AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470440 MtrunA17_Chr3g0124991 96.992 532 12 2 1 529 1 531 0.0 1045
Msa0470440 MtrunA17_Chr3g0124971 82.296 514 86 2 20 529 26 538 0.0 827
Msa0470440 MtrunA17_Chr2g0333811 58.674 513 203 4 20 529 31 537 0.0 617
Msa0470440 MtrunA17_Chr3g0134491 42.325 456 238 9 31 478 66 504 1.51e-105 326
Msa0470440 MtrunA17_Chr4g0053701 42.227 476 243 10 24 484 39 497 4.82e-105 324
Msa0470440 MtrunA17_Chr5g0401611 41.978 455 241 9 31 478 52 490 1.08e-104 323
Msa0470440 MtrunA17_Chr8g0347551 38.254 481 267 9 11 478 58 521 7.69e-95 299
Msa0470440 MtrunA17_Chr7g0264231 26.540 422 261 12 33 439 31 418 6.52e-32 131
Msa0470440 MtrunA17_Chr2g0309271 27.100 369 242 11 79 439 6 355 1.98e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470440 AT1G15960.1 59.454 513 188 6 22 529 21 518 0.0 612
Msa0470440 AT1G80830.1 59.400 500 197 2 26 525 38 531 0.0 606
Msa0470440 AT1G80830.2 59.400 500 197 2 26 525 38 531 0.0 606
Msa0470440 AT1G47240.1 40.725 469 253 9 18 478 52 503 3.02e-105 325
Msa0470440 AT5G67330.1 42.060 466 247 10 26 484 44 493 2.28e-104 323
Msa0470440 AT2G23150.1 43.230 421 222 7 31 443 53 464 1.08e-101 316
Msa0470440 AT4G18790.1 38.923 483 266 10 8 478 40 505 2.10e-98 308
Msa0470440 AT5G03280.1 27.512 418 273 9 32 439 16 413 3.78e-35 141

Find 124 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCATTGGTGGTTCTTC+TGG 0.206134 3_3:-72505988 Msa0470440:CDS
AGCCGATGCTATTGCCCTTT+TGG 0.215573 3_3:-72507011 Msa0470440:CDS
TTGCTGTGGTTGGTACTTAT+TGG 0.217432 3_3:-72508816 Msa0470440:CDS
TACTATTCAACATCCCATTA+TGG 0.239108 3_3:-72508170 Msa0470440:CDS
AAGCAATACTTCACAAATAA+TGG 0.285217 3_3:+72508403 None:intergenic
TAGCAGCAGCACAACCAAAA+TGG 0.288834 3_3:-72505791 Msa0470440:CDS
AAGGAAAGAAGCGGAGTTAA+GGG 0.309653 3_3:+72506425 None:intergenic
CGCGCTTATAATTCAGTCAT+TGG 0.312613 3_3:-72508784 Msa0470440:CDS
TACCCTTGGATCCTTTATTC+TGG 0.317009 3_3:+72505324 None:intergenic
AAGCAGTGCTATGGCATAAA+TGG 0.318535 3_3:+72506230 None:intergenic
ATTCTTGTGAGGTCCCATTT+TGG 0.321502 3_3:+72505777 None:intergenic
TATTTGTGAAGTATTGCTTA+TGG 0.321986 3_3:-72508399 Msa0470440:CDS
TTGATGCCTCTCACAGAATT+AGG 0.325074 3_3:+72506769 None:intergenic
CCCAGCTTCTGGTGTACTTA+AGG 0.325720 3_3:-72507071 Msa0470440:CDS
GGCTCCTTCACCAGCCAGTT+TGG 0.327974 3_3:+72507036 None:intergenic
AAACTTAAGGAGTGGAATTA+AGG 0.328480 3_3:+72505813 None:intergenic
GAGAGTTACTTACTGTTTCC+AGG 0.331655 3_3:+72509357 None:intergenic
CAGTCATTGGCTGCAAATCT+TGG 0.336265 3_3:-72508771 Msa0470440:CDS
ATGCAAAACCAAGTGGAAAA+AGG 0.336749 3_3:-72505417 Msa0470440:CDS
TCAGCTAAATCTTCTCTATA+AGG 0.339264 3_3:+72505357 None:intergenic
AGTCTTGCTGTTGCCATCAT+TGG 0.340050 3_3:-72506000 Msa0470440:CDS
GAAGGAAAGAAGCGGAGTTA+AGG 0.344893 3_3:+72506424 None:intergenic
AACAGAACTCCTGCCCATAA+TGG 0.347335 3_3:+72508156 None:intergenic
TGCTCTGCCAATGACCTATC+TGG 0.350602 3_3:-72506477 Msa0470440:CDS
AGAAAACCAGGGCCTATATA+TGG 0.355996 3_3:+72509402 None:intergenic
ATCTCATGGATACTAGGTTT+TGG 0.367043 3_3:-72505639 Msa0470440:CDS
CCAGCTTCTGGTGTACTTAA+GGG 0.377926 3_3:-72507070 Msa0470440:CDS
GCAATATAAACTGCCATTAG+AGG 0.379665 3_3:+72505510 None:intergenic
GCTCCTTCACCAGCCAGTTT+GGG 0.383361 3_3:+72507037 None:intergenic
ATGAACACATTTGCCACCTT+TGG 0.395316 3_3:+72505549 None:intergenic
AAATATAAATCACCACCTTC+AGG 0.395323 3_3:+72508340 None:intergenic
ACAGAACTCCTGCCCATAAT+GGG 0.402615 3_3:+72508157 None:intergenic
GATTATAGTGTTTCCTCTAA+TGG 0.404806 3_3:-72505523 Msa0470440:CDS
TCCTTGGCTTACCTTGATCC+TGG 0.418033 3_3:-72509375 Msa0470440:CDS
ATATCCCGCTACCAGAATAA+AGG 0.421458 3_3:-72505335 Msa0470440:exon
AAGGTGGCAAATGTGTTCAT+TGG 0.426629 3_3:-72505546 Msa0470440:CDS
AGAAAGTATACGGCATGATA+AGG 0.426875 3_3:+72506984 None:intergenic
ATTACAATCTCATGGATACT+AGG 0.429574 3_3:-72505645 Msa0470440:CDS
ACTATTCAACATCCCATTAT+GGG 0.435828 3_3:-72508169 Msa0470440:CDS
AAACCGATGCGATGATGATA+AGG 0.436840 3_3:+72505956 None:intergenic
ACTTACTGTTTCCAGGATCA+AGG 0.437998 3_3:+72509364 None:intergenic
TTGTGCTGCTGCTAAACTTA+AGG 0.438674 3_3:+72505800 None:intergenic
AGGTGGCAAATGTGTTCATT+GGG 0.438921 3_3:-72505545 Msa0470440:CDS
TATAGGGTTTCTTAGACATA+AGG 0.440552 3_3:-72506074 Msa0470440:intron
CTCCGCTTCTTTCCTTCTCA+AGG 0.452971 3_3:-72506418 Msa0470440:intron
ATGCGTTTGATTCATACCCT+TGG 0.453347 3_3:+72505310 None:intergenic
AGCAGCAGCACAACCAAAAT+GGG 0.460120 3_3:-72505790 Msa0470440:CDS
TGGGCAGGAGTTCTGTTGAC+TGG 0.463210 3_3:-72508150 Msa0470440:CDS
AAGTACCTCGTCATGATTTG+AGG 0.466681 3_3:+72509608 None:intergenic
CCCTTAAGTACACCAGAAGC+TGG 0.474697 3_3:+72507070 None:intergenic
GAAAGTATACGGCATGATAA+GGG 0.476396 3_3:+72506985 None:intergenic
