Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256600 | XP_039689563.1 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256600 | sp|F4JVA9|SFH2_ARATH | 32.340 | 235 | 139 | 5 | 34 | 254 | 97 | 325 | 1.00e-21 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256600 | A0A396IML6 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 670 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa1256600 | 0.808143 | 3.579800e-50 | -8.615850e-47 |
| Msa0035790 | Msa1256600 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa0046680 | Msa1256600 | 0.842946 | 1.895515e-58 | -8.615850e-47 |
| Msa0051480 | Msa1256600 | 0.803836 | 2.882637e-49 | -8.615850e-47 |
| Msa0051620 | Msa1256600 | 0.833692 | 4.607255e-56 | -8.615850e-47 |
| Msa0051730 | Msa1256600 | 0.832228 | 1.065677e-55 | -8.615850e-47 |
| Msa0083890 | Msa1256600 | 0.809196 | 2.132309e-50 | -8.615850e-47 |
| Msa0744540 | Msa1256600 | 0.811403 | 7.124317e-51 | -8.615850e-47 |
| Msa0744550 | Msa1256600 | 0.814378 | 1.588435e-51 | -8.615850e-47 |
| Msa0744560 | Msa1256600 | 0.835804 | 1.355521e-56 | -8.615850e-47 |
| Msa0746340 | Msa1256600 | 0.933936 | 8.752474e-96 | -8.615850e-47 |
| Msa0826360 | Msa1256600 | 0.831070 | 2.055616e-55 | -8.615850e-47 |
| Msa0826370 | Msa1256600 | 0.843552 | 1.306367e-58 | -8.615850e-47 |
| Msa0826380 | Msa1256600 | 0.810130 | 1.343024e-50 | -8.615850e-47 |
| Msa0826450 | Msa1256600 | 0.820240 | 7.614726e-53 | -8.615850e-47 |
| Msa0143640 | Msa1256600 | 0.821527 | 3.851252e-53 | -8.615850e-47 |
| Msa0143830 | Msa1256600 | 0.817919 | 2.568596e-52 | -8.615850e-47 |
| Msa0146090 | Msa1256600 | 0.830111 | 3.530528e-55 | -8.615850e-47 |
| Msa0146200 | Msa1256600 | 0.805702 | 1.174857e-49 | -8.615850e-47 |
| Msa1256600 | Msa1263500 | 0.842610 | 2.327255e-58 | -8.615850e-47 |
| Msa1256600 | Msa1299480 | 0.814136 | 1.796836e-51 | -8.615850e-47 |
| Msa1256600 | Msa1307930 | 0.834404 | 3.056188e-56 | -8.615850e-47 |
| Msa1256600 | Msa1309050 | 0.801717 | 7.891251e-49 | -8.615850e-47 |
| Msa1256600 | Msa1333700 | 0.952477 | 2.227201e-110 | -8.615850e-47 |
| Msa1256600 | Msa1349830 | 0.817017 | 4.100420e-52 | -8.615850e-47 |
| Msa1256600 | Msa1369450 | 0.820853 | 5.506403e-53 | -8.615850e-47 |
| Msa1256600 | Msa1383790 | 0.800186 | 1.621982e-48 | -8.615850e-47 |
| Msa1256600 | Msa1387610 | 0.850659 | 1.472229e-60 | -8.615850e-47 |
| Msa1256600 | Msa1396160 | 0.805501 | 1.295009e-49 | -8.615850e-47 |
| Msa1256600 | Msa1398120 | 0.810305 | 1.231541e-50 | -8.615850e-47 |
| Msa1256600 | Msa1401110 | 0.806412 | 8.330096e-50 | -8.615850e-47 |
| Msa1256600 | Msa1449470 | 0.846707 | 1.834071e-59 | -8.615850e-47 |
| Msa1256600 | Msa1459930 | 0.832198 | 1.084061e-55 | -8.615850e-47 |
| Msa0385320 | Msa1256600 | 0.819384 | 1.194915e-52 | -8.615850e-47 |
| Msa0390790 | Msa1256600 | 0.803524 | 3.345218e-49 | -8.615850e-47 |
| Msa0421080 | Msa1256600 | 0.815044 | 1.131107e-51 | -8.615850e-47 |
| Msa0438070 | Msa1256600 | 0.803840 | 2.877432e-49 | -8.615850e-47 |
| Msa0466850 | Msa1256600 | 0.844647 | 6.640627e-59 | -8.615850e-47 |
| Msa0480530 | Msa1256600 | 0.806833 | 6.788919e-50 | -8.615850e-47 |
| Msa0480540 | Msa1256600 | 0.811944 | 5.434876e-51 | -8.615850e-47 |
| Msa0480550 | Msa1256600 | 0.834900 | 2.293819e-56 | -8.615850e-47 |
| Msa1184400 | Msa1256600 | 0.811443 | 6.983265e-51 | -8.615850e-47 |
| Msa1211610 | Msa1256600 | 0.810049 | 1.397966e-50 | -8.615850e-47 |
| Msa1223560 | Msa1256600 | 0.845208 | 4.686334e-59 | -8.615850e-47 |
| Msa1224510 | Msa1256600 | 0.941437 | 4.162210e-101 | -8.615850e-47 |
| Msa0497860 | Msa1256600 | 0.802947 | 4.403935e-49 | -8.615850e-47 |
| Msa0500770 | Msa1256600 | 0.813144 | 2.969960e-51 | -8.615850e-47 |
| Msa0513670 | Msa1256600 | 0.844604 | 6.819303e-59 | -8.615850e-47 |
| Msa0568110 | Msa1256600 | 0.828236 | 1.005586e-54 | -8.615850e-47 |
| Msa0570460 | Msa1256600 | 0.848249 | 6.914662e-60 | -8.615850e-47 |
| Msa0580840 | Msa1256600 | 0.819666 | 1.030226e-52 | -8.615850e-47 |
| Msa0585060 | Msa1256600 | 0.802389 | 5.741092e-49 | -8.615850e-47 |
| Msa0865810 | Msa1256600 | 0.847943 | 8.394885e-60 | -8.615850e-47 |
| Msa0865830 | Msa1256600 | 0.823666 | 1.224943e-53 | -8.615850e-47 |
| Msa0868180 | Msa1256600 | 0.802876 | 4.556021e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256600 | MtrunA17_Chr4g0076441 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 670 |
| Msa1256600 | MtrunA17_Chr2g0290661 | 81.553 | 309 | 57 | 0 | 2 | 310 | 7 | 315 | 0.0 | 514 |
| Msa1256600 | MtrunA17_Chr3g0102691 | 66.978 | 321 | 102 | 3 | 1 | 318 | 1 | 320 | 2.35e-164 | 462 |
| Msa1256600 | MtrunA17_Chr4g0075941 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 1.54e-115 | 331 |
| Msa1256600 | MtrunA17_Chr7g0236461 | 29.603 | 277 | 165 | 9 | 26 | 290 | 95 | 353 | 1.85e-21 | 95.1 |
| Msa1256600 | MtrunA17_Chr4g0035361 | 29.437 | 231 | 151 | 4 | 34 | 254 | 2 | 230 | 1.97e-21 | 94.7 |
| Msa1256600 | MtrunA17_Chr3g0144891 | 29.870 | 231 | 150 | 4 | 34 | 254 | 98 | 326 | 7.25e-21 | 93.2 |
| Msa1256600 | MtrunA17_Chr3g0144911 | 29.600 | 250 | 157 | 7 | 8 | 251 | 93 | 329 | 9.49e-20 | 89.4 |
| Msa1256600 | MtrunA17_Chr8g0369291 | 31.020 | 245 | 144 | 7 | 26 | 254 | 85 | 320 | 1.35e-19 | 89.7 |
| Msa1256600 | MtrunA17_Chr5g0399151 | 29.493 | 217 | 143 | 4 | 26 | 236 | 110 | 322 | 3.99e-19 | 87.8 |
| Msa1256600 | MtrunA17_Chr3g0141821 | 28.364 | 275 | 159 | 10 | 1 | 260 | 59 | 310 | 6.92e-19 | 87.4 |
| Msa1256600 | MtrunA17_Chr4g0035391 | 28.708 | 209 | 141 | 3 | 34 | 236 | 108 | 314 | 1.47e-18 | 86.7 |
