AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1142020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142020 MtrunA17_Chr7g0223631 77.147 617 64 4 3 556 1 603 0.0 924
Msa1142020 MtrunA17_Chr7g0223711 74.272 618 95 3 3 556 1 618 0.0 922
Msa1142020 MtrunA17_Chr8g0350731 74.682 628 96 2 3 567 29 656 0.0 921
Msa1142020 MtrunA17_Chr7g0223751 71.292 627 117 2 3 566 1 627 0.0 896
Msa1142020 MtrunA17_Chr7g0223701 71.136 634 111 5 3 564 1 634 0.0 876
Msa1142020 MtrunA17_Chr7g0223621 70.098 612 120 2 3 551 1 612 0.0 853
Msa1142020 MtrunA17_Chr7g0248131 68.160 625 129 6 3 558 1 624 0.0 827
Msa1142020 MtrunA17_Chr7g0223031 67.647 612 135 2 3 551 1 612 0.0 824
Msa1142020 MtrunA17_Chr7g0223731 67.752 614 135 3 3 553 1 614 0.0 823
Msa1142020 MtrunA17_Chr7g0223741 71.248 553 133 2 3 529 1 553 0.0 817
Msa1142020 MtrunA17_Chr7g0248151 68.760 621 126 4 3 556 1 620 0.0 816
Msa1142020 MtrunA17_Chr2g0293581 68.885 556 145 4 3 530 1 556 0.0 777
Msa1142020 MtrunA17_Chr7g0221661 67.870 554 152 2 3 530 1 554 0.0 766
Msa1142020 MtrunA17_Chr7g0223781 68.592 554 146 3 3 530 1 552 0.0 763
Msa1142020 MtrunA17_Chr7g0262821 67.568 555 150 5 3 529 1 553 0.0 759
Msa1142020 MtrunA17_Chr7g0223801 67.089 553 156 2 3 530 1 552 0.0 758
Msa1142020 MtrunA17_Chr7g0223181 67.568 555 150 5 3 529 1 553 0.0 758
Msa1142020 MtrunA17_Chr5g0427901 63.866 595 173 4 3 560 1 590 0.0 755
Msa1142020 MtrunA17_Chr4g0031321 64.068 590 173 7 3 555 1 588 0.0 753
Msa1142020 MtrunA17_Chr7g0223681 74.004 527 74 2 93 556 2 528 0.0 753
Msa1142020 MtrunA17_Chr4g0031301 63.898 590 174 7 3 555 1 588 0.0 752
Msa1142020 MtrunA17_Chr2g0298851 64.818 577 169 5 3 546 1 576 0.0 750
Msa1142020 MtrunA17_Chr7g0223291 66.847 555 154 5 3 529 1 553 0.0 750
Msa1142020 MtrunA17_Chr2g0298861 65.194 566 159 4 3 530 1 566 0.0 742
Msa1142020 MtrunA17_Chr7g0223721 61.039 616 175 3 3 553 1 616 0.0 740
Msa1142020 MtrunA17_Chr4g0040931 65.343 554 166 2 3 530 1 554 0.0 738
Msa1142020 MtrunA17_Chr4g0073741 65.766 555 159 6 3 529 1 552 0.0 736
Msa1142020 MtrunA17_Chr7g0233311 65.766 555 163 2 3 530 1 555 0.0 735
Msa1142020 MtrunA17_Chr7g0223851 65.280 553 166 2 3 529 10 562 0.0 729
Msa1142020 MtrunA17_Chr7g0225671 63.265 588 176 7 5 556 12 595 0.0 726
Msa1142020 MtrunA17_Chr7g0223541 65.827 556 126 3 76 567 31 586 0.0 725
Msa1142020 MtrunA17_Chr2g0287631 65.714 560 165 3 3 535 1 560 0.0 723
Msa1142020 MtrunA17_Chr7g0217971 63.653 553 152 2 3 530 1 529 0.0 710
Msa1142020 MtrunA17_Chr2g0296391 66.288 528 151 3 3 503 1 528 0.0 704
Msa1142020 MtrunA17_Chr7g0223821 65.225 555 164 3 3 529 1 554 0.0 702
Msa1142020 MtrunA17_Chr7g0233301 62.523 555 150 3 3 530 1 524 0.0 684
Msa1142020 MtrunA17_Chr4g0012541 59.129 597 200 5 3 564 1 588 0.0 676
Msa1142020 MtrunA17_Chr8g0390821 58.320 607 159 9 3 530 1 592 0.0 661
Msa1142020 MtrunA17_Chr7g0223831 60.721 555 162 5 3 530 1 526 0.0 656
Msa1142020 MtrunA17_Chr6g0462601 59.567 554 195 4 3 529 1 552 0.0 651
Msa1142020 MtrunA17_Chr2g0293601 63.707 518 127 5 3 493 1 484 0.0 649
Msa1142020 MtrunA17_Chr6g0462681 58.664 554 200 4 3 529 1 552 0.0 643
Msa1142020 MtrunA17_Chr7g0215261 59.099 555 165 5 3 530 1 520 0.0 639
Msa1142020 MtrunA17_Chr7g0228281 56.993 572 216 5 3 564 62 613 0.0 633
Msa1142020 MtrunA17_Chr2g0331381 60.150 532 126 4 12 518 7 477 0.0 630
Msa1142020 MtrunA17_Chr6g0462711 57.706 558 203 5 10 535 9 565 0.0 620
Msa1142020 MtrunA17_Chr6g0462641 57.245 559 205 5 3 529 1 557 0.0 618
Msa1142020 MtrunA17_Chr6g0462771 57.609 552 200 5 10 529 8 557 0.0 614
Msa1142020 MtrunA17_Chr2g0284681 54.609 575 220 8 11 551 8 575 0.0 605
Msa1142020 MtrunA17_Chr8g0388671 53.273 550 222 9 9 529 36 579 0.0 562
Msa1142020 MtrunA17_Chr8g0388761 52.909 550 224 9 9 529 36 579 0.0 561
Msa1142020 MtrunA17_Chr2g0293561 69.786 374 88 1 3 351 1 374 0.0 556
Msa1142020 MtrunA17_Chr6g0462611 56.250 480 183 3 76 529 22 500 0.0 531
Msa1142020 MtrunA17_Chr1g0166551 52.294 545 124 4 11 530 5 438 0.0 526
Msa1142020 MtrunA17_Chr2g0299821 58.753 417 138 4 3 387 1 415 4.42e-168 486
Msa1142020 MtrunA17_Chr2g0299921 66.497 394 103 3 5 373 1023 1412 7.53e-168 521
Msa1142020 MtrunA17_Chr2g0299921 64.721 394 109 4 5 372 1407 1796 8.43e-153 480
Msa1142020 MtrunA17_Chr2g0299791 64.524 389 109 3 3 366 1034 1418 9.52e-164 503
Msa1142020 MtrunA17_Chr2g0299851 62.564 390 117 3 3 367 1030 1415 2.38e-161 496
Msa1142020 MtrunA17_Chr2g0293271 55.530 434 98 4 23 431 43 406 7.55e-157 454
Msa1142020 MtrunA17_Chr1g0151991 72.509 291 80 0 3 293 1 291 5.31e-155 445
Msa1142020 MtrunA17_Chr2g0299881 61.671 407 119 6 4 377 1031 1433 1.17e-154 479
Msa1142020 MtrunA17_Chr2g0299881 59.701 67 27 0 186 252 1409 1475 3.72e-18 89.0
Msa1142020 MtrunA17_Chr7g0245521 73.993 273 71 0 3 275 1 273 2.37e-153 440
Msa1142020 MtrunA17_Chr6g0462861 46.099 564 247 11 3 530 1 543 1.30e-152 452
Msa1142020 MtrunA17_Chr2g0279901 46.043 556 251 12 12 535 57 595 1.62e-151 450
Msa1142020 MtrunA17_Chr4g0049501 45.144 556 257 11 12 535 54 593 5.21e-150 446
Msa1142020 MtrunA17_Chr2g0277021 43.794 564 265 13 12 543 72 615 2.29e-136 412
