AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155610 MtrunA17_Chr1g0166371 94.137 307 17 1 1 307 1 306 0.0 570
Msa0155610 MtrunA17_Chr1g0166361 80.992 242 46 0 66 307 1 242 8.22e-148 414
Msa0155610 MtrunA17_Chr6g0483681 45.307 309 150 6 6 306 15 312 7.78e-82 250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155610 AT5G43860.1 59.547 309 116 3 3 302 4 312 2.17e-135 386
Msa0155610 AT1G19670.1 44.178 292 157 5 8 296 18 306 7.52e-81 248

Find 57 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTAACTTGTCAAAATT+TGG 0.166079 1_4:+21162000 None:intergenic
TTATTTGCATGGTGATAATT+TGG 0.184392 1_4:-21161521 Msa0155610:CDS
GTTGCAATCAAGAGAGATTT+TGG 0.211333 1_4:+21163509 None:intergenic
GATATGGCAACATTGGTTAT+TGG 0.240114 1_4:-21161802 Msa0155610:CDS
TGGTGATAATTTGGACTTAT+TGG 0.247119 1_4:-21161512 Msa0155610:CDS
GCAACATTGGTTATTGGTTC+TGG 0.258641 1_4:-21161796 Msa0155610:CDS
TCCTCATGATTGACACCTTT+TGG 0.268999 1_4:+21161730 None:intergenic
AACTGGATCAACTCCTATTA+TGG 0.288193 1_4:+21161894 None:intergenic
TCATTCATTTGATTATGATA+TGG 0.288728 1_4:-21161818 Msa0155610:CDS
TTTCCTCTCTTAGTTGTATA+CGG 0.291769 1_4:-21162121 Msa0155610:intron
TTGGTTATTGGTTCTGGTTT+AGG 0.306609 1_4:-21161790 Msa0155610:CDS
CTGTAGCTGCAACAACAAAT+TGG 0.322311 1_4:-21162065 Msa0155610:CDS
CCTTTATCCATTCCATCAAC+TGG 0.334016 1_4:+21161877 None:intergenic
GCGAATGTGAGAAACCTTCT+TGG 0.345248 1_4:-21161699 Msa0155610:CDS
TGTTCACGTACACAACAATA+TGG 0.376449 1_4:-21163621 Msa0155610:intron
TAAATCTCTTCAGTTATATC+AGG 0.384754 1_4:+21162090 None:intergenic
GATGATACTAAAGGAGTTAG+AGG 0.384847 1_4:-21161634 Msa0155610:CDS
CCAGTTGATGGAATGGATAA+AGG 0.394237 1_4:-21161877 Msa0155610:CDS
ATTGAGCATGTTGCTTCTCA+TGG 0.404351 1_4:-21163407 Msa0155610:CDS
CTTCATTGTCATTGCTCCTC+AGG 0.404622 1_4:-21163384 Msa0155610:intron
ACTATACCACTAAGCTACTA+AGG 0.427307 1_4:-21163653 Msa0155610:CDS
GGGAAATCTCCACCTTCAAT+AGG 0.443716 1_4:+21163485 None:intergenic
AGTTATTGTTTATGTAAGAA+TGG 0.447160 1_4:-21161604 Msa0155610:CDS
TTGATTGCAACTCCTATTGA+AGG 0.448310 1_4:-21163497 Msa0155610:CDS
TTTCCTCCTTGTGCACCAAA+AGG 0.448584 1_4:-21161745 Msa0155610:CDS
CCTCCAACAAATATCCTCAT+AGG 0.448863 1_4:+21161568 None:intergenic
ATCAACCCTTAGTAGCTTAG+TGG 0.451335 1_4:+21163647 None:intergenic
TGAGGAACATAGGTGAGAAT+TGG 0.464534 1_4:+21161838 None:intergenic
ATAGGAGTTGATCCAGTTGA+TGG 0.466790 1_4:-21161889 Msa0155610:CDS
TGATTATGATATGGCAACAT+TGG 0.479916 1_4:-21161809 Msa0155610:CDS
TTATGGTCATGTTGATATGT+TGG 0.487257 1_4:-21161659 Msa0155610:CDS
AAACCTATGAGGATATTTGT+TGG 0.491421 1_4:-21161571 Msa0155610:CDS
TCTTAGTTGTATACGGTGGC+TGG 0.500060 1_4:-21162114 Msa0155610:intron
TATGTAAGAATGGTGAATCA+AGG 0.508849 1_4:-21161594 Msa0155610:CDS
ACAACAAATTGGCTATCTAA+AGG 0.518462 1_4:-21162054 Msa0155610:CDS
TTTGACAAGTTAGCACTTGG+TGG 0.520012 1_4:-21161994 Msa0155610:CDS
GATATTTGTTGGAGGAGTCA+TGG 0.522834 1_4:-21161560 Msa0155610:CDS
AGTTGATCCAGTTGATGGAA+TGG 0.545451 1_4:-21161884 Msa0155610:CDS
TTCTTGAAAGCTTATTTGCA+TGG 0.546906 1_4:-21161532 Msa0155610:CDS
ATCAAATGAATGAGGAACAT+AGG 0.554355 1_4:+21161828 None:intergenic
TAATCAAATTTCATCTCAAG+AGG 0.565000 1_4:+21161463 None:intergenic
ATATCATAATCAAATGAATG+AGG 0.572080 1_4:+21161820 None:intergenic
CCTATGAGGATATTTGTTGG+AGG 0.580420 1_4:-21161568 Msa0155610:CDS
TTAGCCATAAAATACCAAGA+AGG 0.583518 1_4:+21161685 None:intergenic
GTGAATCAAGGAAACCTATG+AGG 0.584276 1_4:-21161582 Msa0155610:CDS
ATTGGCTATAAGAGACAAGA+AGG 0.585117 1_4:-21161494 Msa0155610:CDS
GGAACATAGGTGAGAATTGG+TGG 0.587964 1_4:+21161841 None:intergenic
TTGGTGGTCATAGTCGCGGC+GGG 0.594950 1_4:-21161978 Msa0155610:CDS
ATTGCAACTCCTATTGAAGG+TGG 0.601589 1_4:-21163494 Msa0155610:CDS
CTATACCACTAAGCTACTAA+GGG 0.617726 1_4:-21163652 Msa0155610:CDS
