AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083660 MtrunA17_Chr7g0272881 97.619 252 5 1 1 252 1 251 0.0 512
Msa1083660 MtrunA17_Chr2g0319981 31.019 216 126 10 8 207 19 227 5.90e-18 81.6
Msa1083660 MtrunA17_Chr4g0041461 31.361 169 90 7 52 207 74 229 1.78e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083660 AT3G05345.1 62.353 255 82 7 1 252 1 244 1.90e-109 315
Msa1083660 AT2G42750.1 31.081 222 124 9 2 207 25 233 9.88e-17 79.0

Find 102 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCACAGAGAATTATTT+TGG 0.134244 7_2:-83986074 Msa1083660:CDS
AACATGCTGGGTTGAAAATT+TGG 0.174458 7_2:+83985639 None:intergenic
CCTTCAATTTAAACATTCTT+TGG 0.229699 7_2:-83984896 Msa1083660:three_prime_UTR
TTAAACATTCTTTGGATTCC+TGG 0.261201 7_2:-83984888 Msa1083660:three_prime_UTR
TCGAAAAGCGGCTTTAATTT+CGG 0.279196 7_2:+83987197 None:intergenic
CTCAGTGCTATCTATAGTTT+GGG 0.286961 7_2:+83985585 None:intergenic
TTTGGTGTTTGGTTTCTCTA+TGG 0.303094 7_2:-83985037 Msa1083660:three_prime_UTR
TTCACATTTGTCTCTTCAAC+TGG 0.307988 7_2:-83986364 Msa1083660:CDS
TCTCAGTGCTATCTATAGTT+TGG 0.308680 7_2:+83985584 None:intergenic
AAAAGTCATGTAGTGAGATT+TGG 0.310240 7_2:+83985312 None:intergenic
CAACCTGAACGATCCCATTA+TGG 0.329530 7_2:+83987392 None:intergenic
GCACTCTGTCATCCAGAAAA+TGG 0.332795 7_2:-83987470 Msa1083660:five_prime_UTR
CCAAAGAATGTTTAAATTGA+AGG 0.339907 7_2:+83984896 None:intergenic
CACAGTTGGTCTTACCATAA+TGG 0.340880 7_2:-83987406 Msa1083660:exon
ACTTTGACATAATCTTCCTT+AGG 0.356859 7_2:+83985132 None:intergenic
GTTATTCTCAAACTTAGCTT+TGG 0.385126 7_2:+83985687 None:intergenic
CTACGGATGAATTTGGTGTT+TGG 0.396165 7_2:-83985048 Msa1083660:three_prime_UTR
TGTGGTTGACTTTGGGATCA+AGG 0.398210 7_2:-83985094 Msa1083660:three_prime_UTR
GTGTGTGCTACGGATGAATT+TGG 0.398410 7_2:-83985055 Msa1083660:three_prime_UTR
CTGTGTTTGATAACACTTGC+AGG 0.398736 7_2:-83985201 Msa1083660:three_prime_UTR
TGCCTCAGCTGATGTATCAT+AGG 0.402393 7_2:+83985732 None:intergenic
GGTTCACTTCACCCCTCCTA+TGG 0.409915 7_2:-83987449 Msa1083660:five_prime_UTR
ATGGTTCTGTGGTTGACTTT+GGG 0.411324 7_2:-83985101 Msa1083660:three_prime_UTR
GAACACTTGATAGTTATTAC+AGG 0.423882 7_2:+83984918 None:intergenic
CATCTCTGTTGAGGTCTGGA+TGG 0.429052 7_2:+83987069 None:intergenic
TTACCATAATGGGATCGTTC+AGG 0.432032 7_2:-83987395 Msa1083660:exon
ATTTCGGCGGCTGAGCAGTT+AGG 0.433399 7_2:+83987213 None:intergenic
CCAAAATAATTCTCTGTGAT+GGG 0.435014 7_2:+83986074 None:intergenic
GATGGTTCTGTGGTTGACTT+TGG 0.437474 7_2:-83985102 Msa1083660:three_prime_UTR
ACATAATGAATGCAACTTCT+CGG 0.437627 7_2:+83986100 None:intergenic
ACAGTTGGTCTTACCATAAT+GGG 0.440049 7_2:-83987405 Msa1083660:exon
TCCAAAATAATTCTCTGTGA+TGG 0.443344 7_2:+83986073 None:intergenic
CTTTGACATAATCTTCCTTA+GGG 0.465160 7_2:+83985133 None:intergenic
GTTAATGAGTTTCTTTGTGT+CGG 0.474240 7_2:-83986680 Msa1083660:CDS
GTCCAACAGCACACTGAACT+TGG 0.476520 7_2:+83986128 None:intergenic
AATTTGTGATGGTGTGTAGT+TGG 0.477410 7_2:+83986864 None:intergenic
