.3
Msa0868180 AT1G62300.1 48.649 74 38 0 246 319 296 369 1.72e-18 86.7
Msa0868180 AT4G22070.4 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0868180 AT4G22070.3 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0868180 AT4G22070.2 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0868180 AT4G22070.1 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0868180 AT5G46350.1 50.685 73 35 1 249 321 170 241 2.67e-18 84.7
Msa0868180 AT5G15130.2 47.561 82 42 1 240 321 164 244 3.16e-18 85.9
Msa0868180 AT5G15130.1 47.561 82 42 1 240 321 206 286 3.31e-18 85.9
Msa0868180 AT5G45260.1 33.133 166 79 4 156 319 1132 1267 7.86e-18 85.5
Msa0868180 AT2G44745.1 41.414 99 54 2 224 319 104 201 1.08e-17 81.3
Msa0868180 AT3G62340.1 47.500 80 41 1 240 319 96 174 1.28e-17 82.0
Msa0868180 AT4G01720.1 47.368 76 40 0 246 321 223 298 1.98e-17 83.6
Msa0868180 AT1G68150.1 46.914 81 40 1 263 340 236 316 6.43e-17 81.3
Msa0868180 AT1G64000.1 40.449 89 49 2 241 326 90 177 8.83e-17 78.2
Msa0868180 AT4G30935.1 52.542 59 27 1 263 321 332 389 9.40e-17 81.3
Msa0868180 AT1G55600.1 44.156 77 42 1 243 319 288 363 9.44e-17 81.3
Msa0868180 AT5G41570.1 42.353 85 45 2 245 326 78 161 1.22e-16 77.4
Msa0868180 AT2G46130.1 42.857 84 44 2 246 326 11 93 1.89e-16 74.7
Msa0868180 AT1G18860.1 48.101 79 40 1 241 319 219 296 2.15e-16 80.5
Msa0868180 AT5G13080.1 46.053 76 39 2 258 333 63 136 2.20e-16 75.5
Msa0868180 AT1G80840.1 38.776 98 54 2 236 328 116 212 2.84e-16 78.6
Msa0868180 AT2G25000.2 44.595 74 41 0 247 320 88 161 3.79e-16 77.0
Msa0868180 AT2G25000.4 44.595 74 41 0 247 320 88 161 3.79e-16 77.0
Msa0868180 AT2G25000.3 44.595 74 41 0 247 320 110 183 6.74e-16 76.6
Msa0868180 AT2G30250.1 43.023 86 45 2 244 326 307 391 8.86e-16 78.2
Msa0868180 AT3G01970.1 48.438 64 32 1 258 321 61 123 9.55e-16 73.9
Msa0868180 AT2G25000.1 44.595 74 41 0 247 320 131 204 9.60e-16 76.6
Msa0868180 AT2G21900.1 54.386 57 25 1 263 319 110 165 9.81e-16 75.1
Msa0868180 AT5G64810.1 45.070 71 38 1 249 319 97 166 2.15e-15 73.9
Msa0868180 AT3G01080.3 57.895 57 22 2 263 319 206 260 9.11e-15 74.7
Msa0868180 AT5G43290.1 50.667 75 33 2 245 319 100 170 1.00e-14 73.9
Msa0868180 AT1G69310.3 46.512 86 37 4 237 319 120 199 1.33e-14 73.6
Msa0868180 AT4G11070.2 43.373 83 44 2 238 317 84 166 2.65e-13 69.7
Msa0868180 AT4G11070.1 43.373 83 44 2 238 317 116 198 2.93e-13 70.1
Msa0868180 AT1G69810.1 37.374 99 53 2 222 319 171 261 7.05e-13 69.3
Msa0868180 AT1G69810.2 37.374 99 53 2 222 319 113 203 8.00e-13 68.9
Msa0868180 AT3G56400.1 32.743 113 71 3 209 317 66 177 1.22e-12 67.8
Msa0868180 AT2G46130.2 39.286 84 43 2 246 326 11 89 1.95e-12 63.5
Msa0868180 AT1G66560.1 49.153 59 28 1 261 317 102 160 2.25e-12 66.6
Msa0868180 AT5G24110.1 47.368 57 28 1 263 317 114 170 2.45e-12 67.0
Msa0868180 AT2G46400.1 35.789 95 57 2 227 317 67 161 3.12e-12 66.6
Msa0868180 AT4G23810.1 33.929 112 71 2 209 317 104 215 3.98e-12 66.6
Msa0868180 AT4G12020.6 50.877 57 26 2 263 319 469 523 3.24e-11 65.1
Msa0868180 AT4G12020.8 50.877 57 26 2 263 319 469 523 3.24e-11 65.1
Msa0868180 AT4G12020.7 50.877 57 26 2 263 319 469 523 3.36e-11 65.1
Msa0868180 AT4G12020.1 50.877 57 26 2 263 319 469 523 3.49e-11 65.1
Msa0868180 AT4G12020.9 50.877 57 26 2 263 319 469 523 3.49e-11 65.1
Msa0868180 AT4G12020.10 50.877 57 26 2 263 319 469 523 3.51e-11 65.1
Msa0868180 AT4G12020.3 50.877 57 26 2 263 319 469 523 3.64e-11 65.1
Msa0868180 AT4G12020.2 50.877 57 26 2 263 319 469 523 3.87e-11 65.1
Msa0868180 AT4G12020.5 50.877 57 26 2 263 319 402 456 3.92e-11 65.1
Msa0868180 AT4G12020.4 50.877 57 26 2 263 319 469 523 4.05e-11 65.1
Msa0868180 AT4G12020.11 50.877 57 26 2 263 319 469 523 5.16e-11 64.7
Msa0868180 AT2G40750.1 34.444 90 49 2 230 317 128 209 6.37e-11 63.2

Find 127 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCCTCTTTCTAAAATA+TGG 0.192604 6_1:+1702308 Msa0868180:exon