ATGATACTAAAGGAGTTAGA+GGG 0.619958 1_4:-21161633 Msa0155610:CDS
CCTCTCTTAGTTGTATACGG+TGG 0.634151 1_4:-21162118 Msa0155610:intron
ACCAAAAGGTGTCAATCATG+AGG 0.655110 1_4:-21161731 Msa0155610:CDS
CTTGGTGGTCATAGTCGCGG+CGG 0.660141 1_4:-21161979 Msa0155610:CDS
GCACTTGGTGGTCATAGTCG+CGG 0.661508 1_4:-21161982 Msa0155610:CDS
CACATAACTGATGATAGTAG+AGG 0.669640 1_4:+21163708 None:intergenic
ATGTTGGATGATGATACTAA+AGG 0.689048 1_4:-21161643 Msa0155610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATAACATAAGAAAAT+TGG - chr1_4:21162395-21162414 Msa0155610:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_4:21162511-21162530 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_4:21162512-21162531 None:intergenic 10.0%
!! ATATTATAACATAAGAAAAT+TGG - chr1_4:21162395-21162414 Msa0155610:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_4:21162511-21162530 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_4:21162512-21162531 None:intergenic 10.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_4:21161787-21161806 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_4:21161914-21161933 None:intergenic 15.0%
!! TAATCATTAAAAACATTGTT+AGG - chr1_4:21161922-21161941 Msa0155610:CDS 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_4:21162349-21162368 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_4:21162350-21162369 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_4:21162351-21162370 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_4:21162510-21162529 None:intergenic 15.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_4:21161787-21161806 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_4:21161914-21161933 None:intergenic 15.0%
!! TAATCATTAAAAACATTGTT+AGG - chr1_4:21161922-21161941 Msa0155610:CDS 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_4:21162349-21162368 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_4:21162350-21162369 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_4:21162351-21162370 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_4:21162510-21162529 None:intergenic 15.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_4:21162040-21162059 Msa0155610:CDS 20.0%
!! GAATGAATAGATTGAATAAA+AGG - chr1_4:21162139-21162158 Msa0155610:intron 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_4:21162183-21162202 Msa0155610:intron 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_4:21162187-21162206 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_4:21162348-21162367 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_4:21162441-21162460 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_4:21162595-21162614 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_4:21162629-21162648 None:intergenic 20.0%
!! CACTTTAAATACACAAAATA+AGG - chr1_4:21162693-21162712 Msa0155610:intron 20.0%
!!! TTTCTTTTTTGTTTTTTGTC+AGG + chr1_4:21162888-21162907 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_4:21163130-21163149 None:intergenic 20.0%
!! ATATCATAATCAAATGAATG+AGG + chr1_4:21163322-21163341 None:intergenic 20.0%
!! TCATTCATTTGATTATGATA+TGG - chr1_4:21163321-21163340 Msa0155610:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_4:21163535-21163554 Msa0155610:intron 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_4:21163703-21163722 Msa0155610:exon 20.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_4:21162040-21162059 Msa0155610:CDS 20.0%
!! GAATGAATAGATTGAATAAA+AGG - chr1_4:21162139-21162158 Msa0155610:intron 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_4:21162183-21162202 Msa0155610:intron 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_4:21162187-21162206 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_4:21162348-21162367 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_4:21162441-21162460 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_4:21162595-21162614 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_4:21162629-21162648 None:intergenic 20.0%