GCCATAGCACTGCTTGCCTC+AGG 0.483626 3_3:-72506222 Msa0470440:CDS
CTTGCTGTTGCCATCATTGG+TGG 0.486524 3_3:-72505997 Msa0470440:CDS
GCCAGAAGAACCACCAATGA+TGG 0.490481 3_3:+72505987 None:intergenic
TAGACATAAGGATGAAAAGA+TGG 0.495109 3_3:-72506062 Msa0470440:CDS
GAGTGGATTCGCTTTGTTTG+TGG 0.496012 3_3:-72506544 Msa0470440:CDS
GGGAATGTTTGTGCCCAAAC+TGG 0.496192 3_3:-72507050 Msa0470440:CDS
TAAGGATGAAAAGATGGAAA+AGG 0.497031 3_3:-72506056 Msa0470440:CDS
CCCCAAAAGGGCAATAGCAT+CGG 0.499242 3_3:+72507009 None:intergenic
TTGTATTCAGTTGCTGTGGT+TGG 0.501745 3_3:-72508826 Msa0470440:intron
TGGATCCTTTATTCTGGTAG+CGG 0.502929 3_3:+72505330 None:intergenic
ACAACAACAACATCAAGTTA+TGG 0.503391 3_3:-72509637 Msa0470440:CDS
AACAATCCTAGTATTTGTAA+TGG 0.508316 3_3:-72507131 Msa0470440:CDS
GTGGAAACTGATTTGCAAGC+TGG 0.509805 3_3:-72509012 Msa0470440:CDS
GGATCCTTTATTCTGGTAGC+GGG 0.510528 3_3:+72505331 None:intergenic
TGCAGGTCATTACAATCTCA+TGG 0.512529 3_3:-72505653 Msa0470440:intron
GCAAATCTTGGCGTAACCAC+TGG 0.523154 3_3:-72508759 Msa0470440:intron
TCCTGAGGCAAGCAGTGCTA+TGG 0.526104 3_3:+72506221 None:intergenic
CCTTAAGTACACCAGAAGCT+GGG 0.527484 3_3:+72507071 None:intergenic
TGTTGCAATGATTTCTGTGT+CGG 0.531965 3_3:-72506508 Msa0470440:CDS
ACTTGATTGTGACAGTGATT+GGG 0.532187 3_3:-72508212 Msa0470440:intron
GTTGCAATGATTTCTGTGTC+GGG 0.533159 3_3:-72506507 Msa0470440:CDS
GCCAAGGAAACAAGAAAACC+AGG 0.535144 3_3:+72509390 None:intergenic
ATTGTCTCCAGATAGGTCAT+TGG 0.535156 3_3:+72506470 None:intergenic
TCAGTACTGCCTTTGTGAAG+TGG 0.535986 3_3:-72505590 Msa0470440:CDS
ACTTGTATGTAGAATGTGTT+GGG 0.538453 3_3:-72506267 Msa0470440:intron
CAACTTTACATACTTCTGAA+AGG 0.539753 3_3:+72508431 None:intergenic
TTCAACATCCCATTATGGGC+AGG 0.543459 3_3:-72508165 Msa0470440:CDS
ACCATCACAGGAACTTATGC+AGG 0.551377 3_3:-72506189 Msa0470440:CDS
GTTCAACATTGTCTCCAGAT+AGG 0.551581 3_3:+72506463 None:intergenic
TTAAATTAGGAACCTTGAGA+AGG 0.552918 3_3:+72506406 None:intergenic
ATGTTTGTGCCCAAACTGGC+TGG 0.553195 3_3:-72507046 Msa0470440:CDS
AACAGCAAGACTAGGTGCTA+TGG 0.561217 3_3:+72506011 None:intergenic
AAGCGAATCCACTCTCATAG+AGG 0.564674 3_3:+72506553 None:intergenic
ATGCAGCCATTACAAATACT+AGG 0.564740 3_3:+72507125 None:intergenic
TTTGAGTCTGCAGAGGTTTG+GGG 0.565267 3_3:-72508109 Msa0470440:intron
AAGGGCAATAGCATCGGCTA+CGG 0.568499 3_3:+72507015 None:intergenic
AGGAGTGGAATTAAGGCGAA+TGG 0.571377 3_3:+72505820 None:intergenic
GGACAAAGTTCTACCATCAC+AGG 0.573167 3_3:-72506201 Msa0470440:CDS
CTACCAGAATAAAGGATCCA+AGG 0.580972 3_3:-72505327 Msa0470440:exon
CTTAAGTACACCAGAAGCTG+GGG 0.583089 3_3:+72507072 None:intergenic
TGCAGGACAGTACATCATGC+AGG 0.588205 3_3:-72506172 Msa0470440:intron
GTGCCCAAACTGGCTGGTGA+AGG 0.595265 3_3:-72507040 Msa0470440:CDS
AACTTGTATGTAGAATGTGT+TGG 0.595481 3_3:-72506268 Msa0470440:intron
GTAGATCACAGAAAGAGTAA+TGG 0.598363 3_3:-72509685 Msa0470440:exon
AGATATTTCCTCTATGAGAG+TGG 0.600417 3_3:-72506561 Msa0470440:CDS
AAAGTACCTAATTCTGTGAG+AGG 0.602100 3_3:-72506775 Msa0470440:CDS
TCCAGGATCAAGGTAAGCCA+AGG 0.603314 3_3:+72509374 None:intergenic
TCGCCTTATCATCATCGCAT+CGG 0.604941 3_3:-72505959 Msa0470440:intron
ATGATGGCAACAGCAAGACT+AGG 0.605747 3_3:+72506003 None:intergenic
GTTGTTGTATTCAGTTGCTG+TGG 0.606399 3_3:-72508830 Msa0470440:intron
TACCAGAATAAAGGATCCAA+GGG 0.615359 3_3:-72505326 Msa0470440:exon
ACATAGTAGTCTACCAAAGG+TGG 0.621719 3_3:-72505562 Msa0470440:CDS
TCCTGCATAAGTTCCTGTGA+TGG 0.622524 3_3:+72506188 None:intergenic
TACAGTAATGCAAAACCAAG+TGG 0.623131 3_3:-72505424 Msa0470440:CDS
AATCTTCTCTATAAGGAACA+TGG 0.634971 3_3:+72505364 None:intergenic
AATACATAGTAGTCTACCAA+AGG 0.639513 3_3:-72505565 Msa0470440:CDS
AACCTTGAGAAGGAAAGAAG+CGG 0.643227 3_3:+72506416 None:intergenic
ATAGCACAAGAGCAGAGTGG+AGG 0.661177 3_3:+72506803 None:intergenic
ATAGCAGCTGACATACCTGA+AGG 0.665156 3_3:-72508355 Msa0470440:CDS
TGGAGCTAACCACGGATACG+AGG 0.667237 3_3:-72508992 Msa0470440:intron
CCAAGGAAACAAGAAAACCA+GGG 0.671441 3_3:+72509391 None:intergenic
CTGCTGCTAAACTTAAGGAG+TGG 0.674326 3_3:+72505805 None:intergenic
TAGATAGCACAAGAGCAGAG+TGG 0.681480 3_3:+72506800 None:intergenic
GAATAGTATGTTGAGAGCAA+AGG 0.682866 3_3:+72508185 None:intergenic
TTGCAAGCTGGAGCTAACCA+CGG 0.687380 3_3:-72509000 Msa0470440:CDS
GCAGCTGACATACCTGAAGG+TGG 0.689194 3_3:-72508352 Msa0470440:intron
ACAATAATAGAATTCTTGTG+AGG 0.689916 3_3:+72505766 None:intergenic
GAAGGTAAGGTAGATAACTG+AGG 0.700238 3_3:+72505488 None:intergenic
TTAAGTACACCAGAAGCTGG+GGG 0.708850 3_3:+72507073 None:intergenic
ATGTATTATCCACTTCACAA+AGG 0.714900 3_3:+72505581 None:intergenic
GATGGTAGAACTTTGTCCTG+AGG 0.715483 3_3:+72506206 None:intergenic
AACATCCTCAAATCATGACG+AGG 0.727935 3_3:-72509613 Msa0470440:intron