| Msa1256600 | MtrunA17_Chr8g0372651 | 29.741 | 232 | 142 | 7 | 34 | 250 | 80 | 305 | 5.29e-18 | 84.7 |
| Msa1256600 | MtrunA17_Chr1g0155521 | 30.047 | 213 | 133 | 4 | 34 | 236 | 113 | 319 | 5.47e-18 | 84.7 |
| Msa1256600 | MtrunA17_Chr5g0404711 | 28.326 | 233 | 145 | 6 | 34 | 251 | 77 | 302 | 6.58e-18 | 84.3 |
| Msa1256600 | MtrunA17_Chr3g0080051 | 28.326 | 233 | 153 | 6 | 26 | 251 | 97 | 322 | 1.33e-15 | 77.8 |
| Msa1256600 | MtrunA17_Chr1g0161441 | 26.923 | 208 | 124 | 8 | 27 | 225 | 25 | 213 | 5.96e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256600 | AT1G55840.1 | 64.596 | 322 | 110 | 2 | 2 | 322 | 7 | 325 | 5.09e-165 | 462 |
| Msa1256600 | AT5G47730.4 | 70.550 | 309 | 89 | 1 | 2 | 310 | 7 | 313 | 5.50e-165 | 463 |
| Msa1256600 | AT5G47730.1 | 70.550 | 309 | 89 | 1 | 2 | 310 | 7 | 313 | 5.50e-165 | 463 |
| Msa1256600 | AT1G55840.2 | 67.333 | 300 | 94 | 2 | 24 | 322 | 2 | 298 | 1.39e-159 | 448 |
| Msa1256600 | AT5G47730.2 | 74.231 | 260 | 65 | 1 | 51 | 310 | 1 | 258 | 1.58e-142 | 404 |
| Msa1256600 | AT5G47730.3 | 74.231 | 260 | 65 | 1 | 51 | 310 | 1 | 258 | 1.58e-142 | 404 |
| Msa1256600 | AT4G39180.3 | 29.195 | 298 | 176 | 9 | 34 | 310 | 97 | 380 | 4.88e-23 | 100 |
| Msa1256600 | AT4G39180.2 | 29.195 | 298 | 176 | 9 | 34 | 310 | 97 | 380 | 4.88e-23 | 100 |
| Msa1256600 | AT4G39180.1 | 32.340 | 235 | 139 | 5 | 34 | 254 | 97 | 325 | 1.02e-22 | 99.0 |
| Msa1256600 | AT3G24840.7 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 9.93e-22 | 96.3 |
| Msa1256600 | AT3G24840.3 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 9.93e-22 | 96.3 |
| Msa1256600 | AT3G24840.5 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 9.93e-22 | 96.3 |
| Msa1256600 | AT3G24840.1 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 1.10e-21 | 96.3 |
| Msa1256600 | AT3G24840.6 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 1.10e-21 | 96.3 |
| Msa1256600 | AT3G24840.4 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 1.10e-21 | 96.3 |
| Msa1256600 | AT3G24840.2 | 30.380 | 237 | 148 | 6 | 26 | 250 | 98 | 329 | 1.10e-21 | 96.3 |
| Msa1256600 | AT4G34580.2 | 28.685 | 251 | 161 | 5 | 14 | 254 | 75 | 317 | 3.35e-21 | 94.7 |
| Msa1256600 | AT4G34580.1 | 28.685 | 251 | 161 | 5 | 14 | 254 | 75 | 317 | 3.35e-21 | 94.7 |
| Msa1256600 | AT2G21540.3 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 6.65e-21 | 94.0 |
| Msa1256600 | AT2G21540.5 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 6.65e-21 | 94.0 |
| Msa1256600 | AT5G47510.2 | 30.043 | 233 | 141 | 6 | 34 | 260 | 52 | 268 | 6.83e-21 | 92.4 |
| Msa1256600 | AT2G21540.6 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 7.54e-21 | 93.6 |
| Msa1256600 | AT2G21540.2 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 7.54e-21 | 93.6 |
| Msa1256600 | AT2G21540.1 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 7.54e-21 | 93.6 |
| Msa1256600 | AT2G21540.4 | 30.213 | 235 | 144 | 5 | 34 | 254 | 96 | 324 | 7.54e-21 | 93.6 |
| Msa1256600 | AT5G47510.4 | 30.043 | 233 | 141 | 6 | 34 | 260 | 52 | 268 | 8.32e-21 | 92.4 |
| Msa1256600 | AT5G47510.1 | 30.043 | 233 | 141 | 6 | 34 | 260 | 51 | 267 | 8.32e-21 | 92.4 |
| Msa1256600 | AT4G36490.1 | 30.172 | 232 | 142 | 6 | 34 | 251 | 79 | 304 | 5.13e-20 | 91.3 |
| Msa1256600 | AT2G18180.2 | 30.213 | 235 | 144 | 5 | 34 | 254 | 82 | 310 | 5.55e-20 | 90.9 |
| Msa1256600 | AT2G18180.3 | 30.472 | 233 | 142 | 5 | 36 | 254 | 13 | 239 | 6.25e-20 | 90.9 |
| Msa1256600 | AT2G18180.4 | 30.472 | 233 | 142 | 5 | 36 | 254 | 13 | 239 | 6.31e-20 | 90.5 |
| Msa1256600 | AT2G18180.1 | 30.213 | 235 | 144 | 5 | 34 | 254 | 82 | 310 | 6.41e-20 | 90.9 |
| Msa1256600 | AT2G16380.2 | 29.362 | 235 | 146 | 5 | 34 | 254 | 89 | 317 | 7.03e-20 | 90.9 |
| Msa1256600 | AT2G16380.1 | 29.362 | 235 | 146 | 5 | 34 | 254 | 89 | 317 | 7.03e-20 | 90.9 |
| Msa1256600 | AT2G21520.2 | 29.464 | 224 | 147 | 4 | 34 | 251 | 115 | 333 | 1.24e-19 | 90.1 |
| Msa1256600 | AT2G21520.3 | 29.464 | 224 | 147 | 4 | 34 | 251 | 115 | 333 | 1.24e-19 | 90.1 |
| Msa1256600 | AT2G21520.1 | 29.464 | 224 | 147 | 4 | 34 | 251 | 111 | 329 | 1.26e-19 | 90.1 |
| Msa1256600 | AT1G19650.3 | 28.309 | 272 | 157 | 8 | 14 | 250 | 62 | 330 | 2.47e-19 | 88.6 |
| Msa1256600 | AT1G19650.1 | 28.309 | 272 | 157 | 8 | 14 | 250 | 62 | 330 | 3.74e-19 | 88.6 |
| Msa1256600 | AT1G19650.2 | 30.131 | 229 | 148 | 5 | 33 | 251 | 32 | 258 | 7.56e-19 | 87.8 |
| Msa1256600 | AT4G39170.2 | 28.947 | 228 | 143 | 5 | 34 | 251 | 109 | 327 | 1.31e-18 | 87.0 |
| Msa1256600 | AT4G39170.1 | 28.947 | 228 | 143 | 5 | 34 | 251 | 109 | 327 | 1.42e-18 | 87.0 |
| Msa1256600 | AT5G47510.3 | 28.761 | 226 | 139 | 6 | 41 | 260 | 2 | 211 | 1.16e-17 | 82.8 |
| Msa1256600 | AT1G75370.2 | 27.273 | 231 | 156 | 4 | 34 | 254 | 114 | 342 | 1.24e-16 | 81.3 |
| Msa1256600 | AT1G75370.1 | 27.273 | 231 | 156 | 4 | 34 | 254 | 114 | 342 | 1.35e-16 | 80.9 |
| Msa1256600 | AT5G56160.2 | 27.338 | 278 | 185 | 8 | 8 | 272 | 69 | 342 | 7.44e-16 | 78.6 |
| Msa1256600 | AT5G56160.1 | 27.338 | 278 | 185 | 8 | 8 | 272 | 69 | 342 | 8.22e-16 | 78.6 |
| Msa1256600 | AT5G56160.3 | 27.338 | 278 | 185 | 8 | 8 | 272 | 69 | 342 | 8.22e-16 | 78.6 |
| Msa1256600 | AT1G55690.2 | 28.571 | 238 | 153 | 6 | 26 | 250 | 96 | 329 | 1.97e-15 | 77.4 |
| Msa1256600 | AT1G55690.4 | 28.571 | 238 | 153 | 6 | 26 | 250 | 96 | 329 | 1.97e-15 | 77.4 |
| Msa1256600 | AT1G55690.1 | 28.571 | 238 | 153 | 6 | 26 | 250 | 96 | 329 | 1.97e-15 | 77.4 |
| Msa1256600 | AT1G55690.5 | 28.571 | 238 | 153 | 6 | 26 | 250 | 96 | 329 | 1.97e-15 | 77.4 |