!! CACTTTAAATACACAAAATA+AGG - chr1_4:21162693-21162712 Msa0155610:intron 20.0%
!!! TTTCTTTTTTGTTTTTTGTC+AGG + chr1_4:21162888-21162907 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_4:21163130-21163149 None:intergenic 20.0%
!! ATATCATAATCAAATGAATG+AGG + chr1_4:21163322-21163341 None:intergenic 20.0%
!! TCATTCATTTGATTATGATA+TGG - chr1_4:21163321-21163340 Msa0155610:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_4:21163535-21163554 Msa0155610:intron 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_4:21163703-21163722 Msa0155610:exon 20.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_4:21161461-21161480 Msa0155610:CDS 25.0%
! ACATTGTTAGGAGAATATAA+TGG - chr1_4:21161934-21161953 Msa0155610:CDS 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_4:21162039-21162058 Msa0155610:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_4:21162239-21162258 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_4:21162258-21162277 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_4:21162267-21162286 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_4:21162365-21162384 Msa0155610:intron 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_4:21162519-21162538 Msa0155610:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_4:21162724-21162743 Msa0155610:intron 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_4:21163052-21163071 None:intergenic 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_4:21163127-21163146 None:intergenic 25.0%
!! CTAAAATTTTCAGCCATAAT+AGG - chr1_4:21163232-21163251 Msa0155610:intron 25.0%
!! TATTTTATGGCTAAGGATTA+TGG - chr1_4:21163463-21163482 Msa0155610:CDS 25.0%
! TTATTTGCATGGTGATAATT+TGG - chr1_4:21163618-21163637 Msa0155610:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_4:21163679-21163698 None:intergenic 25.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_4:21161461-21161480 Msa0155610:CDS 25.0%
! ACATTGTTAGGAGAATATAA+TGG - chr1_4:21161934-21161953 Msa0155610:CDS 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_4:21162039-21162058 Msa0155610:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_4:21162239-21162258 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_4:21162258-21162277 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_4:21162267-21162286 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_4:21162365-21162384 Msa0155610:intron 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_4:21162519-21162538 Msa0155610:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_4:21162724-21162743 Msa0155610:intron 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_4:21163052-21163071 None:intergenic 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_4:21163127-21163146 None:intergenic 25.0%
!! CTAAAATTTTCAGCCATAAT+AGG - chr1_4:21163232-21163251 Msa0155610:intron 25.0%
!! TATTTTATGGCTAAGGATTA+TGG - chr1_4:21163463-21163482 Msa0155610:CDS 25.0%
! TTATTTGCATGGTGATAATT+TGG - chr1_4:21163618-21163637 Msa0155610:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_4:21163679-21163698 None:intergenic 25.0%
TTAGCACACATGAACTATAT+AGG + chr1_4:21161578-21161597 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_4:21161677-21161696 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_4:21162233-21162252 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_4:21162272-21162291 Msa0155610:intron 30.0%
AAAATGTTTATTTGGGGGTT+TGG + chr1_4:21162343-21162362 None:intergenic 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_4:21162469-21162488 None:intergenic 30.0%
