AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0893360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893360 MtrunA17_Chr6g0473931 87.500 200 23 2 1 200 1 198 2.27e-112 318
Msa0893360 MtrunA17_Chr6g0473941 85.167 209 21 2 1 200 1 208 1.17e-108 310
Msa0893360 MtrunA17_Chr6g0474001 76.289 194 40 2 3 195 24 212 1.63e-106 306
Msa0893360 MtrunA17_Chr6g0473961 76.020 196 37 4 7 200 28 215 3.88e-104 298
Msa0893360 MtrunA17_Chr6g0473971 78.173 197 36 2 6 200 27 218 2.93e-103 297
Msa0893360 MtrunA17_Chr6g0473981 74.000 200 44 3 3 200 24 217 5.60e-98 284
Msa0893360 MtrunA17_Chr6g0473881 75.401 187 39 2 5 190 82 262 6.13e-95 278
Msa0893360 MtrunA17_Chr6g0473781 69.458 203 49 4 6 200 30 227 1.00e-92 270
Msa0893360 MtrunA17_Chr6g0473741 70.149 201 54 3 1 200 35 230 8.80e-87 255
Msa0893360 MtrunA17_Chr6g0473861 51.220 246 69 4 5 200 35 279 8.51e-69 211
Msa0893360 MtrunA17_Chr1g0203861 59.296 199 67 4 4 199 15 202 9.11e-67 203
Msa0893360 MtrunA17_Chr5g0398081 45.500 200 80 4 11 190 27 217 1.55e-50 163
Msa0893360 MtrunA17_Chr6g0473771 78.351 97 21 0 10 106 20 116 2.78e-50 158
Msa0893360 MtrunA17_Chr5g0398091 45.729 199 93 4 4 190 25 220 2.78e-47 154
Msa0893360 MtrunA17_Chr5g0398061 47.059 187 84 4 16 190 32 215 2.53e-46 152
Msa0893360 MtrunA17_Chr4g0057231 67.890 109 32 2 3 108 14 122 1.24e-43 142
Msa0893360 MtrunA17_Chr6g0473791 89.333 75 8 0 6 80 30 104 3.28e-43 141
Msa0893360 MtrunA17_Chr7g0265851 46.835 158 76 3 24 173 15 172 3.02e-35 123
Msa0893360 MtrunA17_Chr3g0140161 56.842 95 41 0 28 122 38 132 2.01e-32 115
Msa0893360 MtrunA17_Chr8g0334801 63.750 80 29 0 28 107 47 126 3.28e-32 115
Msa0893360 MtrunA17_Chr7g0275841 60.227 88 35 0 20 107 15 102 9.98e-32 113
Msa0893360 MtrunA17_Chr7g0232261 61.728 81 31 0 27 107 55 135 9.60e-31 112
Msa0893360 MtrunA17_Chr2g0321071 42.073 164 78 5 27 173 41 204 1.51e-30 111
Msa0893360 MtrunA17_Chr5g0399441 60.759 79 31 0 29 107 24 102 1.01e-29 108
Msa0893360 MtrunA17_Chr8g0346741 55.319 94 39 1 17 107 23 116 8.01e-29 105
Msa0893360 MtrunA17_Chr2g0331231 50.407 123 55 2 13 129 15 137 8.88e-29 106
Msa0893360 MtrunA17_Chr8g0340311 60.759 79 31 0 29 107 43 121 1.18e-28 106
Msa0893360 MtrunA17_Chr8g0390091 53.535 99 46 0 23 121 27 125 8.20e-28 104
Msa0893360 MtrunA17_Chr6g0486701 58.974 78 32 0 30 107 41 118 3.83e-27 102
Msa0893360 MtrunA17_Chr4g0055951 58.974 78 32 0 30 107 71 148 8.87e-26 100
Msa0893360 MtrunA17_Chr4g0057241 55.696 79 34 1 29 107 11 88 1.08e-25 97.4
Msa0893360 MtrunA17_Chr6g0486711 58.140 86 36 0 29 114 45 130 9.87e-23 91.7
Msa0893360 MtrunA17_Chr4g0017851 51.807 83 40 0 32 114 117 199 1.47e-22 92.4
Msa0893360 MtrunA17_Chr1g0146191 55.435 92 37 1 20 107 30 121 2.59e-22 90.9
Msa0893360 MtrunA17_Chr5g0396181 43.564 101 55 1 33 131 21 121 2.67e-19 81.6
Msa0893360 MtrunA17_Chr5g0396191 52.174 92 44 0 33 124 11 102 5.63e-19 80.5
Msa0893360 MtrunA17_Chr1g0203831 41.844 141 77 3 33 169 57 196 1.78e-17 77.0
Msa0893360 MtrunA17_Chr3g0134161 39.344 122 66 4 18 137 31 146 4.34e-17 75.1
Msa0893360 MtrunA17_Chr2g0295421 51.515 66 32 0 26 91 89 154 6.56e-17 76.6
Msa0893360 MtrunA17_Chr1g0150631 55.000 60 27 0 32 91 37 96 7.33e-17 75.9
Msa0893360 MtrunA17_Chr8g0382491 43.011 93 48 2 17 104 95 187 1.04e-16 76.3
Msa0893360 MtrunA17_Chr1g0179161 35.260 173 71 7 17 173 3 150 1.25e-16 73.9
Msa0893360 MtrunA17_Chr5g0437671 58.621 58 24 0 33 90 85 142 1.81e-16 76.6
Msa0893360 MtrunA17_Chr3g0136551 43.529 85 48 0 33 117 65 149 3.05e-16 74.7
Msa0893360 MtrunA17_Chr1g0153151 36.364 99 60 1 33 131 44 139 3.97e-16 72.8
Msa0893360 MtrunA17_Chr1g0150671 41.304 92 50 1 32 119 45 136 4.15e-16 74.7
Msa0893360 MtrunA17_Chr8g0383591 56.667 60 26 0 33 92 145 204 6.82e-16 74.3
Msa0893360 MtrunA17_Chr2g0301191 44.706 85 47 0 32 116 18 102 8.62e-16 72.8
Msa0893360 MtrunA17_Chr2g0334031 48.529 68 35 0 21 88 105 172 8.92e-16 74.3
Msa0893360 MtrunA17_Chr7g0221471 50.000 64 32 0 29 92 47 110 1.39e-15 71.2
Msa0893360 MtrunA17_Chr1g0195151 43.478 92 50 1 11 100 53 144 1.47e-15 73.6
Msa0893360 MtrunA17_Chr3g0115631 55.932 59 26 0 32 90 149 207 1.55e-15 73.6
Msa0893360 MtrunA17_Chr1g0150691 50.000 64 32 0 28 91 17 80 1.75e-15 72.0
Msa0893360 MtrunA17_Chr1g0196781 52.381 63 30 0 28 90 147 209 2.04e-15 73.2
Msa0893360 MtrunA17_Chr7g0221501 40.964 83 49 0 29 111 47 129 2.22e-15 70.9
Msa0893360 MtrunA17_Chr5g0425561 55.932 59 26 0 32 90 172 230 2.34e-15 73.2
Msa0893360 MtrunA17_Chr2g0301171 40.659 91 54 0 32 122 18 108 4.07e-15 70.5
Msa0893360 MtrunA17_Chr8g0375031 55.357 56 25 0 33 88 125 180 4.21e-15 70.9
Msa0893360 MtrunA17_Chr2g0324131 55.932 59 26 0 32 90 217 275 5.07e-15 72.4
Msa0893360 MtrunA17_Chr3g0099871 56.250 64 25 1 25 88 22 82 5.76e-15 70.5
Msa0893360 MtrunA17_Chr4g0044911 57.143 56 24 0 33 88 96 151 5.92e-15 70.9
Msa0893360 MtrunA17_Chr3g0136541 43.373 83 47 0 35 117 42 124 6.47e-15 70.9
Msa0893360 MtrunA17_Chr5g0401871 55.357 56 25 0 33 88 25 80 6.91e-15 69.7
Msa0893360 MtrunA17_Chr1g0150661 51.667 60 29 0 32 91 34 93 7.36e-15 70.5
Msa0893360 MtrunA17_Chr2g0316931 57.143 56 24 0 33 88 31 86 1.00e-14 69.7
Msa0893360 MtrunA17_Chr2g0323171 57.143 56 24 0 33 88 65 120 1.45e-14 68.9
Msa0893360 MtrunA17_Chr1g0158971 54.386 57 26 0 33 89 115 171 1.49e-14 70.9