Msa1142020 MtrunA17_Chr7g0223671 85.946 185 26 0 76 260 8 192 2.90e-115 340
Msa1142020 MtrunA17_Chr1g0188601 75.916 191 46 0 94 284 1 191 1.39e-104 313
Msa1142020 MtrunA17_Chr7g0245531 54.248 306 101 2 289 555 9 314 1.10e-96 297
Msa1142020 MtrunA17_Chr1g0152001 63.025 238 87 1 292 529 1 237 7.77e-95 292
Msa1142020 MtrunA17_Chr7g0223761 49.363 314 92 3 243 530 3 275 4.85e-90 281
Msa1142020 MtrunA17_Chr6g0462631 46.364 330 103 6 93 393 13 297 3.83e-84 264
Msa1142020 MtrunA17_Chr1g0188611 62.174 230 86 1 302 530 4 233 9.87e-81 255
Msa1142020 MtrunA17_Chr6g0462751 43.732 343 108 5 76 390 19 304 1.23e-79 253
Msa1142020 MtrunA17_Chr7g0223771 74.026 154 40 0 95 248 1 154 2.08e-79 247
Msa1142020 MtrunA17_Chr6g0462791 68.000 175 55 1 111 285 2 175 5.48e-78 243
Msa1142020 MtrunA17_Chr4g0046881 75.172 145 33 1 133 277 10 151 2.56e-71 225
Msa1142020 MtrunA17_Chr5g0394391 34.127 504 279 14 10 470 28 521 1.60e-70 237
Msa1142020 MtrunA17_Chr4g0004331 34.804 408 232 6 12 391 4 405 3.15e-68 236
Msa1142020 MtrunA17_Chr2g0331901 32.346 439 255 7 12 412 4 438 2.10e-67 234
Msa1142020 MtrunA17_Chr5g0444001 32.009 428 256 7 12 408 4 427 4.01e-64 219
Msa1142020 MtrunA17_Chr3g0098761 31.178 433 255 7 12 409 4 428 1.69e-63 222
Msa1142020 MtrunA17_Chr7g0223861 74.046 131 34 0 80 210 4 134 2.55e-63 204
Msa1142020 MtrunA17_Chr6g0462701 55.556 180 56 1 93 272 13 168 3.39e-57 189
Msa1142020 MtrunA17_Chr4g0064621 32.692 520 292 15 10 479 139 650 1.07e-50 185
Msa1142020 MtrunA17_Chr4g0046871 76.699 103 24 0 310 412 3 105 1.09e-47 161
Msa1142020 MtrunA17_Chr6g0481391 63.934 122 41 1 40 161 13 131 1.42e-46 159
Msa1142020 MtrunA17_Chr6g0462691 53.901 141 64 1 300 439 2 142 2.71e-44 154
Msa1142020 MtrunA17_Chr4g0060241 29.492 512 294 19 10 475 19 509 4.58e-44 164
Msa1142020 MtrunA17_Chr5g0394221 37.956 274 154 6 267 527 50 320 7.45e-44 159
Msa1142020 MtrunA17_Chr7g0223691 90.411 73 7 0 3 75 1 73 1.08e-41 144
Msa1142020 MtrunA17_Chr5g0394231 36.323 223 91 4 76 297 5 177 1.03e-40 145
Msa1142020 MtrunA17_Chr3g0120101 26.683 401 249 7 12 370 27 424 1.44e-40 157
Msa1142020 MtrunA17_Chr7g0245541 51.049 143 69 1 394 535 1 143 1.34e-37 137
Msa1142020 MtrunA17_Chr5g0442171 32.229 332 174 11 172 464 1 320 1.19e-34 133
Msa1142020 MtrunA17_Chr1g0188591 78.082 73 16 0 3 75 1 73 4.22e-33 121
Msa1142020 MtrunA17_Chr6g0481381 71.622 74 21 0 178 251 1 74 7.28e-31 119
Msa1142020 MtrunA17_Chr6g0462621 75.342 73 16 1 3 75 1 71 5.74e-30 112
Msa1142020 MtrunA17_Chr7g0223791 69.512 82 17 3 58 139 18 91 1.33e-27 109
Msa1142020 MtrunA17_Chr7g0223791 34.188 117 64 3 416 530 57 162 1.54e-12 66.2
Msa1142020 MtrunA17_Chr7g0221651 51.807 83 40 0 217 299 1 83 1.21e-22 92.4
Msa1142020 MtrunA17_Chr7g0223661 46.552 116 19 1 292 407 1 73 3.63e-20 85.1
Msa1142020 MtrunA17_Chr2g0284661 31.527 203 72 5 227 426 5 143 7.16e-19 83.6
Msa1142020 MtrunA17_Chr6g0462801 56.923 65 23 1 300 359 2 66 1.40e-15 72.0
Msa1142020 MtrunA17_Chr4g0064651 41.748 103 57 3 365 466 21 121 3.81e-14 69.3
Msa1142020 MtrunA17_Chr5g0442161 30.573 157 102 4 7 159 24 177 4.36e-13 67.8
Msa1142020 MtrunA17_Chr7g0223881 78.049 41 8 1 300 340 44 83 5.76e-13 64.7
Msa1142020 MtrunA17_Chr2g0299941 51.562 64 29 1 367 430 16 77 2.24e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142020 AT3G12580.1 68.108 555 147 5 3 529 1 553 0.0 763
Msa1142020 AT5G02500.1 66.486 555 156 5 3 529 1 553 0.0 752
Msa1142020 AT3G09440.1 66.847 555 154 5 3 529 1 553 0.0 748
Msa1142020 AT3G09440.4 66.847 555 154 5 3 529 1 553 0.0 748
Msa1142020 AT3G09440.2 66.847 555 154 5 3 529 1 553 0.0 748
Msa1142020 AT3G09440.3 66.847 555 154 5 3 529 1 553 0.0 748
Msa1142020 AT5G02490.1 66.306 555 157 5 3 529 1 553 0.0 748
Msa1142020 AT1G56410.1 65.766 555 160 5 3 529 1 553 0.0 738
Msa1142020 AT1G16030.1 64.865 555 164 6 3 529 1 552 0.0 723
Msa1142020 AT5G42020.1 54.727 550 214 9 9 529 35 578 0.0 577
Msa1142020 AT5G42020.3 54.727 550 214 9 9 529 40 583 0.0 577
Msa1142020 AT5G28540.1 54.545 550 215 9 9 529 35 578 0.0 576
Msa1142020 AT5G02500.2 69.949 396 91 3 3 372 1 394 0.0 567
Msa1142020 AT1G09080.2 53.694 555 223 7 9 535 40 588 0.0 551
Msa1142020 AT1G09080.1 53.694 555 223 7 9 535 50 598 0.0 551
Msa1142020 AT5G42020.2 54.737 475 181 8 9 455 35 503 1.04e-169 495
Msa1142020 AT5G09590.1 44.964 556 258 11 12 535 60 599 3.11e-147 440
Msa1142020 AT4G37910.1 45.144 556 257 11 12 535 55 594 7.86e-143 429
Msa1142020 AT4G37910.2 45.144 556 257 11 12 535 55 594 7.86e-143 429
Msa1142020 AT4G24280.1 43.972 564 264 13 12 543 81 624 6.87e-137 414
Msa1142020 AT5G49910.1 43.972 564 264 13 12 543 81 624 3.26e-136 413
Msa1142020 AT1G11660.4 27.932 648 355 15 12 566 4 632 1.68e-70 241
Msa1142020 AT1G11660.3 27.932 648 355 15 12 566 4 632 1.68e-70 241
Msa1142020 AT1G11660.1 27.932 648 355 15 12 566 4 632 1.68e-70 241
Msa1142020 AT1G79930.2 34.975 406 234 5 12 391 4 405 1.71e-70 242
Msa1142020 AT1G79930.1 34.975 406 234 5 12 391 4 405 4.28e-70 241
Msa1142020 AT1G79920.1 35.049 408 231 6 12 391 4 405 1.25e-69 238