AACAACTGTTTATAGGTCAT+GGG 0.479720 7_2:-83986159 Msa1083660:intron
CATAATGAATGCAACTTCTC+GGG 0.481674 7_2:+83986101 None:intergenic
ACGTAATACAACCACAATGA+TGG 0.482587 7_2:+83984999 None:intergenic
TCCTCTGCTTACACCGTCCT+CGG 0.486253 7_2:-83987243 Msa1083660:CDS
AGATACTCACTACTTTATAG+TGG 0.491771 7_2:+83984964 None:intergenic
TTTCAACCCAGCATGTTGAC+TGG 0.504611 7_2:-83985633 Msa1083660:CDS
TACCAAGTTCAGTGTGCTGT+TGG 0.507441 7_2:-83986130 Msa1083660:CDS
ATCTTCCTTAGGGTTACTCC+AGG 0.507761 7_2:+83985143 None:intergenic
TTCACACTCTGGTCTGTCAA+AGG 0.509595 7_2:+83986718 None:intergenic
TCGACTTACTTTCCCATAGG+AGG 0.511597 7_2:+83987436 None:intergenic
GACGGTGTAAGCAGAGGAAG+TGG 0.512906 7_2:+83987248 None:intergenic
CAGCTACTCCCTCTGACTAA+AGG 0.521356 7_2:+83985221 None:intergenic
TCACACTCTGGTCTGTCAAA+GGG 0.522302 7_2:+83986719 None:intergenic
TACGTTTCAATAATTTGTGA+TGG 0.522555 7_2:+83986853 None:intergenic
CGACTTACTTTCCCATAGGA+GGG 0.524856 7_2:+83987437 None:intergenic
CCGTGTAATTCAAGCATACC+AGG 0.525324 7_2:-83987015 Msa1083660:intron
TTTCAGAATACTGAGGTGTA+AGG 0.526250 7_2:+83985501 None:intergenic
AGATCAAAAGCTTCACACTC+TGG 0.531042 7_2:+83986707 None:intergenic
CGGCGGCTGAGCAGTTAGGT+TGG 0.531621 7_2:+83987217 None:intergenic
AATTGCAGAGGCAGAGAAGA+TGG 0.533070 7_2:-83987279 Msa1083660:CDS
GCTAAAACCAGTCAACATGC+TGG 0.539656 7_2:+83985626 None:intergenic
GCCTCAGCTGATGTATCATA+GGG 0.543724 7_2:+83985733 None:intergenic
ATGGGAAAGTAAGTCGAAGT+TGG 0.547488 7_2:-83987430 Msa1083660:five_prime_UTR
TGACTCTTATTCCATCATTG+TGG 0.547489 7_2:-83985010 Msa1083660:three_prime_UTR
ACCATGCTAATACTGCTGCC+TGG 0.549143 7_2:-83985161 Msa1083660:three_prime_UTR
CGTTTAAATCCTTTAGTCAG+AGG 0.553357 7_2:-83985230 Msa1083660:three_prime_UTR
ACTTCGACTTACTTTCCCAT+AGG 0.554474 7_2:+83987433 None:intergenic
GACTTACTTTCCCATAGGAG+GGG 0.555773 7_2:+83987438 None:intergenic
AAGGATTTAAACGCCATGGC+AGG 0.561465 7_2:+83985240 None:intergenic
TAGTTTGGGGAGTGAAGACA+TGG 0.562442 7_2:+83985599 None:intergenic
GTTCACTTCACCCCTCCTAT+GGG 0.564229 7_2:-83987448 Msa1083660:five_prime_UTR
GTTTAAATCCTTTAGTCAGA+GGG 0.564950 7_2:-83985229 Msa1083660:three_prime_UTR
TATGTCAAAGTCAATTGTGA+TGG 0.565976 7_2:-83985120 Msa1083660:three_prime_UTR
GAGTTTCTTTGTGTCGGCAA+AGG 0.566077 7_2:-83986674 Msa1083660:intron
CTGTGGTGGTGTGTGTGCTA+CGG 0.586058 7_2:-83985065 Msa1083660:three_prime_UTR
CTAAAACCAGTCAACATGCT+GGG 0.591004 7_2:+83985627 None:intergenic
AGAAGAGAGCACAACACAAG+TGG 0.593219 7_2:-83987492 None:intergenic
CAAAATAATTCTCTGTGATG+GGG 0.597740 7_2:+83986075 None:intergenic
TGCTGCCTGGAGTAACCCTA+AGG 0.606377 7_2:-83985148 Msa1083660:three_prime_UTR
TTCTTTAAAGACACAGACAA+AGG 0.611750 7_2:+83987315 None:intergenic
TCCAGGCAGCAGTATTAGCA+TGG 0.618759 7_2:+83985160 None:intergenic
ACTAAAGGATTTAAACGCCA+TGG 0.620443 7_2:+83985236 None:intergenic
ACAGCACGTGCATCTTCTCA+AGG 0.621543 7_2:-83986340 Msa1083660:intron
TGATACTTTGGATCGAAAAG+CGG 0.622876 7_2:+83987185 None:intergenic
