AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525460 MtrunA17_Chr3g0124991 97.180 532 11 2 1 529 1 531 0.0 1047
Msa0525460 MtrunA17_Chr3g0124971 82.296 514 86 2 20 529 26 538 0.0 827
Msa0525460 MtrunA17_Chr2g0333811 58.674 513 203 4 20 529 31 537 0.0 618
Msa0525460 MtrunA17_Chr3g0134491 42.325 456 238 9 31 478 66 504 1.45e-105 326
Msa0525460 MtrunA17_Chr5g0401611 42.198 455 240 9 31 478 52 490 2.02e-105 325
Msa0525460 MtrunA17_Chr4g0053701 42.017 476 244 10 24 484 39 497 5.81e-104 321
Msa0525460 MtrunA17_Chr8g0347551 38.254 481 267 9 11 478 58 521 7.37e-95 299
Msa0525460 MtrunA17_Chr7g0264231 26.540 422 261 12 33 439 31 418 5.01e-32 131
Msa0525460 MtrunA17_Chr2g0309271 27.100 369 242 11 79 439 6 355 1.65e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525460 AT1G15960.1 59.454 513 188 6 22 529 21 518 0.0 614
Msa0525460 AT1G80830.1 59.400 500 197 2 26 525 38 531 0.0 607
Msa0525460 AT1G80830.2 59.400 500 197 2 26 525 38 531 0.0 607
Msa0525460 AT1G47240.1 40.725 469 253 9 18 478 52 503 2.71e-105 325
Msa0525460 AT5G67330.1 42.060 466 247 10 26 484 44 493 5.19e-105 324
Msa0525460 AT2G23150.1 43.230 421 222 7 31 443 53 464 7.66e-102 316
Msa0525460 AT4G18790.1 39.130 483 265 10 8 478 40 505 3.78e-99 310
Msa0525460 AT5G03280.1 27.273 418 274 9 32 439 16 413 3.46e-34 138

Find 124 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCATTGGTGGTTCTTC+TGG 0.206134 3_4:-78976672 Msa0525460:CDS
AGCCGATGCTATTGCCCTTT+TGG 0.215573 3_4:-78977695 Msa0525460:CDS
TACTATTCAACATCCCATTA+TGG 0.239108 3_4:-78978854 Msa0525460:CDS
TTGTTGTGGTTGGTACTTAT+TGG 0.281980 3_4:-78979500 Msa0525460:CDS
AAGCAATACTTCACAAATAA+TGG 0.285217 3_4:+78979087 None:intergenic
TAGCAGCAGCACAACCAAAA+TGG 0.288834 3_4:-78976475 Msa0525460:CDS
AAGGAAAGAAGCGGAGTTAA+GGG 0.309653 3_4:+78977109 None:intergenic
CGCGCTTATAATTCAGTCAT+TGG 0.312613 3_4:-78979468 Msa0525460:CDS
AAGCAGTGCTATGGCATAAA+TGG 0.318535 3_4:+78976914 None:intergenic
ATTCTTGTGAGGTCCCATTT+TGG 0.321502 3_4:+78976461 None:intergenic
TATTTGTGAAGTATTGCTTA+TGG 0.321986 3_4:-78979083 Msa0525460:CDS
TTGATGCCTCTCACAGAATT+AGG 0.325074 3_4:+78977453 None:intergenic
CCCAGCTTCTGGTGTACTTA+AGG 0.325720 3_4:-78977755 Msa0525460:CDS
GGCTCCTTCACCAGCCAGTT+TGG 0.327974 3_4:+78977720 None:intergenic
AAACTTAAGGAGTGGAATTA+AGG 0.328480 3_4:+78976497 None:intergenic
GAGAGTTACTTACTGTTTCC+AGG 0.331655 3_4:+78980024 None:intergenic
CAGTCATTGGCTGCAAATCT+TGG 0.336265 3_4:-78979455 Msa0525460:CDS
ATGCAAAACCAAGTGGAAAA+AGG 0.336749 3_4:-78976101 Msa0525460:CDS
TCAGCTAAATCTTCTCTATA+AGG 0.339264 3_4:+78976041 None:intergenic
AGTCTTGCTGTTGCCATCAT+TGG 0.340050 3_4:-78976684 Msa0525460:CDS
TAGCCTTGGATCCTTTATTC+TGG 0.340489 3_4:+78976008 None:intergenic
GAAGGAAAGAAGCGGAGTTA+AGG 0.344893 3_4:+78977108 None:intergenic
AACAGAACTCCTGCCCATAA+TGG 0.347335 3_4:+78978840 None:intergenic
TGCTCTGCCAATGACCTATC+TGG 0.350602 3_4:-78977161 Msa0525460:CDS
AGAAAACCAGGGCCTATATA+TGG 0.355996 3_4:+78980069 None:intergenic
ATCTCATGGATACTAGGTTT+TGG 0.367043 3_4:-78976323 Msa0525460:CDS
CCAGCTTCTGGTGTACTTAA+GGG 0.377926 3_4:-78977754 Msa0525460:CDS
GCAATATAAACTGCCATTAG+AGG 0.379665 3_4:+78976194 None:intergenic
GCTCCTTCACCAGCCAGTTT+GGG 0.383361 3_4:+78977721 None:intergenic
ATGAACACATTTGCCACCTT+TGG 0.395316 3_4:+78976233 None:intergenic
AAATATAAATCACCACCTTC+AGG 0.395323 3_4:+78979024 None:intergenic
ACAGAACTCCTGCCCATAAT+GGG 0.402615 3_4:+78978841 None:intergenic
GATTATAGTGTTTCCTCTAA+TGG 0.404806 3_4:-78976207 Msa0525460:CDS
ATATCCCGCTACCAGAATAA+AGG 0.421458 3_4:-78976019 Msa0525460:exon
TACTCTTTCTGTGATCTACT+TGG 0.424044 3_4:+78980356 None:intergenic
AAGGTGGCAAATGTGTTCAT+TGG 0.426629 3_4:-78976230 Msa0525460:CDS
AGAAAGTATACGGCATGATA+AGG 0.426875 3_4:+78977668 None:intergenic
ATTACAATCTCATGGATACT+AGG 0.429574 3_4:-78976329 Msa0525460:CDS
ACTATTCAACATCCCATTAT+GGG 0.435828 3_4:-78978853 Msa0525460:CDS
AAACCGATGCGATGATGATA+AGG 0.436840 3_4:+78976640 None:intergenic
ACTTACTGTTTCCAGGATCA+AGG 0.437998 3_4:+78980031 None:intergenic
TTGTGCTGCTGCTAAACTTA+AGG 0.438674 3_4:+78976484 None:intergenic
AGGTGGCAAATGTGTTCATT+GGG 0.438921 3_4:-78976229 Msa0525460:CDS
TCTTTGGCTTACCTTGATCC+TGG 0.439561 3_4:-78980042 Msa0525460:CDS
TATAGGGTTTCTTAGACATA+AGG 0.440552 3_4:-78976758 Msa0525460:intron
CTCCGCTTCTTTCCTTCTCA+AGG 0.452971 3_4:-78977102 Msa0525460:intron
ATGCGTTTGATTCATAGCCT+TGG 0.453713 3_4:+78975994 None:intergenic
AGCAGCAGCACAACCAAAAT+GGG 0.460120 3_4:-78976474 Msa0525460:CDS
TGGGCAGGAGTTCTGTTGAC+TGG 0.463210 3_4:-78978834 Msa0525460:CDS
AAGTACCTCGTCATGATTTG+AGG 0.466681 3_4:+78980275 None:intergenic
CCCTTAAGTACACCAGAAGC+TGG 0.474697 3_4:+78977754 None:intergenic