Msa1142020 AT1G79920.3 35.049 408 231 6 12 391 4 405 1.28e-69 238
Msa1142020 AT1G79920.2 35.049 408 231 6 12 391 4 405 1.28e-69 238
Msa1142020 AT1G79920.4 35.049 408 231 6 12 391 4 405 1.28e-69 238
Msa1142020 AT1G11660.2 28.314 611 328 14 49 566 2 595 2.58e-64 224
Msa1142020 AT2G32120.1 32.031 512 294 15 10 483 29 524 6.91e-62 214
Msa1142020 AT2G32120.2 32.031 512 294 15 10 483 29 524 6.91e-62 214
Msa1142020 AT4G16660.1 26.095 525 318 17 8 470 23 539 9.23e-44 167
Msa1142020 AT4G16660.2 25.714 525 320 16 8 470 47 563 1.09e-43 167

Find 155 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTGGCTTCAAAATT+TGG 0.122656 7_4:+15842698 None:intergenic
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_4:+15841427 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_4:-15841947 Msa1142020:CDS
TTGGGGAGTCTTCTCCTATT+TGG 0.160515 7_4:-15843246 Msa1142020:five_prime_UTR
AACCCAATCAACACTGTATT+TGG 0.172484 7_4:-15842441 Msa1142020:intron
GGTTAACCTGGGTATTAATT+TGG 0.175671 7_4:-15843204 Msa1142020:five_prime_UTR
TCAACCTTCAGTTGAAATTA+AGG 0.190362 7_4:-15840862 Msa1142020:CDS
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 7_4:-15841157 Msa1142020:CDS
TGTAGTGTATAGTAGTATTT+TGG 0.234038 7_4:+15842735 None:intergenic
TGGCCCTTTAAGGTCATTTC+CGG 0.243786 7_4:-15841937 Msa1142020:CDS
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_4:-15842003 Msa1142020:intron
CTGTCTTGTTGATGCTAAAA+TGG 0.256497 7_4:-15841204 Msa1142020:CDS
TATATTGTATCATATTATAT+TGG 0.262631 7_4:-15843265 Msa1142020:five_prime_UTR
TGTAATAGCTGCTTCACTTT+AGG 0.274669 7_4:+15841131 None:intergenic
CCTTGAAATTGTCAGCTTCC+TGG 0.285031 7_4:+15840613 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.292577 7_4:-15840669 Msa1142020:CDS
ATATTGTATCATATTATATT+GGG 0.309662 7_4:-15843264 Msa1142020:five_prime_UTR
AAATGAGGCGTAAAGTAAAA+TGG 0.315547 7_4:-15843335 Msa1142020:five_prime_UTR
GAGGGACAATTTCATGTTCT+TGG 0.322536 7_4:-15843393 Msa1142020:five_prime_UTR
TTTGTAGAGAAGATTTAAAT+TGG 0.339497 7_4:+15842685 None:intergenic
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_4:-15841068 Msa1142020:CDS
AGCACCGGAAATGACCTTAA+AGG 0.349583 7_4:+15841933 None:intergenic
CTTACTCGTGTGTTGGAGTA+TGG 0.355368 7_4:-15842590 Msa1142020:CDS
TTGTGTATATGAGTTTAATT+TGG 0.359877 7_4:-15843173 Msa1142020:five_prime_UTR
CAGCATCACCAATCAGCCTT+TGG 0.360159 7_4:+15842484 None:intergenic
GTCGATGATGTTGTCCTTGT+TGG 0.366819 7_4:-15841170 Msa1142020:CDS
TAAAGTGAAGCAGCTATTAC+AGG 0.371577 7_4:-15841129 Msa1142020:CDS
TGAAGGTTGATTATCTATAA+TGG 0.377928 7_4:+15840875 None:intergenic
CTGCCTGTGAGAGGGCAAAA+AGG 0.378093 7_4:-15841402 Msa1142020:CDS
GTAATCACTACATTCTTAAC+AGG 0.380808 7_4:+15841790 None:intergenic
AGTTGAAGCAAGAAATGCTT+TGG 0.381737 7_4:-15840565 Msa1142020:CDS
TTACCAAATACAGTGTTGAT+TGG 0.383287 7_4:+15842438 None:intergenic
ACATAAATAAAATTCCAAAT+AGG 0.384073 7_4:+15843232 None:intergenic
CTCTGATGGGGAAAGTGATT+CGG 0.385110 7_4:-15840328 Msa1142020:CDS
TGCTTATGGTGCAGCTGTCC+AGG 0.386356 7_4:-15841054 Msa1142020:CDS
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_4:+15841068 None:intergenic
AGGGACAATTTCATGTTCTT+GGG 0.401170 7_4:-15843392 Msa1142020:five_prime_UTR
AAGAACAAAGAGGATATTAG+TGG 0.402789 7_4:-15841454 Msa1142020:CDS
ACATCCCGCAGTACAAAGTT+TGG 0.403894 7_4:+15840999 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_4:+15841732 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 7_4:+15842439 None:intergenic
AGCATCACCAATCAGCCTTT+GGG 0.410141 7_4:+15842485 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_4:-15841673 Msa1142020:CDS
ACTAATTCCCAAAGGCTGAT+TGG 0.414254 7_4:-15842492 Msa1142020:CDS
ATGTTCTTGGGTGATAGAAA+TGG 0.421030 7_4:-15843380 Msa1142020:five_prime_UTR
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_4:-15841727 Msa1142020:CDS
AGTTGAAATTAAGGTTTATG+AGG 0.430803 7_4:-15840853 Msa1142020:CDS
GCACCGGAAATGACCTTAAA+GGG 0.431309 7_4:+15841934 None:intergenic
TACTTTGCTATAGATGCTAA+TGG 0.433656 7_4:-15840741 Msa1142020:CDS
TTTGAAGTCAAGGCCACTGC+TGG 0.434747 7_4:-15841547 Msa1142020:CDS
GATGTTACCCCTTTGTCACT+TGG 0.438428 7_4:-15840981 Msa1142020:CDS
AGAGATTGAGAGAATGATCC+AGG 0.439899 7_4:-15840631 Msa1142020:CDS
GGAAGATACCTCTGTGTTTG+TGG 0.456798 7_4:-15840412 Msa1142020:CDS
ATGAAAATGGAAGATTATCA+AGG 0.459072 7_4:-15840656 Msa1142020:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462009 7_4:-15841610 Msa1142020:CDS
TCACTTGGTATCTATACAAA+AGG 0.467271 7_4:-15840966 Msa1142020:CDS
ATCAACAAAGTTTACTCTGA+TGG 0.467555 7_4:-15840342 Msa1142020:CDS
TCAACAAAGTTTACTCTGAT+GGG 0.469241 7_4:-15840341 Msa1142020:CDS
ATGTAGTTCACAAGAATTGT+CGG 0.473999 7_4:+15841901 None:intergenic
AATGGTACAGAAGTATTACT+AGG 0.478857 7_4:+15840921 None:intergenic
GACCTAGATGCTATATATCA+AGG 0.488303 7_4:-15841349 Msa1142020:intron
GAAATTATTCACAATGATCA+AGG 0.492859 7_4:-15842546 Msa1142020:CDS
CCAGGAAGCTGACAATTTCA+AGG 0.494121 7_4:-15840613 Msa1142020:CDS
TGTGAATCATTGAAATAAGC+AGG 0.496737 7_4:+15841763 None:intergenic
TAAACCTTAATTTCAACTGA+AGG 0.498749 7_4:+15840858 None:intergenic