ACTTCACAAAGGCAGTACTG+AGG 0.732634 3_3:+72505592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTTATATAGTTTAG+GGG + chr3_3:72505752-72505771 None:intergenic 10.0%
!! CATTATATTTATATAGTTTA+GGG + chr3_3:72505753-72505772 None:intergenic 10.0%
!! TCATTATATTTATATAGTTT+AGG + chr3_3:72505754-72505773 None:intergenic 10.0%
!! TATTATATTTACATAGTTTA+TGG - chr3_3:72505881-72505900 Msa0470440:intron 10.0%
!! AACTTAAATTTCTTATTATA+AGG + chr3_3:72506472-72506491 None:intergenic 10.0%
!!! AAATTTAAGTTATAAATGAA+AGG - chr3_3:72506481-72506500 Msa0470440:CDS 10.0%
!! TTGAAATTCAAAATATAATT+TGG + chr3_3:72507567-72507586 None:intergenic 10.0%
!!! CATTTTTATAACAAAATGTT+AGG + chr3_3:72506133-72506152 None:intergenic 15.0%
!!! TTTTATTATTTATATTTGGC+AGG - chr3_3:72506548-72506567 Msa0470440:CDS 15.0%
!! AATTCAAAATATAATTTGGT+AGG + chr3_3:72507563-72507582 None:intergenic 15.0%
!! TCAAAATTACATAAATTGTA+GGG + chr3_3:72507657-72507676 None:intergenic 15.0%
!! TTCAAAATTACATAAATTGT+AGG + chr3_3:72507658-72507677 None:intergenic 15.0%
!! GAAATTAATAAATTTAGCTA+TGG - chr3_3:72508276-72508295 Msa0470440:intron 15.0%
!! GAAAACTTGAATAAATTAGA+AGG + chr3_3:72505446-72505465 None:intergenic 20.0%
!!! TCTTGTATATATACATGTTT+TGG - chr3_3:72505469-72505488 Msa0470440:CDS 20.0%
!! TACTATTGTTAAAAGAAACT+AGG + chr3_3:72505514-72505533 None:intergenic 20.0%
!!! TTGAATTAGTTTGATTGAAA+AGG + chr3_3:72506722-72506741 None:intergenic 20.0%
!! TACATAAAGATAGTAATAGT+GGG + chr3_3:72507233-72507252 None:intergenic 20.0%
!! TTACATAAAGATAGTAATAG+TGG + chr3_3:72507234-72507253 None:intergenic 20.0%
!!! ATCCTTGATTTTTATTTGAA+TGG - chr3_3:72507325-72507344 Msa0470440:intron 20.0%
!! CAAAATTACATAAATTGTAG+GGG + chr3_3:72507656-72507675 None:intergenic 20.0%
!! TGTAACATATGTAATCTTAA+GGG + chr3_3:72507816-72507835 None:intergenic 20.0%
!! ATGTAACATATGTAATCTTA+AGG + chr3_3:72507817-72507836 None:intergenic 20.0%
!!! ATATAGGAAAAGAAAGTATA+CGG + chr3_3:72508037-72508056 None:intergenic 20.0%
!! AAATTTATTAATTTCCTGAG+TGG + chr3_3:72508271-72508290 None:intergenic 20.0%
!! TACTAGTAGTGAATTAAATT+AGG + chr3_3:72508618-72508637 None:intergenic 20.0%
!! TAGTATATAATAAGTTGCTA+TGG - chr3_3:72508633-72508652 Msa0470440:intron 20.0%
!! TTTACTGAATTTAGATTGTT+TGG - chr3_3:72508904-72508923 Msa0470440:intron 20.0%
!! AGAAAGTTTTTGCCATATAT+AGG - chr3_3:72505594-72505613 Msa0470440:CDS 25.0%
! ATGGAATGTGATATACTTTA+GGG + chr3_3:72505793-72505812 None:intergenic 25.0%
! TGATGAATGCTATATGATTT+AGG - chr3_3:72505851-72505870 Msa0470440:intron 25.0%
! GATGAATGCTATATGATTTA+GGG - chr3_3:72505852-72505871 Msa0470440:intron 25.0%
! TGATATTTCACAATTCATAG+TGG - chr3_3:72505977-72505996 Msa0470440:CDS 25.0%
! TATAACAAAATGTTAGGAGA+AGG + chr3_3:72506127-72506146 None:intergenic 25.0%
!!! AGTAAGTTGATGATTTACTT+GGG + chr3_3:72506340-72506359 None:intergenic 25.0%
!!! TAGTAAGTTGATGATTTACT+TGG + chr3_3:72506341-72506360 None:intergenic 25.0%
! AAGCAATACTTCACAAATAA+TGG + chr3_3:72506608-72506627 None:intergenic 25.0%
!!! TATTTGTGAAGTATTGCTTA+TGG - chr3_3:72506609-72506628 Msa0470440:intron 25.0%
! AAAAGGACAAAAATACAAGA+CGG + chr3_3:72506705-72506724 None:intergenic 25.0%
!! CTTTTAGATTTCATTTGTCA+TGG - chr3_3:72507027-72507046 Msa0470440:CDS 25.0%
!!! TTTTTTTAATCTTAACCCTC+CGG + chr3_3:72507178-72507197 None:intergenic 25.0%
! TGCCATTCAAATAAAAATCA+AGG + chr3_3:72507330-72507349 None:intergenic 25.0%
! TTAAAGTAGTAAAAAGTCCA+GGG + chr3_3:72507387-72507406 None:intergenic 25.0%
! ATTAAAGTAGTAAAAAGTCC+AGG + chr3_3:72507388-72507407 None:intergenic 25.0%
! TCAAAATATAATTTGGTAGG+AGG + chr3_3:72507560-72507579 None:intergenic 25.0%
! AACAATCCTAGTATTTGTAA+TGG - chr3_3:72507877-72507896 Msa0470440:intron 25.0%
!!! TAATGATGGACAAGTTATAT+AGG + chr3_3:72508053-72508072 None:intergenic 25.0%
!! TACTGTATGATATAAGCTTT+TGG + chr3_3:72508124-72508143 None:intergenic 25.0%
! TAGAAGTTAAATGTGCAATT+AGG + chr3_3:72508341-72508360 None:intergenic 25.0%
!! TTTAACTTCTATGTAGACAT+TGG - chr3_3:72508350-72508369 Msa0470440:intron 25.0%
!! CTATTTAACGATTTTGTTGA+AGG - chr3_3:72508880-72508899 Msa0470440:intron 25.0%
! ACAATAATAGAATTCTTGTG+AGG + chr3_3:72509245-72509264 None:intergenic 25.0%
ACAACAACAACATCAAGTTA+TGG - chr3_3:72505371-72505390 Msa0470440:CDS 30.0%
CATTGATAGACACAAAAATC+TGG - chr3_3:72505567-72505586 Msa0470440:CDS 30.0%
AGAAAAACGTGAAACCAAAA+GGG + chr3_3:72505676-72505695 None:intergenic 30.0%
! TACTTTAGGGACAAAATTGA+CGG + chr3_3:72505780-72505799 None:intergenic 30.0%
GATGGAATGTGATATACTTT+AGG + chr3_3:72505794-72505813 None:intergenic 30.0%
AATATTGGGGACTAAATTGA+TGG + chr3_3:72505812-72505831 None:intergenic 30.0%
!!! TCCCCAATATTTTAATAGCA+GGG - chr3_3:72505821-72505840 Msa0470440:CDS 30.0%