| Msa1256600 | AT1G55690.3 | 28.571 | 238 | 153 | 6 | 26 | 250 | 96 | 329 | 1.98e-15 | 77.4 |
| Msa1256600 | AT2G18180.5 | 28.440 | 218 | 136 | 5 | 51 | 254 | 1 | 212 | 1.39e-14 | 74.7 |
| Msa1256600 | AT2G16380.3 | 27.523 | 218 | 138 | 5 | 51 | 254 | 1 | 212 | 5.78e-14 | 72.8 |
| Msa1256600 | AT1G01630.1 | 27.322 | 183 | 113 | 7 | 34 | 213 | 53 | 218 | 1.05e-11 | 64.7 |
Find 112 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAATCAGCAGGAATAAT+TGG | 0.243946 | 8_2:+56757492 | None:intergenic |
| CTCAACTCAAAGCAATAAAA+TGG | 0.272672 | 8_2:-56758022 | Msa1256600:exon |
| CCTAACCTTGAATGGAAATA+AGG | 0.294757 | 8_2:-56754820 | Msa1256600:CDS |
| GACTGAGGCCTTTAGTAGTA+TGG | 0.307175 | 8_2:-56754551 | Msa1256600:three_prime_UTR |
| ACCCCAAACTTGTAGAAAAC+TGG | 0.309056 | 8_2:-56754665 | Msa1256600:three_prime_UTR |
| GTATCCACATCCGGAGGTTC+TGG | 0.320907 | 8_2:+56754879 | None:intergenic |
| AAGGGATTGGGATCCTTCTA+AGG | 0.324848 | 8_2:-56757773 | Msa1256600:CDS |
| GGATGTGTAAAGTTTGTATT+AGG | 0.326034 | 8_2:-56754335 | Msa1256600:three_prime_UTR |
| GGTCTTCCTGTCTTTGCAAT+TGG | 0.327042 | 8_2:-56757333 | Msa1256600:CDS |
| TAGTTTAACAACTCAATAAA+AGG | 0.331126 | 8_2:-56754731 | Msa1256600:three_prime_UTR |
| TAATTCCTGCAACTGATTCA+TGG | 0.344567 | 8_2:+56757996 | None:intergenic |
| AGAAAAGTGCAGGTCTTATC+AGG | 0.347127 | 8_2:-56756372 | Msa1256600:CDS |
| GTAATCTATCTATCTATCTA+TGG | 0.348035 | 8_2:+56758123 | None:intergenic |
| AGTTGATTGATTGTTTAAAC+TGG | 0.349882 | 8_2:-56757644 | Msa1256600:CDS |
| GATTCAAGGCCGAGAGCTTC+AGG | 0.351238 | 8_2:+56756969 | None:intergenic |
| CTCGGCCTTGAATCACATTA+AGG | 0.354278 | 8_2:-56756960 | Msa1256600:intron |
| GGCTTGAGCCGTCTTGGATT+AGG | 0.362583 | 8_2:+56754767 | None:intergenic |
| ACCATTTGATAAGCCTTAGA+AGG | 0.366631 | 8_2:+56757760 | None:intergenic |
| TGCAACAGCTTCACGGAGTC+TGG | 0.368534 | 8_2:+56754935 | None:intergenic |
| TTGTTCCTTATTTCCATTCA+AGG | 0.371242 | 8_2:+56754815 | None:intergenic |
| CCTGTCTTTGCAATTGGTGT+TGG | 0.372437 | 8_2:-56757327 | Msa1256600:CDS |
| CAACAAGCTGAAAATATGTA+TGG | 0.379181 | 8_2:+56756571 | None:intergenic |
| ATAAGGAACAATTGAACAAT+TGG | 0.379476 | 8_2:-56754803 | Msa1256600:CDS |
| GAAAATTATATTGAGATGAA+TGG | 0.383349 | 8_2:-56754251 | Msa1256600:three_prime_UTR |
| CCTTATTTCCATTCAAGGTT+AGG | 0.386830 | 8_2:+56754820 | None:intergenic |
| TAACAATACTGATAGATATC+TGG | 0.387001 | 8_2:-56754446 | Msa1256600:three_prime_UTR |
| ACCTTTACACAAGTGGTAAT+AGG | 0.387066 | 8_2:+56757007 | None:intergenic |
| TTTGATAGCCTAACCTTGAA+TGG | 0.388252 | 8_2:-56754828 | Msa1256600:CDS |
| GCTCTCAATGATTTCATGAT+AGG | 0.398756 | 8_2:-56754638 | Msa1256600:three_prime_UTR |
| TTGCCCTAGGCAGTAAGGTT+TGG | 0.398802 | 8_2:-56754312 | Msa1256600:three_prime_UTR |
| TCACAACTCATTGGATTGTC+CGG | 0.400882 | 8_2:-56757453 | Msa1256600:CDS |
| GCTTCCACCTTCTGAATGTC+TGG | 0.409269 | 8_2:+56755022 | None:intergenic |
| TGTGAGACTGCACATAATAA+TGG | 0.425984 | 8_2:+56757182 | None:intergenic |
| TTCCCTCTCCATACTACTAA+AGG | 0.427687 | 8_2:+56754543 | None:intergenic |
| GCTTTCTAAAAGCAAGGGAT+TGG | 0.428984 | 8_2:-56757786 | Msa1256600:CDS |
| CTTTCTAAAAGCAAGGGATT+GGG | 0.432846 | 8_2:-56757785 | Msa1256600:CDS |
| GGATTCCATGAATCAGTTGC+AGG | 0.433771 | 8_2:-56758001 | Msa1256600:CDS |
| GATGGTGGCTTGAGCCGTCT+TGG | 0.438882 | 8_2:+56754761 | None:intergenic |
| TAGCAAGCGCGCTATACGTT+AGG | 0.440762 | 8_2:-56754356 | Msa1256600:three_prime_UTR |
| ATACGTGATTCACAACTCAT+TGG | 0.449153 | 8_2:-56757462 | Msa1256600:CDS |
| GCCTATTACCACTTGTGTAA+AGG | 0.454247 | 8_2:-56757008 | Msa1256600:CDS |
| TTCTGTAGAAAAGAAGGCTC+TGG | 0.457102 | 8_2:-56755050 | Msa1256600:CDS |
| AAATAAGTATGCGTCTTCTC+AGG | 0.470509 | 8_2:+56756607 | None:intergenic |
| ATGAAATGATCCCTGCTTGA+TGG | 0.479907 | 8_2:+56754911 | None:intergenic |
| CCACATTTCTGTAGAAAAGA+AGG | 0.481927 | 8_2:-56755056 | Msa1256600:CDS |
| CCCCAAACTTGTAGAAAACT+GGG | 0.483726 | 8_2:-56754664 | Msa1256600:three_prime_UTR |
| AGGTACCTTAATGTGATTCA+AGG | 0.487226 | 8_2:+56756955 | None:intergenic |
| TCCTTCTAAGGCTTATCAAA+TGG | 0.487749 | 8_2:-56757761 | Msa1256600:intron |
| CCTGAAAAGTTGTCTGCAAT+GGG | 0.500033 | 8_2:+56757956 | None:intergenic |
| ATATCGCGATCGTGTAATCT+TGG | 0.500716 | 8_2:-56757146 | Msa1256600:intron |
| ACCTGAAAAGTTGTCTGCAA+TGG | 0.500831 | 8_2:+56757955 | None:intergenic |
| GAGCATACCCTTCCCAAGAA+AGG | 0.500885 | 8_2:+56754507 | None:intergenic |
| GTCTAAAACCTTTACACAAG+TGG | 0.503259 | 8_2:+56757000 | None:intergenic |
| AGCTGTTGCACCCATCAAGC+AGG | 0.504047 | 8_2:-56754922 | Msa1256600:CDS |
| AAAACCAAACCTTACTGCCT+AGG | 0.504328 | 8_2:+56754308 | None:intergenic |
| TGTGGAATTTCCAGAACCTC+CGG | 0.505738 | 8_2:-56754889 | Msa1256600:CDS |
| CTTGTCCTCTCGTGTAAAAG+TGG | 0.505908 | 8_2:+56756396 | None:intergenic |
| AAGCGAGAACTGCTATTCCT+TGG | 0.507986 | 8_2:-56755003 | Msa1256600:CDS |
| GCAACCCTTGTATCCACATC+CGG | 0.513462 | 8_2:+56754870 | None:intergenic |
| ATTTCCAGAACCTCCGGATG+TGG | 0.516108 | 8_2:-56754883 | Msa1256600:CDS |
| TGATGGGTGCAACAGCTTCA+CGG | 0.519474 | 8_2:+56754928 | None:intergenic |
| GATAGGTCCTTTCTTGGGAA+GGG | 0.519490 | 8_2:-56754514 | Msa1256600:three_prime_UTR |
| AGGATAGTTGAGATCATCAA+TGG | 0.519931 | 8_2:+56756627 | None:intergenic |
| CACAACTCATTGGATTGTCC+GGG | 0.520676 | 8_2:-56757452 | Msa1256600:CDS |
| AACCTCCGGATGTGGATACA+AGG | 0.521017 | 8_2:-56754875 | Msa1256600:CDS |
| TTAGGTTGCCCTAGGCAGTA+AGG | 0.521543 | 8_2:-56754317 | Msa1256600:three_prime_UTR |