TGTTCCAAACTTTGTACTGC+GGG 0.500098 7_4:-15841003 Msa1142020:CDS
TTTATGTAAACTGGTTAACC+TGG 0.502175 7_4:-15843216 Msa1142020:five_prime_UTR
GTTGAAATTAAGGTTTATGA+GGG 0.502673 7_4:-15840852 Msa1142020:CDS
TATAGATACCAAGTGACAAA+GGG 0.503607 7_4:+15840973 None:intergenic
CTCGTGTGTTGGAGTATGGC+AGG 0.508579 7_4:-15842586 Msa1142020:CDS
TAACATCGTGTCTTCTTGAA+TGG 0.509005 7_4:+15840903 None:intergenic
AACAATTAACATACTAACAT+CGG 0.517371 7_4:+15842963 None:intergenic
GGCACGACTTACTCGTGTGT+TGG 0.523542 7_4:-15842597 Msa1142020:CDS
AATACTAGTCACATTGAAGA+AGG 0.525318 7_4:-15842922 Msa1142020:five_prime_UTR
TTCATTCACTTGAATGACAA+TGG 0.526178 7_4:-15842658 Msa1142020:exon
GGAAGGCCACGGGGAGCAAG+AGG 0.526733 7_4:+15840774 None:intergenic
TGTGTTTGTGGACTCTCTGA+AGG 0.527540 7_4:-15840400 Msa1142020:CDS
GAATACTTCTTGTACTCACT+CGG 0.531618 7_4:-15843071 Msa1142020:five_prime_UTR
GGGTGATAGAAATGGGTGGC+AGG 0.534992 7_4:-15843372 Msa1142020:five_prime_UTR
GATGATGTTGTCCTTGTTGG+TGG 0.537032 7_4:-15841167 Msa1142020:CDS
ATGGGTGGCAGGAGAGCAGA+TGG 0.540506 7_4:-15843361 Msa1142020:five_prime_UTR
AAATCAGGTCTTTGAAGTCA+AGG 0.541133 7_4:-15841557 Msa1142020:CDS
TGTCGGTTTGTCATTAGCAC+CGG 0.546119 7_4:+15841918 None:intergenic
ACTAGCTATCACATTGAAGA+AGG 0.550325 7_4:-15842873 Msa1142020:five_prime_UTR
CAAAGTATATTGTGAAAGGA+AGG 0.551587 7_4:+15840757 None:intergenic
GACAATTCTTGTGAACTACA+TGG 0.554410 7_4:-15841899 Msa1142020:CDS
ATAGCAAAGTATATTGTGAA+AGG 0.562710 7_4:+15840753 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_4:-15841739 Msa1142020:CDS
TGTTCTTGGGTGATAGAAAT+GGG 0.566795 7_4:-15843379 Msa1142020:five_prime_UTR
GACACTTTCATACGACATTG+AGG 0.567187 7_4:-15841380 Msa1142020:CDS
TACCTTGATATATAGCATCT+AGG 0.567285 7_4:+15841347 None:intergenic
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_4:+15841676 None:intergenic
CTTCAATGTGATAGCTAGTG+TGG 0.567956 7_4:+15842877 None:intergenic
GCAAGTGAGAACAACTTGCT+TGG 0.568418 7_4:-15840816 Msa1142020:CDS
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_4:-15841999 Msa1142020:CDS
GTTGCGATCGGAATTGACCT+TGG 0.571381 7_4:-15842618 Msa1142020:CDS
CAGGCTGCTTTGTTGAGTGA+AGG 0.571905 7_4:-15841035 Msa1142020:CDS
CAATCTCTCGCATCTGTGAG+AGG 0.572867 7_4:+15841833 None:intergenic
GGCAGTTCTCAACCTCCTCA+AGG 0.573614 7_4:+15841420 None:intergenic
GAGAGCAGATGGATGAAATG+AGG 0.579615 7_4:-15843350 Msa1142020:five_prime_UTR
AAATATGAGGGAGTTGCGAT+CGG 0.580136 7_4:-15842630 Msa1142020:CDS
TATTGTATCATATTATATTG+GGG 0.584556 7_4:-15843263 Msa1142020:five_prime_UTR
TATTGTGAAAGGAAGGCCAC+GGG 0.584742 7_4:+15840764 None:intergenic
GTATAGATACCAAGTGACAA+AGG 0.585134 7_4:+15840972 None:intergenic
TGAAAATGGAAGATTATCAA+GGG 0.589866 7_4:-15840655 Msa1142020:CDS
TCTTGTGAACTACATGGGTG+AGG 0.591771 7_4:-15841893 Msa1142020:CDS
TTATGTAAACTGGTTAACCT+GGG 0.591858 7_4:-15843215 Msa1142020:five_prime_UTR
TTGCTTTCACTAATTCCCAA+AGG 0.594534 7_4:-15842500 Msa1142020:CDS
AAGATGAGTAGATTAGATCA+TGG 0.595453 7_4:+15843096 None:intergenic
CATTGAAGAAGGAAAAGTCA+TGG 0.596249 7_4:-15842862 Msa1142020:five_prime_UTR
TATAGCATCTAGGTCAATTG+TGG 0.597011 7_4:+15841357 None:intergenic
GGTTGAGAACTGCCTGTGAG+AGG 0.597343 7_4:-15841411 Msa1142020:CDS
TAGGTGAGTGTCTCCAGCAG+TGG 0.598292 7_4:+15841534 None:intergenic
GAAAAGAAGTACAACACTGA+AGG 0.598883 7_4:-15843428 Msa1142020:five_prime_UTR
GATAATCAACGAACCGACTG+CGG 0.599523 7_4:-15841689 Msa1142020:CDS
GTTGAGAACTGCCTGTGAGA+GGG 0.603407 7_4:-15841410 Msa1142020:CDS
CTTCACTCAACAAAGCAGCC+TGG 0.604632 7_4:+15841036 None:intergenic
TATCGAAGTCTTCACCGCCT+AGG 0.607358 7_4:+15841515 None:intergenic
TATATTAAACGTCTCTGCAG+TGG 0.608686 7_4:-15840718 Msa1142020:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_4:+15841599 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 7_4:-15841477 Msa1142020:CDS
ATATTGTGAAAGGAAGGCCA+CGG 0.619206 7_4:+15840763 None:intergenic
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_4:+15841963 None:intergenic
TGAAGACTTCGATAACAGAA+TGG 0.624619 7_4:-15841506 Msa1142020:CDS
TTAGTGAAAGCAACACAAGA+AGG 0.625764 7_4:+15842510 None:intergenic
ATGGTACAGAAGTATTACTA+GGG 0.625887 7_4:+15840922 None:intergenic
CAACAAAGTTTACTCTGATG+GGG 0.627281 7_4:-15840340 Msa1142020:CDS
ACAATTCTTGTGAACTACAT+GGG 0.629634 7_4:-15841898 Msa1142020:CDS
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_4:-15841957 Msa1142020:CDS
AGAACAAAGAGGATATTAGT+GGG 0.633089 7_4:-15841453 Msa1142020:CDS
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_4:+15841069 None:intergenic
CATATACCAAATTAATACCC+AGG 0.637347 7_4:+15843198 None:intergenic
CTGAAGGCATAGAAGAAGTG+AGG 0.637383 7_4:-15843412 Msa1142020:five_prime_UTR
CAAGAGCATTAACCCTGATG+AGG 0.639574 7_4:-15841081 Msa1142020:CDS
AAAAGGTGATATTATGAGTG+TGG 0.640782 7_4:-15840949 Msa1142020:CDS
AAAGTTCCTCTTGCTCCCCG+TGG 0.642810 7_4:-15840780 Msa1142020:CDS
ACTGCTGGAGACACTCACCT+AGG 0.643459 7_4:-15841532 Msa1142020:CDS
AATGGTGAATCACTTTGTGA+AGG 0.643840 7_4:-15841488 Msa1142020:CDS
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 7_4:-15841464 Msa1142020:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 7_4:+15841156 None:intergenic