TCCCTGCTATTAAAATATTG+GGG + chr3_3:72505825-72505844 None:intergenic 30.0%
GTCCCTGCTATTAAAATATT+GGG + chr3_3:72505826-72505845 None:intergenic 30.0%
AGTCCCTGCTATTAAAATAT+TGG + chr3_3:72505827-72505846 None:intergenic 30.0%
!! TTATTCCTTCAGACTTGTTA+AGG + chr3_3:72506059-72506078 None:intergenic 30.0%
AGTCTGAAGGAATAATAAGA+AGG - chr3_3:72506064-72506083 Msa0470440:CDS 30.0%
AATAATAAGAAGGAAGTCCA+GGG - chr3_3:72506074-72506093 Msa0470440:intron 30.0%
! TTTTTCTAAATACTCACCAG+TGG + chr3_3:72506268-72506287 None:intergenic 30.0%
TTAGATCAAACTGATTACAC+AGG + chr3_3:72506379-72506398 None:intergenic 30.0%
GTTTGATCTAATAGTTGCTA+TGG - chr3_3:72506388-72506407 Msa0470440:intron 30.0%
CAACTTTACATACTTCTGAA+AGG + chr3_3:72506580-72506599 None:intergenic 30.0%
AAATATAAATCACCACCTTC+AGG + chr3_3:72506671-72506690 None:intergenic 30.0%
TACTATTCAACATCCCATTA+TGG - chr3_3:72506838-72506857 Msa0470440:intron 30.0%
ACTATTCAACATCCCATTAT+GGG - chr3_3:72506839-72506858 Msa0470440:intron 30.0%
AGAAGAAAATGTGGATTTCA+TGG - chr3_3:72507683-72507702 Msa0470440:intron 30.0%
CATATGTAATCTTAAGGGTA+AGG + chr3_3:72507811-72507830 None:intergenic 30.0%
!!! TACATGTACCTTTTTTGTAC+AGG - chr3_3:72507832-72507851 Msa0470440:intron 30.0%
TTAAATTAGGAACCTTGAGA+AGG + chr3_3:72508605-72508624 None:intergenic 30.0%
AGTGCATGTGAGATATAATT+TGG + chr3_3:72508703-72508722 None:intergenic 30.0%
AACTTGTATGTAGAATGTGT+TGG - chr3_3:72508740-72508759 Msa0470440:intron 30.0%
ACTTGTATGTAGAATGTGTT+GGG - chr3_3:72508741-72508760 Msa0470440:intron 30.0%
CTGAATTTAGATTGTTTGGT+TGG - chr3_3:72508908-72508927 Msa0470440:intron 30.0%
!! ATTGTTTGGTTGGTGATATA+GGG - chr3_3:72508918-72508937 Msa0470440:intron 30.0%
TATAGGGTTTCTTAGACATA+AGG - chr3_3:72508934-72508953 Msa0470440:intron 30.0%
TAGACATAAGGATGAAAAGA+TGG - chr3_3:72508946-72508965 Msa0470440:intron 30.0%
TAAGGATGAAAAGATGGAAA+AGG - chr3_3:72508952-72508971 Msa0470440:intron 30.0%
AAACTTAAGGAGTGGAATTA+AGG + chr3_3:72509198-72509217 None:intergenic 30.0%
ATTACAATCTCATGGATACT+AGG - chr3_3:72509363-72509382 Msa0470440:intron 30.0%
ATGTATTATCCACTTCACAA+AGG + chr3_3:72509430-72509449 None:intergenic 30.0%
AATACATAGTAGTCTACCAA+AGG - chr3_3:72509443-72509462 Msa0470440:intron 30.0%
GATTATAGTGTTTCCTCTAA+TGG - chr3_3:72509485-72509504 Msa0470440:intron 30.0%
GAAAAAGGAATTGTGGATAA+TGG - chr3_3:72509606-72509625 Msa0470440:intron 30.0%
AATCTTCTCTATAAGGAACA+TGG + chr3_3:72509647-72509666 None:intergenic 30.0%
TCAGCTAAATCTTCTCTATA+AGG + chr3_3:72509654-72509673 None:intergenic 30.0%
GTAGATCACAGAAAGAGTAA+TGG - chr3_3:72505323-72505342 Msa0470440:exon 35.0%
GATAGACACAAAAATCTGGA+TGG - chr3_3:72505571-72505590 Msa0470440:CDS 35.0%
GAGAAAAACGTGAAACCAAA+AGG + chr3_3:72505677-72505696 None:intergenic 35.0%
TATAGTTTAGGGGTTCCATT+GGG + chr3_3:72505742-72505761 None:intergenic 35.0%
ATATAGTTTAGGGGTTCCAT+TGG + chr3_3:72505743-72505762 None:intergenic 35.0%
!!! GTCCCCAATATTTTAATAGC+AGG - chr3_3:72505820-72505839 Msa0470440:CDS 35.0%
GAATAATAAGAAGGAAGTCC+AGG - chr3_3:72506073-72506092 Msa0470440:intron 35.0%
!!! GGAGGAATTTTTTAGAAGCA+GGG + chr3_3:72506106-72506125 None:intergenic 35.0%
!!! AGGAGGAATTTTTTAGAAGC+AGG + chr3_3:72506107-72506126 None:intergenic 35.0%
AACAAAATGTTAGGAGAAGG+AGG + chr3_3:72506124-72506143 None:intergenic 35.0%
TTAGAAAAATTCAAGCCTCG+TGG - chr3_3:72506279-72506298 Msa0470440:intron 35.0%
CGACCTAAGTAGAATTCATA+AGG - chr3_3:72506314-72506333 Msa0470440:intron 35.0%
TTACACAGGCATAATGCATA+GGG + chr3_3:72506365-72506384 None:intergenic 35.0%
ATTACACAGGCATAATGCAT+AGG + chr3_3:72506366-72506385 None:intergenic 35.0%
AACTTGATTGTGACAGTGAT+TGG - chr3_3:72506795-72506814 Msa0470440:CDS 35.0%
ACTTGATTGTGACAGTGATT+GGG - chr3_3:72506796-72506815 Msa0470440:CDS 35.0%
GAATAGTATGTTGAGAGCAA+AGG + chr3_3:72506826-72506845 None:intergenic 35.0%
CGAGAGTCAAATCTAATTTG+AGG + chr3_3:72507087-72507106 None:intergenic 35.0%
ACCAGACTTTACTTACCTAT+CGG - chr3_3:72507107-72507126 Msa0470440:CDS 35.0%
! AAAGATAGTAATAGTGGGAG+TGG + chr3_3:72507228-72507247 None:intergenic 35.0%
TCCTGACAAGAGAGAAAATA+CGG + chr3_3:72507358-72507377 None:intergenic 35.0%
CTTGATATTGAGGTCAAATG+CGG - chr3_3:72507451-72507470 Msa0470440:intron 35.0%
TTGATATTGAGGTCAAATGC+GGG - chr3_3:72507452-72507471 Msa0470440:intron 35.0%
AGTCCATGATCTACTGAAAA+TGG - chr3_3:72507612-72507631 Msa0470440:intron 35.0%
TGAACGATGAGAAGAAAATG+TGG - chr3_3:72507674-72507693 Msa0470440:intron 35.0%
ATGCAGCCATTACAAATACT+AGG + chr3_3:72507886-72507905 None:intergenic 35.0%
! GAAAGTATACGGCATGATAA+GGG + chr3_3:72508026-72508045 None:intergenic 35.0%
! AGAAAGTATACGGCATGATA+AGG + chr3_3:72508027-72508046 None:intergenic 35.0%
! ATGCGTCTAAGATTCTTCTT+TGG - chr3_3:72508159-72508178 Msa0470440:CDS 35.0%
