AlfalfaGEDB | Msa0423690

M. sativa cultivar zhongmu-4 / Msa0423690

KEGG: K21398
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015083 GO:0015318 GO:0015690 GO:0016020 GO:0022857 GO:0030001 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072512 GO:0098660 GO:1902602
PFAM: PF01566.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423690	XP_003602053.1	97.180	532	11	2	1	529	1	531	0.0	1047

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423690	sp\|Q8H4H5\|NRAM5_ORYSJ	66.852	540	160	4	5	529	3	538	0.0	721

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423690	G7J4Z1	97.180	532	11	2	1	529	1	531	0.0	1047

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007570	Msa0423690	-0.806897	6.579618e-50	-8.615850e-47
Msa0014970	Msa0423690	-0.800990	1.111895e-48	-8.615850e-47
Msa0022230	Msa0423690	-0.819935	8.944982e-53	-8.615850e-47
Msa0027030	Msa0423690	-0.807782	4.272750e-50	-8.615850e-47
Msa0027860	Msa0423690	0.800676	1.288610e-48	-8.615850e-47
Msa0028450	Msa0423690	-0.808845	2.535026e-50	-8.615850e-47
Msa0030760	Msa0423690	-0.811326	7.403454e-51	-8.615850e-47
Msa0032990	Msa0423690	-0.811261	7.648947e-51	-8.615850e-47
Msa0033190	Msa0423690	-0.814805	1.278045e-51	-8.615850e-47
Msa0039780	Msa0423690	-0.802216	6.232058e-49	-8.615850e-47

Showing 1 to 10 of 434 entries

Previous1 2 3 4 5…44Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423690	MtrunA17_Chr3g0124991	97.180	532	11	2	1	529	1	531	0.0	1047
Msa0423690	MtrunA17_Chr3g0124971	82.296	514	86	2	20	529	26	538	0.0	827
Msa0423690	MtrunA17_Chr2g0333811	58.674	513	203	4	20	529	31	537	0.0	618
Msa0423690	MtrunA17_Chr3g0134491	42.325	456	238	9	31	478	66	504	1.45e-105	326
Msa0423690	MtrunA17_Chr5g0401611	42.198	455	240	9	31	478	52	490	2.02e-105	325
Msa0423690	MtrunA17_Chr4g0053701	42.017	476	244	10	24	484	39	497	5.81e-104	321
Msa0423690	MtrunA17_Chr8g0347551	38.254	481	267	9	11	478	58	521	7.37e-95	299
Msa0423690	MtrunA17_Chr7g0264231	26.540	422	261	12	33	439	31	418	5.01e-32	131
Msa0423690	MtrunA17_Chr2g0309271	27.100	369	242	11	79	439	6	355	1.65e-28	117

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423690	AT1G15960.1	59.454	513	188	6	22	529	21	518	0.0	614
Msa0423690	AT1G80830.1	59.400	500	197	2	26	525	38	531	0.0	607
Msa0423690	AT1G80830.2	59.400	500	197	2	26	525	38	531	0.0	607
Msa0423690	AT1G47240.1	40.725	469	253	9	18	478	52	503	2.71e-105	325
Msa0423690	AT5G67330.1	42.060	466	247	10	26	484	44	493	5.19e-105	324
Msa0423690	AT2G23150.1	43.230	421	222	7	31	443	53	464	7.66e-102	316
Msa0423690	AT4G18790.1	39.130	483	265	10	8	478	40	505	3.78e-99	310
Msa0423690	AT5G03280.1	27.273	418	274	9	32	439	16	413	3.46e-34	138