GAAAGTATACGGCATGATAA+GGG 0.476396 3_4:+78977669 None:intergenic
GTGGAAACTGATTTGCAAGC+TGG 0.476839 3_4:-78979696 Msa0525460:CDS
GCCATAGCACTGCTTGCCTC+AGG 0.483626 3_4:-78976906 Msa0525460:CDS
CTTGCTGTTGCCATCATTGG+TGG 0.486524 3_4:-78976681 Msa0525460:CDS
TTGTATTCAGTTGTTGTGGT+TGG 0.487061 3_4:-78979510 Msa0525460:intron
GCCAGAAGAACCACCAATGA+TGG 0.490481 3_4:+78976671 None:intergenic
TAGACATAAGGATGAAAAGA+TGG 0.495109 3_4:-78976746 Msa0525460:CDS
GAGTGGATTCGCTTTGTTTG+TGG 0.496012 3_4:-78977228 Msa0525460:CDS
GGGAATGTTTGTGCCCAAAC+TGG 0.496192 3_4:-78977734 Msa0525460:CDS
TAAGGATGAAAAGATGGAAA+AGG 0.497031 3_4:-78976740 Msa0525460:CDS
CCCCAAAAGGGCAATAGCAT+CGG 0.499242 3_4:+78977693 None:intergenic
TGGATCCTTTATTCTGGTAG+CGG 0.502929 3_4:+78976014 None:intergenic
ACAACAACAACATCAAGTTA+TGG 0.503391 3_4:-78980304 Msa0525460:CDS
AACAATCCTAGTATTTGTAA+TGG 0.508316 3_4:-78977815 Msa0525460:CDS
GGATCCTTTATTCTGGTAGC+GGG 0.510528 3_4:+78976015 None:intergenic
TGCAGGTCATTACAATCTCA+TGG 0.512529 3_4:-78976337 Msa0525460:intron
TCCTGAGGCAAGCAGTGCTA+TGG 0.526104 3_4:+78976905 None:intergenic
CCTTAAGTACACCAGAAGCT+GGG 0.527484 3_4:+78977755 None:intergenic
TGTTGCAATGATTTCTGTGT+CGG 0.531965 3_4:-78977192 Msa0525460:CDS
ACTTGATTGTGACAGTGATT+GGG 0.532187 3_4:-78978896 Msa0525460:intron
GTTGCAATGATTTCTGTGTC+GGG 0.533159 3_4:-78977191 Msa0525460:CDS
GCCAAAGAAACAAGAAAACC+AGG 0.535144 3_4:+78980057 None:intergenic
ATTGTCTCCAGATAGGTCAT+TGG 0.535156 3_4:+78977154 None:intergenic
TCAGTACTGCCTTTGTGAAG+TGG 0.535986 3_4:-78976274 Msa0525460:CDS
ACTTGTATGTAGAATGTGTT+GGG 0.538453 3_4:-78976951 Msa0525460:intron
CAACTTTACATACTTCTGAA+AGG 0.539753 3_4:+78979115 None:intergenic
TTCAACATCCCATTATGGGC+AGG 0.543459 3_4:-78978849 Msa0525460:CDS
GCAAATCTTGGCGTAACCAC+CGG 0.550727 3_4:-78979443 Msa0525460:intron
ACCATCACAGGAACTTATGC+AGG 0.551377 3_4:-78976873 Msa0525460:CDS
GTTCAACATTGTCTCCAGAT+AGG 0.551581 3_4:+78977147 None:intergenic
TTAAATTAGGAACCTTGAGA+AGG 0.552918 3_4:+78977090 None:intergenic
ATGTTTGTGCCCAAACTGGC+TGG 0.553195 3_4:-78977730 Msa0525460:CDS
TTGCTTATGGTTATTAGCAG+AGG 0.558459 3_4:-78979070 Msa0525460:CDS
AACAGCAAGACTAGGTGCTA+TGG 0.561217 3_4:+78976695 None:intergenic
AAGCGAATCCACTCTCATAG+AGG 0.564674 3_4:+78977237 None:intergenic
ATGCAGCCATTACAAATACT+AGG 0.564740 3_4:+78977809 None:intergenic
TTTGAGTCTGCAGAGGTTTG+GGG 0.565267 3_4:-78978793 Msa0525460:intron
AAGGGCAATAGCATCGGCTA+CGG 0.568499 3_4:+78977699 None:intergenic
AGGAGTGGAATTAAGGCGAA+TGG 0.571377 3_4:+78976504 None:intergenic
GGACAAAGTTCTACCATCAC+AGG 0.573167 3_4:-78976885 Msa0525460:CDS
CTTGTTGTATTCAGTTGTTG+TGG 0.573687 3_4:-78979514 Msa0525460:intron
CTTAAGTACACCAGAAGCTG+GGG 0.583089 3_4:+78977756 None:intergenic
TGCAGGACAGTACATCATGC+AGG 0.588205 3_4:-78976856 Msa0525460:intron
GTAGATCACAGAAAGAGTAA+TGG 0.591331 3_4:-78980352 Msa0525460:exon
GTGCCCAAACTGGCTGGTGA+AGG 0.595265 3_4:-78977724 Msa0525460:CDS
AACTTGTATGTAGAATGTGT+TGG 0.595481 3_4:-78976952 Msa0525460:intron
AGATATTTCCTCTATGAGAG+TGG 0.600417 3_4:-78977245 Msa0525460:CDS
AAAGTACCTAATTCTGTGAG+AGG 0.602100 3_4:-78977459 Msa0525460:CDS
CTACCAGAATAAAGGATCCA+AGG 0.603554 3_4:-78976011 Msa0525460:exon
TCGCCTTATCATCATCGCAT+CGG 0.604941 3_4:-78976643 Msa0525460:intron
ATGATGGCAACAGCAAGACT+AGG 0.605747 3_4:+78976687 None:intergenic
ACATAGTAGTCTACCAAAGG+TGG 0.621719 3_4:-78976246 Msa0525460:CDS
TCCTGCATAAGTTCCTGTGA+TGG 0.622524 3_4:+78976872 None:intergenic
TACAGTAATGCAAAACCAAG+TGG 0.623131 3_4:-78976108 Msa0525460:CDS
AATCTTCTCTATAAGGAACA+TGG 0.634971 3_4:+78976048 None:intergenic
AATACATAGTAGTCTACCAA+AGG 0.639513 3_4:-78976249 Msa0525460:CDS
AACCTTGAGAAGGAAAGAAG+CGG 0.643227 3_4:+78977100 None:intergenic
ATAGCACAAGAGCAGAGTGG+AGG 0.661177 3_4:+78977487 None:intergenic
ATAGCAGCTGACATACCTGA+AGG 0.665156 3_4:-78979039 Msa0525460:CDS
TGGAGCTAACCACGGATACG+AGG 0.667237 3_4:-78979676 Msa0525460:intron
CCAAAGAAACAAGAAAACCA+GGG 0.671441 3_4:+78980058 None:intergenic
CTGCTGCTAAACTTAAGGAG+TGG 0.674326 3_4:+78976489 None:intergenic
TAGATAGCACAAGAGCAGAG+TGG 0.681480 3_4:+78977484 None:intergenic
GAATAGTATGTTGAGAGCAA+AGG 0.682866 3_4:+78978869 None:intergenic
TTGCAAGCTGGAGCTAACCA+CGG 0.687380 3_4:-78979684 Msa0525460:CDS
GCAGCTGACATACCTGAAGG+TGG 0.689194 3_4:-78979036 Msa0525460:intron
ACAATAATAGAATTCTTGTG+AGG 0.689916 3_4:+78976450 None:intergenic
GAAGGTAAGGTAGATAACTG+AGG 0.700238 3_4:+78976172 None:intergenic
TTAAGTACACCAGAAGCTGG+GGG 0.708850 3_4:+78977757 None:intergenic
ATGTATTATCCACTTCACAA+AGG 0.714900 3_4:+78976265 None:intergenic
GATGGTAGAACTTTGTCCTG+AGG 0.715483 3_4:+78976890 None:intergenic
AACATCCTCAAATCATGACG+AGG 0.727935 3_4:-78980280 Msa0525460:intron