CGCTCAACGTGTTTCCTTGC+TGG 0.192745 6_1:-1704502 None:intergenic
GAACATTCCGATGACGTTTC+AGG 0.218659 6_1:+1702993 Msa0868180:CDS
AGAGAGAGGGAGGGAGGAAA+TGG 0.242866 6_1:-1702234 None:intergenic
GTATTTGAGTCAACGTAATA+AGG 0.271448 6_1:+1704628 Msa0868180:exon
TTAATATAGAGATGGAAAAT+TGG 0.281523 6_1:+1704796 Msa0868180:three_prime_UTR
TTTATGTCATCTGCTATTAC+TGG 0.300028 6_1:+1702843 Msa0868180:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 6_1:+1704606 Msa0868180:CDS
AAATTGTTGAAGAGTTAAAA+TGG 0.319358 6_1:-1702274 None:intergenic
GAGCTCAAAACGACGTCGTT+TGG 0.354917 6_1:-1702744 None:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 6_1:-1702373 None:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 6_1:-1702527 None:intergenic
GAGTGAAAGGTTGAGGGATG+TGG 0.364284 6_1:-1702203 None:intergenic
GGCGCGTGACGCACGGAGAT+TGG 0.371570 6_1:-1702669 None:intergenic
GAGAGAGGGAGGGAGGAAAT+GGG 0.373085 6_1:-1702233 None:intergenic
TATAAATCTTACCGTGGATA+TGG 0.383323 6_1:-1704357 None:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 6_1:-1702627 None:intergenic
AGGGAGGGAGGAAATGGGTT+TGG 0.392281 6_1:-1702228 None:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 6_1:-1702422 None:intergenic
GAGATAGCTGATGTCGCCGC+TGG 0.407243 6_1:-1702912 None:intergenic
GAGAAGAGGAAAAGAGAGAG+AGG 0.420812 6_1:-1702248 None:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 6_1:+1702861 Msa0868180:CDS
CACTATTCAAGCTGCGATGC+AGG 0.421891 6_1:+1704579 Msa0868180:CDS
AAAATTATGAGTGGAAGTTA+AGG 0.423088 6_1:+1704729 Msa0868180:three_prime_UTR
GCGATGCAGGAGAACGCATC+CGG 0.423327 6_1:+1704592 Msa0868180:CDS
GCTCAACGTGTTTCCTTGCT+GGG 0.423889 6_1:-1704501 None:intergenic
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 6_1:-1702517 None:intergenic
AGGGATGTGGAGATATATAA+AGG 0.426967 6_1:-1702190 None:intergenic
AACATTCCGATGACGTTTCA+GGG 0.431021 6_1:+1702994 Msa0868180:CDS
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 6_1:-1702428 None:intergenic
CTTGGAGGAAAGTGGGAGAA+TGG 0.444178 6_1:+1704662 Msa0868180:three_prime_UTR
TATTTGAGTCAACGTAATAA+GGG 0.444413 6_1:+1704629 Msa0868180:exon
CGGCGGAAAACCGCCGCTAT+CGG 0.446685 6_1:+1702935 Msa0868180:CDS
AGAGGAAAAGAGAGAGAGGG+AGG 0.448691 6_1:-1702244 None:intergenic
AATAATGGTTGGCAAGACTT+TGG 0.450809 6_1:-1704853 None:intergenic
GAAAAGAGAGAGAGGGAGGG+AGG 0.452154 6_1:-1702240 None:intergenic
ATCTCTTTACTTAACCGAAC+CGG 0.452961 6_1:+1702498 Msa0868180:CDS
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 6_1:-1702441 None:intergenic
GAAGATGAGGAGGAATGAAC+CGG 0.456286 6_1:-1702543 None:intergenic
ATGCTGATTGTAACGTATGA+AGG 0.457248 6_1:+1704544 Msa0868180:CDS
GAGTACTCATGGCGGAAATA+CGG 0.458622 6_1:+1704312 Msa0868180:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.458926 6_1:-1702600 None:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 6_1:+1702862 Msa0868180:CDS
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 6_1:-1702427 None:intergenic
TTTGGAAGAGTGAAAGGTTG+AGG 0.471055 6_1:-1702210 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.473843 6_1:-1704295 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 6_1:-1704538 None:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 6_1:+1702524 Msa0868180:CDS
GATTCAATCCACTCCTTCAC+CGG 0.477697 6_1:+1702581 Msa0868180:CDS
TTGGAAGAGTGAAAGGTTGA+GGG 0.486060 6_1:-1702209 None:intergenic
CTCCTCATCTTCATCACCAC+CGG 0.490654 6_1:+1702554 Msa0868180:CDS
GGAGAACGCATCCGGGATTG+TGG 0.492453 6_1:+1704600 Msa0868180:CDS
CGGCGGTGCCGTCCAAGAAA+AGG 0.499093 6_1:+1702955 Msa0868180:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 6_1:-1702526 None:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 6_1:+1702849 Msa0868180:CDS
TGAACCGGGCGTGACCGGTT+CGG 0.504434 6_1:-1702512 None:intergenic
AATCAGCATCGTTGGATCGT+CGG 0.504895 6_1:-1704530 None:intergenic