TTCTTCTTTGGACAAAATGC+AGG - chr3_3:72508171-72508190 Msa0470440:CDS 35.0%
! AAAGTACCTAATTCTGTGAG+AGG - chr3_3:72508233-72508252 Msa0470440:intron 35.0%
AGATATTTCCTCTATGAGAG+TGG - chr3_3:72508447-72508466 Msa0470440:intron 35.0%
TGTTGCAATGATTTCTGTGT+CGG - chr3_3:72508500-72508519 Msa0470440:intron 35.0%
GCATGTGAGATATAATTTGG+TGG + chr3_3:72508700-72508719 None:intergenic 35.0%
!! GATTGTTTGGTTGGTGATAT+AGG - chr3_3:72508917-72508936 Msa0470440:intron 35.0%
ATACATATCGAGGAGAGAAA+AGG + chr3_3:72509275-72509294 None:intergenic 35.0%
CTATCTTAGCATACATATCG+AGG + chr3_3:72509285-72509304 None:intergenic 35.0%
CTCGATATGTATGCTAAGAT+AGG - chr3_3:72509283-72509302 Msa0470440:intron 35.0%
ATGTGACATGATTTATGTGC+AGG - chr3_3:72509338-72509357 Msa0470440:intron 35.0%
! ATCTCATGGATACTAGGTTT+TGG - chr3_3:72509369-72509388 Msa0470440:intron 35.0%
GCAATATAAACTGCCATTAG+AGG + chr3_3:72509501-72509520 None:intergenic 35.0%
TACAGTAATGCAAAACCAAG+TGG - chr3_3:72509584-72509603 Msa0470440:intron 35.0%
ATGCAAAACCAAGTGGAAAA+AGG - chr3_3:72509591-72509610 Msa0470440:intron 35.0%
TACCAGAATAAAGGATCCAA+GGG - chr3_3:72509682-72509701 Msa0470440:exon 35.0%
AACATCCTCAAATCATGACG+AGG - chr3_3:72505395-72505414 Msa0470440:CDS 40.0%
AAGTACCTCGTCATGATTTG+AGG + chr3_3:72505403-72505422 None:intergenic 40.0%
! TTTTTGCCATATATAGGCCC+TGG - chr3_3:72505600-72505619 Msa0470440:CDS 40.0%
AGAAAACCAGGGCCTATATA+TGG + chr3_3:72505609-72505628 None:intergenic 40.0%
CCAAGGAAACAAGAAAACCA+GGG + chr3_3:72505620-72505639 None:intergenic 40.0%
ACTTACTGTTTCCAGGATCA+AGG + chr3_3:72505647-72505666 None:intergenic 40.0%
GAGAGTTACTTACTGTTTCC+AGG + chr3_3:72505654-72505673 None:intergenic 40.0%
! CAGTAAGTAACTCTCCCTTT+TGG - chr3_3:72505659-72505678 Msa0470440:intron 40.0%
ATAGTTTAGGGGTTCCATTG+GGG + chr3_3:72505741-72505760 None:intergenic 40.0%
!! ATTGTTTTACCTCGTATCCG+TGG + chr3_3:72506028-72506047 None:intergenic 40.0%
AACCACCTTAACAAGTCTGA+AGG - chr3_3:72506051-72506070 Msa0470440:CDS 40.0%
!! TTCCTTCAGACTTGTTAAGG+TGG + chr3_3:72506056-72506075 None:intergenic 40.0%
GTTGTTGTATTCAGTTGCTG+TGG - chr3_3:72506178-72506197 Msa0470440:CDS 40.0%
TTGTATTCAGTTGCTGTGGT+TGG - chr3_3:72506182-72506201 Msa0470440:CDS 40.0%
! TTGCTGTGGTTGGTACTTAT+TGG - chr3_3:72506192-72506211 Msa0470440:CDS 40.0%
CGCGCTTATAATTCAGTCAT+TGG - chr3_3:72506224-72506243 Msa0470440:CDS 40.0%
! GGGCCTTATGAATTCTACTT+AGG + chr3_3:72506320-72506339 None:intergenic 40.0%
!! TTTTGAGTCTGCAGAGGTTT+GGG - chr3_3:72506898-72506917 Msa0470440:intron 40.0%
ACCGATAGGTAAGTAAAGTC+TGG + chr3_3:72507111-72507130 None:intergenic 40.0%
AGACTTTACTTACCTATCGG+TGG - chr3_3:72507110-72507129 Msa0470440:CDS 40.0%
! AAATCGACTCCTCTAGTTCA+TGG - chr3_3:72507199-72507218 Msa0470440:intron 40.0%
! TCCGTATTTTCTCTCTTGTC+AGG - chr3_3:72507354-72507373 Msa0470440:intron 40.0%
ACCTCAATATCAAGGATCGT+GGG + chr3_3:72507445-72507464 None:intergenic 40.0%
CGCATTTGACCTCAATATCA+AGG + chr3_3:72507453-72507472 None:intergenic 40.0%
AGGCCATGATATCTCATTGA+GGG + chr3_3:72507540-72507559 None:intergenic 40.0%
! CGTCCATTTTCAGTAGATCA+TGG + chr3_3:72507618-72507637 None:intergenic 40.0%
!!! GTACCTTTTTTGTACAGGTG+AGG - chr3_3:72507837-72507856 Msa0470440:intron 40.0%
CTTCCTCACCTGTACAAAAA+AGG + chr3_3:72507843-72507862 None:intergenic 40.0%
! TTTTGTACAGGTGAGGAAGT+TGG - chr3_3:72507844-72507863 Msa0470440:intron 40.0%
TTGATGCCTCTCACAGAATT+AGG + chr3_3:72508242-72508261 None:intergenic 40.0%
ATGTAGACATTGGTAGATCG+TGG - chr3_3:72508360-72508379 Msa0470440:CDS 40.0%
TGTAGACATTGGTAGATCGT+GGG - chr3_3:72508361-72508380 Msa0470440:CDS 40.0%
ACCTATCTGCTATATTGTGC+AGG - chr3_3:72508416-72508435 Msa0470440:CDS 40.0%
TCCTGCACAATATAGCAGAT+AGG + chr3_3:72508420-72508439 None:intergenic 40.0%
GTTGCAATGATTTCTGTGTC+GGG - chr3_3:72508501-72508520 Msa0470440:intron 40.0%
ATTGTCTCCAGATAGGTCAT+TGG + chr3_3:72508541-72508560 None:intergenic 40.0%
GTTCAACATTGTCTCCAGAT+AGG + chr3_3:72508548-72508567 None:intergenic 40.0%
AAGGAAAGAAGCGGAGTTAA+GGG + chr3_3:72508586-72508605 None:intergenic 40.0%
AACCTTGAGAAGGAAAGAAG+CGG + chr3_3:72508595-72508614 None:intergenic 40.0%
! TTGGTGGTTACTGCTTAGTT+AGG + chr3_3:72508684-72508703 None:intergenic 40.0%
AAGCAGTGCTATGGCATAAA+TGG + chr3_3:72508781-72508800 None:intergenic 40.0%
AAACCGATGCGATGATGATA+AGG + chr3_3:72509055-72509074 None:intergenic 40.0%
! TTGTGCTGCTGCTAAACTTA+AGG + chr3_3:72509211-72509230 None:intergenic 40.0%
! ATTCTTGTGAGGTCCCATTT+TGG + chr3_3:72509234-72509253 None:intergenic 40.0%
TGCAGGTCATTACAATCTCA+TGG - chr3_3:72509355-72509374 Msa0470440:intron 40.0%
ACATAGTAGTCTACCAAAGG+TGG - chr3_3:72509446-72509465 Msa0470440:intron 40.0%
ATGAACACATTTGCCACCTT+TGG + chr3_3:72509462-72509481 None:intergenic 40.0%