GTTAGGTTGGACTCCGAGGA+CGG 0.622942 7_2:+83987230 None:intergenic
AGTCAATTGTGATGGTTCTG+TGG 0.623540 7_2:-83985112 Msa1083660:three_prime_UTR
TCCGAGGACGGTGTAAGCAG+AGG 0.625114 7_2:+83987242 None:intergenic
CCTGGTATGCTTGAATTACA+CGG 0.626987 7_2:+83987015 None:intergenic
ACAACTGTTTATAGGTCATG+GGG 0.627093 7_2:-83986158 Msa1083660:intron
AAGTCGAAGTTGGACACAGT+TGG 0.629994 7_2:-83987420 Msa1083660:five_prime_UTR
AGCAGTTAGGTTGGACTCCG+AGG 0.631176 7_2:+83987226 None:intergenic
AAAACAAGAACGAATTGCAG+AGG 0.651160 7_2:-83987291 Msa1083660:CDS
ATGAGGTGCTCTTTCCACAC+AGG 0.664251 7_2:+83986390 None:intergenic
ACCCTATGATACATCAGCTG+AGG 0.667271 7_2:-83985734 Msa1083660:CDS
TAAGCAGAGGAAGTGGACAG+AGG 0.671934 7_2:+83987255 None:intergenic
TTACATGTTTCAGAATACTG+AGG 0.676400 7_2:+83985494 None:intergenic
GATTGCTGATGAGACAGTCA+TGG 0.694367 7_2:-83985563 Msa1083660:three_prime_UTR
AAAAGCGGCTTTAATTTCGG+CGG 0.695406 7_2:+83987200 None:intergenic
GAGACAAATGTGAAAGCATG+AGG 0.702751 7_2:+83986373 None:intergenic
TCAGTGCTATCTATAGTTTG+GGG 0.710241 7_2:+83985586 None:intergenic
GATCAAGGCATATACTGTGG+TGG 0.711117 7_2:-83985079 Msa1083660:three_prime_UTR
TGGGATCAAGGCATATACTG+TGG 0.712148 7_2:-83985082 Msa1083660:three_prime_UTR
ACACAGACAAAGGAAAAGTG+CGG 0.720075 7_2:+83987325 None:intergenic
TGTTTGATAACACTTGCAGG+TGG 0.732567 7_2:-83985198 Msa1083660:three_prime_UTR
AGCTTGTTCAAATTCCTGTG+TGG 0.759817 7_2:-83986404 Msa1083660:CDS
AGTTTGGGGAGTGAAGACAT+GGG 0.801612 7_2:+83985600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAAAATAAAAATTGT+AGG + chr7_2:83986326-83986345 None:intergenic 10.0%
!!! ACAATTTTTATTTTTTTACT+TGG - chr7_2:83986326-83986345 Msa1083660:intron 10.0%
!!! TTCTCTTTAATTTATTACTT+AGG - chr7_2:83985233-83985252 Msa1083660:three_prime_UTR 15.0%
!!! ATTTTTATTTTTTTACTTGG+TGG - chr7_2:83986329-83986348 Msa1083660:intron 15.0%
!!! TTTTTATTTTTTTACTTGGT+GGG - chr7_2:83986330-83986349 Msa1083660:intron 15.0%
!! AAAGATAATATATTGACAAA+GGG + chr7_2:83986381-83986400 None:intergenic 15.0%
!! ATCTTTCTTATAAAACTAAA+AGG - chr7_2:83986395-83986414 Msa1083660:CDS 15.0%
!! ATGATAGAAATAGATAAATA+GGG + chr7_2:83986445-83986464 None:intergenic 15.0%
!! TATGATAGAAATAGATAAAT+AGG + chr7_2:83986446-83986465 None:intergenic 15.0%
!!! TATAACATATTATTACCTTT+TGG - chr7_2:83986492-83986511 Msa1083660:intron 15.0%
!! TTAAACTCATCAATGTAAAA+TGG + chr7_2:83985902-83985921 None:intergenic 20.0%
!! TAATGAATTTCTCAAAATGA+AGG + chr7_2:83986048-83986067 None:intergenic 20.0%
!! GAAAGATAATATATTGACAA+AGG + chr7_2:83986382-83986401 None:intergenic 20.0%
!! AAAGGAAATAAGAAATCAAA+TGG + chr7_2:83986554-83986573 None:intergenic 20.0%
!!! CTTATTTTAAGATTTTGCAA+CGG - chr7_2:83986907-83986926 Msa1083660:intron 20.0%
!!! TTTTTATTATAGAAATGACC+AGG + chr7_2:83987468-83987487 None:intergenic 20.0%
! AATGATTGATGTTGATACTT+TGG + chr7_2:83985165-83985184 None:intergenic 25.0%
! TGAATTGAAGAGAATGAAAA+TGG + chr7_2:83985201-83985220 None:intergenic 25.0%