GATTCGTTGTAGTGAAAAAA+TGG + chr1_4:21162483-21162502 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_4:21162552-21162571 Msa0155610:intron 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_4:21162979-21162998 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_4:21162982-21163001 Msa0155610:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_4:21162989-21163008 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_4:21162990-21163009 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_4:21163018-21163037 Msa0155610:intron 30.0%
ACAACAAATTGGCTATCTAA+AGG - chr1_4:21163085-21163104 Msa0155610:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_4:21163142-21163161 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_4:21163142-21163161 Msa0155610:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_4:21163314-21163333 None:intergenic 30.0%
TGATTATGATATGGCAACAT+TGG - chr1_4:21163330-21163349 Msa0155610:intron 30.0%
! GAAACCTTCTTGGTATTTTA+TGG - chr1_4:21163450-21163469 Msa0155610:CDS 30.0%
TTAGCCATAAAATACCAAGA+AGG + chr1_4:21163457-21163476 None:intergenic 30.0%
! TTCTTGGTATTTTATGGCTA+AGG - chr1_4:21163456-21163475 Msa0155610:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_4:21163480-21163499 Msa0155610:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_4:21163496-21163515 Msa0155610:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_4:21163506-21163525 Msa0155610:CDS 30.0%
TATGTAAGAATGGTGAATCA+AGG - chr1_4:21163545-21163564 Msa0155610:intron 30.0%
AAACCTATGAGGATATTTGT+TGG - chr1_4:21163568-21163587 Msa0155610:intron 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_4:21163607-21163626 Msa0155610:intron 30.0%
TGGTGATAATTTGGACTTAT+TGG - chr1_4:21163627-21163646 Msa0155610:CDS 30.0%
TTAGCACACATGAACTATAT+AGG + chr1_4:21161578-21161597 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_4:21161677-21161696 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_4:21162233-21162252 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_4:21162272-21162291 Msa0155610:intron 30.0%
AAAATGTTTATTTGGGGGTT+TGG + chr1_4:21162343-21162362 None:intergenic 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_4:21162469-21162488 None:intergenic 30.0%
GATTCGTTGTAGTGAAAAAA+TGG + chr1_4:21162483-21162502 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_4:21162552-21162571 Msa0155610:intron 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_4:21162979-21162998 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_4:21162982-21163001 Msa0155610:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_4:21162989-21163008 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_4:21162990-21163009 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_4:21163018-21163037 Msa0155610:intron 30.0%
ACAACAAATTGGCTATCTAA+AGG - chr1_4:21163085-21163104 Msa0155610:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_4:21163142-21163161 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_4:21163142-21163161 Msa0155610:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_4:21163314-21163333 None:intergenic 30.0%
TGATTATGATATGGCAACAT+TGG - chr1_4:21163330-21163349 Msa0155610:intron 30.0%
! GAAACCTTCTTGGTATTTTA+TGG - chr1_4:21163450-21163469 Msa0155610:CDS 30.0%
TTAGCCATAAAATACCAAGA+AGG + chr1_4:21163457-21163476 None:intergenic 30.0%
! TTCTTGGTATTTTATGGCTA+AGG - chr1_4:21163456-21163475 Msa0155610:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_4:21163480-21163499 Msa0155610:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_4:21163496-21163515 Msa0155610:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_4:21163506-21163525 Msa0155610:CDS 30.0%