ACTTCACAAAGGCAGTACTG+AGG 0.732634 3_4:+78976276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTATATAGTTTAG+GGG + chr3_4:78976437-78976456 None:intergenic 10.0%
!!! GTATTTATTTTATATAGTTT+AGG + chr3_4:78976439-78976458 None:intergenic 10.0%
!! AACTTAAATTTCTTATTATA+AGG + chr3_4:78977140-78977159 None:intergenic 10.0%
!!! AAATTTAAGTTATAAATGAA+AGG - chr3_4:78977149-78977168 Msa0525460:CDS 10.0%
!! TTGAAATTCAAAATATAATT+TGG + chr3_4:78978235-78978254 None:intergenic 10.0%
!!! TTTTATTATTTATATTTGGC+AGG - chr3_4:78977216-78977235 Msa0525460:CDS 15.0%
!! AATTCAAAATATAATTTGGT+AGG + chr3_4:78978231-78978250 None:intergenic 15.0%
!! TCAAAATTACATAAATTGTA+GGG + chr3_4:78978325-78978344 None:intergenic 15.0%
!! TTCAAAATTACATAAATTGT+AGG + chr3_4:78978326-78978345 None:intergenic 15.0%
!! GAAATTAATAAATTTAGCTA+TGG - chr3_4:78978944-78978963 Msa0525460:intron 15.0%
!! GAAAACTTGAATAAATTAGA+AGG + chr3_4:78976131-78976150 None:intergenic 20.0%
!!! TCTTGTATATATACATGTTT+TGG - chr3_4:78976154-78976173 Msa0525460:CDS 20.0%
!! TACTATTGTTAAAAGAAACT+AGG + chr3_4:78976199-78976218 None:intergenic 20.0%
!! TATAACAAAATGTTAGAAGA+AGG + chr3_4:78976795-78976814 None:intergenic 20.0%
!!! TTGAATTAGTTTGATTGAAA+AGG + chr3_4:78977390-78977409 None:intergenic 20.0%
!! TACATAAAGATAGTAATAGT+GGG + chr3_4:78977901-78977920 None:intergenic 20.0%
!! TTACATAAAGATAGTAATAG+TGG + chr3_4:78977902-78977921 None:intergenic 20.0%
!!! ATCCTTGATTTTTATTTGAA+TGG - chr3_4:78977993-78978012 Msa0525460:intron 20.0%
!! CAAAATTACATAAATTGTAG+GGG + chr3_4:78978324-78978343 None:intergenic 20.0%
!! TGTAACATATGTAATCTTAA+GGG + chr3_4:78978484-78978503 None:intergenic 20.0%
!! ATGTAACATATGTAATCTTA+AGG + chr3_4:78978485-78978504 None:intergenic 20.0%
!!! ATATAGGAAAAGAAAGTATA+CGG + chr3_4:78978705-78978724 None:intergenic 20.0%
!! AAATTTATTAATTTCCTGAG+TGG + chr3_4:78978939-78978958 None:intergenic 20.0%
!! TACTAGTAGTGAATTAAATT+AGG + chr3_4:78979286-78979305 None:intergenic 20.0%
!! TAGTATATAATAAGTTGCTA+TGG - chr3_4:78979301-78979320 Msa0525460:intron 20.0%
!! TTTACTGAATTTAGATTGTT+TGG - chr3_4:78979572-78979591 Msa0525460:intron 20.0%
!! AGAAAGTTTTTGCCATATAT+AGG - chr3_4:78976279-78976298 Msa0525460:CDS 25.0%
! TCCATGCTATTAAAATATTG+GGG + chr3_4:78976527-78976546 None:intergenic 25.0%
! GTCCATGCTATTAAAATATT+GGG + chr3_4:78976528-78976547 None:intergenic 25.0%
! AGTCCATGCTATTAAAATAT+TGG + chr3_4:78976529-78976548 None:intergenic 25.0%
! ATTGATGAATGCTATAGTTT+AGG - chr3_4:78976551-78976570 Msa0525460:intron 25.0%
! TTGATGAATGCTATAGTTTA+GGG - chr3_4:78976552-78976571 Msa0525460:intron 25.0%
!! GAATTTTTCTAAATACTCAC+CGG + chr3_4:78976939-78976958 None:intergenic 25.0%
! TTAGAAAAATTCAAGTCTCA+TGG - chr3_4:78976947-78976966 Msa0525460:intron 25.0%
! AAGCAATACTTCACAAATAA+TGG + chr3_4:78977276-78977295 None:intergenic 25.0%
!!! TATTTGTGAAGTATTGCTTA+TGG - chr3_4:78977277-78977296 Msa0525460:intron 25.0%
! AAAAGGACAAAAATACAAGA+CGG + chr3_4:78977373-78977392 None:intergenic 25.0%
!! CTTTTAGATTTCATTTGTCA+TGG - chr3_4:78977695-78977714 Msa0525460:CDS 25.0%
!!! TTTTTTTAATCTTAACCCTC+CGG + chr3_4:78977846-78977865 None:intergenic 25.0%
! TGCCATTCAAATAAAAATCA+AGG + chr3_4:78977998-78978017 None:intergenic 25.0%
! TTAAAGTAGTAAAAAGTCCA+GGG + chr3_4:78978055-78978074 None:intergenic 25.0%
! ATTAAAGTAGTAAAAAGTCC+AGG + chr3_4:78978056-78978075 None:intergenic 25.0%
! TCAAAATATAATTTGGTAGG+AGG + chr3_4:78978228-78978247 None:intergenic 25.0%
! AACAATCCTAGTATTTGTAA+TGG - chr3_4:78978545-78978564 Msa0525460:intron 25.0%
!!! TAATGATGGACAAGTTATAT+AGG + chr3_4:78978721-78978740 None:intergenic 25.0%
!! TACTGTATGATATAAGCTTT+TGG + chr3_4:78978792-78978811 None:intergenic 25.0%
! TAGAAGTTAAATGTGCAATT+AGG + chr3_4:78979009-78979028 None:intergenic 25.0%
!! TTTAACTTCTATGTAGACAT+TGG - chr3_4:78979018-78979037 Msa0525460:intron 25.0%
!! CTATTTAACGATTTTGTTGA+AGG - chr3_4:78979548-78979567 Msa0525460:intron 25.0%
! ACAATAATAGAATTCTTGTG+AGG + chr3_4:78979913-78979932 None:intergenic 25.0%
ACAACAACAACATCAAGTTA+TGG - chr3_4:78976056-78976075 Msa0525460:CDS 30.0%
CATTGATAGACACAAAAATC+TGG - chr3_4:78976252-78976271 Msa0525460:CDS 30.0%
AGAAAAACGTGAAACCAAAA+AGG + chr3_4:78976361-78976380 None:intergenic 30.0%
ACGGAATGTGATATACTTTA+GGG + chr3_4:78976495-78976514 None:intergenic 30.0%
AATATTGGGGACTAAATTGA+CGG + chr3_4:78976514-78976533 None:intergenic 30.0%
!!! TCCCCAATATTTTAATAGCA+TGG - chr3_4:78976523-78976542 Msa0525460:CDS 30.0%
TTCTATGTGTTTGTGCTTAT+TGG - chr3_4:78976613-78976632 Msa0525460:intron 30.0%
AACAAAATGTTAGAAGAAGG+AGG + chr3_4:78976792-78976811 None:intergenic 30.0%
! ATTCTATTTAGGACGTATCT+CGG + chr3_4:78976977-78976996 None:intergenic 30.0%