!! TACGTTTCAATAATTTGTGA+TGG + chr7_2:83985485-83985504 None:intergenic 25.0%
! CCGTAAATTTCAAAACAATA+CGG + chr7_2:83985531-83985550 None:intergenic 25.0%
!!! CCGTATTGTTTTGAAATTTA+CGG - chr7_2:83985528-83985547 Msa1083660:three_prime_UTR 25.0%
! ACATAATTTCATGTCATGTA+AGG + chr7_2:83985720-83985739 None:intergenic 25.0%
! ACAATTTAGACCACATATAT+CGG - chr7_2:83985750-83985769 Msa1083660:intron 25.0%
! AATTTCTCAAAATGAAGGAA+GGG + chr7_2:83986043-83986062 None:intergenic 25.0%
! TATCTTCAACAACTGTTTAT+AGG - chr7_2:83986169-83986188 Msa1083660:intron 25.0%
! ATAAATAGGGAAATTAAGCA+TGG + chr7_2:83986432-83986451 None:intergenic 25.0%
! AAACATTGTATGATTCCAAA+AGG + chr7_2:83986510-83986529 None:intergenic 25.0%
! ATACTGAAACATCAACAAAA+AGG + chr7_2:83986572-83986591 None:intergenic 25.0%
!!! GAAAATTTGGTTTTCTTCTT+TGG + chr7_2:83986686-83986705 None:intergenic 25.0%
! GCAGCTCATAAAAAATTTAT+TGG + chr7_2:83986805-83986824 None:intergenic 25.0%
!!! ATTTTTTATGAGCTGCTTAT+AGG - chr7_2:83986809-83986828 Msa1083660:intron 25.0%
! CCAAAGAATGTTTAAATTGA+AGG + chr7_2:83987442-83987461 None:intergenic 25.0%
! CCTTCAATTTAAACATTCTT+TGG - chr7_2:83987439-83987458 Msa1083660:five_prime_UTR 25.0%
! TTCTTTAAAGACACAGACAA+AGG + chr7_2:83985023-83985042 None:intergenic 30.0%
! TTTCATTTTCATCTCTGTTG+AGG + chr7_2:83985278-83985297 None:intergenic 30.0%
GTTAATGAGTTTCTTTGTGT+CGG - chr7_2:83985655-83985674 Msa1083660:CDS 30.0%
GAATTTCTCAAAATGAAGGA+AGG + chr7_2:83986044-83986063 None:intergenic 30.0%
AACAACTGTTTATAGGTCAT+GGG - chr7_2:83986176-83986195 Msa1083660:intron 30.0%
ACATAATGAATGCAACTTCT+CGG + chr7_2:83986238-83986257 None:intergenic 30.0%
CAAAATAATTCTCTGTGATG+GGG + chr7_2:83986263-83986282 None:intergenic 30.0%
CCAAAATAATTCTCTGTGAT+GGG + chr7_2:83986264-83986283 None:intergenic 30.0%
TCCAAAATAATTCTCTGTGA+TGG + chr7_2:83986265-83986284 None:intergenic 30.0%
!!! ATCACAGAGAATTATTTTGG+AGG - chr7_2:83986264-83986283 Msa1083660:intron 30.0%
GTTATTCTCAAACTTAGCTT+TGG + chr7_2:83986651-83986670 None:intergenic 30.0%
TTACATGTTTCAGAATACTG+AGG + chr7_2:83986844-83986863 None:intergenic 30.0%
TGTAAGCTACTTACTACAAT+CGG - chr7_2:83986859-83986878 Msa1083660:CDS 30.0%
!!! TTTTAAGATTTTGCAACGGA+TGG - chr7_2:83986911-83986930 Msa1083660:intron 30.0%
TTCTTTCAGTGAATGAATCA+AGG - chr7_2:83986956-83986975 Msa1083660:intron 30.0%
TCTTTCAGTGAATGAATCAA+GGG - chr7_2:83986957-83986976 Msa1083660:intron 30.0%
AAAAGTCATGTAGTGAGATT+TGG + chr7_2:83987026-83987045 None:intergenic 30.0%
! AATTTTTCGTCATTTCCACA+AGG + chr7_2:83987049-83987068 None:intergenic 30.0%
! ATTTCTAATTTTTCCTGCCA+TGG - chr7_2:83987082-83987101 Msa1083660:CDS 30.0%
GTTTAAATCCTTTAGTCAGA+GGG - chr7_2:83987106-83987125 Msa1083660:intron 30.0%
CTTTGACATAATCTTCCTTA+GGG + chr7_2:83987205-83987224 None:intergenic 30.0%
ACTTTGACATAATCTTCCTT+AGG + chr7_2:83987206-83987225 None:intergenic 30.0%
TATGTCAAAGTCAATTGTGA+TGG - chr7_2:83987215-83987234 Msa1083660:CDS 30.0%