AAATATGGCAGTGGAACTCA+TGG 0.506689 6_1:+1702323 Msa0868180:exon
TACAAGTGTAGTACAGTGAG+AGG 0.510799 6_1:+1704475 Msa0868180:CDS
GAGGAAAAGAGAGAGAGGGA+GGG 0.516020 6_1:-1702243 None:intergenic
ATTGGCGCCGGTGACAGTGC+AGG 0.516466 6_1:-1702651 None:intergenic
ATTATGAGTGGAAGTTAAGG+TGG 0.519240 6_1:+1704732 Msa0868180:three_prime_UTR
CGGAAAACCGCCGCTATCGG+CGG 0.520458 6_1:+1702938 Msa0868180:CDS
AATCTCCGTGCGTCACGCGC+CGG 0.525708 6_1:+1702671 Msa0868180:CDS
AGTTAAAATGGCATGAGAAG+AGG 0.527637 6_1:-1702262 None:intergenic
AAGAAAAGGTGTCATGATCA+TGG 0.529135 6_1:+1702969 Msa0868180:CDS
TCCGTCACCTGCACTGTCAC+CGG 0.537546 6_1:+1702644 Msa0868180:CDS
GGAAGCGTTAACGGGAAACA+AGG 0.537738 6_1:+1702870 Msa0868180:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 6_1:+1704601 Msa0868180:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 6_1:-1704342 None:intergenic
ATACAAGAGGCTGCATCAGA+AGG 0.544462 6_1:+1702375 Msa0868180:CDS
ATACGGTCAGAAACCGATCA+AGG 0.544971 6_1:+1704329 Msa0868180:CDS
CTCTTTCTAAAATATGGCAG+TGG 0.548169 6_1:+1702314 Msa0868180:exon
GTTGGTGTTTGAACCGGTGA+AGG 0.548366 6_1:-1702594 None:intergenic
AGAAGAGGAAAAGAGAGAGA+GGG 0.550356 6_1:-1702247 None:intergenic
TTCCGCCATGAGTACTCGTC+CGG 0.550529 6_1:-1704306 None:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 6_1:+1702508 Msa0868180:CDS
GCTCGCCGGCGCGTGACGCA+CGG 0.552645 6_1:-1702676 None:intergenic
TGCTGATTGTAACGTATGAA+GGG 0.555435 6_1:+1704545 Msa0868180:CDS
AATGGGTTTGGAAGAGTGAA+AGG 0.555725 6_1:-1702216 None:intergenic
TTATGAGTGGAAGTTAAGGT+GGG 0.557236 6_1:+1704733 Msa0868180:three_prime_UTR
CGATGCAGGAGAACGCATCC+GGG 0.559528 6_1:+1704593 Msa0868180:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 6_1:-1704611 None:intergenic
TTGGACGGCACCGCCGATAG+CGG 0.561363 6_1:-1702948 None:intergenic
GCGGCGACATCAGCTATCTC+CGG 0.561423 6_1:+1702915 Msa0868180:CDS
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 6_1:+1704254 Msa0868180:CDS
GACGGCACCGCCGATAGCGG+CGG 0.571524 6_1:-1702945 None:intergenic
AAGATGAGGAGGAATGAACC+GGG 0.573874 6_1:-1702542 None:intergenic
AGATAGCTGATGTCGCCGCT+GGG 0.575991 6_1:-1702911 None:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.578616 6_1:-1702690 None:intergenic
GGAGTGGATTGAATCTGAAC+CGG 0.578656 6_1:-1702573 None:intergenic
TGACGCACGGAGATTGGCGC+CGG 0.582468 6_1:-1702663 None:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 6_1:-1702466 None:intergenic
CAGTGAGAGGGTGCCCAGCA+AGG 0.588389 6_1:+1704488 Msa0868180:CDS
GACAGTGCAGGTGACGGAGA+AGG 0.589986 6_1:-1702639 None:intergenic
CGCCATGAGTACTCGTCCGG+TGG 0.590482 6_1:-1704303 None:intergenic
GCCGGTGACAGTGCAGGTGA+CGG 0.596080 6_1:-1702645 None:intergenic
AGTGTCATGCTGTGTGGTTG+CGG 0.596455 6_1:-1702708 None:intergenic
TACCACCGGACGAGTACTCA+TGG 0.597468 6_1:+1704301 Msa0868180:CDS
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 6_1:+1702389 Msa0868180:CDS
GCGGTCTTTGAACTTATCGC+CGG 0.605125 6_1:-1704273 None:intergenic
AATATGGCAGTGGAACTCAT+GGG 0.612087 6_1:+1702324 Msa0868180:exon
TACGGTCAGAAACCGATCAA+GGG 0.612371 6_1:+1704330 Msa0868180:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.613126 6_1:-1702553 None:intergenic
ATTCGACCCTGAAACGTCAT+CGG 0.616411 6_1:-1703000 None:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 6_1:+1702384 Msa0868180:CDS
CGAGAATTCAAGCTCAACCA+TGG 0.618884 6_1:-1702781 None:intergenic
ATTTGAGTCAACGTAATAAG+GGG 0.619420 6_1:+1704630 Msa0868180:exon
TATGAGTGGAAGTTAAGGTG+GGG 0.623067 6_1:+1704734 Msa0868180:three_prime_UTR
TGTTTGAACCGGTGAAGGAG+TGG 0.635060 6_1:-1702589 None:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 6_1:+1703024 Msa0868180:CDS
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 6_1:+1702785 Msa0868180:CDS
GGAGGAAAGTGGGAGAATGG+AGG 0.648081 6_1:+1704665 Msa0868180:three_prime_UTR