TATGTAAGAATGGTGAATCA+AGG - chr1_4:21163545-21163564 Msa0155610:intron 30.0%
AAACCTATGAGGATATTTGT+TGG - chr1_4:21163568-21163587 Msa0155610:intron 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_4:21163607-21163626 Msa0155610:intron 30.0%
TGGTGATAATTTGGACTTAT+TGG - chr1_4:21163627-21163646 Msa0155610:CDS 30.0%
CACATAACTGATGATAGTAG+AGG + chr1_4:21161434-21161453 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_4:21161486-21161505 Msa0155610:CDS 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_4:21161487-21161506 Msa0155610:CDS 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_4:21161518-21161537 Msa0155610:CDS 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_4:21161633-21161652 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_4:21161642-21161661 Msa0155610:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_4:21161678-21161697 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_4:21161675-21161694 Msa0155610:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_4:21162031-21162050 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_4:21162277-21162296 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_4:21162551-21162570 Msa0155610:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_4:21162852-21162871 None:intergenic 35.0%
!!! TTTTTTGTCAGGTAGCCTAT+TGG + chr1_4:21162877-21162896 None:intergenic 35.0%
AACTGGATCAACTCCTATTA+TGG + chr1_4:21163248-21163267 None:intergenic 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_4:21163337-21163356 Msa0155610:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_4:21163349-21163368 Msa0155610:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_4:21163505-21163524 Msa0155610:CDS 35.0%
ATTGGCTATAAGAGACAAGA+AGG - chr1_4:21163645-21163664 Msa0155610:CDS 35.0%
CACATAACTGATGATAGTAG+AGG + chr1_4:21161434-21161453 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_4:21161486-21161505 Msa0155610:CDS 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_4:21161487-21161506 Msa0155610:CDS 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_4:21161518-21161537 Msa0155610:CDS 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_4:21161633-21161652 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_4:21161642-21161661 Msa0155610:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_4:21161678-21161697 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_4:21161675-21161694 Msa0155610:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_4:21162031-21162050 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_4:21162277-21162296 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_4:21162551-21162570 Msa0155610:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_4:21162852-21162871 None:intergenic 35.0%
!!! TTTTTTGTCAGGTAGCCTAT+TGG + chr1_4:21162877-21162896 None:intergenic 35.0%
AACTGGATCAACTCCTATTA+TGG + chr1_4:21163248-21163267 None:intergenic 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_4:21163337-21163356 Msa0155610:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_4:21163349-21163368 Msa0155610:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_4:21163505-21163524 Msa0155610:CDS 35.0%
ATTGGCTATAAGAGACAAGA+AGG - chr1_4:21163645-21163664 Msa0155610:CDS 35.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_4:21161495-21161514 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_4:21161627-21161646 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_4:21161630-21161649 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_4:21161645-21161664 Msa0155610:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_4:21161732-21161751 Msa0155610:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_4:21161774-21161793 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_4:21161822-21161841 Msa0155610:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_4:21161823-21161842 Msa0155610:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_4:21162028-21162047 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_4:21162535-21162554 Msa0155610:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_4:21162772-21162791 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_4:21162773-21162792 None:intergenic 40.0%