AGATACTCACTACTTTATAG+TGG + chr7_2:83987374-83987393 None:intergenic 30.0%
! GAACACTTGATAGTTATTAC+AGG + chr7_2:83987420-83987439 None:intergenic 30.0%
TTAAACATTCTTTGGATTCC+TGG - chr7_2:83987447-83987466 Msa1083660:five_prime_UTR 30.0%
!! ACAGTTGGTCTTACCATAAT+GGG - chr7_2:83984930-83984949 Msa1083660:three_prime_UTR 35.0%
AAAACAAGAACGAATTGCAG+AGG - chr7_2:83985044-83985063 Msa1083660:three_prime_UTR 35.0%
! TCGAAAAGCGGCTTTAATTT+CGG + chr7_2:83985141-83985160 None:intergenic 35.0%
TGATACTTTGGATCGAAAAG+CGG + chr7_2:83985153-83985172 None:intergenic 35.0%
! TATGATGTGTGGTAGTGAAT+AGG + chr7_2:83985387-83985406 None:intergenic 35.0%
ACTATGCTGTATATGATGTG+TGG + chr7_2:83985398-83985417 None:intergenic 35.0%
! TCTGCAGTAAAAAAGCATGA+AGG + chr7_2:83985445-83985464 None:intergenic 35.0%
! AATTTGTGATGGTGTGTAGT+TGG + chr7_2:83985474-83985493 None:intergenic 35.0%
!!! TGCTGACTTTTCACTTTTCA+GGG - chr7_2:83985582-83985601 Msa1083660:three_prime_UTR 35.0%
TTCACATTTGTCTCTTCAAC+TGG - chr7_2:83985971-83985990 Msa1083660:intron 35.0%
CAACAACTGTTTATAGGTCA+TGG - chr7_2:83986175-83986194 Msa1083660:intron 35.0%
ACAACTGTTTATAGGTCATG+GGG - chr7_2:83986177-83986196 Msa1083660:intron 35.0%
CATAATGAATGCAACTTCTC+GGG + chr7_2:83986237-83986256 None:intergenic 35.0%
! CCCATCACAGAGAATTATTT+TGG - chr7_2:83986261-83986280 Msa1083660:intron 35.0%
!!! TCTTCTTTGGCTTTTGGTAT+CGG + chr7_2:83986673-83986692 None:intergenic 35.0%
!!! TGGTTTTCTTCTTTGGCTTT+TGG + chr7_2:83986679-83986698 None:intergenic 35.0%
! AACATGCTGGGTTGAAAATT+TGG + chr7_2:83986699-83986718 None:intergenic 35.0%
TCAGTGCTATCTATAGTTTG+GGG + chr7_2:83986752-83986771 None:intergenic 35.0%
CTCAGTGCTATCTATAGTTT+GGG + chr7_2:83986753-83986772 None:intergenic 35.0%
TCTCAGTGCTATCTATAGTT+TGG + chr7_2:83986754-83986773 None:intergenic 35.0%
TTTCAGAATACTGAGGTGTA+AGG + chr7_2:83986837-83986856 None:intergenic 35.0%
GTAAGCTACTTACTACAATC+GGG - chr7_2:83986860-83986879 Msa1083660:CDS 35.0%
ACTAAAGGATTTAAACGCCA+TGG + chr7_2:83987102-83987121 None:intergenic 35.0%
CGTTTAAATCCTTTAGTCAG+AGG - chr7_2:83987105-83987124 Msa1083660:intron 35.0%
!! TTTGGTGTTTGGTTTCTCTA+TGG - chr7_2:83987298-83987317 Msa1083660:CDS 35.0%
TGACTCTTATTCCATCATTG+TGG - chr7_2:83987325-83987344 Msa1083660:CDS 35.0%
ACGTAATACAACCACAATGA+TGG + chr7_2:83987339-83987358 None:intergenic 35.0%
! AGTAGTGAGTATCTTTTCAC+AGG - chr7_2:83987380-83987399 Msa1083660:CDS 35.0%
ACTTCGACTTACTTTCCCAT+AGG + chr7_2:83984905-83984924 None:intergenic 40.0%
ATGGGAAAGTAAGTCGAAGT+TGG - chr7_2:83984905-83984924 Msa1083660:three_prime_UTR 40.0%
!! CACAGTTGGTCTTACCATAA+TGG - chr7_2:83984929-83984948 Msa1083660:three_prime_UTR 40.0%
! TTACCATAATGGGATCGTTC+AGG - chr7_2:83984940-83984959 Msa1083660:three_prime_UTR 40.0%
ACACAGACAAAGGAAAAGTG+CGG + chr7_2:83985013-83985032 None:intergenic 40.0%
! AAAAGCGGCTTTAATTTCGG+CGG + chr7_2:83985138-83985157 None:intergenic 40.0%
! TTTTCATCTCTGTTGAGGTC+TGG + chr7_2:83985273-83985292 None:intergenic 40.0%