GCTGATTGTAACGTATGAAG+GGG 0.650464 6_1:+1704546 Msa0868180:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 6_1:+1704346 Msa0868180:CDS
ACAAGTGTAGTACAGTGAGA+GGG 0.657147 6_1:+1704476 Msa0868180:CDS
AAAGACCGCCGATATACCAC+CGG 0.663684 6_1:+1704287 Msa0868180:CDS
ATATGGCAGTGGAACTCATG+GGG 0.666077 6_1:+1702325 Msa0868180:exon
GCGACATCAGCTATCTCCGG+CGG 0.667774 6_1:+1702918 Msa0868180:CDS
AACCGGTGGTGATGAAGATG+AGG 0.672181 6_1:-1702556 None:intergenic
CTCGTCCGGTGGTATATCGG+CGG 0.695312 6_1:-1704292 None:intergenic
GTGGATTGAATCTGAACCGG+TGG 0.703786 6_1:-1702570 None:intergenic
GAAGCGTTAACGGGAAACAA+GGG 0.708559 6_1:+1702871 Msa0868180:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.710920 6_1:-1702714 None:intergenic
TGTACCTTCTCTTGACACAG+TGG 0.717082 6_1:-1703028 None:intergenic
AGATGAGGAGGAATGAACCG+GGG 0.738996 6_1:-1702541 None:intergenic
CACCGGACGAGTACTCATGG+CGG 0.773189 6_1:+1704304 Msa0868180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTTTGATTTTTGAT+TGG + chr6_1:1703333-1703352 Msa0868180:intron 10.0%
!! ATTAATTAGAAATAAAGAAA+GGG + chr6_1:1703381-1703400 Msa0868180:intron 10.0%
!!! AAAATATTTTAATATAGAGA+TGG + chr6_1:1704788-1704807 Msa0868180:three_prime_UTR 10.0%
!! GTAAAAATATCAAAATTGTT+AGG - chr6_1:1703282-1703301 None:intergenic 15.0%
!!! AACAATTTTGATATTTTTAC+CGG + chr6_1:1703282-1703301 Msa0868180:intron 15.0%
!! CATTAATTAGAAATAAAGAA+AGG + chr6_1:1703380-1703399 Msa0868180:intron 15.0%
!! CATAAGTCATAATAAAAAAT+GGG - chr6_1:1703739-1703758 None:intergenic 15.0%
!! TCATAAGTCATAATAAAAAA+TGG - chr6_1:1703740-1703759 None:intergenic 15.0%
!!! TGATTTTTTTCAGAAAAAAT+AGG + chr6_1:1704229-1704248 Msa0868180:intron 15.0%
!!! GATTTTTTTCAGAAAAAATA+GGG + chr6_1:1704230-1704249 Msa0868180:intron 15.0%
!! AAATTGTTGAAGAGTTAAAA+TGG - chr6_1:1702277-1702296 None:intergenic 20.0%
!!! CTTTTTGTTCATCTATTTTT+GGG - chr6_1:1702353-1702372 None:intergenic 20.0%
!! TTTGTCATTATGTTAATCTA+CGG - chr6_1:1703188-1703207 None:intergenic 20.0%
!! TATGAGTTCAAATTAAATTG+AGG + chr6_1:1703755-1703774 Msa0868180:intron 20.0%
!! ATGAGTTCAAATTAAATTGA+GGG + chr6_1:1703756-1703775 Msa0868180:intron 20.0%
!!! ATATCATTTGATTCAAGTTT+TGG + chr6_1:1703806-1703825 Msa0868180:intron 20.0%
!!! TAGTAATGTTTTAGTTAACT+TGG + chr6_1:1704069-1704088 Msa0868180:intron 20.0%
!! ATAATAGTCAACATAGTTAA+CGG - chr6_1:1704403-1704422 None:intergenic 20.0%
!!! TTATTCTTTCTTTTAATCAG+AGG + chr6_1:1704448-1704467 Msa0868180:intron 20.0%
!!! TTTTGTTAGAAAATTATGAG+TGG + chr6_1:1704720-1704739 Msa0868180:three_prime_UTR 20.0%
!! TTAATATAGAGATGGAAAAT+TGG + chr6_1:1704796-1704815 Msa0868180:three_prime_UTR 20.0%
!!! TTCATCCTCTTTCTAAAATA+TGG + chr6_1:1702308-1702327 Msa0868180:exon 25.0%
!! GCTTTTTGTTCATCTATTTT+TGG - chr6_1:1702354-1702373 None:intergenic 25.0%
!!! GAGTTTTTTGAACTTAGAAA+CGG - chr6_1:1702478-1702497 None:intergenic 25.0%
! ATTCAAAGGTAAACTCTAAA+AGG - chr6_1:1703091-1703110 None:intergenic 25.0%
!!! TTTTAGAGTTTACCTTTGAA+TGG + chr6_1:1703090-1703109 Msa0868180:intron 25.0%
!!! TTTTGATATTTTTACCGGTT+AGG + chr6_1:1703287-1703306 Msa0868180:intron 25.0%
! TAGAAATAAAGAAAGGGAAA+AGG + chr6_1:1703387-1703406 Msa0868180:intron 25.0%
! TGTGGTTAAAATGCTTTAAT+AGG + chr6_1:1703492-1703511 Msa0868180:intron 25.0%
!!! TCCTATTTTGAATTACTTCA+GGG - chr6_1:1703854-1703873 None:intergenic 25.0%
!!! ATCCTATTTTGAATTACTTC+AGG - chr6_1:1703855-1703874 None:intergenic 25.0%
! AACATTACTATGATCTTATG+CGG - chr6_1:1704059-1704078 None:intergenic 25.0%
! ATAAATCAACGTTAGAAAAC+AGG - chr6_1:1704432-1704451 None:intergenic 25.0%
! TATTTGAGTCAACGTAATAA+GGG + chr6_1:1704629-1704648 Msa0868180:exon 25.0%
! AATAAGGGGAATTAAAAACT+TGG + chr6_1:1704644-1704663 Msa0868180:exon 25.0%
! AAAATTATGAGTGGAAGTTA+AGG + chr6_1:1704729-1704748 Msa0868180:three_prime_UTR 25.0%
AGTTGAGTGTTTAATTGAGT+TGG - chr6_1:1702444-1702463 None:intergenic 30.0%