TATCACGGACATTATGTGCA+GGG - chr1_4:21162794-21162813 Msa0155610:intron 40.0%
ACACATAATGTGTGGAGATG+TGG + chr1_4:21162844-21162863 None:intergenic 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_4:21162859-21162878 Msa0155610:intron 40.0%
CTGTAGCTGCAACAACAAAT+TGG - chr1_4:21163074-21163093 Msa0155610:intron 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_4:21163145-21163164 Msa0155610:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_4:21163250-21163269 Msa0155610:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_4:21163255-21163274 Msa0155610:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_4:21163265-21163284 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_4:21163262-21163281 Msa0155610:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_4:21163304-21163323 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_4:21163343-21163362 Msa0155610:intron 40.0%
!! ACCAAAAGGTGTCAATCATG+AGG - chr1_4:21163408-21163427 Msa0155610:CDS 40.0%
! TCCTCATGATTGACACCTTT+TGG + chr1_4:21163412-21163431 None:intergenic 40.0%
GTGAATCAAGGAAACCTATG+AGG - chr1_4:21163557-21163576 Msa0155610:intron 40.0%
CCTCCAACAAATATCCTCAT+AGG + chr1_4:21163574-21163593 None:intergenic 40.0%
! CCTATGAGGATATTTGTTGG+AGG - chr1_4:21163571-21163590 Msa0155610:intron 40.0%
! GATATTTGTTGGAGGAGTCA+TGG - chr1_4:21163579-21163598 Msa0155610:intron 40.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_4:21161495-21161514 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_4:21161627-21161646 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_4:21161630-21161649 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_4:21161645-21161664 Msa0155610:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_4:21161732-21161751 Msa0155610:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_4:21161774-21161793 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_4:21161822-21161841 Msa0155610:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_4:21161823-21161842 Msa0155610:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_4:21162028-21162047 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_4:21162535-21162554 Msa0155610:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_4:21162772-21162791 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_4:21162773-21162792 None:intergenic 40.0%
TATCACGGACATTATGTGCA+GGG - chr1_4:21162794-21162813 Msa0155610:intron 40.0%
ACACATAATGTGTGGAGATG+TGG + chr1_4:21162844-21162863 None:intergenic 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_4:21162859-21162878 Msa0155610:intron 40.0%
CTGTAGCTGCAACAACAAAT+TGG - chr1_4:21163074-21163093 Msa0155610:intron 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_4:21163145-21163164 Msa0155610:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_4:21163250-21163269 Msa0155610:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_4:21163255-21163274 Msa0155610:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_4:21163265-21163284 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_4:21163262-21163281 Msa0155610:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_4:21163304-21163323 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_4:21163343-21163362 Msa0155610:intron 40.0%
!! ACCAAAAGGTGTCAATCATG+AGG - chr1_4:21163408-21163427 Msa0155610:CDS 40.0%
! TCCTCATGATTGACACCTTT+TGG + chr1_4:21163412-21163431 None:intergenic 40.0%
GTGAATCAAGGAAACCTATG+AGG - chr1_4:21163557-21163576 Msa0155610:intron 40.0%
CCTCCAACAAATATCCTCAT+AGG + chr1_4:21163574-21163593 None:intergenic 40.0%
! CCTATGAGGATATTTGTTGG+AGG - chr1_4:21163571-21163590 Msa0155610:intron 40.0%
! GATATTTGTTGGAGGAGTCA+TGG - chr1_4:21163579-21163598 Msa0155610:intron 40.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_4:21161657-21161676 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_4:21161755-21161774 Msa0155610:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_4:21162299-21162318 Msa0155610:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_4:21162304-21162323 None:intergenic 45.0%
ATCCCGTAATTGTAGCCAGT+TGG - chr1_4:21162767-21162786 Msa0155610:intron 45.0%
!! TAGCCAGTTGGTAGCTATCA+CGG - chr1_4:21162779-21162798 Msa0155610:intron 45.0%
CTATCACGGACATTATGTGC+AGG - chr1_4:21162793-21162812 Msa0155610:intron 45.0%
ATCACGGACATTATGTGCAG+GGG - chr1_4:21162795-21162814 Msa0155610:intron 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_4:21163024-21163043 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_4:21163021-21163040 Msa0155610:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_4:21163025-21163044 Msa0155610:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_4:21163301-21163320 None:intergenic 45.0%
TTTCCTCCTTGTGCACCAAA+AGG - chr1_4:21163394-21163413 Msa0155610:CDS 45.0%
!! TTGACACCTTTTGGTGCACA+AGG + chr1_4:21163403-21163422 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_4:21163440-21163459 Msa0155610:CDS 45.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_4:21161657-21161676 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_4:21161755-21161774 Msa0155610:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_4:21162299-21162318 Msa0155610:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_4:21162304-21162323 None:intergenic 45.0%
ATCCCGTAATTGTAGCCAGT+TGG - chr1_4:21162767-21162786 Msa0155610:intron 45.0%
!! TAGCCAGTTGGTAGCTATCA+CGG - chr1_4:21162779-21162798 Msa0155610:intron 45.0%
CTATCACGGACATTATGTGC+AGG - chr1_4:21162793-21162812 Msa0155610:intron 45.0%
ATCACGGACATTATGTGCAG+GGG - chr1_4:21162795-21162814 Msa0155610:intron 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_4:21163024-21163043 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_4:21163021-21163040 Msa0155610:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_4:21163025-21163044 Msa0155610:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_4:21163301-21163320 None:intergenic 45.0%
TTTCCTCCTTGTGCACCAAA+AGG - chr1_4:21163394-21163413 Msa0155610:CDS 45.0%
!! TTGACACCTTTTGGTGCACA+AGG + chr1_4:21163403-21163422 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_4:21163440-21163459 Msa0155610:CDS 45.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_4:21162305-21162324 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_4:21162311-21162330 None:intergenic 50.0%
TGTCCGTGATAGCTACCAAC+TGG + chr1_4:21162785-21162804 None:intergenic 50.0%
! AGAATCTGAGGTTCGAACCC+CGG + chr1_4:21162821-21162840 None:intergenic 50.0%
GTGGAGATGTGGAGAATCTG+AGG + chr1_4:21162833-21162852 None:intergenic 50.0%
!! ACACCTTTTGGTGCACAAGG+AGG + chr1_4:21163400-21163419 None:intergenic 50.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_4:21162305-21162324 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_4:21162311-21162330 None:intergenic 50.0%
TGTCCGTGATAGCTACCAAC+TGG + chr1_4:21162785-21162804 None:intergenic 50.0%
! AGAATCTGAGGTTCGAACCC+CGG + chr1_4:21162821-21162840 None:intergenic 50.0%
GTGGAGATGTGGAGAATCTG+AGG + chr1_4:21162833-21162852 None:intergenic 50.0%