CCTGGTATGCTTGAATTACA+CGG + chr7_2:83985323-83985342 None:intergenic 40.0%
AGTAAGTACCAAGTAGTACC+TGG + chr7_2:83985341-83985360 None:intergenic 40.0%
CTGAAAAGTGAAAAGTCAGC+AGG + chr7_2:83985583-83985602 None:intergenic 40.0%
!!! CTGCTGACTTTTCACTTTTC+AGG - chr7_2:83985581-83985600 Msa1083660:three_prime_UTR 40.0%
AGATCAAAAGCTTCACACTC+TGG + chr7_2:83985631-83985650 None:intergenic 40.0%
! ATTAAAGGTGTGTCCAGTGT+AGG + chr7_2:83985798-83985817 None:intergenic 40.0%
ACACCTTTAATCTGCAAGTG+TGG - chr7_2:83985807-83985826 Msa1083660:intron 40.0%
TACAATGTCTCAACGTCACT+TGG - chr7_2:83985848-83985867 Msa1083660:intron 40.0%
ACAATGTCTCAACGTCACTT+GGG - chr7_2:83985849-83985868 Msa1083660:intron 40.0%
! AGCTTGTTCAAATTCCTGTG+TGG - chr7_2:83985931-83985950 Msa1083660:intron 40.0%
! GAGACAAATGTGAAAGCATG+AGG + chr7_2:83985965-83985984 None:intergenic 40.0%
!! TTTTGGAGGAGCTACTTAAC+AGG - chr7_2:83986278-83986297 Msa1083660:intron 40.0%
!!! TTTTTTTACTTGGTGGGCTG+TGG - chr7_2:83986336-83986355 Msa1083660:intron 40.0%
CTAAAACCAGTCAACATGCT+GGG + chr7_2:83986711-83986730 None:intergenic 40.0%
! TAAGATTTTGCAACGGATGG+CGG - chr7_2:83986914-83986933 Msa1083660:intron 40.0%
! CACTACATGACTTTTCCTTG+TGG - chr7_2:83987031-83987050 Msa1083660:CDS 40.0%
! CTGTGTTTGATAACACTTGC+AGG - chr7_2:83987134-83987153 Msa1083660:intron 40.0%
! TGTTTGATAACACTTGCAGG+TGG - chr7_2:83987137-83987156 Msa1083660:intron 40.0%
! AGTCAATTGTGATGGTTCTG+TGG - chr7_2:83987223-83987242 Msa1083660:CDS 40.0%
! ATGGTTCTGTGGTTGACTTT+GGG - chr7_2:83987234-83987253 Msa1083660:CDS 40.0%
!! CTACGGATGAATTTGGTGTT+TGG - chr7_2:83987287-83987306 Msa1083660:CDS 40.0%
GCACTCTGTCATCCAGAAAA+TGG - chr7_2:83984865-83984884 Msa1083660:three_prime_UTR 45.0%
! GGGTGAAGTGAACCATTTTC+TGG + chr7_2:83984880-83984899 None:intergenic 45.0%
GACTTACTTTCCCATAGGAG+GGG + chr7_2:83984900-83984919 None:intergenic 45.0%
CGACTTACTTTCCCATAGGA+GGG + chr7_2:83984901-83984920 None:intergenic 45.0%
TCGACTTACTTTCCCATAGG+AGG + chr7_2:83984902-83984921 None:intergenic 45.0%
AAGTCGAAGTTGGACACAGT+TGG - chr7_2:83984915-83984934 Msa1083660:three_prime_UTR 45.0%
CAACCTGAACGATCCCATTA+TGG + chr7_2:83984946-83984965 None:intergenic 45.0%
AATTGCAGAGGCAGAGAAGA+TGG - chr7_2:83985056-83985075 Msa1083660:three_prime_UTR 45.0%
CCGTGTAATTCAAGCATACC+AGG - chr7_2:83985320-83985339 Msa1083660:three_prime_UTR 45.0%
CAAGCATACCAGGTACTACT+TGG - chr7_2:83985330-83985349 Msa1083660:intron 45.0%
TCACACTCTGGTCTGTCAAA+GGG + chr7_2:83985619-83985638 None:intergenic 45.0%
TTCACACTCTGGTCTGTCAA+AGG + chr7_2:83985620-83985639 None:intergenic 45.0%
! GAGTTTCTTTGTGTCGGCAA+AGG - chr7_2:83985661-83985680 Msa1083660:CDS 45.0%
! TTCTTTGTGTCGGCAAAGGT+AGG - chr7_2:83985665-83985684 Msa1083660:CDS 45.0%
TAGACCACATATATCGGTGC+AGG - chr7_2:83985756-83985775 Msa1083660:intron 45.0%
GCTCCACACTTGCAGATTAA+AGG + chr7_2:83985813-83985832 None:intergenic 45.0%
TACCAAGTTCAGTGTGCTGT+TGG - chr7_2:83986205-83986224 Msa1083660:intron 45.0%