TTTATGTCATCTGCTATTAC+TGG + chr6_1:1702843-1702862 Msa0868180:CDS 30.0%
ATTATGTTAATCTACGGAGT+AGG - chr6_1:1703182-1703201 None:intergenic 30.0%
!! ATCACTTGTATGAGTTTTGA+TGG - chr6_1:1703214-1703233 None:intergenic 30.0%
AAACGTTAATGCATGTAATC+GGG - chr6_1:1703257-1703276 None:intergenic 30.0%
CAAACGTTAATGCATGTAAT+CGG - chr6_1:1703258-1703277 None:intergenic 30.0%
AAAGAAAGGGAAAAGGTTAA+TGG + chr6_1:1703394-1703413 Msa0868180:intron 30.0%
TAAGTGAAGGGAATTGAAAA+AGG - chr6_1:1703639-1703658 None:intergenic 30.0%
AGTCAAAGCAATTAAGTGAA+GGG - chr6_1:1703651-1703670 None:intergenic 30.0%
ACCCTGAAGTAATTCAAAAT+AGG + chr6_1:1703850-1703869 Msa0868180:intron 30.0%
AAGTTAAGTTAGACCTAGAT+TGG + chr6_1:1703989-1704008 Msa0868180:intron 30.0%
AAAACATTCATGGTCATTCA+TGG - chr6_1:1704034-1704053 None:intergenic 30.0%
AGTATTTCCCATATTCCAAT+TGG - chr6_1:1704111-1704130 None:intergenic 30.0%
TATAAATCTTACCGTGGATA+TGG - chr6_1:1704360-1704379 None:intergenic 30.0%
ATTGTGTATAAATCTTACCG+TGG - chr6_1:1704366-1704385 None:intergenic 30.0%
GTATTTGAGTCAACGTAATA+AGG + chr6_1:1704628-1704647 Msa0868180:exon 30.0%
ATTTGAGTCAACGTAATAAG+GGG + chr6_1:1704630-1704649 Msa0868180:exon 30.0%
ATTAAAAACTTGGAGGAAAG+TGG + chr6_1:1704654-1704673 Msa0868180:three_prime_UTR 30.0%
TTAAAAACTTGGAGGAAAGT+GGG + chr6_1:1704655-1704674 Msa0868180:three_prime_UTR 30.0%
AGGGATGTGGAGATATATAA+AGG - chr6_1:1702193-1702212 None:intergenic 35.0%
AGTTAAAATGGCATGAGAAG+AGG - chr6_1:1702265-1702284 None:intergenic 35.0%
!! CACTGCCATATTTTAGAAAG+AGG - chr6_1:1702316-1702335 None:intergenic 35.0%
!! CTCTTTCTAAAATATGGCAG+TGG + chr6_1:1702314-1702333 Msa0868180:exon 35.0%
TGAACAAAAAGCCATACAAG+AGG + chr6_1:1702362-1702381 Msa0868180:CDS 35.0%
!! TTGAGTTGGTTGATGAGAAA+GGG - chr6_1:1702430-1702449 None:intergenic 35.0%
!! ATTGAGTTGGTTGATGAGAA+AGG - chr6_1:1702431-1702450 None:intergenic 35.0%
! TTTTGAACTTAGAAACGGTG+TGG - chr6_1:1702473-1702492 None:intergenic 35.0%
ATCTCTTTACTTAACCGAAC+CGG + chr6_1:1702498-1702517 Msa0868180:CDS 35.0%
!!! AAAGTGTTTTGGTAGAGACA+GGG - chr6_1:1702619-1702638 None:intergenic 35.0%
! ATGATCATGACACCTTTTCT+TGG - chr6_1:1702970-1702989 None:intergenic 35.0%
!! AAGAAAAGGTGTCATGATCA+TGG + chr6_1:1702969-1702988 Msa0868180:CDS 35.0%
ATTGAGTGAAACGCAGATAA+AGG - chr6_1:1703062-1703081 None:intergenic 35.0%
AGAGTTTACCTTTGAATGGA+AGG + chr6_1:1703094-1703113 Msa0868180:intron 35.0%
! TGTTTCTGATGTCCAATATG+TGG + chr6_1:1703117-1703136 Msa0868180:intron 35.0%
TCCACATACTTTAACCTAAC+CGG - chr6_1:1703304-1703323 None:intergenic 35.0%
GTTAGGTTAAAGTATGTGGA+CGG + chr6_1:1703304-1703323 Msa0868180:intron 35.0%
GTGAACGAGTCAAACAAAAA+AGG - chr6_1:1703361-1703380 None:intergenic 35.0%
TGAAAGTGACAAGACAACAT+AGG + chr6_1:1703527-1703546 Msa0868180:intron 35.0%
GAAAGTGACAAGACAACATA+GGG + chr6_1:1703528-1703547 Msa0868180:intron 35.0%
CAGTCAAAGCAATTAAGTGA+AGG - chr6_1:1703652-1703671 None:intergenic 35.0%
AAAATAGGATCCCATGAGTT+AGG + chr6_1:1703865-1703884 Msa0868180:intron 35.0%
AAATAGGATCCCATGAGTTA+GGG + chr6_1:1703866-1703885 Msa0868180:intron 35.0%
! ATGGTCGTTCGTTTAAAATC+GGG - chr6_1:1704015-1704034 None:intergenic 35.0%
! CATGGTCGTTCGTTTAAAAT+CGG - chr6_1:1704016-1704035 None:intergenic 35.0%
TTATGCGGTCAAAACATTCA+TGG - chr6_1:1704044-1704063 None:intergenic 35.0%
! ACGTTTTACTCCTATCCAAT+TGG + chr6_1:1704093-1704112 Msa0868180:intron 35.0%
ACTCCTATCCAATTGGAATA+TGG + chr6_1:1704100-1704119 Msa0868180:intron 35.0%
CTCCTATCCAATTGGAATAT+GGG + chr6_1:1704101-1704120 Msa0868180:intron 35.0%
TTCCCATATTCCAATTGGAT+AGG - chr6_1:1704106-1704125 None:intergenic 35.0%
TCAGAAAAAATAGGGTGAAG+AGG + chr6_1:1704238-1704257 Msa0868180:intron 35.0%
! ATGCTGATTGTAACGTATGA+AGG + chr6_1:1704544-1704563 Msa0868180:CDS 35.0%
! TGCTGATTGTAACGTATGAA+GGG + chr6_1:1704545-1704564 Msa0868180:CDS 35.0%