AAGGTGGCAAATGTGTTCAT+TGG - chr3_3:72509462-72509481 Msa0470440:intron 40.0%
AGGTGGCAAATGTGTTCATT+GGG - chr3_3:72509463-72509482 Msa0470440:intron 40.0%
GAAGGTAAGGTAGATAACTG+AGG + chr3_3:72509523-72509542 None:intergenic 40.0%
!! CAGTGTCTTTTCTGAAGGTA+AGG + chr3_3:72509536-72509555 None:intergenic 40.0%
! CTCAACAGTGTCTTTTCTGA+AGG + chr3_3:72509541-72509560 None:intergenic 40.0%
! CCACAATTCCTTTTTCCACT+TGG + chr3_3:72509602-72509621 None:intergenic 40.0%
CCAAGTGGAAAAAGGAATTG+TGG - chr3_3:72509599-72509618 Msa0470440:intron 40.0%
ATATCCCGCTACCAGAATAA+AGG - chr3_3:72509673-72509692 Msa0470440:exon 40.0%
TGGATCCTTTATTCTGGTAG+CGG + chr3_3:72509681-72509700 None:intergenic 40.0%
CTACCAGAATAAAGGATCCA+AGG - chr3_3:72509681-72509700 Msa0470440:exon 40.0%
TACCCTTGGATCCTTTATTC+TGG + chr3_3:72509687-72509706 None:intergenic 40.0%
ATGCGTTTGATTCATACCCT+TGG + chr3_3:72509701-72509720 None:intergenic 40.0%
!! CCCTGGTTTTCTTGTTTCCT+TGG - chr3_3:72505617-72505636 Msa0470440:CDS 45.0%
GCCAAGGAAACAAGAAAACC+AGG + chr3_3:72505621-72505640 None:intergenic 45.0%
!! GTGGAAACTGATTTGCAAGC+TGG - chr3_3:72505996-72506015 Msa0470440:CDS 45.0%
! CAGTCATTGGCTGCAAATCT+TGG - chr3_3:72506237-72506256 Msa0470440:CDS 45.0%
ATAGCAGCTGACATACCTGA+AGG - chr3_3:72506653-72506672 Msa0470440:intron 45.0%
TTCAACATCCCATTATGGGC+AGG - chr3_3:72506843-72506862 Msa0470440:intron 45.0%
ACAGAACTCCTGCCCATAAT+GGG + chr3_3:72506854-72506873 None:intergenic 45.0%
AACAGAACTCCTGCCCATAA+TGG + chr3_3:72506855-72506874 None:intergenic 45.0%
!! TCTTGCTTTTGAGTCTGCAG+AGG - chr3_3:72506892-72506911 Msa0470440:intron 45.0%
!! CTTTTGAGTCTGCAGAGGTT+TGG - chr3_3:72506897-72506916 Msa0470440:intron 45.0%
TTTGAGTCTGCAGAGGTTTG+GGG - chr3_3:72506899-72506918 Msa0470440:intron 45.0%
TCCTAGTAAGTTGTGATCCG+CGG + chr3_3:72507138-72507157 None:intergenic 45.0%
TCTTAACCCTCCGGTTCTTA+GGG + chr3_3:72507169-72507188 None:intergenic 45.0%
ATCTTAACCCTCCGGTTCTT+AGG + chr3_3:72507170-72507189 None:intergenic 45.0%
AGCTCACTTGGTTGAGCTAA+GGG + chr3_3:72507411-72507430 None:intergenic 45.0%
TAGCTCACTTGGTTGAGCTA+AGG + chr3_3:72507412-72507431 None:intergenic 45.0%
CTCAATATCAAGGATCGTGG+GGG + chr3_3:72507443-72507462 None:intergenic 45.0%
CCTCAATATCAAGGATCGTG+GGG + chr3_3:72507444-72507463 None:intergenic 45.0%
GACCTCAATATCAAGGATCG+TGG + chr3_3:72507446-72507465 None:intergenic 45.0%
TGTGACCTAAAACGCAGTCA+CGG - chr3_3:72507478-72507497 Msa0470440:intron 45.0%
TGCCCCTCAATGAGATATCA+TGG - chr3_3:72507534-72507553 Msa0470440:intron 45.0%
GGCCATGATATCTCATTGAG+GGG + chr3_3:72507539-72507558 None:intergenic 45.0%
GAGGCCATGATATCTCATTG+AGG + chr3_3:72507541-72507560 None:intergenic 45.0%
TATGTAAATCCCCCAGCTTC+TGG - chr3_3:72507926-72507945 Msa0470440:intron 45.0%
TTAAGTACACCAGAAGCTGG+GGG + chr3_3:72507938-72507957 None:intergenic 45.0%
CTTAAGTACACCAGAAGCTG+GGG + chr3_3:72507939-72507958 None:intergenic 45.0%
CCTTAAGTACACCAGAAGCT+GGG + chr3_3:72507940-72507959 None:intergenic 45.0%
CCAGCTTCTGGTGTACTTAA+GGG - chr3_3:72507938-72507957 Msa0470440:intron 45.0%
TAGATAGCACAAGAGCAGAG+TGG + chr3_3:72508211-72508230 None:intergenic 45.0%
GTAGACATTGGTAGATCGTG+GGG - chr3_3:72508362-72508381 Msa0470440:CDS 45.0%
AAGCGAATCCACTCTCATAG+AGG + chr3_3:72508458-72508477 None:intergenic 45.0%
!! GAGTGGATTCGCTTTGTTTG+TGG - chr3_3:72508464-72508483 Msa0470440:intron 45.0%
GAAGGAAAGAAGCGGAGTTA+AGG + chr3_3:72508587-72508606 None:intergenic 45.0%
GATGGTAGAACTTTGTCCTG+AGG + chr3_3:72508805-72508824 None:intergenic 45.0%
GGACAAAGTTCTACCATCAC+AGG - chr3_3:72508807-72508826 Msa0470440:CDS 45.0%
ACCATCACAGGAACTTATGC+AGG - chr3_3:72508819-72508838 Msa0470440:CDS 45.0%
TCCTGCATAAGTTCCTGTGA+TGG + chr3_3:72508823-72508842 None:intergenic 45.0%
AACAGCAAGACTAGGTGCTA+TGG + chr3_3:72509000-72509019 None:intergenic 45.0%
ATGATGGCAACAGCAAGACT+AGG + chr3_3:72509008-72509027 None:intergenic 45.0%
!! AGTCTTGCTGTTGCCATCAT+TGG - chr3_3:72509008-72509027 Msa0470440:CDS 45.0%
TCGCCTTATCATCATCGCAT+CGG - chr3_3:72509049-72509068 Msa0470440:intron 45.0%
AGGAGTGGAATTAAGGCGAA+TGG + chr3_3:72509191-72509210 None:intergenic 45.0%
CTGCTGCTAAACTTAAGGAG+TGG + chr3_3:72509206-72509225 None:intergenic 45.0%
TAGCAGCAGCACAACCAAAA+TGG - chr3_3:72509217-72509236 Msa0470440:intron 45.0%
AGCAGCAGCACAACCAAAAT+GGG - chr3_3:72509218-72509237 Msa0470440:intron 45.0%
ACTTCACAAAGGCAGTACTG+AGG + chr3_3:72509419-72509438 None:intergenic 45.0%
TCAGTACTGCCTTTGTGAAG+TGG - chr3_3:72509418-72509437 Msa0470440:CDS 45.0%
GGATCCTTTATTCTGGTAGC+GGG + chr3_3:72509680-72509699 None:intergenic 45.0%
!!! TAACTTTTATTATTTATATT+TGG - chr3_3:72506544-72506563 Msa0470440:CDS 5.0%