| AGATAGGTCCTTTCTTGGGA+AGG | 0.523771 | 8_2:-56754515 | Msa1256600:three_prime_UTR |
| AACAAGCTGAAAATATGTAT+GGG | 0.528848 | 8_2:+56756572 | None:intergenic |
| ATTGTTCTATATAAATCAGC+AGG | 0.538192 | 8_2:+56757483 | None:intergenic |
| TTAAACTAGTCTTCAGATGG+TGG | 0.542463 | 8_2:+56754746 | None:intergenic |
| TGAAATTAACACAGTCCTTG+TGG | 0.544715 | 8_2:+56754383 | None:intergenic |
| TAAAACAAGGAAGAAACAAA+GGG | 0.549490 | 8_2:-56754694 | Msa1256600:three_prime_UTR |
| GACTCGCTTTCTAAAAGCAA+GGG | 0.549883 | 8_2:-56757791 | Msa1256600:CDS |
| AGTTTGTATTAGGTTGCCCT+AGG | 0.555979 | 8_2:-56754325 | Msa1256600:three_prime_UTR |
| CCAACACCAATTGCAAAGAC+AGG | 0.557244 | 8_2:+56757327 | None:intergenic |
| CTAAAACAAGGAAGAAACAA+AGG | 0.557659 | 8_2:-56754695 | Msa1256600:three_prime_UTR |
| ATTGAGATGAATGGTTAAGC+CGG | 0.560469 | 8_2:-56754242 | Msa1256600:three_prime_UTR |
| GAGGACAAGAAGAAAAGTGC+AGG | 0.566912 | 8_2:-56756382 | Msa1256600:CDS |
| CCATGCTTCTTCGATGCAGA+AGG | 0.568603 | 8_2:+56757034 | None:intergenic |
| ATTCGTTAATTTGTAGACTG+AGG | 0.570339 | 8_2:-56754566 | Msa1256600:three_prime_UTR |
| AATGATCAGAATGTTCATCA+AGG | 0.572623 | 8_2:-56757832 | Msa1256600:intron |
| TTGTTAAACTAGTCTTCAGA+TGG | 0.572957 | 8_2:+56754743 | None:intergenic |
| AAACCAAACCTTACTGCCTA+GGG | 0.576178 | 8_2:+56754309 | None:intergenic |
| TTGTAAAGCTGTTGGTGAAG+GGG | 0.576838 | 8_2:+56754975 | None:intergenic |
| GAACAATTGGACTAGAGCAC+AGG | 0.579823 | 8_2:-56754790 | Msa1256600:CDS |
| CATGACTGGCCTGAAGCTCT+CGG | 0.583248 | 8_2:-56756978 | Msa1256600:CDS |
| TTGGTGAAGGGGATGATCCA+AGG | 0.586370 | 8_2:+56754986 | None:intergenic |
| GTGCAGGTCTTATCAGGATG+CGG | 0.586473 | 8_2:-56756366 | Msa1256600:CDS |
| TGAAATGATCCCTGCTTGAT+GGG | 0.594800 | 8_2:+56754912 | None:intergenic |
| AGTTGTAAAGCTGTTGGTGA+AGG | 0.599771 | 8_2:+56754973 | None:intergenic |
| GAGCACCTCTCTTGTATACC+CGG | 0.601263 | 8_2:+56757434 | None:intergenic |
| CCTTCTGCATCGAAGAAGCA+TGG | 0.604202 | 8_2:-56757034 | Msa1256600:CDS |
| GGCCTTTAGTAGTATGGAGA+GGG | 0.605155 | 8_2:-56754545 | Msa1256600:three_prime_UTR |
| TGACTCGCTTTCTAAAAGCA+AGG | 0.605557 | 8_2:-56757792 | Msa1256600:CDS |
| TGATGTAGTTGTAAAGCTGT+TGG | 0.607103 | 8_2:+56754967 | None:intergenic |
| GTTGTAAAGCTGTTGGTGAA+GGG | 0.611186 | 8_2:+56754974 | None:intergenic |
| GCTGTTGCACCCATCAAGCA+GGG | 0.617758 | 8_2:-56754921 | Msa1256600:CDS |
| TCATCCAGACATTCAGAAGG+TGG | 0.620255 | 8_2:-56755026 | Msa1256600:CDS |
| CTTATCAGGATGCGGACGAG+AGG | 0.624579 | 8_2:-56756358 | Msa1256600:CDS |
| CTGCATCGAAGAAGCATGGA+CGG | 0.630026 | 8_2:-56757030 | Msa1256600:CDS |
| CAAGCAGGGATCATTTCATG+TGG | 0.642715 | 8_2:-56754907 | Msa1256600:CDS |
| AGCACAGGCCTAATCCAAGA+CGG | 0.643414 | 8_2:-56754775 | Msa1256600:exon |
| AGGCCTTTAGTAGTATGGAG+AGG | 0.645280 | 8_2:-56754546 | Msa1256600:three_prime_UTR |
| ACAAGCTGAAAATATGTATG+GGG | 0.656374 | 8_2:+56756573 | None:intergenic |
| GGATCATCCAGACATTCAGA+AGG | 0.659467 | 8_2:-56755029 | Msa1256600:CDS |
| ACCTCCGGATGTGGATACAA+GGG | 0.663935 | 8_2:-56754874 | Msa1256600:CDS |
| ATTGTCCGGGTATACAAGAG+AGG | 0.683235 | 8_2:-56757439 | Msa1256600:intron |
| AAACTTGTAGAAAACTGGGG+TGG | 0.683488 | 8_2:-56754660 | Msa1256600:three_prime_UTR |
| ACCCTTGTATCCACATCCGG+AGG | 0.690874 | 8_2:+56754873 | None:intergenic |
| AATGAAACGCTACTAAAACA+AGG | 0.692072 | 8_2:-56754707 | Msa1256600:three_prime_UTR |
| GAAAAGTTGTCTGCAATGGG+TGG | 0.699381 | 8_2:+56757959 | None:intergenic |
| CCCAAACTTGTAGAAAACTG+GGG | 0.717317 | 8_2:-56754663 | Msa1256600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTAATAATAGCAT+TGG | - | chr8_2:56755978-56755997 | Msa1256600:intron | 10.0% |
| !! | AATGTTAAGATATATATTTA+CGG | + | chr8_2:56756860-56756879 | None:intergenic | 10.0% |
| !! | GAAGTATAATTAATATTAAT+AGG | + | chr8_2:56756939-56756958 | None:intergenic | 10.0% |
| !! | TGAATTTAACAAATTAAATT+TGG | - | chr8_2:56757346-56757365 | Msa1256600:intron | 10.0% |
| !! | ATCAATTGAAATGTTATAAT+TGG | - | chr8_2:56755066-56755085 | Msa1256600:CDS | 15.0% |
| !!! | AACATCTCTTTTTATTTTTT+TGG | + | chr8_2:56755929-56755948 | None:intergenic | 15.0% |
| !! | AAAAATGAGATCATTATAAA+CGG | + | chr8_2:56756238-56756257 | None:intergenic | 15.0% |
| !!! | TTTATAATGATCTCATTTTT+TGG | - | chr8_2:56756238-56756257 | Msa1256600:intron | 15.0% |
| !! | TACAGTAAATTAAATGTTAA+GGG | + | chr8_2:56756431-56756450 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTTTTTTGAC+AGG | + | chr8_2:56756744-56756763 | None:intergenic | 15.0% |
| !!! | GACATTTTTCATAAATTTTT+TGG | - | chr8_2:56756771-56756790 | Msa1256600:intron | 15.0% |
| !! | GTGATAAAGAAATTATGTAA+AGG | + | chr8_2:56754897-56754916 | None:intergenic | 20.0% |
| !! | AAACATACAAATATGACATA+AGG | + | chr8_2:56755245-56755264 | None:intergenic | 20.0% |
| !! | GAACAAAAAACTCAAATAAT+AGG | + | chr8_2:56755368-56755387 | None:intergenic | 20.0% |
| !! | TTCATGAAGCAATAAATTAA+GGG | + | chr8_2:56755723-56755742 | None:intergenic | 20.0% |
| !! | ATTCATGAAGCAATAAATTA+AGG | + | chr8_2:56755724-56755743 | None:intergenic | 20.0% |
| !!! | ATGCAATTATTATGATCTTT+TGG | + | chr8_2:56756275-56756294 | None:intergenic | 20.0% |
| !! | AAAGAAATACAAGAACTTTA+TGG | + | chr8_2:56756394-56756413 | None:intergenic | 20.0% |
| !! | GTACAGTAAATTAAATGTTA+AGG | + | chr8_2:56756432-56756451 | None:intergenic | 20.0% |
| !!! | ACATTTAATTTACTGTACAT+TGG | - | chr8_2:56756434-56756453 | Msa1256600:intron | 20.0% |
| !!! | TTTTTCATAAATTTTTTGGC+TGG | - | chr8_2:56756775-56756794 | Msa1256600:intron | 20.0% |
| !! | TTTCATAAACAGATTTGAAT+GGG | + | chr8_2:56757162-56757181 | None:intergenic | 20.0% |
| !!! | TTTTCATAAACAGATTTGAA+TGG | + | chr8_2:56757163-56757182 | None:intergenic | 20.0% |
| !! | AATAAATACACTTATAGGAA+TGG | + | chr8_2:56757204-56757223 | None:intergenic | 20.0% |
| !! | ATTCCTATAAGTGTATTTAT+TGG | - | chr8_2:56757203-56757222 | Msa1256600:intron | 20.0% |
| !! | TAGTTTAACAACTCAATAAA+AGG | - | chr8_2:56757722-56757741 | Msa1256600:intron | 20.0% |
| !! | GAAAATTATATTGAGATGAA+TGG | - | chr8_2:56758202-56758221 | Msa1256600:five_prime_UTR | 20.0% |
| ! | GTAATCTATCTATCTATCTA+TGG | + | chr8_2:56754333-56754352 | None:intergenic | 25.0% |
| ! | GATCAAAACTATGCTATTAT+TGG | + | chr8_2:56754530-56754549 | None:intergenic | 25.0% |
| ! | AGTTGATTGATTGTTTAAAC+TGG | - | chr8_2:56754809-56754828 | Msa1256600:CDS | 25.0% |
| ! | AGAAATTATGTAAAGGATGA+AGG | + | chr8_2:56754890-56754909 | None:intergenic | 25.0% |
| ! | GGAAACTTGTAAAAAAATAG+AGG | + | chr8_2:56754919-56754938 | None:intergenic | 25.0% |
| ! | TATAAATCAGCAGGAATAAT+TGG | + | chr8_2:56754964-56754983 | None:intergenic | 25.0% |
| ! | ATTGTTCTATATAAATCAGC+AGG | + | chr8_2:56754973-56754992 | None:intergenic | 25.0% |
| ! | ATACAAATATGACATAAGGA+AGG | + | chr8_2:56755241-56755260 | None:intergenic | 25.0% |
| !! | TGTCATATTTGTATGTTTTC+AGG | - | chr8_2:56755247-56755266 | Msa1256600:intron | 25.0% |
| ! | TAAACAACTATTCAAGAATC+TGG | + | chr8_2:56755556-56755575 | None:intergenic | 25.0% |
| ! | TTCTTGAATAGTTGTTTAGT+TGG | - | chr8_2:56755558-56755577 | Msa1256600:intron | 25.0% |
| ! | AACAAGCTGAAAATATGTAT+GGG | + | chr8_2:56755884-56755903 | None:intergenic | 25.0% |
| ! | TGTTAACACTATACATTAAC+AGG | - | chr8_2:56756026-56756045 | Msa1256600:intron | 25.0% |
| ! | AGATCATAATAATTGCATAC+TGG | - | chr8_2:56756277-56756296 | Msa1256600:intron | 25.0% |
| !! | TAGTTTTCAACATATACGTT+TGG | - | chr8_2:56756610-56756629 | Msa1256600:CDS | 25.0% |
| !! | TTGCAATAAGATTAGTTGAA+TGG | + | chr8_2:56756703-56756722 | None:intergenic | 25.0% |
| ! | GTTAAGATATATATTTACGG+AGG | + | chr8_2:56756857-56756876 | None:intergenic | 25.0% |
| !! | TACTTGATCTTTTTAATCAG+TGG | + | chr8_2:56757112-56757131 | None:intergenic | 25.0% |
| ! | TTCATAAACAGATTTGAATG+GGG | + | chr8_2:56757161-56757180 | None:intergenic | 25.0% |
| ! | TCAAATCTGTTTATGAAAAG+CGG | - | chr8_2:56757164-56757183 | Msa1256600:CDS | 25.0% |
| ! | GAACCAATAAATACACTTAT+AGG | + | chr8_2:56757209-56757228 | None:intergenic | 25.0% |
| !!! | AAATTTTGACTCTATAGTCT+TGG | + | chr8_2:56757608-56757627 | None:intergenic | 25.0% |
| ! | ATAAGGAACAATTGAACAAT+TGG | - | chr8_2:56757650-56757669 | Msa1256600:intron | 25.0% |
| ! | TAAAACAAGGAAGAAACAAA+GGG | - | chr8_2:56757759-56757778 | Msa1256600:intron | 25.0% |
| ! | TAACAATACTGATAGATATC+TGG | - | chr8_2:56758007-56758026 | Msa1256600:exon | 25.0% |
| !! | TTTACTACTTCGATAGTTTT+TGG | + | chr8_2:56758041-56758060 | None:intergenic | 25.0% |
| CTCAACTCAAAGCAATAAAA+TGG | - | chr8_2:56754431-56754450 | Msa1256600:three_prime_UTR | 30.0% | |
| AATGATCAGAATGTTCATCA+AGG | - | chr8_2:56754621-56754640 | Msa1256600:three_prime_UTR | 30.0% | |
| CGAGAATATACATAAGGTAA+GGG | + | chr8_2:56754783-56754802 | None:intergenic | 30.0% | |
| TCGAGAATATACATAAGGTA+AGG | + | chr8_2:56754784-56754803 | None:intergenic | 30.0% | |
| GAGATTCGAGAATATACATA+AGG | + | chr8_2:56754789-56754808 | None:intergenic | 30.0% | |
| AATTATGTAAAGGATGAAGG+AGG | + | chr8_2:56754887-56754906 | None:intergenic | 30.0% | |
| ! | TTCTGAAAAAGAAATCAGCA+TGG | + | chr8_2:56754940-56754959 | None:intergenic | 30.0% |
| TGAAAAGGAAAGCAAAATGA+AGG | + | chr8_2:56755099-56755118 | None:intergenic | 30.0% | |
| ! | TTCATTTTGCTTTCCTTTTC+AGG | - | chr8_2:56755098-56755117 | Msa1256600:intron | 30.0% |
| ! | TCATTTTGCTTTCCTTTTCA+GGG | - | chr8_2:56755099-56755118 | Msa1256600:intron | 30.0% |
| CAACACCTTGATTAAACTTA+CGG | + | chr8_2:56755175-56755194 | None:intergenic | 30.0% | |
| ACAGAAGATAGAGTAATAGA+TGG | + | chr8_2:56755218-56755237 | None:intergenic | 30.0% | |
| ATGTTGAAAAGATCATTAGC+AGG | - | chr8_2:56755603-56755622 | Msa1256600:intron | 30.0% | |
| TACACTACTGTTAATTGGTT+CGG | + | chr8_2:56755630-56755649 | None:intergenic | 30.0% | |
| TCAGATACACTACTGTTAAT+TGG | + | chr8_2:56755635-56755654 | None:intergenic | 30.0% | |
| ACAAGCTGAAAATATGTATG+GGG | + | chr8_2:56755883-56755902 | None:intergenic | 30.0% | |
| CAACAAGCTGAAAATATGTA+TGG | + | chr8_2:56755885-56755904 | None:intergenic | 30.0% | |
| ! | CATACATATTTTCAGCTTGT+TGG | - | chr8_2:56755883-56755902 | Msa1256600:intron | 30.0% |
| AAAAGAGATGTTGTTCCTTA+TGG | - | chr8_2:56755937-56755956 | Msa1256600:intron | 30.0% | |
| !! | AATCTTGCTCTAAGAAACAA+AGG | + | chr8_2:56756157-56756176 | None:intergenic | 30.0% |
| AGTCAATAATTGAGATGTGA+AGG | - | chr8_2:56756191-56756210 | Msa1256600:intron | 30.0% | |
| ATAATTGCATACTGGATAAG+AGG | - | chr8_2:56756285-56756304 | Msa1256600:intron | 30.0% | |
| ! | TTTCCAACAACTAGTTTCAA+AGG | + | chr8_2:56756493-56756512 | None:intergenic | 30.0% |
| TGAAACTAGTTGTTGGAAAA+TGG | - | chr8_2:56756494-56756513 | Msa1256600:intron | 30.0% | |
| AGTAACTAATAGACTTGTCT+TGG | + | chr8_2:56756529-56756548 | None:intergenic | 30.0% | |
| ! | TATTTCTACACTTTCAACTG+CGG | + | chr8_2:56756563-56756582 | None:intergenic | 30.0% |
| GTTGAAAACTATTCCAATTC+TGG | + | chr8_2:56756601-56756620 | None:intergenic | 30.0% | |
| ACATAGAAAACTTGTGTTAC+AGG | + | chr8_2:56756661-56756680 | None:intergenic | 30.0% | |
| GTAAAGATAAAAGACCTTTG+TGG | - | chr8_2:56757039-56757058 | Msa1256600:intron | 30.0% | |
| GCACTTTACAAAGTAAAGTA+CGG | - | chr8_2:56757078-56757097 | Msa1256600:intron | 30.0% | |
| TTTGAATGGGGCAATTTAAA+AGG | + | chr8_2:56757149-56757168 | None:intergenic | 30.0% | |
| !! | TAAATTTGGTGTGTAGATCA+TGG | - | chr8_2:56757360-56757379 | Msa1256600:intron | 30.0% |
| ! | TTGTTCCTTATTTCCATTCA+AGG | + | chr8_2:56757641-56757660 | None:intergenic | 30.0% |
| !! | TTGTTAAACTAGTCTTCAGA+TGG | + | chr8_2:56757713-56757732 | None:intergenic | 30.0% |
| AATGAAACGCTACTAAAACA+AGG | - | chr8_2:56757746-56757765 | Msa1256600:intron | 30.0% | |
| CTAAAACAAGGAAGAAACAA+AGG | - | chr8_2:56757758-56757777 | Msa1256600:intron | 30.0% | |
| !! | ATTCGTTAATTTGTAGACTG+AGG | - | chr8_2:56757887-56757906 | Msa1256600:intron | 30.0% |
| TAAAAAGATAGGTCCTTTCT+TGG | - | chr8_2:56757933-56757952 | Msa1256600:intron | 30.0% | |
| AAAAAGATAGGTCCTTTCTT+GGG | - | chr8_2:56757934-56757953 | Msa1256600:intron | 30.0% | |
| AGTAAAAATATCGATCCACA+AGG | - | chr8_2:56758055-56758074 | Msa1256600:five_prime_UTR | 30.0% | |
| GGATGTGTAAAGTTTGTATT+AGG | - | chr8_2:56758118-56758137 | Msa1256600:five_prime_UTR | 30.0% | |
| ! | TAATTCCTGCAACTGATTCA+TGG | + | chr8_2:56754460-56754479 | None:intergenic | 35.0% |
| ! | CTTTCTAAAAGCAAGGGATT+GGG | - | chr8_2:56754668-56754687 | Msa1256600:three_prime_UTR | 35.0% |
| !! | TCCTTCTAAGGCTTATCAAA+TGG | - | chr8_2:56754692-56754711 | Msa1256600:three_prime_UTR | 35.0% |
| ACCATTTGATAAGCCTTAGA+AGG | + | chr8_2:56754696-56754715 | None:intergenic | 35.0% | |
| ATACGTGATTCACAACTCAT+TGG | - | chr8_2:56754991-56755010 | Msa1256600:CDS | 35.0% | |
| AGCATCCGTAAGTTTAATCA+AGG | - | chr8_2:56755167-56755186 | Msa1256600:intron | 35.0% | |
| TGTGAGACTGCACATAATAA+TGG | + | chr8_2:56755274-56755293 | None:intergenic | 35.0% | |
| ACCTTTACACAAGTGGTAAT+AGG | + | chr8_2:56755449-56755468 | None:intergenic | 35.0% | |
| ! | GTCTAAAACCTTTACACAAG+TGG | + | chr8_2:56755456-56755475 | None:intergenic | 35.0% |
| !!! | GTAAAGGTTTTAGACATGAC+TGG | - | chr8_2:56755461-56755480 | Msa1256600:intron | 35.0% |
| AGGTACCTTAATGTGATTCA+AGG | + | chr8_2:56755501-56755520 | None:intergenic | 35.0% | |
| AAGTAGCAGTGGAAACTAAA+AGG | + | chr8_2:56755521-56755540 | None:intergenic | 35.0% | |
| ATTCAAGAATCTGGTCCTAT+TGG | + | chr8_2:56755547-56755566 | None:intergenic | 35.0% | |
| ! | ACACTACTGTTAATTGGTTC+GGG | + | chr8_2:56755629-56755648 | None:intergenic | 35.0% |
| AGGATAGTTGAGATCATCAA+TGG | + | chr8_2:56755829-56755848 | None:intergenic | 35.0% | |
| AAATAAGTATGCGTCTTCTC+AGG | + | chr8_2:56755849-56755868 | None:intergenic | 35.0% | |
| !!! | CATATTTTCAGCTTGTTGGA+AGG | - | chr8_2:56755887-56755906 | Msa1256600:intron | 35.0% |
| ! | TAATAGCATTGGAGTCTGTA+TGG | - | chr8_2:56755989-56756008 | Msa1256600:intron | 35.0% |
| ATAGTGTTAACATCTTGCTG+AGG | + | chr8_2:56756018-56756037 | None:intergenic | 35.0% | |
| ! | ACTAAAGCCATTAGTTTAGC+AGG | - | chr8_2:56756315-56756334 | Msa1256600:intron | 35.0% |
| ! | AAATGTTAAGGGCATGTATG+TGG | + | chr8_2:56756420-56756439 | None:intergenic | 35.0% |
| ! | AACTAGTTTCAAAGGCTTTG+TGG | + | chr8_2:56756485-56756504 | None:intergenic | 35.0% |
| !! | AAGCCTTTGAAACTAGTTGT+TGG | - | chr8_2:56756487-56756506 | Msa1256600:intron | 35.0% |
| AGTATTACCTGTTCCAGAAT+TGG | - | chr8_2:56756585-56756604 | Msa1256600:CDS | 35.0% | |
| !! | AACTATTCCAATTCTGGAAC+AGG | + | chr8_2:56756595-56756614 | None:intergenic | 35.0% |
| !!! | TATTCCTTTTAGAACGCACA+CGG | - | chr8_2:56757254-56757273 | Msa1256600:intron | 35.0% |
| ! | CCTTCTTTTCTACAGAAATG+TGG | + | chr8_2:56757400-56757419 | None:intergenic | 35.0% |
| CCACATTTCTGTAGAAAAGA+AGG | - | chr8_2:56757397-56757416 | Msa1256600:intron | 35.0% | |
| TGATGTAGTTGTAAAGCTGT+TGG | + | chr8_2:56757489-56757508 | None:intergenic | 35.0% | |
| ! | TTTGATAGCCTAACCTTGAA+TGG | - | chr8_2:56757625-56757644 | Msa1256600:CDS | 35.0% |
| ! | CCTTATTTCCATTCAAGGTT+AGG | + | chr8_2:56757636-56757655 | None:intergenic | 35.0% |
| CCTAACCTTGAATGGAAATA+AGG | - | chr8_2:56757633-56757652 | Msa1256600:CDS | 35.0% | |
| !! | TTAAACTAGTCTTCAGATGG+TGG | + | chr8_2:56757710-56757729 | None:intergenic | 35.0% |
| GCTCTCAATGATTTCATGAT+AGG | - | chr8_2:56757815-56757834 | Msa1256600:CDS | 35.0% | |
| TGGAGAGGGAATAAAAAGAT+AGG | - | chr8_2:56757922-56757941 | Msa1256600:intron | 35.0% | |
| !!! | AGGGTATGCTCTTTTTTGTA+AGG | - | chr8_2:56757958-56757977 | Msa1256600:CDS | 35.0% |
| !!! | GCTCTTTTTTGTAAGGAGTT+TGG | - | chr8_2:56757965-56757984 | Msa1256600:CDS | 35.0% |
| TGAAATTAACACAGTCCTTG+TGG | + | chr8_2:56758073-56758092 | None:intergenic | 35.0% | |
| CCTGAAAAGTTGTCTGCAAT+GGG | + | chr8_2:56754500-56754519 | None:intergenic | 40.0% | |
| ACCTGAAAAGTTGTCTGCAA+TGG | + | chr8_2:56754501-56754520 | None:intergenic | 40.0% | |
| ! | TGACTCGCTTTCTAAAAGCA+AGG | - | chr8_2:56754661-56754680 | Msa1256600:three_prime_UTR | 40.0% |
| ! | GACTCGCTTTCTAAAAGCAA+GGG | - | chr8_2:56754662-56754681 | Msa1256600:three_prime_UTR | 40.0% |
| ! | GCTTTCTAAAAGCAAGGGAT+TGG | - | chr8_2:56754667-56754686 | Msa1256600:three_prime_UTR | 40.0% |
| TCACAACTCATTGGATTGTC+CGG | - | chr8_2:56755000-56755019 | Msa1256600:CDS | 40.0% | |
| !!! | ATCAAGGTGTTGCTTTTCGT+TGG | - | chr8_2:56755183-56755202 | Msa1256600:intron | 40.0% |
| ATATCGCGATCGTGTAATCT+TGG | - | chr8_2:56755307-56755326 | Msa1256600:intron | 40.0% | |
| TTCTTCTGACTCTCCTGATA+TGG | - | chr8_2:56755390-56755409 | Msa1256600:intron | 40.0% | |
| GCCTATTACCACTTGTGTAA+AGG | - | chr8_2:56755445-56755464 | Msa1256600:intron | 40.0% | |
| AGATGTTGTTCCTTATGGCT+TGG | - | chr8_2:56755942-56755961 | Msa1256600:intron | 40.0% | |
| ! | AGAAAAGTGCAGGTCTTATC+AGG | - | chr8_2:56756081-56756100 | Msa1256600:intron | 40.0% |
| !! | AACTAATGGCTTTAGTAGCG+TGG | + | chr8_2:56756311-56756330 | None:intergenic | 40.0% |
| ! | AAGCCATTAGTTTAGCAGGA+TGG | - | chr8_2:56756319-56756338 | Msa1256600:intron | 40.0% |
| GTTCCATCCTGCTAAACTAA+TGG | + | chr8_2:56756325-56756344 | None:intergenic | 40.0% | |
| AGTTTAGCAGGATGGAACAT+AGG | - | chr8_2:56756327-56756346 | Msa1256600:intron | 40.0% | |
| TGGAGACATTCTCTAATCTG+AGG | + | chr8_2:56756374-56756393 | None:intergenic | 40.0% | |
| !! | GAAAGTGCTCAATTAGTCTG+TGG | - | chr8_2:56756634-56756653 | Msa1256600:CDS | 40.0% |
| TAAAGTGCACCGAACGTTTA+CGG | + | chr8_2:56757066-56757085 | None:intergenic | 40.0% | |
| ! | ATTACCGTGTGCGTTCTAAA+AGG | + | chr8_2:56757261-56757280 | None:intergenic | 40.0% |
| TTCTGTAGAAAAGAAGGCTC+TGG | - | chr8_2:56757403-56757422 | Msa1256600:intron | 40.0% | |
| ! | TTGTAAAGCTGTTGGTGAAG+GGG | + | chr8_2:56757481-56757500 | None:intergenic | 40.0% |
| ! | GTTGTAAAGCTGTTGGTGAA+GGG | + | chr8_2:56757482-56757501 | None:intergenic | 40.0% |
| ! | AGTTGTAAAGCTGTTGGTGA+AGG | + | chr8_2:56757483-56757502 | None:intergenic | 40.0% |
| TGAAATGATCCCTGCTTGAT+GGG | + | chr8_2:56757544-56757563 | None:intergenic | 40.0% | |
| ATGAAATGATCCCTGCTTGA+TGG | + | chr8_2:56757545-56757564 | None:intergenic | 40.0% | |
| ACCCCAAACTTGTAGAAAAC+TGG | - | chr8_2:56757788-56757807 | Msa1256600:CDS | 40.0% | |
| ! | CCCAGTTTTCTACAAGTTTG+GGG | + | chr8_2:56757792-56757811 | None:intergenic | 40.0% |
| CCCCAAACTTGTAGAAAACT+GGG | - | chr8_2:56757789-56757808 | Msa1256600:CDS | 40.0% | |
| ! | CCCCAGTTTTCTACAAGTTT+GGG | + | chr8_2:56757793-56757812 | None:intergenic | 40.0% |
| CCCAAACTTGTAGAAAACTG+GGG | - | chr8_2:56757790-56757809 | Msa1256600:CDS | 40.0% | |
| ! | ACCCCAGTTTTCTACAAGTT+TGG | + | chr8_2:56757794-56757813 | None:intergenic | 40.0% |
| AAACTTGTAGAAAACTGGGG+TGG | - | chr8_2:56757793-56757812 | Msa1256600:CDS | 40.0% | |
| TTCCCTCTCCATACTACTAA+AGG | + | chr8_2:56757913-56757932 | None:intergenic | 40.0% | |
| ! | AGTTTGTATTAGGTTGCCCT+AGG | - | chr8_2:56758128-56758147 | Msa1256600:five_prime_UTR | 40.0% |
| AAACCAAACCTTACTGCCTA+GGG | + | chr8_2:56758147-56758166 | None:intergenic | 40.0% | |
| AAAACCAAACCTTACTGCCT+AGG | + | chr8_2:56758148-56758167 | None:intergenic | 40.0% | |
| GGATTCCATGAATCAGTTGC+AGG | - | chr8_2:56754452-56754471 | Msa1256600:three_prime_UTR | 45.0% | |
| GAAAAGTTGTCTGCAATGGG+TGG | + | chr8_2:56754497-56754516 | None:intergenic | 45.0% | |
| ! | CCCATTGCAGACAACTTTTC+AGG | - | chr8_2:56754497-56754516 | Msa1256600:three_prime_UTR | 45.0% |
| AAGGGATTGGGATCCTTCTA+AGG | - | chr8_2:56754680-56754699 | Msa1256600:three_prime_UTR | 45.0% | |
| CACAACTCATTGGATTGTCC+GGG | - | chr8_2:56755001-56755020 | Msa1256600:CDS | 45.0% | |
| ATTGTCCGGGTATACAAGAG+AGG | - | chr8_2:56755014-56755033 | Msa1256600:CDS | 45.0% | |
| AAGACAGGAAGACCCTGAAA+AGG | + | chr8_2:56755114-56755133 | None:intergenic | 45.0% | |
| GGTCTTCCTGTCTTTGCAAT+TGG | - | chr8_2:56755120-56755139 | Msa1256600:intron | 45.0% | |
| CCAACACCAATTGCAAAGAC+AGG | + | chr8_2:56755129-56755148 | None:intergenic | 45.0% | |
| CCTGTCTTTGCAATTGGTGT+TGG | - | chr8_2:56755126-56755145 | Msa1256600:intron | 45.0% | |
| CAGAAGGCTACAACCATATC+AGG | + | chr8_2:56755406-56755425 | None:intergenic | 45.0% | |
| CTCGGCCTTGAATCACATTA+AGG | - | chr8_2:56755493-56755512 | Msa1256600:intron | 45.0% | |
| CCTATTGGATCAAGTAGCAG+TGG | + | chr8_2:56755532-56755551 | None:intergenic | 45.0% | |
| ! | CCACTGCTACTTGATCCAAT+AGG | - | chr8_2:56755529-56755548 | Msa1256600:intron | 45.0% |
| CATGCAGAAACCAAGCCATA+AGG | + | chr8_2:56755955-56755974 | None:intergenic | 45.0% | |
| !!! | TGAAGCCACTTTTACACGAG+AGG | - | chr8_2:56756052-56756071 | Msa1256600:intron | 45.0% |
| CTTGTCCTCTCGTGTAAAAG+TGG | + | chr8_2:56756060-56756079 | None:intergenic | 45.0% | |
| ! | GAGGACAAGAAGAAAAGTGC+AGG | - | chr8_2:56756071-56756090 | Msa1256600:intron | 45.0% |
| ! | CAAAGGCTTTGTGGAGTGTA+AGG | + | chr8_2:56756476-56756495 | None:intergenic | 45.0% |
| TCTACACTTTCAACTGCGGT+TGG | + | chr8_2:56756559-56756578 | None:intergenic | 45.0% | |
| CTTTGTGGTCCGTAAACGTT+CGG | - | chr8_2:56757054-56757073 | Msa1256600:intron | 45.0% | |
| GGATCATCCAGACATTCAGA+AGG | - | chr8_2:56757424-56757443 | Msa1256600:intron | 45.0% | |
| TCATCCAGACATTCAGAAGG+TGG | - | chr8_2:56757427-56757446 | Msa1256600:intron | 45.0% | |
| AAGCGAGAACTGCTATTCCT+TGG | - | chr8_2:56757450-56757469 | Msa1256600:CDS | 45.0% | |
| CAAGCAGGGATCATTTCATG+TGG | - | chr8_2:56757546-56757565 | Msa1256600:intron | 45.0% | |
| TGTGGAATTTCCAGAACCTC+CGG | - | chr8_2:56757564-56757583 | Msa1256600:intron | 45.0% | |
| ! | GAACAATTGGACTAGAGCAC+AGG | - | chr8_2:56757663-56757682 | Msa1256600:intron | 45.0% |
| GACTGAGGCCTTTAGTAGTA+TGG | - | chr8_2:56757902-56757921 | Msa1256600:intron | 45.0% | |
| AGGCCTTTAGTAGTATGGAG+AGG | - | chr8_2:56757907-56757926 | Msa1256600:intron | 45.0% | |
| GGCCTTTAGTAGTATGGAGA+GGG | - | chr8_2:56757908-56757927 | Msa1256600:intron | 45.0% | |
| AGATAGGTCCTTTCTTGGGA+AGG | - | chr8_2:56757938-56757957 | Msa1256600:intron | 45.0% | |
| GATAGGTCCTTTCTTGGGAA+GGG | - | chr8_2:56757939-56757958 | Msa1256600:intron | 45.0% | |
| !! | TCAAATATAAATAAATATAT+TGG | - | chr8_2:56754548-56754567 | Msa1256600:three_prime_UTR | 5.0% |
| GAGCACCTCTCTTGTATACC+CGG | + | chr8_2:56755022-56755041 | None:intergenic | 50.0% | |