AAGGGGAATTAAAAACTTGG+AGG + chr6_1:1704647-1704666 Msa0868180:three_prime_UTR 35.0%
ATTATGAGTGGAAGTTAAGG+TGG + chr6_1:1704732-1704751 Msa0868180:three_prime_UTR 35.0%
TTATGAGTGGAAGTTAAGGT+GGG + chr6_1:1704733-1704752 Msa0868180:three_prime_UTR 35.0%
TTGGAAGAGTGAAAGGTTGA+GGG - chr6_1:1702212-1702231 None:intergenic 40.0%
TTTGGAAGAGTGAAAGGTTG+AGG - chr6_1:1702213-1702232 None:intergenic 40.0%
! AATGGGTTTGGAAGAGTGAA+AGG - chr6_1:1702219-1702238 None:intergenic 40.0%
AGAAGAGGAAAAGAGAGAGA+GGG - chr6_1:1702250-1702269 None:intergenic 40.0%
AAATATGGCAGTGGAACTCA+TGG + chr6_1:1702323-1702342 Msa0868180:exon 40.0%
AATATGGCAGTGGAACTCAT+GGG + chr6_1:1702324-1702343 Msa0868180:exon 40.0%
ATCAGAAGGACTCAAAGGTA+TGG + chr6_1:1702389-1702408 Msa0868180:CDS 40.0%
!! TTGGTTGATGAGAAAGGGTT+AGG - chr6_1:1702425-1702444 None:intergenic 40.0%
!!! GAAAGTGTTTTGGTAGAGAC+AGG - chr6_1:1702620-1702639 None:intergenic 40.0%
CTCAAACACGAAAAACTCCA+TGG + chr6_1:1702764-1702783 Msa0868180:CDS 40.0%
TCATCTGCTATTACTGGTGA+TGG + chr6_1:1702849-1702868 Msa0868180:CDS 40.0%
! TTCGATTTTTCTCAACCCAG+CGG + chr6_1:1702896-1702915 Msa0868180:CDS 40.0%
! TCATGACACCTTTTCTTGGA+CGG - chr6_1:1702966-1702985 None:intergenic 40.0%
AACATTCCGATGACGTTTCA+GGG + chr6_1:1702994-1703013 Msa0868180:CDS 40.0%
! AAACGCAGATAAAGGAGTGT+AGG - chr6_1:1703054-1703073 None:intergenic 40.0%
CAGAAACACCTTCCATTCAA+AGG - chr6_1:1703105-1703124 None:intergenic 40.0%
TCGCAAACACTACCACATAT+TGG - chr6_1:1703132-1703151 None:intergenic 40.0%
ACCGGTTAGGTTAAAGTATG+TGG + chr6_1:1703300-1703319 Msa0868180:intron 40.0%
! ACGTTTGGAGTCAACGATTT+CGG + chr6_1:1703463-1703482 Msa0868180:intron 40.0%
! TATTTTGCTAACATGCGCTG+GGG - chr6_1:1703710-1703729 None:intergenic 40.0%
! CTATTTTGCTAACATGCGCT+GGG - chr6_1:1703711-1703730 None:intergenic 40.0%
! ACTATTTTGCTAACATGCGC+TGG - chr6_1:1703712-1703731 None:intergenic 40.0%
ACTACGAAACCCTAACTCAT+GGG - chr6_1:1703878-1703897 None:intergenic 40.0%
! GTTTAAAATCGGGCCAATCT+AGG - chr6_1:1704005-1704024 None:intergenic 40.0%
TACAAGTGTAGTACAGTGAG+AGG + chr6_1:1704475-1704494 Msa0868180:CDS 40.0%
ACAAGTGTAGTACAGTGAGA+GGG + chr6_1:1704476-1704495 Msa0868180:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG - chr6_1:1704541-1704560 None:intergenic 40.0%
GCTGATTGTAACGTATGAAG+GGG + chr6_1:1704546-1704565 Msa0868180:CDS 40.0%
AAATACCAAACCCACAATCC+CGG - chr6_1:1704614-1704633 None:intergenic 40.0%
TATGAGTGGAAGTTAAGGTG+GGG + chr6_1:1704734-1704753 Msa0868180:three_prime_UTR 40.0%
GAGAAGAGGAAAAGAGAGAG+AGG - chr6_1:1702251-1702270 None:intergenic 45.0%
ATATGGCAGTGGAACTCATG+GGG + chr6_1:1702325-1702344 Msa0868180:exon 45.0%
TTCTGATGCAGCCTCTTGTA+TGG - chr6_1:1702376-1702395 None:intergenic 45.0%
ATACAAGAGGCTGCATCAGA+AGG + chr6_1:1702375-1702394 Msa0868180:CDS 45.0%
GAACTTAGAAACGGTGTGGT+CGG - chr6_1:1702469-1702488 None:intergenic 45.0%
AAGATGAGGAGGAATGAACC+GGG - chr6_1:1702545-1702564 None:intergenic 45.0%
GAAGATGAGGAGGAATGAAC+CGG - chr6_1:1702546-1702565 None:intergenic 45.0%
!! GGAGTGGATTGAATCTGAAC+CGG - chr6_1:1702576-1702595 None:intergenic 45.0%
GATTCAATCCACTCCTTCAC+CGG + chr6_1:1702581-1702600 Msa0868180:CDS 45.0%
!!! TGTTTTGGTAGAGACAGGGT+TGG - chr6_1:1702615-1702634 None:intergenic 45.0%
!!! GACGGAGAAGGAAAGTGTTT+TGG - chr6_1:1702630-1702649 None:intergenic 45.0%
AAATCGAGTGTCATGCTGTG+TGG - chr6_1:1702717-1702736 None:intergenic 45.0%
CGAGAATTCAAGCTCAACCA+TGG - chr6_1:1702784-1702803 None:intergenic 45.0%
GGTTGAGCTTGAATTCTCGA+AGG + chr6_1:1702785-1702804 Msa0868180:CDS 45.0%
!! ACTGGTGATGGAAGCGTTAA+CGG + chr6_1:1702861-1702880 Msa0868180:CDS 45.0%
! GAAGCGTTAACGGGAAACAA+GGG + chr6_1:1702871-1702890 Msa0868180:CDS 45.0%
GAACATTCCGATGACGTTTC+AGG + chr6_1:1702993-1703012 Msa0868180:CDS 45.0%
ATTCGACCCTGAAACGTCAT+CGG - chr6_1:1703003-1703022 None:intergenic 45.0%
TGTACCTTCTCTTGACACAG+TGG - chr6_1:1703031-1703050 None:intergenic 45.0%