ACCCTATGATACATCAGCTG+AGG - chr7_2:83986601-83986620 Msa1083660:intron 45.0%
GCCTCAGCTGATGTATCATA+GGG + chr7_2:83986605-83986624 None:intergenic 45.0%
TGCCTCAGCTGATGTATCAT+AGG + chr7_2:83986606-83986625 None:intergenic 45.0%
TTTCAACCCAGCATGTTGAC+TGG - chr7_2:83986702-83986721 Msa1083660:CDS 45.0%
GCTAAAACCAGTCAACATGC+TGG + chr7_2:83986712-83986731 None:intergenic 45.0%
AGTTTGGGGAGTGAAGACAT+GGG + chr7_2:83986738-83986757 None:intergenic 45.0%
TAGTTTGGGGAGTGAAGACA+TGG + chr7_2:83986739-83986758 None:intergenic 45.0%
GATTGCTGATGAGACAGTCA+TGG - chr7_2:83986772-83986791 Msa1083660:intron 45.0%
! AAGATTTTGCAACGGATGGC+GGG - chr7_2:83986915-83986934 Msa1083660:intron 45.0%
AAGGATTTAAACGCCATGGC+AGG + chr7_2:83987098-83987117 None:intergenic 45.0%
ATCTTCCTTAGGGTTACTCC+AGG + chr7_2:83987195-83987214 None:intergenic 45.0%
! GATGGTTCTGTGGTTGACTT+TGG - chr7_2:83987233-83987252 Msa1083660:CDS 45.0%
!! TGTGGTTGACTTTGGGATCA+AGG - chr7_2:83987241-83987260 Msa1083660:CDS 45.0%
TGGGATCAAGGCATATACTG+TGG - chr7_2:83987253-83987272 Msa1083660:CDS 45.0%
GATCAAGGCATATACTGTGG+TGG - chr7_2:83987256-83987275 Msa1083660:CDS 45.0%
GTGTGTGCTACGGATGAATT+TGG - chr7_2:83987280-83987299 Msa1083660:CDS 45.0%
GTTCACTTCACCCCTCCTAT+GGG - chr7_2:83984887-83984906 Msa1083660:three_prime_UTR 50.0%
TAAGCAGAGGAAGTGGACAG+AGG + chr7_2:83985083-83985102 None:intergenic 50.0%
CATCTCTGTTGAGGTCTGGA+TGG + chr7_2:83985269-83985288 None:intergenic 50.0%
! GTGTCCTGCACCGATATATG+TGG + chr7_2:83985763-83985782 None:intergenic 50.0%
CTGCATGCAATGTCCTACAC+TGG - chr7_2:83985782-83985801 Msa1083660:intron 50.0%
! ATGAGGTGCTCTTTCCACAC+AGG + chr7_2:83985948-83985967 None:intergenic 50.0%
ACAGCACGTGCATCTTCTCA+AGG - chr7_2:83985995-83986014 Msa1083660:intron 50.0%
GTCCAACAGCACACTGAACT+TGG + chr7_2:83986210-83986229 None:intergenic 50.0%
! AGATTTTGCAACGGATGGCG+GGG - chr7_2:83986916-83986935 Msa1083660:intron 50.0%
ACGTGAATGCGTGATACTGC+AGG - chr7_2:83986996-83987015 Msa1083660:intron 50.0%
CAGCTACTCCCTCTGACTAA+AGG + chr7_2:83987117-83987136 None:intergenic 50.0%
ACCATGCTAATACTGCTGCC+TGG - chr7_2:83987174-83987193 Msa1083660:intron 50.0%
TCCAGGCAGCAGTATTAGCA+TGG + chr7_2:83987178-83987197 None:intergenic 50.0%
GGTTCACTTCACCCCTCCTA+TGG - chr7_2:83984886-83984905 Msa1083660:three_prime_UTR 55.0%
GACGGTGTAAGCAGAGGAAG+TGG + chr7_2:83985090-83985109 None:intergenic 55.0%
TCCTCTGCTTACACCGTCCT+CGG - chr7_2:83985092-83985111 Msa1083660:three_prime_UTR 55.0%
!! GTTAGGTTGGACTCCGAGGA+CGG + chr7_2:83985108-83985127 None:intergenic 55.0%
!! AGCAGTTAGGTTGGACTCCG+AGG + chr7_2:83985112-83985131 None:intergenic 55.0%
ATTTCGGCGGCTGAGCAGTT+AGG + chr7_2:83985125-83985144 None:intergenic 55.0%
TGCTGCCTGGAGTAACCCTA+AGG - chr7_2:83987187-83987206 Msa1083660:intron 55.0%
! CTGTGGTGGTGTGTGTGCTA+CGG - chr7_2:83987270-83987289 Msa1083660:CDS 55.0%
TCCGAGGACGGTGTAAGCAG+AGG + chr7_2:83985096-83985115 None:intergenic 60.0%
CGGCGGCTGAGCAGTTAGGT+TGG + chr7_2:83985121-83985140 None:intergenic 65.0%