Msa0893360 MtrunA17_Chr5g0437371 58.929 56 23 0 33 88 66 121 1.83e-14 70.5
Msa0893360 MtrunA17_Chr4g0044901 55.357 56 25 0 33 88 96 151 2.31e-14 68.9
Msa0893360 MtrunA17_Chr4g0044871 55.357 56 25 0 33 88 96 151 2.51e-14 68.9
Msa0893360 MtrunA17_Chr7g0225131 53.333 60 25 1 32 91 28 84 2.75e-14 65.9
Msa0893360 MtrunA17_Chr8g0344961 48.485 66 34 0 23 88 114 179 2.83e-14 70.5
Msa0893360 MtrunA17_Chr1g0186731 51.613 62 29 1 33 93 21 82 3.50e-14 67.0
Msa0893360 MtrunA17_Chr4g0044881 55.357 56 25 0 33 88 114 169 4.04e-14 68.6
Msa0893360 MtrunA17_Chr4g0023411 55.357 56 25 0 33 88 65 120 5.27e-14 67.4
Msa0893360 MtrunA17_Chr4g0063751 47.887 71 30 1 33 103 7 70 5.39e-14 67.8
Msa0893360 MtrunA17_Chr2g0283181 49.275 69 34 1 21 88 137 205 7.42e-14 68.6
Msa0893360 MtrunA17_Chr7g0257911 57.143 56 24 0 33 88 31 86 8.22e-14 68.6
Msa0893360 MtrunA17_Chr5g0396911 41.304 92 48 1 3 88 76 167 1.06e-13 68.2
Msa0893360 MtrunA17_Chr2g0297331 53.226 62 28 1 33 93 14 75 1.41e-13 65.1
Msa0893360 MtrunA17_Chr1g0189941 50.000 70 35 0 22 91 13 82 1.61e-13 65.5
Msa0893360 MtrunA17_Chr3g0137174 57.143 56 24 0 33 88 8 63 3.52e-13 65.1
Msa0893360 MtrunA17_Chr2g0282651 53.571 56 26 0 33 88 70 125 3.59e-13 66.2
Msa0893360 MtrunA17_Chr3g0114761 48.315 89 42 2 33 117 25 113 4.69e-13 65.5
Msa0893360 MtrunA17_Chr1g0170531 52.632 57 26 1 33 88 89 145 5.09e-13 65.5
Msa0893360 MtrunA17_Chr4g0003421 53.571 56 26 0 33 88 40 95 5.22e-13 65.5
Msa0893360 MtrunA17_Chr2g0333011 50.000 60 30 0 33 92 7 66 5.67e-13 64.3
Msa0893360 MtrunA17_Chr4g0002631 57.143 56 24 0 33 88 8 63 6.54e-13 64.7
Msa0893360 MtrunA17_Chr1g0184081 52.632 57 26 1 33 88 21 77 7.79e-13 63.2
Msa0893360 MtrunA17_Chr2g0282621 55.357 56 25 0 33 88 15 70 8.36e-13 63.9
Msa0893360 MtrunA17_Chr2g0301181 40.000 85 51 0 32 116 18 102 9.98e-13 64.7
Msa0893360 MtrunA17_Chr1g0186671 54.386 57 25 1 33 88 19 75 1.07e-12 62.8
Msa0893360 MtrunA17_Chr4g0055781 54.386 57 25 1 33 88 102 158 1.09e-12 64.7
Msa0893360 MtrunA17_Chr4g0026881 40.698 86 45 2 8 92 77 157 1.53e-12 64.3
Msa0893360 MtrunA17_Chr1g0186681 50.820 61 28 1 30 88 16 76 1.97e-12 62.0
Msa0893360 MtrunA17_Chr3g0126321 30.667 150 92 2 17 156 89 236 2.19e-12 64.7
Msa0893360 MtrunA17_Chr4g0055801 45.946 74 39 1 16 88 137 210 3.89e-12 63.9
Msa0893360 MtrunA17_Chr5g0438831 44.186 86 38 2 13 98 29 104 6.19e-12 63.2
Msa0893360 MtrunA17_Chr5g0438801 47.945 73 28 2 26 98 47 109 9.16e-12 62.4
Msa0893360 MtrunA17_Chr4g0046161 44.928 69 37 1 21 88 45 113 1.10e-11 59.7
Msa0893360 MtrunA17_Chr5g0396171 44.262 61 34 0 35 95 26 86 1.38e-11 58.5
Msa0893360 MtrunA17_Chr8g0367911 50.000 56 28 0 33 88 44 99 1.51e-11 62.0
Msa0893360 MtrunA17_Chr1g0196871 48.387 62 29 2 28 88 13 72 1.87e-11 58.5
Msa0893360 MtrunA17_Chr4g0062551 44.068 59 33 0 33 91 53 111 2.82e-11 58.9
Msa0893360 MtrunA17_Chr5g0432821 45.000 60 33 0 29 88 120 179 2.88e-11 61.2
Msa0893360 MtrunA17_Chr4g0026931 43.373 83 41 3 11 92 114 191 3.34e-11 60.8
Msa0893360 MtrunA17_Chr8g0387801 44.444 81 36 2 17 88 82 162 5.64e-11 60.5
Msa0893360 MtrunA17_Chr8g0335331 49.123 57 28 1 33 88 125 181 6.56e-11 59.3
Msa0893360 MtrunA17_Chr6g0461271 44.000 75 41 1 18 92 19 92 6.90e-11 60.1
Msa0893360 MtrunA17_Chr4g0062161 44.068 59 33 0 33 91 53 111 8.13e-11 58.9
Msa0893360 MtrunA17_Chr4g0055761 52.632 57 26 1 33 88 145 201 9.56e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893360 AT4G25470.1 54.040 198 73 5 10 199 28 215 3.58e-66 202
Msa0893360 AT4G25480.1 58.011 181 61 3 11 182 29 203 1.01e-60 189
Msa0893360 AT5G51990.1 52.973 185 75 3 10 185 31 212 6.19e-60 187
Msa0893360 AT4G25490.1 58.242 182 60 4 11 182 26 201 1.72e-59 186
Msa0893360 AT1G12610.1 58.571 140 52 1 5 144 2 135 1.97e-53 170
Msa0893360 AT1G63030.2 65.789 114 39 0 6 119 3 116 3.42e-52 166
Msa0893360 AT1G63030.1 65.789 114 39 0 6 119 3 116 3.42e-52 166
Msa0893360 AT5G25810.1 57.447 94 39 1 22 114 24 117 1.82e-32 117
Msa0893360 AT5G11590.1 42.647 136 78 0 29 164 47 182 1.12e-30 112
Msa0893360 AT2G44940.1 59.140 93 38 0 22 114 89 181 1.66e-30 113
Msa0893360 AT4G32800.1 50.467 107 47 1 20 120 6 112 3.57e-30 110
Msa0893360 AT2G35700.1 61.250 80 31 0 28 107 40 119 9.18e-30 109
Msa0893360 AT4G16750.1 48.182 110 52 1 3 107 5 114 1.02e-28 105
Msa0893360 AT1G01250.1 51.887 106 48 1 5 107 14 119 1.58e-28 105
Msa0893360 AT3G16280.1 58.228 79 33 0 29 107 57 135 2.08e-27 104
Msa0893360 AT3G16280.2 58.228 79 33 0 29 107 75 153 3.43e-27 103
Msa0893360 AT2G36450.1 41.139 158 86 4 21 173 3 158 3.70e-26 99.8
Msa0893360 AT5G52020.1 44.937 158 74 4 29 179 61 212 2.80e-25 98.6
Msa0893360 AT3G60490.1 56.098 82 35 1 27 107 64 145 2.88e-25 99.0
Msa0893360 AT2G25820.1 59.211 76 31 0 32 107 25 100 4.05e-25 97.8
Msa0893360 AT1G71450.1 45.283 106 58 0 32 137 23 128 6.69e-22 88.6
Msa0893360 AT1G33760.1 51.685 89 43 0 33 121 20 108 1.80e-19 82.0
Msa0893360 AT1G21910.1 47.312 93 42 1 33 118 50 142 4.51e-19 82.0
Msa0893360 AT2G47520.1 43.023 86 46 1 9 91 23 108 6.03e-19 80.5
Msa0893360 AT1G77200.1 55.844 77 34 0 31 107 41 117 1.50e-18 80.9
Msa0893360 AT1G46768.3 57.143 63 26 1 28 90 27 88 5.84e-18 77.0
Msa0893360 AT1G46768.1 57.143 63 26 1 28 90 27 88 6.15e-18 77.4
Msa0893360 AT1G46768.2 57.143 63 26 1 28 90 27 88 6.15e-18 77.4
Msa0893360 AT1G12630.1 43.243 148 76 2 29 169 15 161 7.88e-18 78.2
Msa0893360 AT4G13620.1 57.627 59 25 0 32 90 231 289 2.29e-17 79.3
Msa0893360 AT3G16770.1 52.778 72 30 1 19 90 69 136 4.41e-17 77.0
Msa0893360 AT4G06746.1 53.226 62 29 0 33 94 36 97 7.85e-17 74.3
Msa0893360 AT1G22190.1 52.055 73 33 1 18 90 70 140 9.02e-17 76.6
Msa0893360 AT2G22200.1 48.000 75 37 1 32 104 70 144 9.20e-17 76.6
Msa0893360 AT1G74930.1 43.023 86 49 0 33 118 21 106 1.15e-16 75.1
Msa0893360 AT4G39780.1 55.738 61 27 0 28 88 88 148 1.16e-16 76.3
Msa0893360 AT3G50260.1 38.739 111 56 3 26 136 14 112 1.72e-16 73.6
Msa0893360 AT5G21960.1 46.429 84 45 0 31 114 5 88 1.90e-16 74.7
Msa0893360 AT5G65130.1 50.649 77 36 1 18 92 94 170 2.20e-16 75.9
Msa0893360 AT5G65130.2 50.649 77 36 1 18 92 96 172 2.39e-16 75.5
Msa0893360 AT2G23340.1 38.462 104 59 1 33 136 28 126 3.13e-16 73.6
Msa0893360 AT3G11020.1 54.545 66 30 0 27 92 72 137 5.00e-16 75.5
Msa0893360 AT4G36900.1 55.000 60 27 0 29 88 26 85 5.57e-16 73.2
Msa0893360 AT2G33710.1 46.835 79 37 1 28 101 65 143 1.55e-15 72.4
Msa0893360 AT2G33710.2 45.122 82 40 1 28 104 65 146 1.72e-15 72.4
Msa0893360 AT1G78080.1 55.932 59 26 0 32 90 151 209 1.74e-15 73.9
Msa0893360 AT5G67190.1 55.357 56 25 0 33 88 21 76 1.81e-15 71.6
Msa0893360 AT1G19210.1 35.652 115 74 0 33 147 12 126 2.94e-15 70.9
Msa0893360 AT5G05410.2 55.932 59 26 0 33 91 79 137 6.74e-15 72.0
Msa0893360 AT5G05410.1 57.143 56 24 0 33 88 79 134 8.53e-15 72.0
Msa0893360 AT1G36060.1 57.895 57 24 0 32 88 142 198 9.40e-15 71.6
Msa0893360 AT4G28140.1 52.542 59 28 0 32 90 142 200 1.14e-14 71.2
Msa0893360 AT2G20880.1 56.140 57 25 0 32 88 186 242 1.35e-14 71.2
Msa0893360 AT3G15210.1 57.143 56 24 0 33 88 25 80 1.55e-14 69.7
Msa0893360 AT5G13330.1 51.562 64 29 1 29 92 37 98 2.34e-14 69.3
Msa0893360 AT1G71520.1 33.333 141 72 5 27 161 8 132 2.35e-14 67.8
Msa0893360 AT5G44210.1 55.357 56 25 0 33 88 33 88 4.17e-14 68.2
Msa0893360 AT3G57600.1 48.611 72 37 0 17 88 12 83 4.60e-14 69.3
Msa0893360 AT5G61890.1 51.562 64 29 1 29 92 88 149 4.87e-14 68.9
Msa0893360 AT5G61600.1 57.377 61 23 2 29 88 86 144 5.20e-14 68.6
Msa0893360 AT5G07580.1 46.835 79 39 2 27 104 106 182 7.64e-14 67.8
Msa0893360 AT5G64750.1 39.130 92 50 2 43 134 195 280 8.03e-14 69.3
Msa0893360 AT1G03800.1 48.529 68 32 1 21 88 44 108 9.43e-14 68.2
Msa0893360 AT1G22810.1 38.710 93 42 2 33 117 14 99 9.62e-14 65.9
Msa0893360 AT1G75490.1 45.833 72 39 0 32 103 41 112 1.04e-13 67.4
Msa0893360 AT5G51190.1 53.968 63 26 2 27 88 68 128 1.27e-13 67.4
Msa0893360 AT1G15360.1 55.357 56 25 0 33 88 7 62 1.71e-13 66.6
Msa0893360 AT1G15360.2 55.357 56 25 0 33 88 7 62 1.71e-13 66.6
Msa0893360 AT1G72360.3 42.105 76 44 0 13 88 54 129 1.92e-13 67.4
Msa0893360 AT5G47230.1 50.000 72 35 1 18 88 141 212 2.02e-13 67.8
Msa0893360 AT1G72360.1 46.032 63 34 0 26 88 18 80 2.04e-13 66.6
Msa0893360 AT5G43410.1 51.667 60 28 1 30 88 12 71 2.12e-13 64.7
Msa0893360 AT1G43160.1 36.154 130 72 3 33 162 61 179 2.65e-13 65.9
Msa0893360 AT4G11140.1 51.786 56 27 0 33 88 87 142 2.89e-13 67.4
Msa0893360 AT4G27950.1 52.632 57 27 0 33 89 118 174 2.91e-13 67.4
Msa0893360 AT1G72360.2 46.032 63 34 0 26 88 69 131 4.77e-13 66.2
Msa0893360 AT4G31060.1 40.244 82 45 1 11 88 1 82 5.77e-13 65.1
Msa0893360 AT3G23230.1 48.387 62 31 1 33 93 20 81 6.58e-13 63.5
Msa0893360 AT3G61630.1 44.304 79 38 1 33 111 105 177 6.89e-13 66.2
Msa0893360 AT5G25390.2 51.786 56 27 0 33 88 7 62 8.11e-13 64.7
Msa0893360 AT5G18450.1 45.000 80 40 1 9 88 14 89 1.11e-12 65.9
Msa0893360 AT3G20310.1 50.000 62 31 0 27 88 21 82 1.94e-12 64.3
Msa0893360 AT5G25190.1 55.357 56 25 0 33 88 8 63 3.16e-12 62.8
Msa0893360 AT5G53290.1 50.877 57 28 0 33 89 125 181 3.45e-12 64.7
Msa0893360 AT1G28370.1 51.786 56 27 0 33 88 20 75 3.48e-12 62.4
Msa0893360 AT1G28360.1 55.357 56 25 0 33 88 12 67 4.34e-12 62.8
Msa0893360 AT1G28370.2 51.786 56 27 0 33 88 58 113 5.95e-12 62.4
Msa0893360 AT4G23750.2 49.123 57 29 0 33 89 122 178 9.33e-12 63.2
Msa0893360 AT4G23750.1 49.123 57 29 0 33 89 122 178 9.33e-12 63.2
Msa0893360 AT4G17490.1 52.381 63 27 2 27 88 133 193 1.08e-11 62.8
Msa0893360 AT1G50640.1 53.571 56 26 0 33 88 28 83 1.08e-11 62.0
Msa0893360 AT2G40350.2 51.786 56 27 0 33 88 74 129 1.29e-11 60.8
Msa0893360 AT5G47220.1 52.632 57 26 1 33 88 117 173 1.39e-11 62.0
Msa0893360 AT2G40340.2 50.000 56 28 0 33 88 14 69 1.47e-11 62.4
Msa0893360 AT2G40340.5 50.000 56 28 0 33 88 14 69 1.47e-11 62.4
Msa0893360 AT2G40340.4 50.000 56 28 0 33 88 14 69 1.47e-11 62.4
Msa0893360 AT2G40350.1 51.786 56 27 0 33 88 67 122 1.50e-11 60.5
Msa0893360 AT1G77640.1 44.444 90 44 1 33 116 43 132 1.76e-11 61.6
Msa0893360 AT2G46310.1 48.214 56 29 0 33 88 99 154 2.26e-11 62.0
Msa0893360 AT5G19790.1 50.000 58 29 0 33 90 22 79 2.29e-11 61.6
Msa0893360 AT2G40340.3 50.000 56 28 0 33 88 72 127 2.54e-11 61.6
Msa0893360 AT2G40340.1 50.000 56 28 0 33 88 72 127 2.80e-11 62.0
Msa0893360 AT5G61590.1 56.716 67 26 2 23 88 99 163 3.15e-11 60.5
Msa0893360 AT2G40340.6 50.000 56 28 0 33 88 79 134 3.30e-11 61.6
Msa0893360 AT1G12890.1 42.308 78 42 1 11 88 2 76 4.39e-11 60.5

Find 62 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTGCTTCAATGGCATTA+AGG 0.227810 6_1:+76954229 Msa0893360:CDS
GGAAGAGGAACTTAGATAAA+TGG 0.259157 6_1:+76954121 Msa0893360:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6_1:-76954162 None:intergenic
AGCAGGGAGGAAGAAGTTTA+AGG 0.309502 6_1:+76954068 Msa0893360:CDS
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6_1:+76954494 Msa0893360:CDS
AGACTCGCCACCCGGTATAT+AGG 0.350439 6_1:+76954091 Msa0893360:CDS
ATCTGCAGAGTTTAACTAGT+TGG 0.380472 6_1:+76957319 Msa0893360:intron
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6_1:-76954205 None:intergenic
GAAGAGGAACTTAGATAAAT+GGG 0.403807 6_1:+76954122 Msa0893360:CDS
TTAAACTTCTTCCTCCCTGC+TGG 0.404819 6_1:-76954066 None:intergenic
TGTTGCTTCAATGGCATTAA+GGG 0.407611 6_1:+76954230 Msa0893360:CDS
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6_1:+76954200 Msa0893360:CDS
TTGTAAACATATCTATGTAT+TGG 0.410668 6_1:-76953999 None:intergenic
GCCTCAGCGGTGGCAGGAAT+AGG 0.415517 6_1:-76954297 None:intergenic
CAAACAAGAAGACTAAGATT+TGG 0.423028 6_1:+76954163 Msa0893360:CDS
CTGTCTCAACTTTGCAGACT+CGG 0.436160 6_1:+76954263 Msa0893360:CDS
AATGTCCCCTACACATAGTA+TGG 0.442156 6_1:+76954521 Msa0893360:CDS
GGCAGCTGCAGAAGCTGCCG+AGG 0.451466 6_1:+76954335 Msa0893360:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6_1:+76954221 Msa0893360:CDS
ATATGTTTACAAGTAACAAC+GGG 0.454775 6_1:+76954010 Msa0893360:exon
ATAAATGGGTTTGTGAAATG+AGG 0.462024 6_1:+76954136 Msa0893360:CDS
TTCCTCACACCCCTATATAC+CGG 0.471420 6_1:-76954102 None:intergenic
CTAGTCATTAAAGTCTTGTC+TGG 0.471563 6_1:-76954366 None:intergenic
TGTTGAAGTCGAAGAAGAAG+AGG 0.476444 6_1:+76954458 Msa0893360:CDS
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6_1:-76954198 None:intergenic
AGTACAAGACTTTCAATATG+AGG 0.490333 6_1:+76954566 Msa0893360:CDS
CATGCTCCATACTATGTGTA+GGG 0.491173 6_1:-76954527 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6_1:-76954218 None:intergenic
CTGAGGCAAAAGACATTCAA+AGG 0.499259 6_1:+76954313 Msa0893360:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6_1:+76954106 Msa0893360:CDS
TAAATGGGTTTGTGAAATGA+GGG 0.505569 6_1:+76954137 Msa0893360:CDS
TGTTAAGAGAGTGAAGAGTA+AGG 0.505636 6_1:-76953916 None:intergenic
GCCATATTCCTCCACAACTC+TGG 0.506491 6_1:-76954495 None:intergenic
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6_1:+76954199 Msa0893360:CDS
TCATGCTCCATACTATGTGT+AGG 0.541468 6_1:-76954528 None:intergenic
CGAGTCTGCAAAGTTGAGAC+AGG 0.558907 6_1:-76954262 None:intergenic
TTACAAGTAACAACGGGGAG+GGG 0.563550 6_1:+76954016 Msa0893360:CDS
TGAGGCAAAAGACATTCAAA+GGG 0.575611 6_1:+76954314 Msa0893360:CDS
TGAAGCAACATCATGTGCCC+GGG 0.576327 6_1:-76954217 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6_1:+76954168 Msa0893360:CDS
TCCTATTCCTGCCACCGCTG+AGG 0.581983 6_1:+76954296 Msa0893360:CDS
CTTGTCTGGTCTGAAAGCCT+CGG 0.583680 6_1:-76954352 None:intergenic
TCCTCACACCCCTATATACC+GGG 0.585609 6_1:-76954101 None:intergenic
TTTACAAGTAACAACGGGGA+GGG 0.587349 6_1:+76954015 Msa0893360:CDS
CAAGTAACAACGGGGAGGGG+CGG 0.588787 6_1:+76954019 Msa0893360:CDS
TAGTGACATTGACACGGTTG+TGG 0.591596 6_1:+76954386 Msa0893360:CDS
TCAACTTTGCAGACTCGGTG+TGG 0.601701 6_1:+76954268 Msa0893360:CDS
TGTGGCTGTTGTCGTTGCAG+TGG 0.604136 6_1:+76954404 Msa0893360:CDS
ACTTTGCAGACTCGGTGTGG+AGG 0.609381 6_1:+76954271 Msa0893360:CDS
GTTGCTTCAATGGCATTAAG+GGG 0.609844 6_1:+76954231 Msa0893360:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6_1:+76954484 Msa0893360:CDS
GATGGTGCTCAAGATAGAGT+TGG 0.617366 6_1:-76953946 None:intergenic
TGTCGTTGCAGTGGAAGAAG+AGG 0.624573 6_1:+76954413 Msa0893360:CDS
GATATGTTTACAAGTAACAA+CGG 0.629910 6_1:+76954009 Msa0893360:exon
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6_1:+76954100 Msa0893360:CDS
AATGACTAGTGACATTGACA+CGG 0.673366 6_1:+76954380 Msa0893360:CDS
ACAAGACTTTCAATATGAGG+AGG 0.676699 6_1:+76954569 Msa0893360:CDS
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6_1:+76954487 Msa0893360:CDS
GTTTACAAGTAACAACGGGG+AGG 0.703815 6_1:+76954014 Msa0893360:CDS
ATGCTCCATACTATGTGTAG+GGG 0.710393 6_1:-76954526 None:intergenic
TCACACCCCTATATACCGGG+TGG 0.772358 6_1:-76954098 None:intergenic
TATGTTTACAAGTAACAACG+GGG 0.831032 6_1:+76954011 Msa0893360:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAGAAAAAGAAAA+AGG - chr6_1:76957138-76957157 None:intergenic 10.0%
!! TTTAAGAAAAGAAATAAAAA+AGG - chr6_1:76957217-76957236 None:intergenic 10.0%
!!! CTACAATCTAAAATAAAAAA+TGG - chr6_1:76954633-76954652 None:intergenic 15.0%
!!! TTTTATTTTAGATTGTAGTA+TGG + chr6_1:76954635-76954654 Msa0893360:intron 15.0%
!! TGTAGGTATTAAAAAAATTT+CGG + chr6_1:76955004-76955023 Msa0893360:intron 15.0%
!! TTGTAAACATATCTATGTAT+TGG - chr6_1:76954002-76954021 None:intergenic 20.0%
!!! TACTACAATCTTTTTTTGAT+TGG + chr6_1:76954668-76954687 Msa0893360:intron 20.0%
!!! AATGTGTTTTTACACAATTT+TGG + chr6_1:76954710-76954729 Msa0893360:intron 20.0%
!! AAAGTAAATCTTCAAATTGA+AGG - chr6_1:76954784-76954803 None:intergenic 20.0%
!! TCATCTAATACTACAAAATA+AGG + chr6_1:76954871-76954890 Msa0893360:intron 20.0%
!!! ATTAGCTTAAATTAAGTTGA+AGG + chr6_1:76954935-76954954 Msa0893360:intron 20.0%
!! TTGAATTGAGATTTCTTATT+TGG - chr6_1:76955808-76955827 None:intergenic 20.0%
!! TTATGTTTAATTGTGAATTG+TGG - chr6_1:76956047-76956066 None:intergenic 20.0%
!! TTATGTTGATGTATATATGT+TGG - chr6_1:76956484-76956503 None:intergenic 20.0%
!!! TTTAAAATACGGACAAAAAT+AGG - chr6_1:76956671-76956690 None:intergenic 20.0%
!!! TTTTTGTCCGTATTTTAAAA+CGG + chr6_1:76956672-76956691 Msa0893360:intron 20.0%
!!! AACTTAATTAAAAGCTTTGA+CGG - chr6_1:76956890-76956909 None:intergenic 20.0%
!!! TGATAATGAAACTAAAAGAA+AGG - chr6_1:76957096-76957115 None:intergenic 20.0%
!! TTAAAAATTGTACCAAAAAG+AGG - chr6_1:76957191-76957210 None:intergenic 20.0%
!!! TTTCTTAAAATCCTTTTCTT+TGG + chr6_1:76957228-76957247 Msa0893360:intron 20.0%
!!! TTCTTAAAATCCTTTTCTTT+GGG + chr6_1:76957229-76957248 Msa0893360:intron 20.0%
! GTATTGGAAAAATATGAAAG+AGG - chr6_1:76953986-76954005 None:intergenic 25.0%
! GATATGTTTACAAGTAACAA+CGG + chr6_1:76954009-76954028 Msa0893360:exon 25.0%
! ATATGTTTACAAGTAACAAC+GGG + chr6_1:76954010-76954029 Msa0893360:exon 25.0%
!!! CAATCTTTTTTTGATTGGTA+TGG + chr6_1:76954673-76954692 Msa0893360:intron 25.0%
! GGAAAACAATAATTAAAACC+TGG - chr6_1:76954763-76954782 None:intergenic 25.0%
!! ATACTACAAAATAAGGCATT+TGG + chr6_1:76954878-76954897 Msa0893360:intron 25.0%
!! AGATTTCAACTTTTGACATT+TGG + chr6_1:76954908-76954927 Msa0893360:intron 25.0%
!! TTTTTGTGAATACTCGAAAA+AGG - chr6_1:76956176-76956195 None:intergenic 25.0%
! TCATACTTGAATATGTGAAT+CGG - chr6_1:76956228-76956247 None:intergenic 25.0%
! CATTGCATGCATTTAATAAT+TGG - chr6_1:76956260-76956279 None:intergenic 25.0%
!!! ATTGGTGATGTTTATTATGT+TGG - chr6_1:76956351-76956370 None:intergenic 25.0%
!!! ATGCATTCATAGTTGTTTTA+AGG - chr6_1:76956427-76956446 None:intergenic 25.0%
!! ATGTTGGTGAAAAACATAAT+TGG - chr6_1:76956516-76956535 None:intergenic 25.0%
!!! GTATTTGATAATGCAAATGT+TGG - chr6_1:76956532-76956551 None:intergenic 25.0%
!!! AATTGAGCCGTTTTAAAATA+CGG - chr6_1:76956682-76956701 None:intergenic 25.0%
!! ATTGCATTATTTGTCTTTTC+AGG + chr6_1:76956809-76956828 Msa0893360:intron 25.0%
! AGCAATTTCAGTCAAAATTT+CGG + chr6_1:76956966-76956985 Msa0893360:intron 25.0%
! AGAATAATAAAATGCCCTTT+CGG - chr6_1:76957021-76957040 None:intergenic 25.0%
!! AATTCTTAACTTCCTCTTTT+TGG + chr6_1:76957176-76957195 Msa0893360:intron 25.0%
!!! ATATGAAAGAGGTTTTGAGA+TGG - chr6_1:76953975-76953994 None:intergenic 30.0%
TATGTTTACAAGTAACAACG+GGG + chr6_1:76954011-76954030 Msa0893360:exon 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6_1:76954122-76954141 Msa0893360:CDS 30.0%
! ATAAATGGGTTTGTGAAATG+AGG + chr6_1:76954136-76954155 Msa0893360:CDS 30.0%
! TAAATGGGTTTGTGAAATGA+GGG + chr6_1:76954137-76954156 Msa0893360:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6_1:76954165-76954184 None:intergenic 30.0%
CAAACAAGAAGACTAAGATT+TGG + chr6_1:76954163-76954182 Msa0893360:CDS 30.0%
AGTACAAGACTTTCAATATG+AGG + chr6_1:76954566-76954585 Msa0893360:CDS 30.0%
! ACTTCTAATGTTGAAGTGTT+TGG + chr6_1:76954604-76954623 Msa0893360:intron 30.0%
! AATCTTCTCTTCTCTTTTGT+AGG + chr6_1:76954987-76955006 Msa0893360:intron 30.0%
ATGAAGTTAAATCATTACCC+CGG + chr6_1:76955084-76955103 Msa0893360:intron 30.0%
!! TCAACAACTTGTTACTGTTT+CGG - chr6_1:76955507-76955526 None:intergenic 30.0%
!! ACGTGATTTAGTTTAGGTTT+TGG + chr6_1:76955580-76955599 Msa0893360:intron 30.0%
!! TGATTTAGTTTAGGTTTTGG+AGG + chr6_1:76955583-76955602 Msa0893360:intron 30.0%
!! TTTATCGCTTTAAGGGTTTA+GGG - chr6_1:76955621-76955640 None:intergenic 30.0%
!! ATTTATCGCTTTAAGGGTTT+AGG - chr6_1:76955622-76955641 None:intergenic 30.0%
TGCGTAATTTATCGCTTTAA+GGG - chr6_1:76955628-76955647 None:intergenic 30.0%
TTGCGTAATTTATCGCTTTA+AGG - chr6_1:76955629-76955648 None:intergenic 30.0%
TAATTTCTCAAACATTGCAG+TGG + chr6_1:76955709-76955728 Msa0893360:intron 30.0%
TGATTATGTACAAGACTACT+TGG - chr6_1:76955775-76955794 None:intergenic 30.0%
! TGTCTGTTTATTTGCCTTTT+TGG - chr6_1:76955859-76955878 None:intergenic 30.0%
TATTCTTATGAATGGGTAGA+CGG - chr6_1:76955987-76956006 None:intergenic 30.0%
TCTACCCATTCATAAGAATA+AGG + chr6_1:76955987-76956006 Msa0893360:intron 30.0%
CCTACCTTATTCTTATGAAT+GGG - chr6_1:76955994-76956013 None:intergenic 30.0%
ACCTACCTTATTCTTATGAA+TGG - chr6_1:76955995-76956014 None:intergenic 30.0%
ATTCATAAGAATAAGGTAGG+TGG + chr6_1:76955994-76956013 Msa0893360:intron 30.0%
TATGCAAGTACAATCAATCA+AGG + chr6_1:76956139-76956158 Msa0893360:intron 30.0%
ATTAACGGTAAGATTATCTC+CGG - chr6_1:76956321-76956340 None:intergenic 30.0%
!! TATGTTGGTGGATTCATTAA+CGG - chr6_1:76956336-76956355 None:intergenic 30.0%
TAGCTTCTGCAAAACATAAT+TGG - chr6_1:76956369-76956388 None:intergenic 30.0%
GGTGAATTGAAGAATGTAAT+TGG - chr6_1:76956406-76956425 None:intergenic 30.0%
!! ATGATGATTTGTTGTTCGTA+TGG - chr6_1:76956561-76956580 None:intergenic 30.0%
!! GATCGTGATGATGATTATTT+TGG - chr6_1:76956605-76956624 None:intergenic 30.0%
ATAGCAAAGTGGTCAAAATT+GGG - chr6_1:76956641-76956660 None:intergenic 30.0%
AATTTCAACTAGATAAAGCG+CGG - chr6_1:76956792-76956811 None:intergenic 30.0%
!! CGAACAAAACTCTTTTAAAG+CGG - chr6_1:76956922-76956941 None:intergenic 30.0%
!!! GAAATTTTGACTGAAATTGC+TGG - chr6_1:76956967-76956986 None:intergenic 30.0%
AAAATACCTCATTTACCGAA+AGG + chr6_1:76957003-76957022 Msa0893360:intron 30.0%
AAATACCTCATTTACCGAAA+GGG + chr6_1:76957004-76957023 Msa0893360:intron 30.0%
TGTTAAGAGAGTGAAGAGTA+AGG - chr6_1:76953919-76953938 None:intergenic 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_1:76954121-76954140 Msa0893360:CDS 35.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6_1:76954168-76954187 Msa0893360:CDS 35.0%
! ATGTTGCTTCAATGGCATTA+AGG + chr6_1:76954229-76954248 Msa0893360:CDS 35.0%
! TGTTGCTTCAATGGCATTAA+GGG + chr6_1:76954230-76954249 Msa0893360:CDS 35.0%
TGAGGCAAAAGACATTCAAA+GGG + chr6_1:76954314-76954333 Msa0893360:CDS 35.0%
! CTAGTCATTAAAGTCTTGTC+TGG - chr6_1:76954369-76954388 None:intergenic 35.0%
AATGACTAGTGACATTGACA+CGG + chr6_1:76954380-76954399 Msa0893360:CDS 35.0%
ACAAGACTTTCAATATGAGG+AGG + chr6_1:76954569-76954588 Msa0893360:CDS 35.0%
!! AATATGAGGAGGTATCACTA+TGG + chr6_1:76954580-76954599 Msa0893360:intron 35.0%
!! ACAGACACCGTTTATTTCTA+CGG + chr6_1:76954735-76954754 Msa0893360:intron 35.0%
TGAAGTTAAATCATTACCCC+GGG + chr6_1:76955085-76955104 Msa0893360:intron 35.0%
ATAGATGGTGACAATGGTAA+TGG + chr6_1:76955149-76955168 Msa0893360:intron 35.0%
! ATCGCAACGTGATTTAGTTT+AGG + chr6_1:76955574-76955593 Msa0893360:intron 35.0%
AAAATCTCTCCAAGCCAAAA+AGG + chr6_1:76955842-76955861 Msa0893360:intron 35.0%
!!! GTTTATTTGCCTTTTTGGCT+TGG - chr6_1:76955854-76955873 None:intergenic 35.0%
TAAGACTCCAAAAGCAAATG+AGG + chr6_1:76955905-76955924 Msa0893360:intron 35.0%
CCCATTCATAAGAATAAGGT+AGG + chr6_1:76955991-76956010 Msa0893360:intron 35.0%
! ATATGTGCATTGGTGAACTT+TGG - chr6_1:76956202-76956221 None:intergenic 35.0%
AGATTATCTCCGGAATCTTA+TGG - chr6_1:76956311-76956330 None:intergenic 35.0%
GGTGATGTTTATTATGTTGG+TGG - chr6_1:76956348-76956367 None:intergenic 35.0%
TAGCAAAGTGGTCAAAATTG+GGG - chr6_1:76956640-76956659 None:intergenic 35.0%
CATAGCAAAGTGGTCAAAAT+TGG - chr6_1:76956642-76956661 None:intergenic 35.0%
TAGGTAAGAACATAGCAAAG+TGG - chr6_1:76956652-76956671 None:intergenic 35.0%
!! CGACTGAGAAAGATTTTAAC+TGG - chr6_1:76956724-76956743 None:intergenic 35.0%
!! ATCACATAATAATGGACAGC+TGG - chr6_1:76957270-76957289 None:intergenic 35.0%
CACAAGGGATCACATAATAA+TGG - chr6_1:76957278-76957297 None:intergenic 35.0%
TTATTATGTGATCCCTTGTG+AGG + chr6_1:76957278-76957297 Msa0893360:intron 35.0%
TATTATGTGATCCCTTGTGA+GGG + chr6_1:76957279-76957298 Msa0893360:intron 35.0%
ATCTGCAGAGTTTAACTAGT+TGG + chr6_1:76957319-76957338 Msa0893360:intron 35.0%
!!! GAAAGAGGTTTTGAGATGGA+AGG - chr6_1:76953971-76953990 None:intergenic 40.0%
TTTACAAGTAACAACGGGGA+GGG + chr6_1:76954015-76954034 Msa0893360:CDS 40.0%
GTTGCTTCAATGGCATTAAG+GGG + chr6_1:76954231-76954250 Msa0893360:CDS 40.0%
! TTGAATGTCTTTTGCCTCAG+CGG - chr6_1:76954313-76954332 None:intergenic 40.0%
CTGAGGCAAAAGACATTCAA+AGG + chr6_1:76954313-76954332 Msa0893360:CDS 40.0%
TGTTGAAGTCGAAGAAGAAG+AGG + chr6_1:76954458-76954477 Msa0893360:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6_1:76954484-76954503 Msa0893360:CDS 40.0%
AATGTCCCCTACACATAGTA+TGG + chr6_1:76954521-76954540 Msa0893360:CDS 40.0%
ATGCTCCATACTATGTGTAG+GGG - chr6_1:76954529-76954548 None:intergenic 40.0%
CATGCTCCATACTATGTGTA+GGG - chr6_1:76954530-76954549 None:intergenic 40.0%
TCATGCTCCATACTATGTGT+AGG - chr6_1:76954531-76954550 None:intergenic 40.0%
CCTGGAACCGTAGAAATAAA+CGG - chr6_1:76954745-76954764 None:intergenic 40.0%
AAATTTCGGCTGCAATGACT+TGG + chr6_1:76955018-76955037 Msa0893360:intron 40.0%
AAGTCGGTATGAGAAATGAG+AGG + chr6_1:76955251-76955270 Msa0893360:intron 40.0%
! AGGTGTGTGTAAGAAAGTGT+GGG + chr6_1:76955271-76955290 Msa0893360:intron 40.0%
GGAAAGTGAATCATACCTTG+AGG + chr6_1:76955292-76955311 Msa0893360:intron 40.0%
AAGCAAGGTCACCCTTATAT+TGG + chr6_1:76955318-76955337 Msa0893360:intron 40.0%
CCATACACGTGCCAATATAA+GGG - chr6_1:76955332-76955351 None:intergenic 40.0%
ACCATACACGTGCCAATATA+AGG - chr6_1:76955333-76955352 None:intergenic 40.0%
CTAATCCCATAGTGACAAGT+GGG - chr6_1:76955471-76955490 None:intergenic 40.0%
TAGAGTCAGGCTTCGATTTA+GGG - chr6_1:76955887-76955906 None:intergenic 40.0%
TTAGAGTCAGGCTTCGATTT+AGG - chr6_1:76955888-76955907 None:intergenic 40.0%
GAATCGGTGTATATGTGCAT+TGG - chr6_1:76956212-76956231 None:intergenic 40.0%
CATGTGGTACCATAAGATTC+CGG + chr6_1:76956299-76956318 Msa0893360:intron 40.0%
!!! CTCTTTTAAAGCGGCAACAA+GGG - chr6_1:76956913-76956932 None:intergenic 40.0%
!!! ACTCTTTTAAAGCGGCAACA+AGG - chr6_1:76956914-76956933 None:intergenic 40.0%
AAATGCCCTTTCGGTAAATG+AGG - chr6_1:76957012-76957031 None:intergenic 40.0%
AAAGCTTGGACCCAAAGAAA+AGG - chr6_1:76957242-76957261 None:intergenic 40.0%
AGACAACAATACCCTCACAA+GGG - chr6_1:76957293-76957312 None:intergenic 40.0%
AAGACAACAATACCCTCACA+AGG - chr6_1:76957294-76957313 None:intergenic 40.0%
GATGGTGCTCAAGATAGAGT+TGG - chr6_1:76953949-76953968 None:intergenic 45.0%
!!! GAGGTTTTGAGATGGAAGGA+TGG - chr6_1:76953967-76953986 None:intergenic 45.0%
GTTTACAAGTAACAACGGGG+AGG + chr6_1:76954014-76954033 Msa0893360:CDS 45.0%
TTACAAGTAACAACGGGGAG+GGG + chr6_1:76954016-76954035 Msa0893360:CDS 45.0%
!!! TGGTTTTTTTGGGCAACTCG+CGG - chr6_1:76954049-76954068 None:intergenic 45.0%
AGTTGCCCAAAAAAACCAGC+AGG + chr6_1:76954051-76954070 Msa0893360:CDS 45.0%
GTTGCCCAAAAAAACCAGCA+GGG + chr6_1:76954052-76954071 Msa0893360:CDS 45.0%
!!! TCCTCCCTGCTGGTTTTTTT+GGG - chr6_1:76954059-76954078 None:intergenic 45.0%
!!! TTCCTCCCTGCTGGTTTTTT+TGG - chr6_1:76954060-76954079 None:intergenic 45.0%
TTAAACTTCTTCCTCCCTGC+TGG - chr6_1:76954069-76954088 None:intergenic 45.0%