ACGTGAATTTGTCGTGTGAG+TGG + chr6_1:1703431-1703450 Msa0868180:intron 45.0%
CGTGAATTTGTCGTGTGAGT+GGG + chr6_1:1703432-1703451 Msa0868180:intron 45.0%
GTGAATTTGTCGTGTGAGTG+GGG + chr6_1:1703433-1703452 Msa0868180:intron 45.0%
! TTTGGAGTCAACGATTTCGG+TGG + chr6_1:1703466-1703485 Msa0868180:intron 45.0%
! ATTTTGCTAACATGCGCTGG+GGG - chr6_1:1703709-1703728 None:intergenic 45.0%
GACTACGAAACCCTAACTCA+TGG - chr6_1:1703879-1703898 None:intergenic 45.0%
! GAGTACTCATGGCGGAAATA+CGG + chr6_1:1704312-1704331 Msa0868180:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG + chr6_1:1704329-1704348 Msa0868180:CDS 45.0%
TACGGTCAGAAACCGATCAA+GGG + chr6_1:1704330-1704349 Msa0868180:CDS 45.0%
GGATATGGTGATCCCTTGAT+CGG - chr6_1:1704345-1704364 None:intergenic 45.0%
TCAAGGGATCACCATATCCA+CGG + chr6_1:1704346-1704365 Msa0868180:CDS 45.0%
AATCAGCATCGTTGGATCGT+CGG - chr6_1:1704533-1704552 None:intergenic 45.0%
GAGTGAAAGGTTGAGGGATG+TGG - chr6_1:1702206-1702225 None:intergenic 50.0%
GAGGAAAAGAGAGAGAGGGA+GGG - chr6_1:1702246-1702265 None:intergenic 50.0%
AGAGGAAAAGAGAGAGAGGG+AGG - chr6_1:1702247-1702266 None:intergenic 50.0%
GCTGCATCAGAAGGACTCAA+AGG + chr6_1:1702384-1702403 Msa0868180:CDS 50.0%
AGATGAGGAGGAATGAACCG+GGG - chr6_1:1702544-1702563 None:intergenic 50.0%
CTCCTCATCTTCATCACCAC+CGG + chr6_1:1702554-1702573 Msa0868180:CDS 50.0%
! AACCGGTGGTGATGAAGATG+AGG - chr6_1:1702559-1702578 None:intergenic 50.0%
! GTGGATTGAATCTGAACCGG+TGG - chr6_1:1702573-1702592 None:intergenic 50.0%
TGTTTGAACCGGTGAAGGAG+TGG - chr6_1:1702592-1702611 None:intergenic 50.0%
! GTTGGTGTTTGAACCGGTGA+AGG - chr6_1:1702597-1702616 None:intergenic 50.0%
!! GACAGGGTTGGTGTTTGAAC+CGG - chr6_1:1702603-1702622 None:intergenic 50.0%
AGTGTCATGCTGTGTGGTTG+CGG - chr6_1:1702711-1702730 None:intergenic 50.0%
GAGCTCAAAACGACGTCGTT+TGG - chr6_1:1702747-1702766 None:intergenic 50.0%
!! CTGGTGATGGAAGCGTTAAC+GGG + chr6_1:1702862-1702881 Msa0868180:CDS 50.0%
!! GGAAGCGTTAACGGGAAACA+AGG + chr6_1:1702870-1702889 Msa0868180:CDS 50.0%
! AGTGCCACTGTGTCAAGAGA+AGG + chr6_1:1703024-1703043 Msa0868180:CDS 50.0%
TTTGTCGTGTGAGTGGGGTA+AGG + chr6_1:1703438-1703457 Msa0868180:intron 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG + chr6_1:1704254-1704273 Msa0868180:CDS 50.0%
GCGGTCTTTGAACTTATCGC+CGG - chr6_1:1704276-1704295 None:intergenic 50.0%
AAAGACCGCCGATATACCAC+CGG + chr6_1:1704287-1704306 Msa0868180:CDS 50.0%
GTACTCGTCCGGTGGTATAT+CGG - chr6_1:1704298-1704317 None:intergenic 50.0%
GCTCAACGTGTTTCCTTGCT+GGG - chr6_1:1704504-1704523 None:intergenic 50.0%
CACTATTCAAGCTGCGATGC+AGG + chr6_1:1704579-1704598 Msa0868180:CDS 50.0%
CTTGGAGGAAAGTGGGAGAA+TGG + chr6_1:1704662-1704681 Msa0868180:three_prime_UTR 50.0%
! AGGGAGGGAGGAAATGGGTT+TGG - chr6_1:1702231-1702250 None:intergenic 55.0%
GAGAGAGGGAGGGAGGAAAT+GGG - chr6_1:1702236-1702255 None:intergenic 55.0%
AGAGAGAGGGAGGGAGGAAA+TGG - chr6_1:1702237-1702256 None:intergenic 55.0%
GAAAAGAGAGAGAGGGAGGG+AGG - chr6_1:1702243-1702262 None:intergenic 55.0%
! CGGTGGTGATGAAGATGAGG+AGG - chr6_1:1702556-1702575 None:intergenic 55.0%
TGCGGTTGAACAAAGCTCGC+CGG - chr6_1:1702693-1702712 None:intergenic 55.0%
AGATAGCTGATGTCGCCGCT+GGG - chr6_1:1702914-1702933 None:intergenic 55.0%
GAGTGGGGTAAGGCTACGTT+TGG + chr6_1:1703448-1703467 Msa0868180:intron 55.0%
GGAGTCAACGATTTCGGTGG+TGG + chr6_1:1703469-1703488 Msa0868180:intron 55.0%
! CAACGATTTCGGTGGTGGTG+TGG + chr6_1:1703474-1703493 Msa0868180:intron 55.0%
TACCACCGGACGAGTACTCA+TGG + chr6_1:1704301-1704320 Msa0868180:CDS 55.0%
TTCCGCCATGAGTACTCGTC+CGG - chr6_1:1704309-1704328 None:intergenic 55.0%
CGCTCAACGTGTTTCCTTGC+TGG - chr6_1:1704505-1704524 None:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG + chr6_1:1704601-1704620 Msa0868180:CDS 55.0%
GGAGGAAAGTGGGAGAATGG+AGG + chr6_1:1704665-1704684 Msa0868180:three_prime_UTR 55.0%