CGTCCTAAATAGAATTCATA+AGG - chr3_4:78976982-78977001 Msa0525460:intron 30.0%
!! AGTAAGTTGATGATTGACTT+GGG + chr3_4:78977008-78977027 None:intergenic 30.0%
!! TAGTAAGTTGATGATTGACT+TGG + chr3_4:78977009-78977028 None:intergenic 30.0%
TTAGATCAAACTGATTACAC+AGG + chr3_4:78977047-78977066 None:intergenic 30.0%
GTTTGATCTAATAGTTGCTA+TGG - chr3_4:78977056-78977075 Msa0525460:intron 30.0%
GATATGTAACAGTGCTTAAA+TGG - chr3_4:78977092-78977111 Msa0525460:intron 30.0%
CAACTTTACATACTTCTGAA+AGG + chr3_4:78977248-78977267 None:intergenic 30.0%
AAATATAAATCACCACCTTC+AGG + chr3_4:78977339-78977358 None:intergenic 30.0%
TACTATTCAACATCCCATTA+TGG - chr3_4:78977506-78977525 Msa0525460:intron 30.0%
ACTATTCAACATCCCATTAT+GGG - chr3_4:78977507-78977526 Msa0525460:intron 30.0%
AGAAGAAAATGTGGATTTCA+TGG - chr3_4:78978351-78978370 Msa0525460:intron 30.0%
CATATGTAATCTTAAGGGTA+AGG + chr3_4:78978479-78978498 None:intergenic 30.0%
!!! TACATGTACCTTTTTTGTAC+AGG - chr3_4:78978500-78978519 Msa0525460:intron 30.0%
TTAAATTAGGAACCTTGAGA+AGG + chr3_4:78979273-78979292 None:intergenic 30.0%
AGTGCATGTGAGATATAATT+TGG + chr3_4:78979371-78979390 None:intergenic 30.0%
AACTTGTATGTAGAATGTGT+TGG - chr3_4:78979408-78979427 Msa0525460:intron 30.0%
ACTTGTATGTAGAATGTGTT+GGG - chr3_4:78979409-78979428 Msa0525460:intron 30.0%
CTGAATTTAGATTGTTTGGT+TGG - chr3_4:78979576-78979595 Msa0525460:intron 30.0%
!! ATTGTTTGGTTGGTGATATA+GGG - chr3_4:78979586-78979605 Msa0525460:intron 30.0%
TATAGGGTTTCTTAGACATA+AGG - chr3_4:78979602-78979621 Msa0525460:intron 30.0%
TAGACATAAGGATGAAAAGA+TGG - chr3_4:78979614-78979633 Msa0525460:intron 30.0%
TAAGGATGAAAAGATGGAAA+AGG - chr3_4:78979620-78979639 Msa0525460:intron 30.0%
AAACTTAAGGAGTGGAATTA+AGG + chr3_4:78979866-78979885 None:intergenic 30.0%
ATTACAATCTCATGGATACT+AGG - chr3_4:78980031-78980050 Msa0525460:intron 30.0%
ATGTATTATCCACTTCACAA+AGG + chr3_4:78980098-78980117 None:intergenic 30.0%
AATACATAGTAGTCTACCAA+AGG - chr3_4:78980111-78980130 Msa0525460:intron 30.0%
GATTATAGTGTTTCCTCTAA+TGG - chr3_4:78980153-78980172 Msa0525460:intron 30.0%
GAAAAAGGAATTGTGGATAA+TGG - chr3_4:78980274-78980293 Msa0525460:intron 30.0%
AATCTTCTCTATAAGGAACA+TGG + chr3_4:78980315-78980334 None:intergenic 30.0%
TCAGCTAAATCTTCTCTATA+AGG + chr3_4:78980322-78980341 None:intergenic 30.0%
TACTCTTTCTGTGATCTACT+TGG + chr3_4:78976007-78976026 None:intergenic 35.0%
GTAGATCACAGAAAGAGTAA+TGG - chr3_4:78976008-78976027 Msa0525460:exon 35.0%
GATAGACACAAAAATCTGGA+TGG - chr3_4:78976256-78976275 Msa0525460:CDS 35.0%
CCAAAGAAACAAGAAAACCA+GGG + chr3_4:78976305-78976324 None:intergenic 35.0%
! CAGTAAGTAACTCTCCTTTT+TGG - chr3_4:78976344-78976363 Msa0525460:intron 35.0%
! TACTTTAGGGGCAAATTTGA+AGG + chr3_4:78976482-78976501 None:intergenic 35.0%
CGGAATGTGATATACTTTAG+GGG + chr3_4:78976494-78976513 None:intergenic 35.0%
GACGGAATGTGATATACTTT+AGG + chr3_4:78976496-78976515 None:intergenic 35.0%
!! TGTTATTTCACAATTCGCAG+TGG - chr3_4:78976645-78976664 Msa0525460:CDS 35.0%
!! TTACTCCTTCAGACTTGTTA+AGG + chr3_4:78976727-78976746 None:intergenic 35.0%
AGTCTGAAGGAGTAATAAGA+AGG - chr3_4:78976732-78976751 Msa0525460:CDS 35.0%
AGTAATAAGAAGGAAGTCCA+GGG - chr3_4:78976742-78976761 Msa0525460:CDS 35.0%
!!! GGAGGAATTTTTTAGAAGCA+GGG + chr3_4:78976774-78976793 None:intergenic 35.0%
!!! AGGAGGAATTTTTTAGAAGC+AGG + chr3_4:78976775-78976794 None:intergenic 35.0%
! CTTGTTGTATTCAGTTGTTG+TGG - chr3_4:78976846-78976865 Msa0525460:intron 35.0%
TTGTATTCAGTTGTTGTGGT+TGG - chr3_4:78976850-78976869 Msa0525460:intron 35.0%
! TTGTTGTGGTTGGTACTTAT+TGG - chr3_4:78976860-78976879 Msa0525460:CDS 35.0%
! TTTTTCTAAATACTCACCGG+TGG + chr3_4:78976936-78976955 None:intergenic 35.0%
! GGGCCTTATGAATTCTATTT+AGG + chr3_4:78976988-78977007 None:intergenic 35.0%
TTACACAGGCATAATGCATA+GGG + chr3_4:78977033-78977052 None:intergenic 35.0%
ATTACACAGGCATAATGCAT+AGG + chr3_4:78977034-78977053 None:intergenic 35.0%
TTGCTTATGGTTATTAGCAG+AGG - chr3_4:78977290-78977309 Msa0525460:intron 35.0%
AACTTGATTGTGACAGTGAT+TGG - chr3_4:78977463-78977482 Msa0525460:CDS 35.0%
ACTTGATTGTGACAGTGATT+GGG - chr3_4:78977464-78977483 Msa0525460:CDS 35.0%
GAATAGTATGTTGAGAGCAA+AGG + chr3_4:78977494-78977513 None:intergenic 35.0%
CGAGAGTCAAATCTAATTTG+AGG + chr3_4:78977755-78977774 None:intergenic 35.0%
ACCAGACTTTACTTACCTAT+CGG - chr3_4:78977775-78977794 Msa0525460:CDS 35.0%
! AAAGATAGTAATAGTGGGAG+TGG + chr3_4:78977896-78977915 None:intergenic 35.0%
CTTGATATTGAGGTCAAATG+CGG - chr3_4:78978119-78978138 Msa0525460:intron 35.0%
TTGATATTGAGGTCAAATGC+GGG - chr3_4:78978120-78978139 Msa0525460:intron 35.0%
AGTCCATGATCTACTGAAAA+TGG - chr3_4:78978280-78978299 Msa0525460:intron 35.0%
TGAACGATGAGAAGAAAATG+TGG - chr3_4:78978342-78978361 Msa0525460:intron 35.0%
ATGCAGCCATTACAAATACT+AGG + chr3_4:78978554-78978573 None:intergenic 35.0%
! GAAAGTATACGGCATGATAA+GGG + chr3_4:78978694-78978713 None:intergenic 35.0%
! AGAAAGTATACGGCATGATA+AGG + chr3_4:78978695-78978714 None:intergenic 35.0%
! ATGCGTCTAAGATTCTTCTT+TGG - chr3_4:78978827-78978846 Msa0525460:CDS 35.0%
TTCTTCTTTGGACAAAATGC+AGG - chr3_4:78978839-78978858 Msa0525460:CDS 35.0%
! AAAGTACCTAATTCTGTGAG+AGG - chr3_4:78978901-78978920 Msa0525460:intron 35.0%
AGATATTTCCTCTATGAGAG+TGG - chr3_4:78979115-78979134 Msa0525460:CDS 35.0%
TGTTGCAATGATTTCTGTGT+CGG - chr3_4:78979168-78979187 Msa0525460:intron 35.0%
GCATGTGAGATATAATTTGG+TGG + chr3_4:78979368-78979387 None:intergenic 35.0%
!! GATTGTTTGGTTGGTGATAT+AGG - chr3_4:78979585-78979604 Msa0525460:intron 35.0%
ATACATATCGAGGAGAGAAA+AGG + chr3_4:78979943-78979962 None:intergenic 35.0%
CTATCTTAGCATACATATCG+AGG + chr3_4:78979953-78979972 None:intergenic 35.0%
CTCGATATGTATGCTAAGAT+AGG - chr3_4:78979951-78979970 Msa0525460:intron 35.0%
ATGTGACATGATTTATGTGC+AGG - chr3_4:78980006-78980025 Msa0525460:intron 35.0%
! ATCTCATGGATACTAGGTTT+TGG - chr3_4:78980037-78980056 Msa0525460:CDS 35.0%
GCAATATAAACTGCCATTAG+AGG + chr3_4:78980169-78980188 None:intergenic 35.0%
TACAGTAATGCAAAACCAAG+TGG - chr3_4:78980252-78980271 Msa0525460:intron 35.0%
ATGCAAAACCAAGTGGAAAA+AGG - chr3_4:78980259-78980278 Msa0525460:intron 35.0%
AACATCCTCAAATCATGACG+AGG - chr3_4:78976080-78976099 Msa0525460:CDS 40.0%
AAGTACCTCGTCATGATTTG+AGG + chr3_4:78976088-78976107 None:intergenic 40.0%
! TTTTTGCCATATATAGGCCC+TGG - chr3_4:78976285-78976304 Msa0525460:CDS 40.0%
AGAAAACCAGGGCCTATATA+TGG + chr3_4:78976294-78976313 None:intergenic 40.0%
!! CCCTGGTTTTCTTGTTTCTT+TGG - chr3_4:78976302-78976321 Msa0525460:CDS 40.0%
GCCAAAGAAACAAGAAAACC+AGG + chr3_4:78976306-78976325 None:intergenic 40.0%
ACTTACTGTTTCCAGGATCA+AGG + chr3_4:78976332-78976351 None:intergenic 40.0%
GAGAGTTACTTACTGTTTCC+AGG + chr3_4:78976339-78976358 None:intergenic 40.0%
GAAGAGAGAGTGATACTTTG+TGG + chr3_4:78976407-78976426 None:intergenic 40.0%
ATGTGTTTGTGCTTATTGGC+TGG - chr3_4:78976617-78976636 Msa0525460:intron 40.0%
!! ATTGTTTTACCTCGTATCCG+TGG + chr3_4:78976696-78976715 None:intergenic 40.0%
AACCACCTTAACAAGTCTGA+AGG - chr3_4:78976719-78976738 Msa0525460:CDS 40.0%
GAGTAATAAGAAGGAAGTCC+AGG - chr3_4:78976741-78976760 Msa0525460:CDS 40.0%
CGCGCTTATAATTCAGTCAT+TGG - chr3_4:78976892-78976911 Msa0525460:CDS 40.0%
!! TTTTGAGTCTGCAGAGGTTT+GGG - chr3_4:78977566-78977585 Msa0525460:intron 40.0%
ACCGATAGGTAAGTAAAGTC+TGG + chr3_4:78977779-78977798 None:intergenic 40.0%
AGACTTTACTTACCTATCGG+TGG - chr3_4:78977778-78977797 Msa0525460:CDS 40.0%
! AAATCGACTCCTCTAGTTCA+CGG - chr3_4:78977867-78977886 Msa0525460:intron 40.0%
TCCTGACAAGGGAGAAAATA+CGG + chr3_4:78978026-78978045 None:intergenic 40.0%
ACCTCAATATCAAGGATCGT+GGG + chr3_4:78978113-78978132 None:intergenic 40.0%
CGCATTTGACCTCAATATCA+AGG + chr3_4:78978121-78978140 None:intergenic 40.0%
AGGCCATGATATCTCATTGA+GGG + chr3_4:78978208-78978227 None:intergenic 40.0%
! CGTCCATTTTCAGTAGATCA+TGG + chr3_4:78978286-78978305 None:intergenic 40.0%
!!! GTACCTTTTTTGTACAGGTG+AGG - chr3_4:78978505-78978524 Msa0525460:intron 40.0%
CTTCCTCACCTGTACAAAAA+AGG + chr3_4:78978511-78978530 None:intergenic 40.0%
! TTTTGTACAGGTGAGGAAGT+TGG - chr3_4:78978512-78978531 Msa0525460:intron 40.0%
TTGATGCCTCTCACAGAATT+AGG + chr3_4:78978910-78978929 None:intergenic 40.0%
ATGTAGACATTGGTAGATCG+TGG - chr3_4:78979028-78979047 Msa0525460:intron 40.0%
TGTAGACATTGGTAGATCGT+GGG - chr3_4:78979029-78979048 Msa0525460:intron 40.0%
ACCTATCTGCTATATTGTGC+AGG - chr3_4:78979084-78979103 Msa0525460:CDS 40.0%
TCCTGCACAATATAGCAGAT+AGG + chr3_4:78979088-78979107 None:intergenic 40.0%
GTTGCAATGATTTCTGTGTC+GGG - chr3_4:78979169-78979188 Msa0525460:intron 40.0%
ATTGTCTCCAGATAGGTCAT+TGG + chr3_4:78979209-78979228 None:intergenic 40.0%
GTTCAACATTGTCTCCAGAT+AGG + chr3_4:78979216-78979235 None:intergenic 40.0%
AAGGAAAGAAGCGGAGTTAA+GGG + chr3_4:78979254-78979273 None:intergenic 40.0%
AACCTTGAGAAGGAAAGAAG+CGG + chr3_4:78979263-78979282 None:intergenic 40.0%
! TTGGTGGTTACTGCTTAGTT+AGG + chr3_4:78979352-78979371 None:intergenic 40.0%
AAGCAGTGCTATGGCATAAA+TGG + chr3_4:78979449-78979468 None:intergenic 40.0%
AAACCGATGCGATGATGATA+AGG + chr3_4:78979723-78979742 None:intergenic 40.0%
! TTGTGCTGCTGCTAAACTTA+AGG + chr3_4:78979879-78979898 None:intergenic 40.0%
! ATTCTTGTGAGGTCCCATTT+TGG + chr3_4:78979902-78979921 None:intergenic 40.0%
TGCAGGTCATTACAATCTCA+TGG - chr3_4:78980023-78980042 Msa0525460:intron 40.0%
ACATAGTAGTCTACCAAAGG+TGG - chr3_4:78980114-78980133 Msa0525460:intron 40.0%
ATGAACACATTTGCCACCTT+TGG + chr3_4:78980130-78980149 None:intergenic 40.0%
AAGGTGGCAAATGTGTTCAT+TGG - chr3_4:78980130-78980149 Msa0525460:intron 40.0%
AGGTGGCAAATGTGTTCATT+GGG - chr3_4:78980131-78980150 Msa0525460:intron 40.0%
GAAGGTAAGGTAGATAACTG+AGG + chr3_4:78980191-78980210 None:intergenic 40.0%
!! CAGTGTCTTTTCTGAAGGTA+AGG + chr3_4:78980204-78980223 None:intergenic 40.0%
! CTCAACAGTGTCTTTTCTGA+AGG + chr3_4:78980209-78980228 None:intergenic 40.0%
! CCACAATTCCTTTTTCCACT+TGG + chr3_4:78980270-78980289 None:intergenic 40.0%
CCAAGTGGAAAAAGGAATTG+TGG - chr3_4:78980267-78980286 Msa0525460:intron 40.0%
ATATCCCGCTACCAGAATAA+AGG - chr3_4:78980341-78980360 Msa0525460:exon 40.0%
TGGATCCTTTATTCTGGTAG+CGG + chr3_4:78980349-78980368 None:intergenic 40.0%
CTACCAGAATAAAGGATCCA+AGG - chr3_4:78980349-78980368 Msa0525460:exon 40.0%
! TAGCCTTGGATCCTTTATTC+TGG + chr3_4:78980355-78980374 None:intergenic 40.0%
ATGCGTTTGATTCATAGCCT+TGG + chr3_4:78980369-78980388 None:intergenic 40.0%
! TCTTTGGCTTACCTTGATCC+TGG - chr3_4:78976318-78976337 Msa0525460:CDS 45.0%
!! GTGGAAACTGATTTGCAAGC+TGG - chr3_4:78976664-78976683 Msa0525460:CDS 45.0%
!! CTCCTTCAGACTTGTTAAGG+TGG + chr3_4:78976724-78976743 None:intergenic 45.0%
! CAGTCATTGGCTGCAAATCT+TGG - chr3_4:78976905-78976924 Msa0525460:CDS 45.0%
ATAGCAGCTGACATACCTGA+AGG - chr3_4:78977321-78977340 Msa0525460:intron 45.0%
TTCAACATCCCATTATGGGC+AGG - chr3_4:78977511-78977530 Msa0525460:intron 45.0%
ACAGAACTCCTGCCCATAAT+GGG + chr3_4:78977522-78977541 None:intergenic 45.0%
AACAGAACTCCTGCCCATAA+TGG + chr3_4:78977523-78977542 None:intergenic 45.0%
!! TCTTGCTTTTGAGTCTGCAG+AGG - chr3_4:78977560-78977579 Msa0525460:intron 45.0%
!! CTTTTGAGTCTGCAGAGGTT+TGG - chr3_4:78977565-78977584 Msa0525460:intron 45.0%
TTTGAGTCTGCAGAGGTTTG+GGG - chr3_4:78977567-78977586 Msa0525460:intron 45.0%
TCCTAGTAAGTTGTGATCCG+CGG + chr3_4:78977806-78977825 None:intergenic 45.0%
TCTTAACCCTCCGGTTCTTA+GGG + chr3_4:78977837-78977856 None:intergenic 45.0%
ATCTTAACCCTCCGGTTCTT+AGG + chr3_4:78977838-78977857 None:intergenic 45.0%
! TCCGTATTTTCTCCCTTGTC+AGG - chr3_4:78978022-78978041 Msa0525460:intron 45.0%
AGCTCACTTGGTTGAGCTAA+GGG + chr3_4:78978079-78978098 None:intergenic 45.0%
TAGCTCACTTGGTTGAGCTA+AGG + chr3_4:78978080-78978099 None:intergenic 45.0%
CTCAATATCAAGGATCGTGG+GGG + chr3_4:78978111-78978130 None:intergenic 45.0%
CCTCAATATCAAGGATCGTG+GGG + chr3_4:78978112-78978131 None:intergenic 45.0%
GACCTCAATATCAAGGATCG+TGG + chr3_4:78978114-78978133 None:intergenic 45.0%
TGTGACCTAAAACGCAGTCA+CGG - chr3_4:78978146-78978165 Msa0525460:intron 45.0%
TGCCCCTCAATGAGATATCA+TGG - chr3_4:78978202-78978221 Msa0525460:intron 45.0%
GGCCATGATATCTCATTGAG+GGG + chr3_4:78978207-78978226 None:intergenic 45.0%
GAGGCCATGATATCTCATTG+AGG + chr3_4:78978209-78978228 None:intergenic 45.0%
TATGTAAATCCCCCAGCTTC+TGG - chr3_4:78978594-78978613 Msa0525460:intron 45.0%
TTAAGTACACCAGAAGCTGG+GGG + chr3_4:78978606-78978625 None:intergenic 45.0%
CTTAAGTACACCAGAAGCTG+GGG + chr3_4:78978607-78978626 None:intergenic 45.0%
CCTTAAGTACACCAGAAGCT+GGG + chr3_4:78978608-78978627 None:intergenic 45.0%
CCAGCTTCTGGTGTACTTAA+GGG - chr3_4:78978606-78978625 Msa0525460:intron 45.0%
TAGATAGCACAAGAGCAGAG+TGG + chr3_4:78978879-78978898 None:intergenic 45.0%
GTAGACATTGGTAGATCGTG+GGG - chr3_4:78979030-78979049 Msa0525460:intron 45.0%
AAGCGAATCCACTCTCATAG+AGG + chr3_4:78979126-78979145 None:intergenic 45.0%
!! GAGTGGATTCGCTTTGTTTG+TGG - chr3_4:78979132-78979151 Msa0525460:intron 45.0%
GAAGGAAAGAAGCGGAGTTA+AGG + chr3_4:78979255-78979274 None:intergenic 45.0%
GATGGTAGAACTTTGTCCTG+AGG + chr3_4:78979473-78979492 None:intergenic 45.0%
GGACAAAGTTCTACCATCAC+AGG - chr3_4:78979475-78979494 Msa0525460:CDS 45.0%
ACCATCACAGGAACTTATGC+AGG - chr3_4:78979487-78979506 Msa0525460:CDS 45.0%
TCCTGCATAAGTTCCTGTGA+TGG + chr3_4:78979491-78979510 None:intergenic 45.0%
AACAGCAAGACTAGGTGCTA+TGG + chr3_4:78979668-78979687 None:intergenic 45.0%
ATGATGGCAACAGCAAGACT+AGG + chr3_4:78979676-78979695 None:intergenic 45.0%
!! AGTCTTGCTGTTGCCATCAT+TGG - chr3_4:78979676-78979695 Msa0525460:intron 45.0%
TCGCCTTATCATCATCGCAT+CGG - chr3_4:78979717-78979736 Msa0525460:intron 45.0%
AGGAGTGGAATTAAGGCGAA+TGG + chr3_4:78979859-78979878 None:intergenic 45.0%
CTGCTGCTAAACTTAAGGAG+TGG + chr3_4:78979874-78979893 None:intergenic 45.0%
TAGCAGCAGCACAACCAAAA+TGG - chr3_4:78979885-78979904 Msa0525460:intron 45.0%
AGCAGCAGCACAACCAAAAT+GGG - chr3_4:78979886-78979905 Msa0525460:intron 45.0%
ACTTCACAAAGGCAGTACTG+AGG + chr3_4:78980087-78980106 None:intergenic 45.0%
TCAGTACTGCCTTTGTGAAG+TGG - chr3_4:78980086-78980105 Msa0525460:CDS 45.0%
GGATCCTTTATTCTGGTAGC+GGG + chr3_4:78980348-78980367 None:intergenic 45.0%
!!! TATTTATTTTATATAGTTTA+GGG + chr3_4:78976438-78976457 None:intergenic 5.0%
!!! TAACTTTTATTATTTATATT+TGG - chr3_4:78977212-78977231 Msa0525460:CDS 5.0%
!!! TTTTATAAAAAAATTAATGA+TGG + chr3_4:78978735-78978754 None:intergenic 5.0%
TTGCAAGCTGGAGCTAACCA+CGG - chr3_4:78976676-78976695 Msa0525460:CDS 50.0%
GCAAATCTTGGCGTAACCAC+CGG - chr3_4:78976917-78976936 Msa0525460:CDS 50.0%
ACCGCGGATCACAACTTACT+AGG - chr3_4:78977802-78977821 Msa0525460:CDS 50.0%
! GACCCTTTTCCCCTAAGAAC+CGG - chr3_4:78977824-78977843 Msa0525460:CDS 50.0%
CTCCGGTTCTTAGGGGAAAA+GGG + chr3_4:78977829-78977848 None:intergenic 50.0%
! CTTTTCCCCTAAGAACCGGA+GGG - chr3_4:78977828-78977847 Msa0525460:CDS 50.0%
CTTAACCCTCCGGTTCTTAG+GGG + chr3_4:78977836-78977855 None:intergenic 50.0%
!!! GCGTGCTGAGTTTTGAACAG+TGG - chr3_4:78977947-78977966 Msa0525460:intron 50.0%
CAGGGTTCGAATCCTGACAA+GGG + chr3_4:78978037-78978056 None:intergenic 50.0%
TATCAAGGATCGTGGGGGTT+GGG + chr3_4:78978106-78978125 None:intergenic 50.0%
ATATCAAGGATCGTGGGGGT+TGG + chr3_4:78978107-78978126 None:intergenic 50.0%
CCCCACGATCCTTGATATTG+AGG - chr3_4:78978109-78978128 Msa0525460:intron 50.0%
GTGACCTAAAACGCAGTCAC+GGG - chr3_4:78978147-78978166 Msa0525460:intron 50.0%
! CATTGAGGGGCATACAAGCA+AGG + chr3_4:78978194-78978213 None:intergenic 50.0%
CCCAGCTTCTGGTGTACTTA+AGG - chr3_4:78978605-78978624 Msa0525460:intron 50.0%
CCCTTAAGTACACCAGAAGC+TGG + chr3_4:78978609-78978628 None:intergenic 50.0%
GGGAATGTTTGTGCCCAAAC+TGG - chr3_4:78978626-78978645 Msa0525460:intron 50.0%
ATGTTTGTGCCCAAACTGGC+TGG - chr3_4:78978630-78978649 Msa0525460:intron 50.0%
!! AAGGGCAATAGCATCGGCTA+CGG + chr3_4:78978664-78978683 None:intergenic 50.0%
! AGCCGATGCTATTGCCCTTT+TGG - chr3_4:78978665-78978684 Msa0525460:intron 50.0%
! GCCGATGCTATTGCCCTTTT+GGG - chr3_4:78978666-78978685 Msa0525460:intron 50.0%
CCCCAAAAGGGCAATAGCAT+CGG + chr3_4:78978670-78978689 None:intergenic 50.0%
! CCGATGCTATTGCCCTTTTG+GGG - chr3_4:78978667-78978686 Msa0525460:intron 50.0%
! CGATGCTATTGCCCTTTTGG+GGG - chr3_4:78978668-78978687 Msa0525460:intron 50.0%
CATGATAAGGGCCCCCAAAA+GGG + chr3_4:78978682-78978701 None:intergenic 50.0%
ATAGCACAAGAGCAGAGTGG+AGG + chr3_4:78978876-78978895 None:intergenic 50.0%
GGCATCAATGTAAGCCACTC+AGG - chr3_4:78978922-78978941 Msa0525460:intron 50.0%
TGCTCTGCCAATGACCTATC+TGG - chr3_4:78979199-78979218 Msa0525460:intron 50.0%
CTCCGCTTCTTTCCTTCTCA+AGG - chr3_4:78979258-78979277 Msa0525460:intron 50.0%
TGCAGGACAGTACATCATGC+AGG - chr3_4:78979504-78979523 Msa0525460:intron 50.0%
!! CTTGCTGTTGCCATCATTGG+TGG - chr3_4:78979679-78979698 Msa0525460:CDS 50.0%
! GCCATCATTGGTGGTTCTTC+TGG - chr3_4:78979688-78979707 Msa0525460:CDS 50.0%
GCCAGAAGAACCACCAATGA+TGG + chr3_4:78979692-78979711 None:intergenic 50.0%
TGGAGCTAACCACGGATACG+AGG - chr3_4:78976684-78976703 Msa0525460:CDS 55.0%
TAGAAGCAGGGCTAGAACCC+TGG + chr3_4:78976762-78976781 None:intergenic 55.0%
GCAGCTGACATACCTGAAGG+TGG - chr3_4:78977324-78977343 Msa0525460:intron 55.0%
TGGGCAGGAGTTCTGTTGAC+TGG - chr3_4:78977526-78977545 Msa0525460:intron 55.0%
CTTACCTATCGGTGGAACCG+CGG - chr3_4:78977786-78977805 Msa0525460:CDS 55.0%
CCTCCGGTTCTTAGGGGAAA+AGG + chr3_4:78977830-78977849 None:intergenic 55.0%
! CCTTTTCCCCTAAGAACCGG+AGG - chr3_4:78977827-78977846 Msa0525460:CDS 55.0%
GAGTGGTAGCCGTGAACTAG+AGG + chr3_4:78977879-78977898 None:intergenic 55.0%
CCAGGGTTCGAATCCTGACA+AGG + chr3_4:78978038-78978057 None:intergenic 55.0%
CCTTGTCAGGATTCGAACCC+TGG - chr3_4:78978035-78978054 Msa0525460:intron 55.0%
ATCAAGGATCGTGGGGGTTG+GGG + chr3_4:78978105-78978124 None:intergenic 55.0%
! ATCGCCCGTGACTGCGTTTT+AGG + chr3_4:78978154-78978173 None:intergenic 55.0%
GCTCCTTCACCAGCCAGTTT+GGG + chr3_4:78978642-78978661 None:intergenic 55.0%
GCATGATAAGGGCCCCCAAA+AGG + chr3_4:78978683-78978702 None:intergenic 55.0%
TCCTGAGGCAAGCAGTGCTA+TGG + chr3_4:78979458-78979477 None:intergenic 55.0%
TGATCCGCGGTTCCACCGAT+AGG + chr3_4:78977793-78977812 None:intergenic 60.0%
TCAAGGATCGTGGGGGTTGG+GGG + chr3_4:78978104-78978123 None:intergenic 60.0%
GTGCCCAAACTGGCTGGTGA+AGG - chr3_4:78978636-78978655 Msa0525460:intron 60.0%
GGCTCCTTCACCAGCCAGTT+TGG + chr3_4:78978643-78978662 None:intergenic 60.0%
GCCATAGCACTGCTTGCCTC+AGG - chr3_4:78979454-78979473 Msa0525460:CDS 60.0%
GGGTTGGGGGGTAGCTCACT+TGG + chr3_4:78978091-78978110 None:intergenic 65.0%
CAAGGATCGTGGGGGTTGGG+GGG + chr3_4:78978103-78978122 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78975991 78980391 78975991 ID=Msa0525460;Name=Msa0525460
chr3_4 mRNA 78975991 78980391 78975991 ID=Msa0525460-mRNA-1;Parent=Msa0525460;Name=Msa0525460-mRNA-1;_AED=0.31;_eAED=0.31;_QI=36|0.91|0.92|1|1|1|13|31|529
chr3_4 exon 78975991 78976354 78975991 ID=Msa0525460-mRNA-1:exon:23590;Parent=Msa0525460-mRNA-1
chr3_4 exon 78976452 78976547 78976452 ID=Msa0525460-mRNA-1:exon:23589;Parent=Msa0525460-mRNA-1
chr3_4 exon 78976644 78976775 78976644 ID=Msa0525460-mRNA-1:exon:23588;Parent=Msa0525460-mRNA-1
chr3_4 exon 78976857 78976961 78976857 ID=Msa0525460-mRNA-1:exon:23587;Parent=Msa0525460-mRNA-1
chr3_4 exon 78977103 78977276 78977103 ID=Msa0525460-mRNA-1:exon:23586;Parent=Msa0525460-mRNA-1
chr3_4 exon 78977452 78977521 78977452 ID=Msa0525460-mRNA-1:exon:23585;Parent=Msa0525460-mRNA-1
chr3_4 exon 78977679 78977860 78977679 ID=Msa0525460-mRNA-1:exon:23584;Parent=Msa0525460-mRNA-1
chr3_4 exon 78978794 78978903 78978794 ID=Msa0525460-mRNA-1:exon:23583;Parent=Msa0525460-mRNA-1
chr3_4 exon 78979037 78979144 78979037 ID=Msa0525460-mRNA-1:exon:23582;Parent=Msa0525460-mRNA-1
chr3_4 exon 78979444 78979522 78979444 ID=Msa0525460-mRNA-1:exon:23581;Parent=Msa0525460-mRNA-1
chr3_4 exon 78979677 78979717 78979677 ID=Msa0525460-mRNA-1:exon:23580;Parent=Msa0525460-mRNA-1
chr3_4 exon 78980037 78980121 78980037 ID=Msa0525460-mRNA-1:exon:23579;Parent=Msa0525460-mRNA-1
chr3_4 exon 78980281 78980391 78980281 ID=Msa0525460-mRNA-1:exon:23578;Parent=Msa0525460-mRNA-1
chr3_4 five_prime_UTR 78980356 78980391 78980356 ID=Msa0525460-mRNA-1:five_prime_utr;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78980281 78980355 78980281 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78980037 78980121 78980037 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78979677 78979717 78979677 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78979444 78979522 78979444 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78979037 78979144 78979037 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78978794 78978903 78978794 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78977679 78977860 78977679 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78977452 78977521 78977452 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78977103 78977276 78977103 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78976857 78976961 78976857 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78976644 78976775 78976644 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78976452 78976547 78976452 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 CDS 78976022 78976354 78976022 ID=Msa0525460-mRNA-1:cds;Parent=Msa0525460-mRNA-1
chr3_4 three_prime_UTR 78975991 78976021 78975991 ID=Msa0525460-mRNA-1:three_prime_utr;Parent=Msa0525460-mRNA-1
Gene Sequence

>Msa0525460

ATGGCAGACTTGTTACAGCAGCAGCAGCAACAACAACAACATCAAGTTATGGAAACATCCTCAAATCATGACGAGACACAAAAATCTGGATGGAGAAAGTTTTTGCCATATATAGGCCCTGGTTTTCTTGTTTCTTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATACGAGTTGTTGTGGTTGGTACTTATTGGACTCATATTCGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTAACCACCGGCAAACACCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGCTTATGGTTATTAGCAGAGGTTGCTGTCATAGCAGCTGACATACCTGAAGGTGTGATTGGGACAGCCTTTGCTCTCAACATACTATTCAACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTTCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCTGCATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCCAAACTGGCTGGTGAAGGAGCCGTAGCCGATGCTATTGCCCTTTTGGGGGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTTGTGCTATCTAGAAAAGTACCTAATTCTGTGAGAGGCATCAATGAAGCATGTAGATATTTCCTCTATGAGAGTGGATTCGCTTTGTTTGTGGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACTGTCTGCTCTGCCAATGACCTATCTGGAGACAATGTTGAACGCTGCAATGATCTCACCCTTAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACTTATGCAGGACAGTACATCATGCAGGGTTTCTTAGACATAAGGATGAAAAGATGGAAAAGGAACTTGATGACTAGATGCATTGCCATAGCACCTAGTCTTGCTGTTGCCATCATTGGTGGTTCTTCTGGCTCTAGTCGCCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCCTTAATTCCACTCCTTAAGTTTAGCAGCAGCACAACCAAAATGGGACCTCACAAGAATTCTATTATTGTCATTACAATCTCATGGATACTAGGTTTTGGAATCATTAGTATCAATGTGTACTACCTCAGTACTGCCTTTGTGAAGTGGATAATACATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAGTTTATATTGCCTCAGTTATCTACCTTACCTTCAGAAAAGACACTGTTGAGACGTTCATCGAGACGAAAAATGATACAGTAATGCAAAACCAAGTGGAAAAAGGAATTGTGGATAATGGTCAGTTAGAGTTGAGCCATGTTCCTTATAGAGAAGATTTAGCTGATATCCCGCTACCAGAATAA

Protein sequence

>Msa0525460

MADLLQQQQQQQQHQVMETSSNHDETQKSGWRKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEGVIGTAFALNILFNIPLWAGVLLTGFSTLLLLSLQRFGVRKLELLITILVFVMAACFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHNLFLHSALVLSRKVPNSVRGINEACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIIVITISWILGFGIISINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAVYIASVIYLTFRKDTVETFIETKNDTVMQNQVEKGIVDNGQLELSHVPYREDLADIPLPE*