!! ACACCTTTTGGTGCACAAGG+AGG + chr1_4:21163400-21163419 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_4:21162318-21162337 None:intergenic 55.0%
! TGGGGGTTTGGTAGCTCAAC+TGG + chr1_4:21162331-21162350 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_4:21163157-21163176 Msa0155610:intron 55.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_4:21162318-21162337 None:intergenic 55.0%
! TGGGGGTTTGGTAGCTCAAC+TGG + chr1_4:21162331-21162350 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_4:21163157-21163176 Msa0155610:intron 55.0%
CGGACATTATGTGCAGGGGC+CGG - chr1_4:21162799-21162818 Msa0155610:intron 60.0%
GGACATTATGTGCAGGGGCC+GGG - chr1_4:21162800-21162819 Msa0155610:intron 60.0%
GACATTATGTGCAGGGGCCG+GGG - chr1_4:21162801-21162820 Msa0155610:intron 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_4:21163160-21163179 Msa0155610:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_4:21163161-21163180 Msa0155610:intron 60.0%
CGGACATTATGTGCAGGGGC+CGG - chr1_4:21162799-21162818 Msa0155610:intron 60.0%
GGACATTATGTGCAGGGGCC+GGG - chr1_4:21162800-21162819 Msa0155610:intron 60.0%
GACATTATGTGCAGGGGCCG+GGG - chr1_4:21162801-21162820 Msa0155610:intron 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_4:21163160-21163179 Msa0155610:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_4:21163161-21163180 Msa0155610:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 21161403 21163758 21161403 ID=Msa0155610;Name=Msa0155610
chr1_4 mRNA 21161403 21163758 21161403 ID=Msa0155610-mRNA-1;Parent=Msa0155610;Name=Msa0155610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=46|1|1|1|1|1|3|50|307
chr1_4 exon 21161403 21162130 21161403 ID=Msa0155610-mRNA-1:exon:7621;Parent=Msa0155610-mRNA-1
chr1_4 exon 21163385 21163539 21163385 ID=Msa0155610-mRNA-1:exon:7620;Parent=Msa0155610-mRNA-1
chr1_4 exon 21163622 21163758 21163622 ID=Msa0155610-mRNA-1:exon:7619;Parent=Msa0155610-mRNA-1
chr1_4 five_prime_UTR 21163713 21163758 21163713 ID=Msa0155610-mRNA-1:five_prime_utr;Parent=Msa0155610-mRNA-1
chr1_4 CDS 21163622 21163712 21163622 ID=Msa0155610-mRNA-1:cds;Parent=Msa0155610-mRNA-1
chr1_4 CDS 21163385 21163539 21163385 ID=Msa0155610-mRNA-1:cds;Parent=Msa0155610-mRNA-1
chr1_4 CDS 21161453 21162130 21161453 ID=Msa0155610-mRNA-1:cds;Parent=Msa0155610-mRNA-1
chr1_4 three_prime_UTR 21161403 21161452 21161403 ID=Msa0155610-mRNA-1:three_prime_utr;Parent=Msa0155610-mRNA-1
Gene Sequence

>Msa0155610

ATGTGTTCTTCTGTTAGTAATGTTTTTGAAACTGGTAACTATACCACTAAGCTACTAAGGGTTGATTCTTGTTCACGTACACAACAATATGTTCCACCACCAAAATCTCTCTTGATTGCAACTCCTATTGAAGGTGGAGATTTCCCACTTCTACTTTTTCTACATGGCTATCTTCTTTTGAACTCATTTTATTCTCAGCTTATTGAGCATGTTGCTTCTCATGGCTTCATTGTCATTGCTCCTCAGTTGTATACGGTGGCTGGACCTGATATAACTGAAGAGATTTACTCTGTAGCTGCAACAACAAATTGGCTATCTAAAGGACTTAGCAAGATTCTTCCACCAAACATAAAACCAAATTTTGACAAGTTAGCACTTGGTGGTCATAGTCGCGGCGGGAAAACATCATTTGCTATTGCTCTAAGAAAATTAAACATCACAACTGATCTAAAATTTTCAGCCATAATAGGAGTTGATCCAGTTGATGGAATGGATAAAGGAAAGCAAACATCACCACCAATTCTCACCTATGTTCCTCATTCATTTGATTATGATATGGCAACATTGGTTATTGGTTCTGGTTTAGGTGATGTGAAAAAGAACTCTTTGTTTCCTCCTTGTGCACCAAAAGGTGTCAATCATGAGGATTTTTTTAGCGAATGTGAGAAACCTTCTTGGTATTTTATGGCTAAGGATTATGGTCATGTTGATATGTTGGATGATGATACTAAAGGAGTTAGAGGGAAAGTTAGTTATTGTTTATGTAAGAATGGTGAATCAAGGAAACCTATGAGGATATTTGTTGGAGGAGTCATGGTTGCATTCTTGAAAGCTTATTTGCATGGTGATAATTTGGACTTATTGGCTATAAGAGACAAGAAGGTGAGTGTACCTCTTGAGATGAAATTTGATTATTTTGTATAA

Protein sequence

>Msa0155610

MCSSVSNVFETGNYTTKLLRVDSCSRTQQYVPPPKSLLIATPIEGGDFPLLLFLHGYLLLNSFYSQLIEHVASHGFIVIAPQLYTVAGPDITEEIYSVAATTNWLSKGLSKILPPNIKPNFDKLALGGHSRGGKTSFAIALRKLNITTDLKFSAIIGVDPVDGMDKGKQTSPPILTYVPHSFDYDMATLVIGSGLGDVKKNSLFPPCAPKGVNHEDFFSECEKPSWYFMAKDYGHVDMLDDDTKGVRGKVSYCLCKNGESRKPMRIFVGGVMVAFLKAYLHGDNLDLLAIRDKKVSVPLEMKFDYFV*