| !!! | GGTGTTGCTTTTCGTTGGAG+CGG | - | chr8_2:56755188-56755207 | Msa1256600:intron | 50.0% |
| CCATGCTTCTTCGATGCAGA+AGG | + | chr8_2:56755422-56755441 | None:intergenic | 50.0% | |
| CCTTCTGCATCGAAGAAGCA+TGG | - | chr8_2:56755419-56755438 | Msa1256600:intron | 50.0% | |
| ! | CTGCATCGAAGAAGCATGGA+CGG | - | chr8_2:56755423-56755442 | Msa1256600:intron | 50.0% |
| ! | GTGCAGGTCTTATCAGGATG+CGG | - | chr8_2:56756087-56756106 | Msa1256600:intron | 50.0% |
| ATGGAACATAGGTGCCTGCT+TGG | - | chr8_2:56756338-56756357 | Msa1256600:intron | 50.0% | |
| GAGGCAAACAAATGCCAAGC+AGG | + | chr8_2:56756355-56756374 | None:intergenic | 50.0% | |
| ! | GGCTTTGTGGAGTGTAAGGA+GGG | + | chr8_2:56756472-56756491 | None:intergenic | 50.0% |
| ! | AGGCTTTGTGGAGTGTAAGG+AGG | + | chr8_2:56756473-56756492 | None:intergenic | 50.0% |
| CGAACGTTTACGGACCACAA+AGG | + | chr8_2:56757056-56757075 | None:intergenic | 50.0% | |
| GCTTCCACCTTCTGAATGTC+TGG | + | chr8_2:56757434-56757453 | None:intergenic | 50.0% | |
| TTGGTGAAGGGGATGATCCA+AGG | + | chr8_2:56757470-56757489 | None:intergenic | 50.0% | |
| ! | TGATGGGTGCAACAGCTTCA+CGG | + | chr8_2:56757528-56757547 | None:intergenic | 50.0% |
| ATTTCCAGAACCTCCGGATG+TGG | - | chr8_2:56757570-56757589 | Msa1256600:intron | 50.0% | |
| AACCTCCGGATGTGGATACA+AGG | - | chr8_2:56757578-56757597 | Msa1256600:intron | 50.0% | |
| ACCTCCGGATGTGGATACAA+GGG | - | chr8_2:56757579-56757598 | Msa1256600:intron | 50.0% | |
| GCAACCCTTGTATCCACATC+CGG | + | chr8_2:56757586-56757605 | None:intergenic | 50.0% | |
| AGCACAGGCCTAATCCAAGA+CGG | - | chr8_2:56757678-56757697 | Msa1256600:intron | 50.0% | |
| GAGCATACCCTTCCCAAGAA+AGG | + | chr8_2:56757949-56757968 | None:intergenic | 50.0% | |
| TAGCAAGCGCGCTATACGTT+AGG | - | chr8_2:56758097-56758116 | Msa1256600:five_prime_UTR | 50.0% | |
| ! | TTAGGTTGCCCTAGGCAGTA+AGG | - | chr8_2:56758136-56758155 | Msa1256600:five_prime_UTR | 50.0% |
| TTGCCCTAGGCAGTAAGGTT+TGG | - | chr8_2:56758141-56758160 | Msa1256600:five_prime_UTR | 50.0% | |
| !! | CATGACTGGCCTGAAGCTCT+CGG | - | chr8_2:56755475-56755494 | Msa1256600:intron | 55.0% |
| GATTCAAGGCCGAGAGCTTC+AGG | + | chr8_2:56755487-56755506 | None:intergenic | 55.0% | |
| CTTATCAGGATGCGGACGAG+AGG | - | chr8_2:56756095-56756114 | Msa1256600:intron | 55.0% | |
| TGCAACAGCTTCACGGAGTC+TGG | + | chr8_2:56757521-56757540 | None:intergenic | 55.0% | |
| AGCTGTTGCACCCATCAAGC+AGG | - | chr8_2:56757531-56757550 | Msa1256600:intron | 55.0% | |
| GCTGTTGCACCCATCAAGCA+GGG | - | chr8_2:56757532-56757551 | Msa1256600:intron | 55.0% | |
| GTATCCACATCCGGAGGTTC+TGG | + | chr8_2:56757577-56757596 | None:intergenic | 55.0% | |
| ACCCTTGTATCCACATCCGG+AGG | + | chr8_2:56757583-56757602 | None:intergenic | 55.0% | |
| GGCTTGAGCCGTCTTGGATT+AGG | + | chr8_2:56757689-56757708 | None:intergenic | 55.0% | |
| ! | GATGGTGGCTTGAGCCGTCT+TGG | + | chr8_2:56757695-56757714 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 56754242 | 56758233 | 56754242 | ID=Msa1256600;Name=Msa1256600 |
| chr8_2 | mRNA | 56754242 | 56758233 | 56754242 | ID=Msa1256600-mRNA-1;Parent=Msa1256600;Name=Msa1256600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=208|1|1|1|1|1|10|543|330 |
| chr8_2 | exon | 56754242 | 56755099 | 56754242 | ID=Msa1256600-mRNA-1:exon:17505;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56756347 | 56756427 | 56756347 | ID=Msa1256600-mRNA-1:exon:17504;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56756567 | 56756668 | 56756567 | ID=Msa1256600-mRNA-1:exon:17503;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56756961 | 56757056 | 56756961 | ID=Msa1256600-mRNA-1:exon:17502;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757147 | 56757206 | 56757147 | ID=Msa1256600-mRNA-1:exon:17501;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757302 | 56757355 | 56757302 | ID=Msa1256600-mRNA-1:exon:17500;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757440 | 56757517 | 56757440 | ID=Msa1256600-mRNA-1:exon:17499;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757611 | 56757664 | 56757611 | ID=Msa1256600-mRNA-1:exon:17498;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757762 | 56757845 | 56757762 | ID=Msa1256600-mRNA-1:exon:17497;Parent=Msa1256600-mRNA-1 |
| chr8_2 | exon | 56757957 | 56758233 | 56757957 | ID=Msa1256600-mRNA-1:exon:17496;Parent=Msa1256600-mRNA-1 |
| chr8_2 | five_prime_UTR | 56758026 | 56758233 | 56758026 | ID=Msa1256600-mRNA-1:five_prime_utr;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757957 | 56758025 | 56757957 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757762 | 56757845 | 56757762 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757611 | 56757664 | 56757611 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757440 | 56757517 | 56757440 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757302 | 56757355 | 56757302 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56757147 | 56757206 | 56757147 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56756961 | 56757056 | 56756961 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56756567 | 56756668 | 56756567 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56756347 | 56756427 | 56756347 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | CDS | 56754785 | 56755099 | 56754785 | ID=Msa1256600-mRNA-1:cds;Parent=Msa1256600-mRNA-1 |
| chr8_2 | three_prime_UTR | 56754242 | 56754784 | 56754242 | ID=Msa1256600-mRNA-1:three_prime_utr;Parent=Msa1256600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