!!! TTTTATAAAAAAATTAATGA+TGG + chr3_3:72508067-72508086 None:intergenic 5.0%
TCCTTGGCTTACCTTGATCC+TGG - chr3_3:72505633-72505652 Msa0470440:CDS 50.0%
TCCAGGATCAAGGTAAGCCA+AGG + chr3_3:72505637-72505656 None:intergenic 50.0%
GGGGAGAGAGTGATACTCTA+TGG + chr3_3:72505722-72505741 None:intergenic 50.0%
GAGTATCACTCTCTCCCCAA+TGG - chr3_3:72505724-72505743 Msa0470440:intron 50.0%
TTGCAAGCTGGAGCTAACCA+CGG - chr3_3:72506008-72506027 Msa0470440:CDS 50.0%
GCAAATCTTGGCGTAACCAC+TGG - chr3_3:72506249-72506268 Msa0470440:CDS 50.0%
TCGTATCTCGTACAACCACG+AGG + chr3_3:72506297-72506316 None:intergenic 50.0%
ACCGCGGATCACAACTTACT+AGG - chr3_3:72507134-72507153 Msa0470440:CDS 50.0%
! GACCCTTTTCCCCTAAGAAC+CGG - chr3_3:72507156-72507175 Msa0470440:CDS 50.0%
CTCCGGTTCTTAGGGGAAAA+GGG + chr3_3:72507161-72507180 None:intergenic 50.0%
! CTTTTCCCCTAAGAACCGGA+GGG - chr3_3:72507160-72507179 Msa0470440:intron 50.0%
CTTAACCCTCCGGTTCTTAG+GGG + chr3_3:72507168-72507187 None:intergenic 50.0%
GAGTGGTAGCCATGAACTAG+AGG + chr3_3:72507211-72507230 None:intergenic 50.0%
!!! GCGTGCTGAGTTTTGAACAG+TGG - chr3_3:72507279-72507298 Msa0470440:intron 50.0%
TCTTGTCAGGATTCGAACCC+TGG - chr3_3:72507367-72507386 Msa0470440:intron 50.0%
TATCAAGGATCGTGGGGGTT+GGG + chr3_3:72507438-72507457 None:intergenic 50.0%
ATATCAAGGATCGTGGGGGT+TGG + chr3_3:72507439-72507458 None:intergenic 50.0%
CCCCACGATCCTTGATATTG+AGG - chr3_3:72507441-72507460 Msa0470440:intron 50.0%
GTGACCTAAAACGCAGTCAC+GGG - chr3_3:72507479-72507498 Msa0470440:intron 50.0%
! CATTGAGGGGCATACAAGCA+AGG + chr3_3:72507526-72507545 None:intergenic 50.0%
CCCAGCTTCTGGTGTACTTA+AGG - chr3_3:72507937-72507956 Msa0470440:intron 50.0%
CCCTTAAGTACACCAGAAGC+TGG + chr3_3:72507941-72507960 None:intergenic 50.0%
GGGAATGTTTGTGCCCAAAC+TGG - chr3_3:72507958-72507977 Msa0470440:intron 50.0%
ATGTTTGTGCCCAAACTGGC+TGG - chr3_3:72507962-72507981 Msa0470440:intron 50.0%
!! AAGGGCAATAGCATCGGCTA+CGG + chr3_3:72507996-72508015 None:intergenic 50.0%
! AGCCGATGCTATTGCCCTTT+TGG - chr3_3:72507997-72508016 Msa0470440:intron 50.0%
! GCCGATGCTATTGCCCTTTT+GGG - chr3_3:72507998-72508017 Msa0470440:intron 50.0%
CCCCAAAAGGGCAATAGCAT+CGG + chr3_3:72508002-72508021 None:intergenic 50.0%
! CCGATGCTATTGCCCTTTTG+GGG - chr3_3:72507999-72508018 Msa0470440:intron 50.0%
! CGATGCTATTGCCCTTTTGG+GGG - chr3_3:72508000-72508019 Msa0470440:intron 50.0%
CATGATAAGGGCCCCCAAAA+GGG + chr3_3:72508014-72508033 None:intergenic 50.0%
ATAGCACAAGAGCAGAGTGG+AGG + chr3_3:72508208-72508227 None:intergenic 50.0%
GGCATCAATGTAAGCCACTC+AGG - chr3_3:72508254-72508273 Msa0470440:intron 50.0%
TGCTCTGCCAATGACCTATC+TGG - chr3_3:72508531-72508550 Msa0470440:intron 50.0%
CTCCGCTTCTTTCCTTCTCA+AGG - chr3_3:72508590-72508609 Msa0470440:intron 50.0%
TGCAGGACAGTACATCATGC+AGG - chr3_3:72508836-72508855 Msa0470440:intron 50.0%
!! CTTGCTGTTGCCATCATTGG+TGG - chr3_3:72509011-72509030 Msa0470440:CDS 50.0%
! GCCATCATTGGTGGTTCTTC+TGG - chr3_3:72509020-72509039 Msa0470440:intron 50.0%
GCCAGAAGAACCACCAATGA+TGG + chr3_3:72509024-72509043 None:intergenic 50.0%
TGGAGCTAACCACGGATACG+AGG - chr3_3:72506016-72506035 Msa0470440:CDS 55.0%
TAGAAGCAGGGCTAGAACCC+TGG + chr3_3:72506094-72506113 None:intergenic 55.0%
GCAGCTGACATACCTGAAGG+TGG - chr3_3:72506656-72506675 Msa0470440:intron 55.0%
TGGGCAGGAGTTCTGTTGAC+TGG - chr3_3:72506858-72506877 Msa0470440:intron 55.0%
CTTACCTATCGGTGGAACCG+CGG - chr3_3:72507118-72507137 Msa0470440:CDS 55.0%
CCTCCGGTTCTTAGGGGAAA+AGG + chr3_3:72507162-72507181 None:intergenic 55.0%
! CCTTTTCCCCTAAGAACCGG+AGG - chr3_3:72507159-72507178 Msa0470440:intron 55.0%
ATCAAGGATCGTGGGGGTTG+GGG + chr3_3:72507437-72507456 None:intergenic 55.0%
! ATCGCCCGTGACTGCGTTTT+AGG + chr3_3:72507486-72507505 None:intergenic 55.0%
GCTCCTTCACCAGCCAGTTT+GGG + chr3_3:72507974-72507993 None:intergenic 55.0%
GCATGATAAGGGCCCCCAAA+AGG + chr3_3:72508015-72508034 None:intergenic 55.0%
TCCTGAGGCAAGCAGTGCTA+TGG + chr3_3:72508790-72508809 None:intergenic 55.0%
TGATCCGCGGTTCCACCGAT+AGG + chr3_3:72507125-72507144 None:intergenic 60.0%
TCAAGGATCGTGGGGGTTGG+GGG + chr3_3:72507436-72507455 None:intergenic 60.0%
GTGCCCAAACTGGCTGGTGA+AGG - chr3_3:72507968-72507987 Msa0470440:intron 60.0%
GGCTCCTTCACCAGCCAGTT+TGG + chr3_3:72507975-72507994 None:intergenic 60.0%
GCCATAGCACTGCTTGCCTC+AGG - chr3_3:72508786-72508805 Msa0470440:CDS 60.0%
GGGTTGGGGGGTAGCTCACT+TGG + chr3_3:72507423-72507442 None:intergenic 65.0%
CAAGGATCGTGGGGGTTGGG+GGG + chr3_3:72507435-72507454 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72505307 72509723 72505307 ID=Msa0470440;Name=Msa0470440
chr3_3 mRNA 72505307 72509723 72505307 ID=Msa0470440-mRNA-1;Parent=Msa0470440;Name=Msa0470440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=35|0.91|0.92|1|1|1|13|31|529