AGCAGGGAGGAAGAAGTTTA+AGG + chr6_1:76954068-76954087 Msa0893360:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6_1:76954105-76954124 None:intergenic 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6_1:76954106-76954125 Msa0893360:CDS 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6_1:76954221-76954240 None:intergenic 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6_1:76954221-76954240 Msa0893360:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + chr6_1:76954263-76954282 Msa0893360:CDS 45.0%
TAGTGACATTGACACGGTTG+TGG + chr6_1:76954386-76954405 Msa0893360:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6_1:76954487-76954506 Msa0893360:CDS 45.0%
!! CCGTTTATTTCTACGGTTCC+AGG + chr6_1:76954742-76954761 Msa0893360:intron 45.0%
!!! TAACGGACTACTTTTGACCC+GGG - chr6_1:76955105-76955124 None:intergenic 45.0%
!!! CTAACGGACTACTTTTGACC+CGG - chr6_1:76955106-76955125 None:intergenic 45.0%
GGACGGATCAGTTACACTAA+CGG - chr6_1:76955122-76955141 None:intergenic 45.0%
TTGTCACCATCTATTCCCAC+TGG - chr6_1:76955143-76955162 None:intergenic 45.0%
GTGGGAATAGATGGTGACAA+TGG + chr6_1:76955143-76955162 Msa0893360:intron 45.0%
!! ATGGTAATGGCATAGTGCTC+TGG + chr6_1:76955162-76955181 Msa0893360:intron 45.0%
TTAGCACTCGACGATCAAGT+CGG + chr6_1:76955235-76955254 Msa0893360:intron 45.0%
GAGGTGTGTGTAAGAAAGTG+TGG + chr6_1:76955270-76955289 Msa0893360:intron 45.0%
CATACCTTGAGGATGAAGCA+AGG + chr6_1:76955303-76955322 Msa0893360:intron 45.0%
CCCTTATATTGGCACGTGTA+TGG + chr6_1:76955329-76955348 Msa0893360:intron 45.0%
TCAGGCGATGTTCCTTAAGT+CGG + chr6_1:76955434-76955453 Msa0893360:intron 45.0%
CTTTGCCCACTTGTCACTAT+GGG + chr6_1:76955463-76955482 Msa0893360:intron 45.0%
GCTAATCCCATAGTGACAAG+TGG - chr6_1:76955472-76955491 None:intergenic 45.0%
!! TCACTATGGGATTAGCCTCA+TGG + chr6_1:76955476-76955495 Msa0893360:intron 45.0%
!! TATGGGATTAGCCTCATGGT+CGG + chr6_1:76955480-76955499 Msa0893360:intron 45.0%
AGAGTCAGGCTTCGATTTAG+GGG - chr6_1:76955886-76955905 None:intergenic 45.0%
!!! GCTTTTGGAGTCTTAGAGTC+AGG - chr6_1:76955900-76955919 None:intergenic 45.0%
! GGAGCTACCTCATTTGCTTT+TGG - chr6_1:76955915-76955934 None:intergenic 45.0%
CATGAGTAGTTGCCTTAGCT+TGG - chr6_1:76955960-76955979 None:intergenic 45.0%
TAGACTCGTCTAGATGCATG+TGG + chr6_1:76956283-76956302 Msa0893360:intron 45.0%
TGAAATTGCTGGAAGAACGC+GGG - chr6_1:76956956-76956975 None:intergenic 45.0%
CTGAAATTGCTGGAAGAACG+CGG - chr6_1:76956957-76956976 None:intergenic 45.0%
CAGTCAAAATTTCGGCAGAG+AGG + chr6_1:76956974-76956993 Msa0893360:intron 45.0%
!!! TTTTTATTATTAATTACTTT+TGG + chr6_1:76957043-76957062 Msa0893360:intron 5.0%
TCCTCACACCCCTATATACC+GGG - chr6_1:76954104-76954123 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6_1:76954191-76954210 Msa0893360:CDS 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6_1:76954220-76954239 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - chr6_1:76954265-76954284 None:intergenic 50.0%
!! TCAACTTTGCAGACTCGGTG+TGG + chr6_1:76954268-76954287 Msa0893360:CDS 50.0%
! AATGTCTTTTGCCTCAGCGG+TGG - chr6_1:76954310-76954329 None:intergenic 50.0%
CTTGTCTGGTCTGAAAGCCT+CGG - chr6_1:76954355-76954374 None:intergenic 50.0%
TGTCGTTGCAGTGGAAGAAG+AGG + chr6_1:76954413-76954432 Msa0893360:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6_1:76954494-76954513 Msa0893360:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6_1:76954498-76954517 None:intergenic 50.0%
!!! AACGGACTACTTTTGACCCG+GGG - chr6_1:76955104-76955123 None:intergenic 50.0%
AGTGTAACTGATCCGTCCAG+TGG + chr6_1:76955124-76955143 Msa0893360:intron 50.0%
GTGTAACTGATCCGTCCAGT+GGG + chr6_1:76955125-76955144 Msa0893360:intron 50.0%
ATCCGTCCAGTGGGAATAGA+TGG + chr6_1:76955134-76955153 Msa0893360:intron 50.0%
CACCATCTATTCCCACTGGA+CGG - chr6_1:76955139-76955158 None:intergenic 50.0%
GCGATGGTGAAGTGATCTTG+CGG + chr6_1:76955186-76955205 Msa0893360:intron 50.0%
ATGGTGAAGTGATCTTGCGG+TGG + chr6_1:76955189-76955208 Msa0893360:intron 50.0%
TGGTGAAGTGATCTTGCGGT+GGG + chr6_1:76955190-76955209 Msa0893360:intron 50.0%
TGATCTTGCGGTGGGATGAA+AGG + chr6_1:76955198-76955217 Msa0893360:intron 50.0%
GTGACCTTGCTTCATCCTCA+AGG - chr6_1:76955310-76955329 None:intergenic 50.0%
GTGTATGGTGCTTGATGCGT+GGG + chr6_1:76955344-76955363 Msa0893360:intron 50.0%
GCTTTGCCCACTTGTCACTA+TGG + chr6_1:76955462-76955481 Msa0893360:intron 50.0%
!! GAGTTGCTGGAGGTTAGCTT+TGG - chr6_1:76955936-76955955 None:intergenic 50.0%
! TTAGCTTGGTGAGTTGCTGG+AGG - chr6_1:76955946-76955965 None:intergenic 50.0%
TCCAGCAACTCACCAAGCTA+AGG + chr6_1:76955945-76955964 Msa0893360:intron 50.0%
TGGCCAACCAAATGACCACT+GGG + chr6_1:76956014-76956033 Msa0893360:intron 50.0%
ACTATCCCCCAGTGGTCATT+TGG - chr6_1:76956024-76956043 None:intergenic 50.0%
! AATTGTGGACTATCCCCCAG+TGG - chr6_1:76956032-76956051 None:intergenic 50.0%
GACAGCTGGACACTAAAGCT+TGG - chr6_1:76957256-76957275 None:intergenic 50.0%
GCCCAAAAAAACCAGCAGGG+AGG + chr6_1:76954055-76954074 Msa0893360:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + chr6_1:76954083-76954102 Msa0893360:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6_1:76954091-76954110 Msa0893360:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6_1:76954092-76954111 Msa0893360:CDS 55.0%