!! TGCAACGGATGGCGGGGAAG+TGG - chr7_2:83986922-83986941 Msa1083660:intron 65.0%
!! ACGGATGGCGGGGAAGTGGC+AGG - chr7_2:83986926-83986945 Msa1083660:intron 70.0%
!! CGGATGGCGGGGAAGTGGCA+GGG - chr7_2:83986927-83986946 Msa1083660:intron 70.0%
!! GGATGGCGGGGAAGTGGCAG+GGG - chr7_2:83986928-83986947 Msa1083660:intron 70.0%
!! GATGGCGGGGAAGTGGCAGG+GGG - chr7_2:83986929-83986948 Msa1083660:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83984852 83987505 83984852 ID=Msa1083660;Name=Msa1083660
chr7_2 mRNA 83984852 83987505 83984852 ID=Msa1083660-mRNA-1;Parent=Msa1083660;Name=Msa1083660-mRNA-1;_AED=0.33;_eAED=0.33;_QI=96|1|1|1|0.85|0.75|8|617|252
chr7_2 exon 83984852 83985339 83984852 ID=Msa1083660-mRNA-1:exon:22317;Parent=Msa1083660-mRNA-1
chr7_2 exon 83985498 83985768 83985498 ID=Msa1083660-mRNA-1:exon:22316;Parent=Msa1083660-mRNA-1
chr7_2 exon 83986058 83986166 83986058 ID=Msa1083660-mRNA-1:exon:22315;Parent=Msa1083660-mRNA-1
chr7_2 exon 83986341 83986424 83986341 ID=Msa1083660-mRNA-1:exon:22314;Parent=Msa1083660-mRNA-1
chr7_2 exon 83986675 83986754 83986675 ID=Msa1083660-mRNA-1:exon:22313;Parent=Msa1083660-mRNA-1
chr7_2 exon 83986856 83986893 83986856 ID=Msa1083660-mRNA-1:exon:22312;Parent=Msa1083660-mRNA-1
chr7_2 exon 83987016 83987102 83987016 ID=Msa1083660-mRNA-1:exon:22311;Parent=Msa1083660-mRNA-1
chr7_2 exon 83987191 83987505 83987191 ID=Msa1083660-mRNA-1:exon:22310;Parent=Msa1083660-mRNA-1
chr7_2 five_prime_UTR 83987410 83987505 83987410 ID=Msa1083660-mRNA-1:five_prime_utr;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83987191 83987409 83987191 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83987016 83987102 83987016 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83986856 83986893 83986856 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83986675 83986754 83986675 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83986341 83986424 83986341 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83986058 83986166 83986058 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 CDS 83985627 83985768 83985627 ID=Msa1083660-mRNA-1:cds;Parent=Msa1083660-mRNA-1
chr7_2 three_prime_UTR 83985498 83985626 83985498 ID=Msa1083660-mRNA-1:three_prime_utr;Parent=Msa1083660-mRNA-1
chr7_2 three_prime_UTR 83984852 83985339 83984852 ID=Msa1083660-mRNA-1:three_prime_utr;Parent=Msa1083660-mRNA-1
Gene Sequence

>Msa1083660

ATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATGCTATGATTCGCCGTGTAATTCAAGCATACCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTCATGGGGAAGACTACCAAGTTCAGTGTGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAG

Protein sequence

>Msa1083660

MGSFRLFSFNLTTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYTVLGVQPNCSAAEIKAAFRSKVKQFHPDLNRDENETYSDAMIRRVIQAYQILSNYTPSQIIETECLDPFDRPECEAFDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSCIHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDWF*