AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448120 MtrunA17_Chr3g0090001 90.123 405 30 2 1 397 1 403 0.0 672
Msa0448120 MtrunA17_Chr3g0089951 95.000 100 5 0 244 343 1 100 1.44e-53 173
Msa0448120 MtrunA17_Chr7g0264491 35.000 300 182 1 110 396 254 553 8.57e-48 171
Msa0448120 MtrunA17_Chr3g0145921 37.131 237 149 0 161 397 335 571 2.69e-46 167
Msa0448120 MtrunA17_Chr1g0180881 31.629 313 196 3 97 396 250 557 5.40e-42 155
Msa0448120 MtrunA17_Chr4g0021031 33.333 351 192 8 68 385 149 490 1.20e-40 150
Msa0448120 MtrunA17_Chr1g0146481 33.065 248 159 2 150 396 306 547 5.63e-37 141
Msa0448120 MtrunA17_Chr3g0126401 28.405 257 177 4 145 397 261 514 2.65e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448120 AT5G13730.1 56.478 301 121 2 105 395 114 414 3.82e-111 332
Msa0448120 AT1G08540.1 31.054 351 224 4 60 397 224 569 1.81e-45 165
Msa0448120 AT2G36990.1 35.565 239 154 0 158 396 305 543 2.08e-45 164
Msa0448120 AT1G64860.1 33.235 340 200 6 68 385 154 488 3.09e-42 155
Msa0448120 AT1G64860.2 32.075 318 189 6 68 363 154 466 1.81e-34 134
Msa0448120 AT3G53920.1 32.911 237 158 1 161 396 333 569 2.12e-34 134
Msa0448120 AT5G24120.1 26.606 218 152 3 183 397 305 517 7.50e-16 79.7
Msa0448120 AT5G24120.3 26.606 218 152 3 183 397 305 517 7.50e-16 79.7
Msa0448120 AT5G24120.2 26.606 218 152 3 183 397 305 517 7.50e-16 79.7
Msa0448120 AT3G53920.2 42.308 78 45 0 161 238 333 410 1.43e-14 75.5

Find 80 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTACAAATTTGGTTTA+TGG 0.107276 3_3:-27262348 Msa0448120:CDS
TTCAAAATTTGGTACAAATT+TGG 0.133370 3_3:-27262355 Msa0448120:CDS
CCTATTCATAAATCTTAATT+AGG 0.157138 3_3:+27259970 None:intergenic
ACTATTATACCTTCAAAATT+TGG 0.177191 3_3:-27262366 Msa0448120:CDS
CCTAATTAAGATTTATGAAT+AGG 0.263201 3_3:-27259970 Msa0448120:three_prime_UTR
ATAGCTCTGTCCAATGAAAT+TGG 0.295581 3_3:+27260431 None:intergenic
ACAAGGCATGATTAAAGCTT+TGG 0.334814 3_3:-27261221 Msa0448120:CDS
TATTTATAGGGAGAAAAGTA+TGG 0.343959 3_3:-27260590 Msa0448120:intron
GAAGCTAGAAATGCTGGAAT+TGG 0.365294 3_3:-27262264 Msa0448120:CDS
TGCTATTTCAAGGTTTACTT+TGG 0.382886 3_3:-27261544 Msa0448120:CDS
GGAACCATTGGACTTCTTCA+TGG 0.384588 3_3:-27261307 Msa0448120:CDS
AGCTTCATCCACAGCATCAT+TGG 0.391120 3_3:+27262281 None:intergenic
ATATTATACTTTGGACTCAA+TGG 0.405310 3_3:-27260144 Msa0448120:CDS
GTTGTAGGGTCTGTGACATC+AGG 0.407779 3_3:-27262123 Msa0448120:CDS
GTCTTTAGAGATGGAAAAGT+TGG 0.408480 3_3:+27262417 None:intergenic
TTCTCCGGAATCATTTCAAC+TGG 0.414074 3_3:+27260246 None:intergenic
GAGCAGACAACCAATTTCAT+TGG 0.418328 3_3:-27260441 Msa0448120:CDS
AGCTGTCTACATATGTTTAC+TGG 0.421708 3_3:-27261252 Msa0448120:CDS
GGAGAAAATGTTTGAGAGAC+AGG 0.428727 3_3:-27260229 Msa0448120:CDS
AAGGGAATTATGCTATTTCA+AGG 0.430126 3_3:-27261554 Msa0448120:CDS
CACCGGTAATCTGACTAATC+TGG 0.431896 3_3:+27261189 None:intergenic
GAATGTTGATGTCTGGTTTG+TGG 0.442578 3_3:+27262464 None:intergenic
GAGATTGTAATATTATACTT+TGG 0.445378 3_3:-27260153 Msa0448120:CDS
GCATAGGAATTGATGATATG+AGG 0.447616 3_3:-27262233 Msa0448120:CDS
ATATTCAGAACAATTTCTTA+AGG 0.448190 3_3:-27262155 Msa0448120:CDS
GTCCAGATTAGTCAGATTAC+CGG 0.449365 3_3:-27261191 Msa0448120:intron
GGGACCAGTTGAAATGATTC+CGG 0.449561 3_3:-27260250 Msa0448120:CDS
CTATCTCCTCAAAAGACAAA+GGG 0.452640 3_3:+27260115 None:intergenic
TTAAGGCAGAAAGAGGTTGT+AGG 0.464002 3_3:-27262138 Msa0448120:CDS
GAGAAATTTGATCCGGATAG+AGG 0.468549 3_3:-27261280 Msa0448120:CDS
GAAAGCTGTTGAAACTATCA+AGG 0.471546 3_3:-27260092 Msa0448120:CDS
GTTGATGTCTGGTTTGTGGA+TGG 0.471649 3_3:+27262468 None:intergenic
ATGATATGAGGAGGAAGAGA+AGG 0.474045 3_3:-27262221 Msa0448120:CDS
TAGTAAGAGCAAATCTCATA+TGG 0.488345 3_3:-27259916 Msa0448120:three_prime_UTR
TGGTAGGGAATGTTGATGTC+TGG 0.489773 3_3:+27262457 None:intergenic
GAGAGACAGGTAATGAAGGA+AGG 0.490016 3_3:-27260216 Msa0448120:CDS
GTGGATGAAGCTAGAAATGC+TGG 0.495403 3_3:-27262270 Msa0448120:CDS
CAATTTCTTAAGGCAGAAAG+AGG 0.497879 3_3:-27262145 Msa0448120:CDS
GTTTGAGAGACAGGTAATGA+AGG 0.499603 3_3:-27260220 Msa0448120:CDS
AGAGACAGGTAATGAAGGAA+GGG 0.501313 3_3:-27260215 Msa0448120:CDS
TTTAACCAGGAAGGAACCAT+TGG 0.503437 3_3:-27261319 Msa0448120:intron
TGAGCTTTGTTTATGTCTCA+AGG 0.503531 3_3:-27262076 Msa0448120:intron
GACAGCTTACATCCTCTATC+CGG 0.518858 3_3:+27261268 None:intergenic
TGGAGCAGAGAAATTTGATC+CGG 0.520546 3_3:-27261287 Msa0448120:CDS
TAAGGCAGAAAGAGGTTGTA+GGG 0.522827 3_3:-27262137 Msa0448120:CDS
TATAATGCAGGAGATTATAC+CGG 0.529279 3_3:-27260271 Msa0448120:intron
CTGTAAAACTTGTTTCTGAA+AGG 0.534187 3_3:-27260463 Msa0448120:CDS
TCAATCGCAACACGATATCA+AGG 0.537772 3_3:-27261438 Msa0448120:CDS
CCTATCTCCTCAAAAGACAA+AGG 0.538706 3_3:+27260114 None:intergenic
GGAATCATTTCAACTGGTCC+CGG 0.544959 3_3:+27260252 None:intergenic
TCAGCAATTTCATTATATGT+CGG 0.554776 3_3:+27260509 None:intergenic
TTGTAGGGTCTGTGACATCA+GGG 0.556165 3_3:-27262122 Msa0448120:CDS
GAATGGTGTGTCTTTAGAGA+TGG 0.559338 3_3:+27262408 None:intergenic
ATAGGGAGAAAAGTATGGAA+TGG 0.569556 3_3:-27260585 Msa0448120:intron
TGTTGAAACTATCAAGGGAG+AGG 0.571469 3_3:-27260086 Msa0448120:CDS
GAGACAGGTAATGAAGGAAG+GGG 0.571902 3_3:-27260214 Msa0448120:CDS
TGGTGATGCATTAGTCATTG+TGG 0.585488 3_3:-27262328 Msa0448120:CDS
AGTGATGTTAGAGACATGGT+AGG 0.595530 3_3:+27262441 None:intergenic
TGCTCCATGAAGAAGTCCAA+TGG 0.596543 3_3:+27261303 None:intergenic
TAGAAATGCTGGAATTGGAA+AGG 0.601272 3_3:-27262259 Msa0448120:CDS
TGGAAGTGATGTTAGAGACA+TGG 0.602214 3_3:+27262437 None:intergenic
GGGGCAAAGATAGAAAATGA+AGG 0.606263 3_3:-27261573 Msa0448120:CDS
AAGCATTCAAGATCTCATCC+AGG 0.606664 3_3:-27261406 Msa0448120:intron
TGTCTACATATGTTTACTGG+TGG 0.613609 3_3:-27261249 Msa0448120:CDS
GTTTACTGGTGGATTAAACA+AGG 0.614224 3_3:-27261238 Msa0448120:CDS
GGAATTGGAAAGGAGTGCAT+AGG 0.618538 3_3:-27262249 Msa0448120:CDS
TCAGAGCAACTTAATACTGA+AGG 0.620679 3_3:-27260402 Msa0448120:intron
GCAACACGATATCAAGGCAA+AGG 0.632504 3_3:-27261432 Msa0448120:CDS
ATAATGCAGGAGATTATACC+GGG 0.633370 3_3:-27260270 Msa0448120:intron
GGGCAAAGATAGAAAATGAA+GGG 0.633655 3_3:-27261572 Msa0448120:CDS
GTGATGTTAGAGACATGGTA+GGG 0.635108 3_3:+27262442 None:intergenic
AAAGCTGTTGAAACTATCAA+GGG 0.636294 3_3:-27260091 Msa0448120:CDS
TGCATTAGCCAATGATGCTG+TGG 0.639996 3_3:-27262289 Msa0448120:CDS
AGTTGTAAAATGACAATCAG+TGG 0.641802 3_3:-27259890 Msa0448120:three_prime_UTR
GACATATAATGAAATTGCTG+AGG 0.644481 3_3:-27260507 Msa0448120:CDS
TAGGAATTGATGATATGAGG+AGG 0.652900 3_3:-27262230 Msa0448120:CDS
TCTTAAGACGAAGACTGAGG+CGG 0.681542 3_3:-27260535 Msa0448120:CDS
TATCTCCTCAAAAGACAAAG+GGG 0.686203 3_3:+27260116 None:intergenic
AGATTAGCTCGTGATTATCG+CGG 0.696504 3_3:-27261471 Msa0448120:CDS
ATGTCTTAAGACGAAGACTG+AGG 0.725315 3_3:-27260538 Msa0448120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAACATTTTTTG+GGG - chr3_3:27261190-27261209 Msa0448120:intron 10.0%
!! TAAAAATAATATGAAAAGTG+TGG - chr3_3:27260500-27260519 Msa0448120:CDS 15.0%
!! AAAATTTGCATTATACAAAA+TGG + chr3_3:27260680-27260699 None:intergenic 15.0%
!!! TTTTTTATAACATTTTTTGG+GGG - chr3_3:27261191-27261210 Msa0448120:intron 15.0%
!!! AATTTTGAAGGTATAATAGT+AGG + chr3_3:27259982-27260001 None:intergenic 20.0%
!! ACTATTATACCTTCAAAATT+TGG - chr3_3:27259982-27260001 Msa0448120:three_prime_UTR 20.0%
!!! AAATTTGTACCAAATTTTGA+AGG + chr3_3:27259994-27260013 None:intergenic 20.0%
!! TTCAAAATTTGGTACAAATT+TGG - chr3_3:27259993-27260012 Msa0448120:exon 20.0%
!! AGAAAAAGAAGGAAAAATTT+GGG - chr3_3:27260150-27260169 Msa0448120:CDS 20.0%
!! ATATTCAGAACAATTTCTTA+AGG - chr3_3:27260193-27260212 Msa0448120:CDS 20.0%
!! AATGGTTAATGAATATAACA+TGG + chr3_3:27260585-27260604 None:intergenic 20.0%
!! CATTGTTTAGTAGATAAATT+TGG + chr3_3:27260640-27260659 None:intergenic 20.0%
!!! ATTTGTTAAAGTTTCTCATT+AGG - chr3_3:27260994-27261013 Msa0448120:intron 20.0%
!! ATAAAAAAAATTTGTCTCAC+CGG + chr3_3:27261179-27261198 None:intergenic 20.0%
!!! ACTATTTTACAACTATTCTA+AGG - chr3_3:27261255-27261274 Msa0448120:CDS 20.0%
!!! TTTATTTTTCCGGTTTATAA+CGG + chr3_3:27261619-27261638 None:intergenic 20.0%
!! ATAAACCGGAAAAATAAAAT+TGG - chr3_3:27261621-27261640 Msa0448120:intron 20.0%
!!! AGTAACCAATTTTATTTTTC+CGG + chr3_3:27261629-27261648 None:intergenic 20.0%
!! AACTGTTTATTATGAATGTT+TGG - chr3_3:27261726-27261745 Msa0448120:intron 20.0%
!!! TTGGTTAGTTTGTTATTTAT+AGG - chr3_3:27261745-27261764 Msa0448120:intron 20.0%
!!! TGGTTAGTTTGTTATTTATA+GGG - chr3_3:27261746-27261765 Msa0448120:intron 20.0%
!!! TACAATTTCATTCGTATTTT+AGG - chr3_3:27261972-27261991 Msa0448120:intron 20.0%
!! GAGATTGTAATATTATACTT+TGG - chr3_3:27262195-27262214 Msa0448120:CDS 20.0%
!! CCTATTCATAAATCTTAATT+AGG + chr3_3:27262381-27262400 None:intergenic 20.0%
!! CCTAATTAAGATTTATGAAT+AGG - chr3_3:27262378-27262397 Msa0448120:CDS 20.0%
!! GTAAATTTTGTTGAAGTGAA+TGG + chr3_3:27259960-27259979 None:intergenic 25.0%
!! TTTGGTACAAATTTGGTTTA+TGG - chr3_3:27260000-27260019 Msa0448120:exon 25.0%
! GAGAAAAAGAAGGAAAAATT+TGG - chr3_3:27260149-27260168 Msa0448120:CDS 25.0%
! GTTCTTAAGATTACAATTCT+AGG + chr3_3:27260465-27260484 None:intergenic 25.0%
!! TATAATGCAAATTTTCTTGC+TGG - chr3_3:27260685-27260704 Msa0448120:intron 25.0%
!!! GCATTTTATTTCATTTAACC+AGG - chr3_3:27261016-27261035 Msa0448120:intron 25.0%
! TTTATTTCATTTAACCAGGA+AGG - chr3_3:27261020-27261039 Msa0448120:intron 25.0%
! AACCAATCATATGGTAAATT+TGG - chr3_3:27261407-27261426 Msa0448120:CDS 25.0%
! TATTTATAGGGAGAAAAGTA+TGG - chr3_3:27261758-27261777 Msa0448120:intron 25.0%
! TCAGCAATTTCATTATATGT+CGG + chr3_3:27261842-27261861 None:intergenic 25.0%
! TGTTTACTATGATATAATGC+AGG - chr3_3:27262065-27262084 Msa0448120:intron 25.0%
! ATATTATACTTTGGACTCAA+TGG - chr3_3:27262204-27262223 Msa0448120:CDS 25.0%
! AAGGAAAAATTTGGGATGTA+TGG - chr3_3:27260158-27260177 Msa0448120:CDS 30.0%
! GTTAACGATGTTTAAAATCG+TGG - chr3_3:27260522-27260541 Msa0448120:CDS 30.0%
CGTTAATTATGCTCAATGAA+TGG + chr3_3:27260603-27260622 None:intergenic 30.0%
ATTCATATTCCATCACTAAC+AGG - chr3_3:27260719-27260738 Msa0448120:intron 30.0%
TTTGTGTGTTGAATAACAAC+AGG - chr3_3:27260750-27260769 Msa0448120:intron 30.0%
!! AAGGGAATTATGCTATTTCA+AGG - chr3_3:27260794-27260813 Msa0448120:intron 30.0%
!! TGCTATTTCAAGGTTTACTT+TGG - chr3_3:27260804-27260823 Msa0448120:intron 30.0%
!! TTAGCTTTGAACCAATCATA+TGG - chr3_3:27261398-27261417 Msa0448120:intron 30.0%
CACCAAATTTACCATATGAT+TGG + chr3_3:27261412-27261431 None:intergenic 30.0%
CGTGAATTGTGAAAACTTAA+CGG + chr3_3:27261447-27261466 None:intergenic 30.0%
TTGATTAGACGAAGTTAGTT+AGG - chr3_3:27261482-27261501 Msa0448120:CDS 30.0%
! ACTTTTACTGACGTATGTTT+CGG + chr3_3:27261552-27261571 None:intergenic 30.0%
AGTGATATACCGTTATAAAC+CGG - chr3_3:27261607-27261626 Msa0448120:intron 30.0%
! CACTATTTTCATAGTCTCTT+TGG - chr3_3:27261652-27261671 Msa0448120:intron 30.0%
GACATATAATGAAATTGCTG+AGG - chr3_3:27261841-27261860 Msa0448120:intron 30.0%
!! CTGTAAAACTTGTTTCTGAA+AGG - chr3_3:27261885-27261904 Msa0448120:intron 30.0%
TATAATGCAGGAGATTATAC+CGG - chr3_3:27262077-27262096 Msa0448120:CDS 30.0%
AAAGCTGTTGAAACTATCAA+GGG - chr3_3:27262257-27262276 Msa0448120:CDS 30.0%
TAGTAAGAGCAAATCTCATA+TGG - chr3_3:27262432-27262451 Msa0448120:CDS 30.0%
AGTTGTAAAATGACAATCAG+TGG - chr3_3:27262458-27262477 Msa0448120:five_prime_UTR 30.0%
! GTCTTTAGAGATGGAAAAGT+TGG + chr3_3:27259934-27259953 None:intergenic 35.0%
TAGAAATGCTGGAATTGGAA+AGG - chr3_3:27260089-27260108 Msa0448120:CDS 35.0%
! GCATAGGAATTGATGATATG+AGG - chr3_3:27260115-27260134 Msa0448120:CDS 35.0%
! TAGGAATTGATGATATGAGG+AGG - chr3_3:27260118-27260137 Msa0448120:CDS 35.0%
! GAAAAATTTGGGATGTATGG+TGG - chr3_3:27260161-27260180 Msa0448120:CDS 35.0%
CAATTTCTTAAGGCAGAAAG+AGG - chr3_3:27260203-27260222 Msa0448120:CDS 35.0%
!! TGAGCTTTGTTTATGTCTCA+AGG - chr3_3:27260272-27260291 Msa0448120:intron 35.0%
!! ATTTTAGTCCCTAAAGTTGC+AGG - chr3_3:27260349-27260368 Msa0448120:intron 35.0%
TCGTGGTTAATTGTGTTATG+TGG - chr3_3:27260539-27260558 Msa0448120:CDS 35.0%
ATGCATAATCCTGTTAGTGA+TGG + chr3_3:27260731-27260750 None:intergenic 35.0%
TGTGTTGAATAACAACAGGA+GGG - chr3_3:27260754-27260773 Msa0448120:intron 35.0%
GGGCAAAGATAGAAAATGAA+GGG - chr3_3:27260776-27260795 Msa0448120:intron 35.0%
AGCTGTCTACATATGTTTAC+TGG - chr3_3:27261096-27261115 Msa0448120:intron 35.0%
TGTCTACATATGTTTACTGG+TGG - chr3_3:27261099-27261118 Msa0448120:intron 35.0%
!! GTTTACTGGTGGATTAAACA+AGG - chr3_3:27261110-27261129 Msa0448120:intron 35.0%
ACAAGGCATGATTAAAGCTT+TGG - chr3_3:27261127-27261146 Msa0448120:intron 35.0%
!! GATTTTAACCTTGAGCAACA+TGG - chr3_3:27261365-27261384 Msa0448120:intron 35.0%
AAAAACAACCATGTTGCTCA+AGG + chr3_3:27261376-27261395 None:intergenic 35.0%
TAGACGAAGTTAGTTAGGTA+TGG - chr3_3:27261487-27261506 Msa0448120:CDS 35.0%
! ATAGGGAGAAAAGTATGGAA+TGG - chr3_3:27261763-27261782 Msa0448120:intron 35.0%
! ATAGCTCTGTCCAATGAAAT+TGG + chr3_3:27261920-27261939 None:intergenic 35.0%
TCAGAGCAACTTAATACTGA+AGG - chr3_3:27261946-27261965 Msa0448120:intron 35.0%
ATAATGCAGGAGATTATACC+GGG - chr3_3:27262078-27262097 Msa0448120:CDS 35.0%
! TGTCTCTCAAACATTTTCTC+CGG + chr3_3:27262120-27262139 None:intergenic 35.0%
TATCTCCTCAAAAGACAAAG+GGG + chr3_3:27262235-27262254 None:intergenic 35.0%
CTATCTCCTCAAAAGACAAA+GGG + chr3_3:27262236-27262255 None:intergenic 35.0%
GAAAGCTGTTGAAACTATCA+AGG - chr3_3:27262256-27262275 Msa0448120:CDS 35.0%
! GAATGTTGATGTCTGGTTTG+TGG + chr3_3:27259887-27259906 None:intergenic 40.0%
GTGATGTTAGAGACATGGTA+GGG + chr3_3:27259909-27259928 None:intergenic 40.0%
AGTGATGTTAGAGACATGGT+AGG + chr3_3:27259910-27259929 None:intergenic 40.0%
TGGAAGTGATGTTAGAGACA+TGG + chr3_3:27259914-27259933 None:intergenic 40.0%
! GAATGGTGTGTCTTTAGAGA+TGG + chr3_3:27259943-27259962 None:intergenic 40.0%
! TGGTGATGCATTAGTCATTG+TGG - chr3_3:27260020-27260039 Msa0448120:CDS 40.0%
GAAGCTAGAAATGCTGGAAT+TGG - chr3_3:27260084-27260103 Msa0448120:CDS 40.0%
ATGATATGAGGAGGAAGAGA+AGG - chr3_3:27260127-27260146 Msa0448120:CDS 40.0%
GGAAGAGAAGGAGAAAAAGA+AGG - chr3_3:27260139-27260158 Msa0448120:CDS 40.0%
TTAAGGCAGAAAGAGGTTGT+AGG - chr3_3:27260210-27260229 Msa0448120:CDS 40.0%
TAAGGCAGAAAGAGGTTGTA+GGG - chr3_3:27260211-27260230 Msa0448120:CDS 40.0%
GATTGATGCCTGCAACTTTA+GGG + chr3_3:27260360-27260379 None:intergenic 40.0%
CTAAAGTTGCAGGCATCAAT+CGG - chr3_3:27260359-27260378 Msa0448120:intron 40.0%
GACACTCTTAATTCAGTCTC+TGG + chr3_3:27260443-27260462 None:intergenic 40.0%
GTGTGTTGAATAACAACAGG+AGG - chr3_3:27260753-27260772 Msa0448120:intron 40.0%
GTGTTGAATAACAACAGGAG+GGG - chr3_3:27260755-27260774 Msa0448120:intron 40.0%
TGTTGAATAACAACAGGAGG+GGG - chr3_3:27260756-27260775 Msa0448120:intron 40.0%
GGGGCAAAGATAGAAAATGA+AGG - chr3_3:27260775-27260794 Msa0448120:intron 40.0%
! AGATTAGCTCGTGATTATCG+CGG - chr3_3:27260877-27260896 Msa0448120:intron 40.0%
TCAATCGCAACACGATATCA+AGG - chr3_3:27260910-27260929 Msa0448120:intron 40.0%
AAGCATTCAAGATCTCATCC+AGG - chr3_3:27260942-27260961 Msa0448120:intron 40.0%
GAAATGTGTTAGTATGCACC+TGG + chr3_3:27260963-27260982 None:intergenic 40.0%
TTTAACCAGGAAGGAACCAT+TGG - chr3_3:27261029-27261048 Msa0448120:intron 40.0%
TGGAGCAGAGAAATTTGATC+CGG - chr3_3:27261061-27261080 Msa0448120:intron 40.0%
GAGAAATTTGATCCGGATAG+AGG - chr3_3:27261068-27261087 Msa0448120:intron 40.0%
! GTCCAGATTAGTCAGATTAC+CGG - chr3_3:27261157-27261176 Msa0448120:intron 40.0%
!!! TATAACATTTTTTGGGGGCG+AGG - chr3_3:27261196-27261215 Msa0448120:CDS 40.0%
!!! ATAACATTTTTTGGGGGCGA+GGG - chr3_3:27261197-27261216 Msa0448120:CDS 40.0%
TTAGTTAGGTATGGTGCATG+CGG - chr3_3:27261496-27261515 Msa0448120:CDS 40.0%
AATGGTTGCAAAAATCGCAG+AGG - chr3_3:27261781-27261800 Msa0448120:intron 40.0%
ATGTCTTAAGACGAAGACTG+AGG - chr3_3:27261810-27261829 Msa0448120:intron 40.0%
GAGCAGACAACCAATTTCAT+TGG - chr3_3:27261907-27261926 Msa0448120:intron 40.0%
TTCTCCGGAATCATTTCAAC+TGG + chr3_3:27262105-27262124 None:intergenic 40.0%
GGAGAAAATGTTTGAGAGAC+AGG - chr3_3:27262119-27262138 Msa0448120:CDS 40.0%
GTTTGAGAGACAGGTAATGA+AGG - chr3_3:27262128-27262147 Msa0448120:CDS 40.0%
AGAGACAGGTAATGAAGGAA+GGG - chr3_3:27262133-27262152 Msa0448120:CDS 40.0%
CCTATCTCCTCAAAAGACAA+AGG + chr3_3:27262237-27262256 None:intergenic 40.0%
!! CCTTTGTCTTTTGAGGAGAT+AGG - chr3_3:27262234-27262253 Msa0448120:CDS 40.0%
TGTTGAAACTATCAAGGGAG+AGG - chr3_3:27262262-27262281 Msa0448120:CDS 40.0%
! GTTGATGTCTGGTTTGTGGA+TGG + chr3_3:27259883-27259902 None:intergenic 45.0%
TGGTAGGGAATGTTGATGTC+TGG + chr3_3:27259894-27259913 None:intergenic 45.0%
TGCATTAGCCAATGATGCTG+TGG - chr3_3:27260059-27260078 Msa0448120:CDS 45.0%
AGCTTCATCCACAGCATCAT+TGG + chr3_3:27260070-27260089 None:intergenic 45.0%
GTGGATGAAGCTAGAAATGC+TGG - chr3_3:27260078-27260097 Msa0448120:CDS 45.0%
! GGAATTGGAAAGGAGTGCAT+AGG - chr3_3:27260099-27260118 Msa0448120:CDS 45.0%
TTGTAGGGTCTGTGACATCA+GGG - chr3_3:27260226-27260245 Msa0448120:CDS 45.0%
CGATTGATGCCTGCAACTTT+AGG + chr3_3:27260361-27260380 None:intergenic 45.0%
GCAACACGATATCAAGGCAA+AGG - chr3_3:27260916-27260935 Msa0448120:intron 45.0%
GGAACCATTGGACTTCTTCA+TGG - chr3_3:27261041-27261060 Msa0448120:intron 45.0%
TGCTCCATGAAGAAGTCCAA+TGG + chr3_3:27261048-27261067 None:intergenic 45.0%
GACAGCTTACATCCTCTATC+CGG + chr3_3:27261083-27261102 None:intergenic 45.0%
CACCGGTAATCTGACTAATC+TGG + chr3_3:27261162-27261181 None:intergenic 45.0%
!!! TAACATTTTTTGGGGGCGAG+GGG - chr3_3:27261198-27261217 Msa0448120:CDS 45.0%
TATTTGAACCGCGTCTCTTG+AGG - chr3_3:27261279-27261298 Msa0448120:CDS 45.0%
TCTTAAGACGAAGACTGAGG+CGG - chr3_3:27261813-27261832 Msa0448120:intron 45.0%
GGAATCATTTCAACTGGTCC+CGG + chr3_3:27262099-27262118 None:intergenic 45.0%
GGGACCAGTTGAAATGATTC+CGG - chr3_3:27262098-27262117 Msa0448120:CDS 45.0%
GAGAGACAGGTAATGAAGGA+AGG - chr3_3:27262132-27262151 Msa0448120:CDS 45.0%
GAGACAGGTAATGAAGGAAG+GGG - chr3_3:27262134-27262153 Msa0448120:CDS 45.0%
! AGAGACCCCTTTGTCTTTTG+AGG - chr3_3:27262227-27262246 Msa0448120:CDS 45.0%
!!! ATTTTTTTTATAACATTTTT+TGG - chr3_3:27261188-27261207 Msa0448120:intron 5.0%
!!! TTTTTTTTATAACATTTTTT+GGG - chr3_3:27261189-27261208 Msa0448120:intron 5.0%
GTTGTAGGGTCTGTGACATC+AGG - chr3_3:27260225-27260244 Msa0448120:CDS 50.0%
GAAGTCCAATGGTTCCTTCC+TGG + chr3_3:27261037-27261056 None:intergenic 50.0%
CCTTGTAACCTCAAGAGACG+CGG + chr3_3:27261290-27261309 None:intergenic 50.0%
CCGCGTCTCTTGAGGTTACA+AGG - chr3_3:27261287-27261306 Msa0448120:CDS 55.0%
GTTAGGTATGGTGCATGCGG+AGG - chr3_3:27261499-27261518 Msa0448120:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 27259859 27262511 27259859 ID=Msa0448120;Name=Msa0448120
chr3_3 mRNA 27259859 27262511 27259859 ID=Msa0448120-mRNA-1;Parent=Msa0448120;Name=Msa0448120-mRNA-1;_AED=0.18;_eAED=0.18;_QI=54|1|1|1|1|1|5|146|397
chr3_3 exon 27259859 27260283 27259859 ID=Msa0448120-mRNA-1:exon:5334;Parent=Msa0448120-mRNA-1
chr3_3 exon 27260403 27260603 27260403 ID=Msa0448120-mRNA-1:exon:5333;Parent=Msa0448120-mRNA-1
chr3_3 exon 27261192 27261332 27261192 ID=Msa0448120-mRNA-1:exon:5332;Parent=Msa0448120-mRNA-1
chr3_3 exon 27261407 27261598 27261407 ID=Msa0448120-mRNA-1:exon:5331;Parent=Msa0448120-mRNA-1
chr3_3 exon 27262077 27262511 27262077 ID=Msa0448120-mRNA-1:exon:5330;Parent=Msa0448120-mRNA-1
chr3_3 five_prime_UTR 27262458 27262511 27262458 ID=Msa0448120-mRNA-1:five_prime_utr;Parent=Msa0448120-mRNA-1
chr3_3 CDS 27262077 27262457 27262077 ID=Msa0448120-mRNA-1:cds;Parent=Msa0448120-mRNA-1
chr3_3 CDS 27261407 27261598 27261407 ID=Msa0448120-mRNA-1:cds;Parent=Msa0448120-mRNA-1
chr3_3 CDS 27261192 27261332 27261192 ID=Msa0448120-mRNA-1:cds;Parent=Msa0448120-mRNA-1
chr3_3 CDS 27260403 27260603 27260403 ID=Msa0448120-mRNA-1:cds;Parent=Msa0448120-mRNA-1
chr3_3 CDS 27260005 27260283 27260005 ID=Msa0448120-mRNA-1:cds;Parent=Msa0448120-mRNA-1
chr3_3 three_prime_UTR 27259859 27260004 27259859 ID=Msa0448120-mRNA-1:three_prime_utr;Parent=Msa0448120-mRNA-1
Gene Sequence

>Msa0448120

ATGTCTCTAACATCACTTCCAACTTTTCCATCTCTAAAGACACACCATTCACTTCAACAAAATTTACCTACTATTATACCTTCAAAATTTGGTACAAATTTGGTTTATGGTGATGCATTAGTCATTGTGGAAACAACAGAAGCAGTTGCATTAGCCAATGATGCTGTGGATGAAGCTAGAAATGCTGGAATTGGAAAGGAGTGCATAGGAATTGATGATATGAGGAGGAAGAGAAGGAGAAAAAGAAGGAAAAATTTGGGATGTATGGTGGAAGAAGAGAATATTCAGAACAATTTCTTAAGGCAGAAAGAGGTTGTAGGGTCTGTGACATCAGGGTTTTTGAGTTCAACAGAAGAAACTGAGCTTTGTTTATGTCTCAAGGAGGGGGCAAAGATAGAAAATGAAGGGAATTATGCTATTTCAAGGTTTACTTTGGAGAATACAAGTCTAGATAAAGTGTTGATTAATACAAGACAATCAAAAGAAAGATTAGCTCGTGATTATCGCGGTTTAGTTGCATCAATCGCAACACGATATCAAGGCAAAGGTTTAAGCATTCAAGATCTCATCCAGGAAGGAACCATTGGACTTCTTCATGGAGCAGAGAAATTTGATCCGGATAGAGGATGTAAGCTGTCTACATATGTTTACTGGTGGATTAAACAAGGCATGATTAAAGCTTTGGCGAAGAAGTCCAGATTAGTCAGATTACCGGGAGAAAAGTATGGAATGGTTGCAAAAATCGCAGAGGCTAACAATGTCTTAAGACGAAGACTGAGGCGGAAGCCGACATATAATGAAATTGCTGAGGTTCTCAATGTGAATGTTTCAACTGTAAAACTTGTTTCTGAAAGGAGCAGACAACCAATTTCATTGGACAGAGCTATAACTGATCAGAGCAACTTAATACTGAAGGAGATTATACCGGGACCAGTTGAAATGATTCCGGAGAAAATGTTTGAGAGACAGGTAATGAAGGAAGGGGTTGTGAAGCTTCTTAACACACTTAACAAGAGAGAAGAAGAGATTGTAATATTATACTTTGGACTCAATGGAGAGACCCCTTTGTCTTTTGAGGAGATAGGAAAGCTGTTGAAACTATCAAGGGAGAGGATCAGACAGATTCATGCAATTGCATTGTCAAAATTGCAACAAAATTCACTTGTAGATAGTCTAAAGTTTTATGTTGTATAG

Protein sequence

>Msa0448120

MSLTSLPTFPSLKTHHSLQQNLPTIIPSKFGTNLVYGDALVIVETTEAVALANDAVDEARNAGIGKECIGIDDMRRKRRRKRRKNLGCMVEEENIQNNFLRQKEVVGSVTSGFLSSTEETELCLCLKEGAKIENEGNYAISRFTLENTSLDKVLINTRQSKERLARDYRGLVASIATRYQGKGLSIQDLIQEGTIGLLHGAEKFDPDRGCKLSTYVYWWIKQGMIKALAKKSRLVRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRAITDQSNLILKEIIPGPVEMIPEKMFERQVMKEGVVKLLNTLNKREEEIVILYFGLNGETPLSFEEIGKLLKLSRERIRQIHAIALSKLQQNSLVDSLKFYVV*