Showing 1 to 8 of 8 entries

Previous1Next

Find 123 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGATGCGATGATGATA+AGG	0.436840	3_2:+73608012	None:intergenic
AAACTTAAGGAGTGGAATTA+AGG	0.328480	3_2:+73607869	None:intergenic
AAAGTACCTAATTCTGTGAG+AGG	0.602100	3_2:-73608831	Msa0423690:CDS
AAATATAAATCACCACCTTC+AGG	0.395323	3_2:+73610396	None:intergenic
AACAATCCTAGTATTTGTAA+TGG	0.508316	3_2:-73609187	Msa0423690:CDS
AACAGAACTCCTGCCCATAA+TGG	0.347335	3_2:+73610212	None:intergenic
AACAGCAAGACTAGGTGCTA+TGG	0.561217	3_2:+73608067	None:intergenic
AACATCCTCAAATCATGACG+AGG	0.727935	3_2:-73611653	Msa0423690:intron
AACCTTGAGAAGGAAAGAAG+CGG	0.643227	3_2:+73608472	None:intergenic
AACTTGTATGTAGAATGTGT+TGG	0.595481	3_2:-73608324	Msa0423690:intron

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAACAACATCAAGTTA+TGG	-	chr3_2:73607427-73607446	Msa0423690:CDS	30.0%
CATTGATAGACACAAAAATC+TGG	-	chr3_2:73607623-73607642	Msa0423690:CDS	30.0%
AGAAAAACGTGAAACCAAAA+AGG	+	chr3_2:73607732-73607751	None:intergenic	30.0%
ACGGAATGTGATATACTTTA+GGG	+	chr3_2:73607866-73607885	None:intergenic	30.0%
AATATTGGGGACTAAATTGA+CGG	+	chr3_2:73607885-73607904	None:intergenic	30.0%
TTCTATGTGTTTGTGCTTAT+TGG	-	chr3_2:73607985-73608004	Msa0423690:intron	30.0%
AACAAAATGTTAGAAGAAGG+AGG	+	chr3_2:73608164-73608183	None:intergenic	30.0%
CGTCCTAAATAGAATTCATA+AGG	-	chr3_2:73608354-73608373	Msa0423690:intron	30.0%
GTTTGATCTAATAGTTGCTA+TGG	-	chr3_2:73608428-73608447	Msa0423690:intron	30.0%
CAACTTTACATACTTCTGAA+AGG	+	chr3_2:73608620-73608639	None:intergenic	30.0%

Showing 1 to 10 of 602 entries

Previous1 2 3 4 5…61Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	73607363	73611763	73607363	ID=Msa0423690;Name=Msa0423690
chr3_2	mRNA	73607363	73611763	73607363	ID=Msa0423690-mRNA-1;Parent=Msa0423690;Name=Msa0423690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=35\|0.91\|0.92\|1\|1\|1\|13\|31\|529
chr3_2	exon	73607363	73607726	73607363	ID=Msa0423690-mRNA-1:exon:18437;Parent=Msa0423690-mRNA-1
chr3_2	exon	73607824	73607919	73607824	ID=Msa0423690-mRNA-1:exon:18436;Parent=Msa0423690-mRNA-1
chr3_2	exon	73608016	73608147	73608016	ID=Msa0423690-mRNA-1:exon:18435;Parent=Msa0423690-mRNA-1
chr3_2	exon	73608229	73608333	73608229	ID=Msa0423690-mRNA-1:exon:18434;Parent=Msa0423690-mRNA-1
chr3_2	exon	73608475	73608648	73608475	ID=Msa0423690-mRNA-1:exon:18433;Parent=Msa0423690-mRNA-1
chr3_2	exon	73608824	73608893	73608824	ID=Msa0423690-mRNA-1:exon:18432;Parent=Msa0423690-mRNA-1
chr3_2	exon	73609051	73609232	73609051	ID=Msa0423690-mRNA-1:exon:18431;Parent=Msa0423690-mRNA-1
chr3_2	exon	73610166	73610275	73610166	ID=Msa0423690-mRNA-1:exon:18430;Parent=Msa0423690-mRNA-1
chr3_2	exon	73610409	73610516	73610409	ID=Msa0423690-mRNA-1:exon:18429;Parent=Msa0423690-mRNA-1
chr3_2	exon	73610816	73610894	73610816	ID=Msa0423690-mRNA-1:exon:18428;Parent=Msa0423690-mRNA-1
chr3_2	exon	73611049	73611089	73611049	ID=Msa0423690-mRNA-1:exon:18427;Parent=Msa0423690-mRNA-1
chr3_2	exon	73611410	73611494	73611410	ID=Msa0423690-mRNA-1:exon:18426;Parent=Msa0423690-mRNA-1
chr3_2	exon	73611654	73611763	73611654	ID=Msa0423690-mRNA-1:exon:18425;Parent=Msa0423690-mRNA-1
chr3_2	five_prime_UTR	73611729	73611763	73611729	ID=Msa0423690-mRNA-1:five_prime_utr;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73611654	73611728	73611654	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73611410	73611494	73611410	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73611049	73611089	73611049	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73610816	73610894	73610816	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73610409	73610516	73610409	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73610166	73610275	73610166	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73609051	73609232	73609051	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73608824	73608893	73608824	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73608475	73608648	73608475	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73608229	73608333	73608229	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73608016	73608147	73608016	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73607824	73607919	73607824	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	CDS	73607394	73607726	73607394	ID=Msa0423690-mRNA-1:cds;Parent=Msa0423690-mRNA-1
chr3_2	three_prime_UTR	73607363	73607393	73607363	ID=Msa0423690-mRNA-1:three_prime_utr;Parent=Msa0423690-mRNA-1

Gene Sequence

>Msa0423690

ATGGCAGACTTGTTACAGCAGCAGCAGCAACAACAACAACATCAAGTTATGGAAACATCCTCAAATCATGACGAGACACAAAAATCTGGATGGAGAAAGTTTTTGCCATATATAGGCCCTGGTTTTCTTGTTTCTTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATACGAGTTGTTGTGGTTGGTACTTATTGGACTCATATTCGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTAACCACCGGCAAACACCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGCTTATGGTTATTAGCAGAGGTTGCTGTCATAGCAGCTGACATACCTGAAGGTGTGATTGGGACAGCCTTTGCTCTCAACATACTATTCAACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTTCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCTGCATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCCAAACTGGCTGGTGAAGGAGCCGTAGCCGATGCTATTGCCCTTTTGGGGGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTTGTGCTATCTAGAAAAGTACCTAATTCTGTGAGAGGCATCAATGAAGCATGTAGATATTTCCTCTATGAGAGTGGATTCGCTTTGTTTGTGGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACTGTCTGCTCTGCCAATGACCTATCTGGAGACAATGTTGAACGCTGCAATGATCTCACCCTTAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACTTATGCAGGACAGTACATCATGCAGGGTTTCTTAGACATAAGGATGAAAAGATGGAAAAGGAACTTGATGACTAGATGCATTGCCATAGCACCTAGTCTTGCTGTTGCCATCATTGGTGGTTCTTCTGGCTCTAGTCGCCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCCTTAATTCCACTCCTTAAGTTTAGCAGCAGCACAACCAAAATGGGACCTCACAAGAATTCTATTATTGTCATTACAATCTCATGGATACTAGGTTTTGGAATCATTAGTATCAATGTGTACTACCTCAGTACTGCCTTTGTGAAGTGGATAATACATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAGTTTATATTGCCTCAGTTATCTACCTTACCTTCAGAAAAGACACTGTTGAGACGTTCATCGAGACGAAAAATGATACAGTAATGCAAAACCAAGTGGAAAAAGGAATTGTGGATAATGGTCAGTTAGAGTTGAGCCATGTTCCTTATAGAGAAGATTTAGCTGATATCCCGCTACCAGAATAA

Protein sequence

>Msa0423690

MADLLQQQQQQQQHQVMETSSNHDETQKSGWRKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEGVIGTAFALNILFNIPLWAGVLLTGFSTLLLLSLQRFGVRKLELLITILVFVMAACFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHNLFLHSALVLSRKVPNSVRGINEACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIIVITISWILGFGIISINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAVYIASVIYLTFRKDTVETFIETKNDTVMQNQVEKGIVDNGQLELSHVPYREDLADIPLPE*