CACACGAGTAAGTCGTGCCA+AGG 0.653849 7_4:+15842601 None:intergenic
ATGTTCCAAACTTTGTACTG+CGG 0.654220 7_4:-15841004 Msa1142020:CDS
GCAGGAGCAGAACGATCGTG+TGG 0.659349 7_4:-15842568 Msa1142020:CDS
AATCAACGAACCGACTGCGG+CGG 0.664314 7_4:-15841686 Msa1142020:CDS
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_4:-15841435 Msa1142020:CDS
TGAAGGCATAGAAGAAGTGA+GGG 0.669027 7_4:-15843411 Msa1142020:five_prime_UTR
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_4:-15841432 Msa1142020:CDS
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_4:-15841711 Msa1142020:CDS
ATAGATACCAAGTGACAAAG+GGG 0.717788 7_4:+15840974 None:intergenic
ACAGATGCGAGAGATTGCAG+AGG 0.728184 7_4:-15841827 Msa1142020:CDS
TCTGCAGTGGAAGAAACCAG+TGG 0.733951 7_4:-15840705 Msa1142020:CDS
GCTGGAGACACTCACCTAGG+CGG 0.737514 7_4:-15841529 Msa1142020:CDS
CAGAGAGTCCACAAACACAG+AGG 0.754320 7_4:+15840404 None:intergenic
ATTGTGAAAGGAAGGCCACG+GGG 0.774146 7_4:+15840765 None:intergenic
TCTTGGGTGATAGAAATGGG+TGG 0.793220 7_4:-15843376 Msa1142020:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTGTATCATATTATAT+TGG - chr7_4:15840508-15840527 Msa1142020:intron 10.0%
!! ATATTGTATCATATTATATT+GGG - chr7_4:15840509-15840528 Msa1142020:intron 10.0%
!! TATTGTATCATATTATATTG+GGG - chr7_4:15840510-15840529 Msa1142020:intron 15.0%
!! ACATAAATAAAATTCCAAAT+AGG + chr7_4:15840544-15840563 None:intergenic 15.0%
!!! TTACTTTCTAAAAACATTTT+TGG - chr7_4:15841483-15841502 Msa1142020:CDS 15.0%
!!! ATTTTTGGAAGTTTTAAAAA+TGG + chr7_4:15841629-15841648 None:intergenic 15.0%
!! TATTCTTACAATAAAAAATC+AGG - chr7_4:15842201-15842220 Msa1142020:intron 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_4:15843104-15843123 Msa1142020:five_prime_UTR 15.0%
!!! GGAATTTTATTTATGTAAAC+TGG - chr7_4:15840548-15840567 Msa1142020:CDS 20.0%
!! TTGTGTATATGAGTTTAATT+TGG - chr7_4:15840600-15840619 Msa1142020:CDS 20.0%
!! AACAATTAACATACTAACAT+CGG + chr7_4:15840813-15840832 None:intergenic 20.0%
!!! TTTAAATTGGCTTCAAAATT+TGG + chr7_4:15841078-15841097 None:intergenic 20.0%
!! TTTGTAGAGAAGATTTAAAT+TGG + chr7_4:15841091-15841110 None:intergenic 20.0%
!!! TCATTTTAAATTGCTAACAT+AGG - chr7_4:15841509-15841528 Msa1142020:CDS 20.0%
!!! TGCAATATATTTGACATTTT+TGG + chr7_4:15841644-15841663 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG - chr7_4:15841723-15841742 Msa1142020:CDS 20.0%
!!! ATGTTTGATGATCTAGTTTT+TGG - chr7_4:15840630-15840649 Msa1142020:CDS 25.0%
!!! TGTATAGTAGTATTTTGGAA+AGG + chr7_4:15841036-15841055 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG + chr7_4:15841041-15841060 None:intergenic 25.0%
! ACAATGGCAAAAAAATATGA+GGG - chr7_4:15841131-15841150 Msa1142020:CDS 25.0%
! GAAATTATTCACAATGATCA+AGG - chr7_4:15841227-15841246 Msa1142020:intron 25.0%
! AACTAAAAATTAAACAGTGC+TGG + chr7_4:15841379-15841398 None:intergenic 25.0%
!! TATCATAGATCACCATTTTA+GGG - chr7_4:15841455-15841474 Msa1142020:CDS 25.0%
! TTGCATCTGCAAAAAATTAA+GGG + chr7_4:15841760-15841779 None:intergenic 25.0%
! TTTGCATCTGCAAAAAATTA+AGG + chr7_4:15841761-15841780 None:intergenic 25.0%
!! AACATTTTTATCTTTGACCT+TGG - chr7_4:15842157-15842176 Msa1142020:intron 25.0%
!!! TATTACAGGAGTTTTTCAAA+GGG - chr7_4:15842658-15842677 Msa1142020:exon 25.0%
!! TGAAGGTTGATTATCTATAA+TGG + chr7_4:15842901-15842920 None:intergenic 25.0%
! TAAACCTTAATTTCAACTGA+AGG + chr7_4:15842918-15842937 None:intergenic 25.0%
! AGTTGAAATTAAGGTTTATG+AGG - chr7_4:15842920-15842939 Msa1142020:five_prime_UTR 25.0%
! GTTGAAATTAAGGTTTATGA+GGG - chr7_4:15842921-15842940 Msa1142020:five_prime_UTR 25.0%
! ATAGCAAAGTATATTGTGAA+AGG + chr7_4:15843023-15843042 None:intergenic 25.0%
!!! AATTTCATTTTTATTGCCAC+TGG + chr7_4:15843087-15843106 None:intergenic 25.0%
! ATGAAAATGGAAGATTATCA+AGG - chr7_4:15843117-15843136 Msa1142020:five_prime_UTR 25.0%
! TGAAAATGGAAGATTATCAA+GGG - chr7_4:15843118-15843137 Msa1142020:five_prime_UTR 25.0%
! ATCAATTCTGCAATTATCAA+GGG - chr7_4:15843311-15843330 Msa1142020:five_prime_UTR 25.0%
AAATGAGGCGTAAAGTAAAA+TGG - chr7_4:15840438-15840457 Msa1142020:intron 30.0%
TTTATGTAAACTGGTTAACC+TGG - chr7_4:15840557-15840576 Msa1142020:CDS 30.0%
TTATGTAAACTGGTTAACCT+GGG - chr7_4:15840558-15840577 Msa1142020:CDS 30.0%
CATATACCAAATTAATACCC+AGG + chr7_4:15840578-15840597 None:intergenic 30.0%
!!! GATCTAGTTTTTGGCTTAAA+TGG - chr7_4:15840639-15840658 Msa1142020:CDS 30.0%
AAGATGAGTAGATTAGATCA+TGG + chr7_4:15840680-15840699 None:intergenic 30.0%
AATACTAGTCACATTGAAGA+AGG - chr7_4:15840851-15840870 Msa1142020:CDS 30.0%
TTCATTCACTTGAATGACAA+TGG - chr7_4:15841115-15841134 Msa1142020:CDS 30.0%
GACAATGGCAAAAAAATATG+AGG - chr7_4:15841130-15841149 Msa1142020:CDS 30.0%
!! TACCAAATACAGTGTTGATT+GGG + chr7_4:15841337-15841356 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG + chr7_4:15841338-15841357 None:intergenic 30.0%
! GTATCATAGATCACCATTTT+AGG - chr7_4:15841454-15841473 Msa1142020:CDS 30.0%
AAAGTAAACACACCCTAAAA+TGG + chr7_4:15841470-15841489 None:intergenic 30.0%
TGTGCTAGATAAAAGATAGA+AGG - chr7_4:15841556-15841575 Msa1142020:CDS 30.0%