chr3_3 exon 72505307 72505670 72505307 ID=Msa0470440-mRNA-1:exon:18165;Parent=Msa0470440-mRNA-1
chr3_3 exon 72505768 72505863 72505768 ID=Msa0470440-mRNA-1:exon:18164;Parent=Msa0470440-mRNA-1
chr3_3 exon 72505960 72506091 72505960 ID=Msa0470440-mRNA-1:exon:18163;Parent=Msa0470440-mRNA-1
chr3_3 exon 72506173 72506277 72506173 ID=Msa0470440-mRNA-1:exon:18162;Parent=Msa0470440-mRNA-1
chr3_3 exon 72506419 72506592 72506419 ID=Msa0470440-mRNA-1:exon:18161;Parent=Msa0470440-mRNA-1
chr3_3 exon 72506768 72506837 72506768 ID=Msa0470440-mRNA-1:exon:18160;Parent=Msa0470440-mRNA-1
chr3_3 exon 72506995 72507176 72506995 ID=Msa0470440-mRNA-1:exon:18159;Parent=Msa0470440-mRNA-1
chr3_3 exon 72508110 72508219 72508110 ID=Msa0470440-mRNA-1:exon:18158;Parent=Msa0470440-mRNA-1
chr3_3 exon 72508353 72508460 72508353 ID=Msa0470440-mRNA-1:exon:18157;Parent=Msa0470440-mRNA-1
chr3_3 exon 72508760 72508838 72508760 ID=Msa0470440-mRNA-1:exon:18156;Parent=Msa0470440-mRNA-1
chr3_3 exon 72508993 72509033 72508993 ID=Msa0470440-mRNA-1:exon:18155;Parent=Msa0470440-mRNA-1
chr3_3 exon 72509370 72509454 72509370 ID=Msa0470440-mRNA-1:exon:18154;Parent=Msa0470440-mRNA-1
chr3_3 exon 72509614 72509723 72509614 ID=Msa0470440-mRNA-1:exon:18153;Parent=Msa0470440-mRNA-1
chr3_3 five_prime_UTR 72509689 72509723 72509689 ID=Msa0470440-mRNA-1:five_prime_utr;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72509614 72509688 72509614 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72509370 72509454 72509370 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72508993 72509033 72508993 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72508760 72508838 72508760 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72508353 72508460 72508353 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72508110 72508219 72508110 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72506995 72507176 72506995 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72506768 72506837 72506768 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72506419 72506592 72506419 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72506173 72506277 72506173 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72505960 72506091 72505960 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72505768 72505863 72505768 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 CDS 72505338 72505670 72505338 ID=Msa0470440-mRNA-1:cds;Parent=Msa0470440-mRNA-1
chr3_3 three_prime_UTR 72505307 72505337 72505307 ID=Msa0470440-mRNA-1:three_prime_utr;Parent=Msa0470440-mRNA-1
Gene Sequence

>Msa0470440

ATGGCAGACTTGTTACAGCAGCAGCAGCAACAACAACAACATCAAGTTATGGAAACATCCTCAAATCATGACGAGACACAAAAATCTGGATGGAGAAAGTTTTTGCCATATATAGGCCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATACGAGTTGCTGTGGTTGGTACTTATTGGACTCATATTCGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTAACCACTGGCAAACACCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGCTTATGGTTATTAGCAGAGTTTGCTGTCATAGCAGCTGACATACCTGAAGGTGTGATTGGGACAGCCTTTGCTCTCAACATACTATTCAACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTTCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCTGCATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCCAAACTGGCTGGTGAAGGAGCCGTAGCCGATGCTATTGCCCTTTTGGGGGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTTGTGCTATCTAGAAAAGTACCTAATTCTGTGAGAGGCATCAATGAAGCATGTAGATATTTCCTCTATGAGAGTGGATTCGCTTTGTTTGTGGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACTGTCTGCTCTGCCAATGACCTATCTGGAGACAATGTTGAACGCTGCAATGATCTCACCCTTAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACTTATGCAGGACAGTACATCATGCAGGGTTTCTTAGACATAAGGATGAAAAGATGGAAAAGGAACTTGATGACTAGATGCATTGCCATAGCACCTAGTCTTGCTGTTGCCATCATTGGTGGTTCTTCTGGCTCTAGTCGCCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCCTTAATTCCACTCCTTAAGTTTAGCAGCAGCACAACCAAAATGGGACCTCACAAGAATTCTATTATTGTCATTACAATCTCATGGATACTAGGTTTTGGAATCATTAGTATCAATGTGTACTACCTCAGTACTGCCTTTGTGAAGTGGATAATACATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAGTTTATATTGCCTCAGTTATCTACCTTACCTTCAGAAAAGACACTGTTGAGACGTTCATCGAGACGAAAAATGATACAGTAATGCAAAACCAAGTGGAAAAAGGAATTGTGGATAATGGTCAGTTAGAGTTGAGCCATGTTCCTTATAGAGAAGATTTAGCTGATATCCCGCTACCAGAATAA

Protein sequence

>Msa0470440

MADLLQQQQQQQQHQVMETSSNHDETQKSGWRKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEFAVIAADIPEGVIGTAFALNILFNIPLWAGVLLTGFSTLLLLSLQRFGVRKLELLITILVFVMAACFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHNLFLHSALVLSRKVPNSVRGINEACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIIVITISWILGFGIISINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAVYIASVIYLTFRKDTVETFIETKNDTVMQNQVEKGIVDNGQLELSHVPYREDLADIPLPE*