ACTCGCCACCCGGTATATAG+GGG + chr6_1:76954093-76954112 Msa0893360:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6_1:76954101-76954120 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6_1:76954100-76954119 Msa0893360:CDS 55.0%
!! ACTTTGCAGACTCGGTGTGG+AGG + chr6_1:76954271-76954290 Msa0893360:CDS 55.0%
TGTGGCTGTTGTCGTTGCAG+TGG + chr6_1:76954404-76954423 Msa0893360:CDS 55.0%
CGTGTATGGTGCTTGATGCG+TGG + chr6_1:76955343-76955362 Msa0893360:intron 55.0%
TATGGTGCTTGATGCGTGGG+TGG + chr6_1:76955347-76955366 Msa0893360:intron 55.0%
ATGGTGCTTGATGCGTGGGT+GGG + chr6_1:76955348-76955367 Msa0893360:intron 55.0%
GACTGTCGGTGTGGTCTTTC+AGG + chr6_1:76955416-76955435 Msa0893360:intron 55.0%
GGCGATGTTCCTTAAGTCGG+TGG + chr6_1:76955437-76955456 Msa0893360:intron 55.0%
!! GCAAAGCGTCCACCGACTTA+AGG - chr6_1:76955449-76955468 None:intergenic 55.0%
ACTGTTTCGGACCGACCATG+AGG - chr6_1:76955494-76955513 None:intergenic 55.0%
! GCCTTAGCTTGGTGAGTTGC+TGG - chr6_1:76955949-76955968 None:intergenic 55.0%
GTGGCCAACCAAATGACCAC+TGG + chr6_1:76956013-76956032 Msa0893360:intron 55.0%
GGCCAACCAAATGACCACTG+GGG + chr6_1:76956015-76956034 Msa0893360:intron 55.0%
GCCAACCAAATGACCACTGG+GGG + chr6_1:76956016-76956035 Msa0893360:intron 55.0%
TCCCCCAGTGGTCATTTGGT+TGG - chr6_1:76956020-76956039 None:intergenic 55.0%
CAAGTAACAACGGGGAGGGG+CGG + chr6_1:76954019-76954038 Msa0893360:CDS 60.0%
TCCTATTCCTGCCACCGCTG+AGG + chr6_1:76954296-76954315 Msa0893360:CDS 60.0%
! TCTTTTGCCTCAGCGGTGGC+AGG - chr6_1:76954306-76954325 None:intergenic 60.0%
GGCATAGTGCTCTGGTGCGA+TGG + chr6_1:76955170-76955189 Msa0893360:intron 60.0%
TGGTGCTTGATGCGTGGGTG+GGG + chr6_1:76955349-76955368 Msa0893360:intron 60.0%
GGGGTAAGGCGTACGACTGT+CGG + chr6_1:76955402-76955421 Msa0893360:intron 60.0%
AAGGCGTACGACTGTCGGTG+TGG + chr6_1:76955407-76955426 Msa0893360:intron 60.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6_1:76954199-76954218 Msa0893360:CDS 65.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6_1:76954200-76954219 Msa0893360:CDS 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6_1:76954208-76954227 None:intergenic 65.0%
GCCTCAGCGGTGGCAGGAAT+AGG - chr6_1:76954300-76954319 None:intergenic 65.0%
GGTGCTTGATGCGTGGGTGG+GGG + chr6_1:76955350-76955369 Msa0893360:intron 65.0%
GTGCTTGATGCGTGGGTGGG+GGG + chr6_1:76955351-76955370 Msa0893360:intron 65.0%
TTGATGCGTGGGTGGGGGGT+GGG + chr6_1:76955355-76955374 Msa0893360:intron 65.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6_1:76954201-76954220 None:intergenic 70.0%
GGCAGCTGCAGAAGCTGCCG+AGG + chr6_1:76954335-76954354 Msa0893360:CDS 70.0%
CTTGATGCGTGGGTGGGGGG+TGG + chr6_1:76955354-76955373 Msa0893360:intron 70.0%
TGATGCGTGGGTGGGGGGTG+GGG + chr6_1:76955356-76955375 Msa0893360:intron 70.0%
!! GGGGGCGTTCGAGTGGGGTA+AGG + chr6_1:76955388-76955407 Msa0893360:intron 70.0%
GATGCGTGGGTGGGGGGTGG+GGG + chr6_1:76955357-76955376 Msa0893360:intron 75.0%
!! GGGGAGGGGGGCGTTCGAGT+GGG + chr6_1:76955382-76955401 Msa0893360:intron 75.0%
!! GGGAGGGGGGCGTTCGAGTG+GGG + chr6_1:76955383-76955402 Msa0893360:intron 75.0%
! CGTGGGTGGGGGGTGGGGGT+GGG + chr6_1:76955361-76955380 Msa0893360:intron 80.0%
! GTGGGTGGGGGGTGGGGGTG+GGG + chr6_1:76955362-76955381 Msa0893360:intron 80.0%
! TGGGTGGGGGGTGGGGGTGG+GGG + chr6_1:76955363-76955382 Msa0893360:intron 80.0%
! TGGGGGGTGGGGGTGGGGGA+GGG + chr6_1:76955367-76955386 Msa0893360:intron 80.0%
!!! GGGGGAGGGGGGCGTTCGAG+TGG + chr6_1:76955381-76955400 Msa0893360:intron 80.0%
! GCGTGGGTGGGGGGTGGGGG+TGG + chr6_1:76955360-76955379 Msa0893360:intron 85.0%
! GTGGGGGGTGGGGGTGGGGG+AGG + chr6_1:76955366-76955385 Msa0893360:intron 85.0%
! GGGGGGTGGGGGTGGGGGAG+GGG + chr6_1:76955368-76955387 Msa0893360:intron 85.0%
! GGGGGTGGGGGTGGGGGAGG+GGG + chr6_1:76955369-76955388 Msa0893360:intron 85.0%
! GGGGTGGGGGTGGGGGAGGG+GGG + chr6_1:76955370-76955389 Msa0893360:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 76953910 76957350 76953910 ID=Msa0893360;Name=Msa0893360
chr6_1 mRNA 76953910 76957350 76953910 ID=Msa0893360-mRNA-1;Parent=Msa0893360;Name=Msa0893360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=102|0|0.5|0.5|0|0.5|2|0|200
chr6_1 exon 76953910 76954590 76953910 ID=Msa0893360-mRNA-1:exon:12829;Parent=Msa0893360-mRNA-1
chr6_1 exon 76957327 76957350 76957327 ID=Msa0893360-mRNA-1:exon:12830;Parent=Msa0893360-mRNA-1
chr6_1 five_prime_UTR 76953910 76954011 76953910 ID=Msa0893360-mRNA-1:five_prime_utr;Parent=Msa0893360-mRNA-1
chr6_1 CDS 76954012 76954590 76954012 ID=Msa0893360-mRNA-1:cds;Parent=Msa0893360-mRNA-1
chr6_1 CDS 76957327 76957350 76957327 ID=Msa0893360-mRNA-1:cds;Parent=Msa0893360-mRNA-1
Gene Sequence

>Msa0893360

ATGTTTACAAGTAACAACGGGGAGGGGCGGTTAGCCGCGAGTTGCCCAAAAAAACCAGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCGGTGTGGAGGCTTCCTATTCCTGCCACCGCTGAGGCAAAAGACATTCAAAGGGCAGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAATGACTAGTGACATTGACACGGTTGTGGCTGTTGTCGTTGCAGTGGAAGAAGAGGAAGAACTGTTGAATATGTTTTGTGTTGAAGTCGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTATGGAGCATGAGTATGAAGATTTTGAAGTACAAGACTTTCAATATGAGGAGAGTTTAACTAGTTGGTCACTATAA
Protein sequence

>Msa0893360

MFTSNNGEGRLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSVWRLPIPATAEAKDIQRAAAEAAEAFRPDKTLMTSDIDTVVAVVVAVEEEEELLNMFCVEVEEEEEVLNMPELWRNMALMSPTHSMEHEYEDFEVQDFQYEESLTSWSL*