!!! AATTTTTTGCAGATGCAAAG+AGG - chr7_4:15841762-15841781 Msa1142020:CDS 30.0%
ATGTAGTTCACAAGAATTGT+CGG + chr7_4:15841875-15841894 None:intergenic 30.0%
ACAATTCTTGTGAACTACAT+GGG - chr7_4:15841875-15841894 Msa1142020:CDS 30.0%
GTAATCACTACATTCTTAAC+AGG + chr7_4:15841986-15842005 None:intergenic 30.0%
TGTGAATCATTGAAATAAGC+AGG + chr7_4:15842013-15842032 None:intergenic 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr7_4:15842160-15842179 Msa1142020:intron 30.0%
AAGAACAAAGAGGATATTAG+TGG - chr7_4:15842319-15842338 Msa1142020:intron 30.0%
AGAACAAAGAGGATATTAGT+GGG - chr7_4:15842320-15842339 Msa1142020:intron 30.0%
TACCTTGATATATAGCATCT+AGG + chr7_4:15842429-15842448 None:intergenic 30.0%
! ACTTTTGTTCATCAATCACT+CGG - chr7_4:15842452-15842471 Msa1142020:CDS 30.0%
CATATTCAATTGCTCAAACT+TGG + chr7_4:15842479-15842498 None:intergenic 30.0%
CAAGTTTGAGCAATTGAATA+TGG - chr7_4:15842477-15842496 Msa1142020:CDS 30.0%
! TGTACATACACTTTTCAAAG+AGG + chr7_4:15842504-15842523 None:intergenic 30.0%
!! CTATTACAGGAGTTTTTCAA+AGG - chr7_4:15842657-15842676 Msa1142020:exon 30.0%
TATAGATACCAAGTGACAAA+GGG + chr7_4:15842803-15842822 None:intergenic 30.0%
TCACTTGGTATCTATACAAA+AGG - chr7_4:15842807-15842826 Msa1142020:five_prime_UTR 30.0%
AAAAGGTGATATTATGAGTG+TGG - chr7_4:15842824-15842843 Msa1142020:five_prime_UTR 30.0%
!! ATGGTACAGAAGTATTACTA+GGG + chr7_4:15842854-15842873 None:intergenic 30.0%
!! AATGGTACAGAAGTATTACT+AGG + chr7_4:15842855-15842874 None:intergenic 30.0%
TCAACCTTCAGTTGAAATTA+AGG - chr7_4:15842911-15842930 Msa1142020:five_prime_UTR 30.0%
CAAAGTATATTGTGAAAGGA+AGG + chr7_4:15843019-15843038 None:intergenic 30.0%
! TACTTTGCTATAGATGCTAA+TGG - chr7_4:15843032-15843051 Msa1142020:five_prime_UTR 30.0%
GATCAATTCTGCAATTATCA+AGG - chr7_4:15843310-15843329 Msa1142020:five_prime_UTR 30.0%
TTTGATTAATGACAACCTGT+AGG - chr7_4:15843340-15843359 Msa1142020:five_prime_UTR 30.0%
ATCAACAAAGTTTACTCTGA+TGG - chr7_4:15843431-15843450 Msa1142020:five_prime_UTR 30.0%
TCAACAAAGTTTACTCTGAT+GGG - chr7_4:15843432-15843451 Msa1142020:five_prime_UTR 30.0%
! GAAAAGAAGTACAACACTGA+AGG - chr7_4:15840345-15840364 Msa1142020:CDS 35.0%
AGGGACAATTTCATGTTCTT+GGG - chr7_4:15840381-15840400 Msa1142020:CDS 35.0%
ATGTTCTTGGGTGATAGAAA+TGG - chr7_4:15840393-15840412 Msa1142020:CDS 35.0%
TGTTCTTGGGTGATAGAAAT+GGG - chr7_4:15840394-15840413 Msa1142020:CDS 35.0%
GGTTAACCTGGGTATTAATT+TGG - chr7_4:15840569-15840588 Msa1142020:CDS 35.0%
GAATACTTCTTGTACTCACT+CGG - chr7_4:15840702-15840721 Msa1142020:CDS 35.0%
ACTAGCTATCACATTGAAGA+AGG - chr7_4:15840900-15840919 Msa1142020:CDS 35.0%
CATTGAAGAAGGAAAAGTCA+TGG - chr7_4:15840911-15840930 Msa1142020:CDS 35.0%
TTAGTGAAAGCAACACAAGA+AGG + chr7_4:15841266-15841285 None:intergenic 35.0%
TTGCTTTCACTAATTCCCAA+AGG - chr7_4:15841273-15841292 Msa1142020:intron 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG + chr7_4:15841315-15841334 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG - chr7_4:15841332-15841351 Msa1142020:intron 35.0%
ATGCAAAGAGGTTAATTGGA+AGG - chr7_4:15841774-15841793 Msa1142020:CDS 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr7_4:15841813-15841832 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr7_4:15841816-15841835 Msa1142020:CDS 35.0%
GACAATTCTTGTGAACTACA+TGG - chr7_4:15841874-15841893 Msa1142020:CDS 35.0%
AATATCACCTGCATCTTTAG+TGG + chr7_4:15842044-15842063 None:intergenic 35.0%
!! AAATCAGGTCTTTGAAGTCA+AGG - chr7_4:15842216-15842235 Msa1142020:intron 35.0%
TGAAGACTTCGATAACAGAA+TGG - chr7_4:15842267-15842286 Msa1142020:intron 35.0%
AATGGTGAATCACTTTGTGA+AGG - chr7_4:15842285-15842304 Msa1142020:intron 35.0%
TATAGCATCTAGGTCAATTG+TGG + chr7_4:15842419-15842438 None:intergenic 35.0%
GACCTAGATGCTATATATCA+AGG - chr7_4:15842424-15842443 Msa1142020:intron 35.0%
! CTTTTGTTCATCAATCACTC+GGG - chr7_4:15842453-15842472 Msa1142020:CDS 35.0%
! CTGTCTTGTTGATGCTAAAA+TGG - chr7_4:15842569-15842588 Msa1142020:CDS 35.0%
TGTAATAGCTGCTTCACTTT+AGG + chr7_4:15842645-15842664 None:intergenic 35.0%
TAAAGTGAAGCAGCTATTAC+AGG - chr7_4:15842644-15842663 Msa1142020:CDS 35.0%
ATGTTCCAAACTTTGTACTG+CGG - chr7_4:15842769-15842788 Msa1142020:five_prime_UTR 35.0%
ATAGATACCAAGTGACAAAG+GGG + chr7_4:15842802-15842821 None:intergenic 35.0%
GTATAGATACCAAGTGACAA+AGG + chr7_4:15842804-15842823 None:intergenic 35.0%
TAACATCGTGTCTTCTTGAA+TGG + chr7_4:15842873-15842892 None:intergenic 35.0%
TATATTAAACGTCTCTGCAG+TGG - chr7_4:15843055-15843074 Msa1142020:five_prime_UTR 35.0%
AGTTGAAGCAAGAAATGCTT+TGG - chr7_4:15843208-15843227 Msa1142020:five_prime_UTR 35.0%
CAACAAAGTTTACTCTGATG+GGG - chr7_4:15843433-15843452 Msa1142020:five_prime_UTR 35.0%
! TGAAGGCATAGAAGAAGTGA+GGG - chr7_4:15840362-15840381 Msa1142020:CDS 40.0%
GAGGGACAATTTCATGTTCT+TGG - chr7_4:15840380-15840399 Msa1142020:CDS 40.0%
CTTCAATGTGATAGCTAGTG+TGG + chr7_4:15840899-15840918 None:intergenic 40.0%
AAATATGAGGGAGTTGCGAT+CGG - chr7_4:15841143-15841162 Msa1142020:CDS 40.0%
ACTAATTCCCAAAGGCTGAT+TGG - chr7_4:15841281-15841300 Msa1142020:intron 40.0%
GCAGATGCAAAGAGGTTAAT+TGG - chr7_4:15841770-15841789 Msa1142020:CDS 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr7_4:15841955-15841974 Msa1142020:CDS 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr7_4:15842046-15842065 Msa1142020:intron 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr7_4:15842062-15842081 Msa1142020:intron 40.0%
!! CACAGTTAGCTCTCTTTTGA+AGG + chr7_4:15842126-15842145 None:intergenic 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG - chr7_4:15842296-15842315 Msa1142020:intron 40.0%
GTTCAAGAGGAAGAACAAAG+AGG - chr7_4:15842309-15842328 Msa1142020:intron 40.0%
GACACTTTCATACGACATTG+AGG - chr7_4:15842393-15842412 Msa1142020:intron 40.0%
!! ACAGGAGTTTTTCAAAGGGA+AGG - chr7_4:15842662-15842681 Msa1142020:exon 40.0%
TGTTCCAAACTTTGTACTGC+GGG - chr7_4:15842770-15842789 Msa1142020:five_prime_UTR 40.0%
ATATTGTGAAAGGAAGGCCA+CGG + chr7_4:15843013-15843032 None:intergenic 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_4:15843142-15843161 Msa1142020:five_prime_UTR 40.0%
TGATCTTCACTCTGTCTACA+GGG + chr7_4:15843295-15843314 None:intergenic 40.0%
TTGATCTTCACTCTGTCTAC+AGG + chr7_4:15843296-15843315 None:intergenic 40.0%
! CTGAAGGCATAGAAGAAGTG+AGG - chr7_4:15840361-15840380 Msa1142020:CDS 45.0%
TCTTGGGTGATAGAAATGGG+TGG - chr7_4:15840397-15840416 Msa1142020:CDS 45.0%
GAGAGCAGATGGATGAAATG+AGG - chr7_4:15840423-15840442 Msa1142020:intron 45.0%
TTGGGGAGTCTTCTCCTATT+TGG - chr7_4:15840527-15840546 Msa1142020:intron 45.0%
CTTACTCGTGTGTTGGAGTA+TGG - chr7_4:15841183-15841202 Msa1142020:CDS 45.0%
AGCATCACCAATCAGCCTTT+GGG + chr7_4:15841291-15841310 None:intergenic 45.0%
! TGGTGATGCTGCCAAAAATC+AGG - chr7_4:15841301-15841320 Msa1142020:intron 45.0%
TCTACTGTTGTGGCCCTTTA+AGG - chr7_4:15841826-15841845 Msa1142020:CDS 45.0%
!! TGGCCCTTTAAGGTCATTTC+CGG - chr7_4:15841836-15841855 Msa1142020:CDS 45.0%
GCACCGGAAATGACCTTAAA+GGG + chr7_4:15841842-15841861 None:intergenic 45.0%
! AGCACCGGAAATGACCTTAA+AGG + chr7_4:15841843-15841862 None:intergenic 45.0%
!! TGTCGGTTTGTCATTAGCAC+CGG + chr7_4:15841858-15841877 None:intergenic 45.0%
TCTTGTGAACTACATGGGTG+AGG - chr7_4:15841880-15841899 Msa1142020:CDS 45.0%
GATAATCAACGAACCGACTG+CGG - chr7_4:15842084-15842103 Msa1142020:intron 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr7_4:15842163-15842182 Msa1142020:intron 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr7_4:15842348-15842367 None:intergenic 45.0%
GTCGATGATGTTGTCCTTGT+TGG - chr7_4:15842603-15842622 Msa1142020:CDS 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr7_4:15842606-15842625 Msa1142020:CDS 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG - chr7_4:15842616-15842635 Msa1142020:CDS 45.0%
TCCTAGAAGAACCACCAACA+AGG + chr7_4:15842620-15842639 None:intergenic 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_4:15842692-15842711 Msa1142020:five_prime_UTR 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_4:15842707-15842726 None:intergenic 45.0%
ACATCCCGCAGTACAAAGTT+TGG + chr7_4:15842777-15842796 None:intergenic 45.0%
GATGTTACCCCTTTGTCACT+TGG - chr7_4:15842792-15842811 Msa1142020:five_prime_UTR 45.0%
! GCAAGTGAGAACAACTTGCT+TGG - chr7_4:15842957-15842976 Msa1142020:five_prime_UTR 45.0%
TATTGTGAAAGGAAGGCCAC+GGG + chr7_4:15843012-15843031 None:intergenic 45.0%
CCTTGAAATTGTCAGCTTCC+TGG + chr7_4:15843163-15843182 None:intergenic 45.0%
CCAGGAAGCTGACAATTTCA+AGG - chr7_4:15843160-15843179 Msa1142020:five_prime_UTR 45.0%
GATCTTCACTCTGTCTACAG+GGG + chr7_4:15843294-15843313 None:intergenic 45.0%
!! ACACAGAGGTATCTTCCTAC+AGG + chr7_4:15843358-15843377 None:intergenic 45.0%
GGAAGATACCTCTGTGTTTG+TGG - chr7_4:15843361-15843380 Msa1142020:five_prime_UTR 45.0%
TGTGTTTGTGGACTCTCTGA+AGG - chr7_4:15843373-15843392 Msa1142020:five_prime_UTR 45.0%
CTCTGATGGGGAAAGTGATT+CGG - chr7_4:15843445-15843464 Msa1142020:five_prime_UTR 45.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_4:15841155-15841174 Msa1142020:CDS 50.0%
CAGCATCACCAATCAGCCTT+TGG + chr7_4:15841292-15841311 None:intergenic 50.0%
CAATCTCTCGCATCTGTGAG+AGG + chr7_4:15841943-15841962 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG - chr7_4:15841946-15841965 Msa1142020:CDS 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr7_4:15842034-15842053 Msa1142020:intron 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr7_4:15842177-15842196 None:intergenic 50.0%
! TTTGAAGTCAAGGCCACTGC+TGG - chr7_4:15842226-15842245 Msa1142020:intron 50.0%
TATCGAAGTCTTCACCGCCT+AGG + chr7_4:15842261-15842280 None:intergenic 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr7_4:15842349-15842368 None:intergenic 50.0%
GTTGAGAACTGCCTGTGAGA+GGG - chr7_4:15842363-15842382 Msa1142020:intron 50.0%
! TGTCCTTTTTGCCCTCTCAC+AGG + chr7_4:15842377-15842396 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_4:15842708-15842727 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_4:15842705-15842724 Msa1142020:five_prime_UTR 50.0%
CTTCACTCAACAAAGCAGCC+TGG + chr7_4:15842740-15842759 None:intergenic 50.0%
! CAGGCTGCTTTGTTGAGTGA+AGG - chr7_4:15842738-15842757 Msa1142020:five_prime_UTR 50.0%
ATTGTGAAAGGAAGGCCACG+GGG + chr7_4:15843011-15843030 None:intergenic 50.0%
TCTGCAGTGGAAGAAACCAG+TGG - chr7_4:15843068-15843087 Msa1142020:five_prime_UTR 50.0%
CAGAGAGTCCACAAACACAG+AGG + chr7_4:15843372-15843391 None:intergenic 50.0%
GGGTGATAGAAATGGGTGGC+AGG - chr7_4:15840401-15840420 Msa1142020:CDS 55.0%
CACACGAGTAAGTCGTGCCA+AGG + chr7_4:15841175-15841194 None:intergenic 55.0%
GGCACGACTTACTCGTGTGT+TGG - chr7_4:15841176-15841195 Msa1142020:CDS 55.0%
CTCGTGTGTTGGAGTATGGC+AGG - chr7_4:15841187-15841206 Msa1142020:CDS 55.0%
AATCAACGAACCGACTGCGG+CGG - chr7_4:15842087-15842106 Msa1142020:intron 55.0%
TAGGTGAGTGTCTCCAGCAG+TGG + chr7_4:15842242-15842261 None:intergenic 55.0%
ACTGCTGGAGACACTCACCT+AGG - chr7_4:15842241-15842260 Msa1142020:intron 55.0%
GTGGGAACCCAAAAGCCTTG+AGG - chr7_4:15842338-15842357 Msa1142020:intron 55.0%
GGAACCCAAAAGCCTTGAGG+AGG - chr7_4:15842341-15842360 Msa1142020:intron 55.0%
GGCAGTTCTCAACCTCCTCA+AGG + chr7_4:15842356-15842375 None:intergenic 55.0%
GGTTGAGAACTGCCTGTGAG+AGG - chr7_4:15842362-15842381 Msa1142020:intron 55.0%
CTGCCTGTGAGAGGGCAAAA+AGG - chr7_4:15842371-15842390 Msa1142020:intron 55.0%
TGCTTATGGTGCAGCTGTCC+AGG - chr7_4:15842719-15842738 Msa1142020:five_prime_UTR 55.0%
AAAGTTCCTCTTGCTCCCCG+TGG - chr7_4:15842993-15843012 Msa1142020:five_prime_UTR 55.0%
ATGGGTGGCAGGAGAGCAGA+TGG - chr7_4:15840412-15840431 Msa1142020:CDS 60.0%
GCAGGAGCAGAACGATCGTG+TGG - chr7_4:15841205-15841224 Msa1142020:CDS 60.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr7_4:15842100-15842119 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr7_4:15842100-15842119 Msa1142020:intron 60.0%
GCTGGAGACACTCACCTAGG+CGG - chr7_4:15842244-15842263 Msa1142020:intron 60.0%
GGAAGGCCACGGGGAGCAAG+AGG + chr7_4:15843002-15843021 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 15840320 15843475 15840320 ID=Msa1142020;Name=Msa1142020
chr7_4 mRNA 15840320 15843475 15840320 ID=Msa1142020-mRNA-1;Parent=Msa1142020;Name=Msa1142020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=808|0.33|0.25|1|1|1|4|0|567
chr7_4 exon 15840320 15840433 15840320 ID=Msa1142020-mRNA-1:exon:3594;Parent=Msa1142020-mRNA-1
chr7_4 exon 15840548 15841239 15840548 ID=Msa1142020-mRNA-1:exon:3593;Parent=Msa1142020-mRNA-1
chr7_4 exon 15841350 15842021 15841350 ID=Msa1142020-mRNA-1:exon:3592;Parent=Msa1142020-mRNA-1
chr7_4 exon 15842442 15843475 15842442 ID=Msa1142020-mRNA-1:exon:3591;Parent=Msa1142020-mRNA-1
chr7_4 five_prime_UTR 15842668 15843475 15842668 ID=Msa1142020-mRNA-1:five_prime_utr;Parent=Msa1142020-mRNA-1
chr7_4 CDS 15842442 15842667 15842442 ID=Msa1142020-mRNA-1:cds;Parent=Msa1142020-mRNA-1
chr7_4 CDS 15841350 15842021 15841350 ID=Msa1142020-mRNA-1:cds;Parent=Msa1142020-mRNA-1
chr7_4 CDS 15840548 15841239 15840548 ID=Msa1142020-mRNA-1:cds;Parent=Msa1142020-mRNA-1
chr7_4 CDS 15840320 15840433 15840320 ID=Msa1142020-mRNA-1:cds;Parent=Msa1142020-mRNA-1
Gene Sequence

>Msa1142020

ATGACAATGGCAAAAAAATATGAGGGAGTTGCGATCGGAATTGACCTTGGCACGACTTACTCGTGTGTTGGAGTATGGCAGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACTAATTCCCAAAGGCTGATTGGTGATGCTGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATTTCCGGTGCTAATGACAAACCGACAATTCTTGTGAACTACATGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGTAGTGATTACTGTACCTGCTTATTTCAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAACTGTGTTGATAAGAGAAACATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATAAAAAATCAGGTCTTTGAAGTCAAGGCCACTGCTGGAGACACTCACCTAGGCGGTGAAGACTTCGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTTTCATACGACATTGAGGCCACAATTGACCTAGATGCTATATATCAAGAAACTGTTAATAGCTGTCTTGTTGATGCTAAAATGGACAAGAGTAGTGTCGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCTAAAGTGAAGCAGCTATTACAGGAGTTTTTCAAAGGGAAGGAATTATGCAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGCTTTGTTGAGTGAAGGCAGTAAGAATGTTCCAAACTTTGTACTGCGGGATGTTACCCCTTTGTCACTTGGTATCTATACAAAAGGTGATATTATGAGTGTGGTGATCCCTAGTAATACTTCTGTACCATTCAAGAAGACACGATGTTATCGTACCATTATAGATAATCAACCTTCAGTTGAAATTAAGGTTTATGAGGGTGAGAGAATTGTTGCAAGTGAGAACAACTTGCTTGGTTTGTTTGATCTCAAAGTTCCTCTTGCTCCCCGTGGCCTTCCTTTCACAATATACTTTGCTATAGATGCTAATGGTATATTAAACGTCTCTGCAGTGGAAGAAACCAGTGGCAATAAAAATGAAATTACAATAACTAATGAAAATGGAAGATTATCAAGGGAAGAGATTGAGAGAATGATCCAGGAAGCTGACAATTTCAAGGCTCAAGACATGAAGTTCAAAAAGAAAGTTGAAGCAAGAAATGCTTTGGATGATTATCTTTACAAAGAAGATACCTCTGTGTTTGTGGACTCTCTGAAGGAGCTTGAGAGCATCTTTGAATCTGCTATGAACAAGATCAACAAAGTTTACTCTGATGGGGAAAGTGATTCGGATTCTTAG

Protein sequence

>Msa1142020

MTMAKKYEGVAIGIDLGTTYSCVGVWQEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGANDKPTILVNYMGEEKHFVAEEISSVILSQMREIAEAFLESPVKNVVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNQVFEVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACERAKRTLSYDIEATIDLDAIYQETVNSCLVDAKMDKSSVDDVVLVGGSSRIPKVKQLLQEFFKGKELCKSINPDEAVAYGAAVQAALLSEGSKNVPNFVLRDVTPLSLGIYTKGDIMSVVIPSNTSVPFKKTRCYRTIIDNQPSVEIKVYEGERIVASENNLLGLFDLKVPLAPRGLPFTIYFAIDANGILNVSAVEETSGNKNEITITNENGRLSREEIERMIQEADNFKAQDMKFKKKVEARNALDDYLYKEDTSVFVDSLKELESIFESAMNKINKVYSDGESDSDS*