TTAACCGAACCGGTCACGCC+CGG + chr6_1:1702508-1702527 Msa0868180:CDS 60.0%
!! GACAGTGCAGGTGACGGAGA+AGG - chr6_1:1702642-1702661 None:intergenic 60.0%
TCCGTCACCTGCACTGTCAC+CGG + chr6_1:1702644-1702663 Msa0868180:CDS 60.0%
GAGATAGCTGATGTCGCCGC+TGG - chr6_1:1702915-1702934 None:intergenic 60.0%
GCGGCGACATCAGCTATCTC+CGG + chr6_1:1702915-1702934 Msa0868180:CDS 60.0%
GCGACATCAGCTATCTCCGG+CGG + chr6_1:1702918-1702937 Msa0868180:CDS 60.0%
TGCTAACATGCGCTGGGGGT+GGG - chr6_1:1703705-1703724 None:intergenic 60.0%
TTGCTAACATGCGCTGGGGG+TGG - chr6_1:1703706-1703725 None:intergenic 60.0%
CTCGTCCGGTGGTATATCGG+CGG - chr6_1:1704295-1704314 None:intergenic 60.0%
CACCGGACGAGTACTCATGG+CGG + chr6_1:1704304-1704323 Msa0868180:CDS 60.0%
GCGATGCAGGAGAACGCATC+CGG + chr6_1:1704592-1704611 Msa0868180:CDS 60.0%
CGATGCAGGAGAACGCATCC+GGG + chr6_1:1704593-1704612 Msa0868180:CDS 60.0%
GGAGAACGCATCCGGGATTG+TGG + chr6_1:1704600-1704619 Msa0868180:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG + chr6_1:1704606-1704625 Msa0868180:CDS 60.0%
TGAACCGGGCGTGACCGGTT+CGG - chr6_1:1702515-1702534 None:intergenic 65.0%
GCCGGTGACAGTGCAGGTGA+CGG - chr6_1:1702648-1702667 None:intergenic 65.0%
!! ATTGGCGCCGGTGACAGTGC+AGG - chr6_1:1702654-1702673 None:intergenic 65.0%
TGACGCACGGAGATTGGCGC+CGG - chr6_1:1702666-1702685 None:intergenic 65.0%
AATCTCCGTGCGTCACGCGC+CGG + chr6_1:1702671-1702690 Msa0868180:CDS 65.0%
!! CGATAGCGGCGGTTTTCCGC+CGG - chr6_1:1702937-1702956 None:intergenic 65.0%
CGGCGGAAAACCGCCGCTAT+CGG + chr6_1:1702935-1702954 Msa0868180:CDS 65.0%
CGGAAAACCGCCGCTATCGG+CGG + chr6_1:1702938-1702957 Msa0868180:CDS 65.0%
TTGGACGGCACCGCCGATAG+CGG - chr6_1:1702951-1702970 None:intergenic 65.0%
!! CGGCGGTGCCGTCCAAGAAA+AGG + chr6_1:1702955-1702974 Msa0868180:CDS 65.0%
CGCCATGAGTACTCGTCCGG+TGG - chr6_1:1704306-1704325 None:intergenic 65.0%
!! CAGTGAGAGGGTGCCCAGCA+AGG + chr6_1:1704488-1704507 Msa0868180:CDS 65.0%
GCGTCTGAACCGGGCGTGAC+CGG - chr6_1:1702520-1702539 None:intergenic 70.0%
AACCGGGGCGCGTCTGAACC+GGG - chr6_1:1702529-1702548 None:intergenic 70.0%
GAACCGGGGCGCGTCTGAAC+CGG - chr6_1:1702530-1702549 None:intergenic 70.0%
GGCGCGTGACGCACGGAGAT+TGG - chr6_1:1702672-1702691 None:intergenic 70.0%
! GACGGCACCGCCGATAGCGG+CGG - chr6_1:1702948-1702967 None:intergenic 75.0%
! CGCCCGGTTCAGACGCGCCC+CGG + chr6_1:1702524-1702543 Msa0868180:CDS 80.0%
! GCTCGCCGGCGCGTGACGCA+CGG - chr6_1:1702679-1702698 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 1702176 1704865 1702176 ID=Msa0868180;Name=Msa0868180
chr6_1 mRNA 1702176 1704865 1702176 ID=Msa0868180-mRNA-1;Parent=Msa0868180;Name=Msa0868180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|1|1|3|220|340
chr6_1 exon 1702176 1703045 1702176 ID=Msa0868180-mRNA-1:exon:446;Parent=Msa0868180-mRNA-1
chr6_1 exon 1704242 1704367 1704242 ID=Msa0868180-mRNA-1:exon:447;Parent=Msa0868180-mRNA-1
chr6_1 exon 1704468 1704865 1704468 ID=Msa0868180-mRNA-1:exon:448;Parent=Msa0868180-mRNA-1
chr6_1 five_prime_UTR 1702176 1702326 1702176 ID=Msa0868180-mRNA-1:five_prime_utr;Parent=Msa0868180-mRNA-1
chr6_1 CDS 1702327 1703045 1702327 ID=Msa0868180-mRNA-1:cds;Parent=Msa0868180-mRNA-1
chr6_1 CDS 1704242 1704367 1704242 ID=Msa0868180-mRNA-1:cds;Parent=Msa0868180-mRNA-1
chr6_1 CDS 1704468 1704645 1704468 ID=Msa0868180-mRNA-1:cds;Parent=Msa0868180-mRNA-1
chr6_1 three_prime_UTR 1704646 1704865 1704646 ID=Msa0868180-mRNA-1:three_prime_utr;Parent=Msa0868180-mRNA-1
Gene Sequence

>Msa0868180

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACATCAGCTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCCAAGAAAAGGTGTCATGATCATGGTGAACATTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>Msa0868180

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATSAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*