AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0995430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995430 MtrunA17_Chr7g0236971 53.597 278 116 2 16 281 125 401 4.14e-101 301
Msa0995430 MtrunA17_Chr7g0237011 53.597 278 116 2 16 281 222 498 5.62e-100 301
Msa0995430 MtrunA17_Chr7g0236961 53.597 278 116 2 16 281 222 498 5.93e-100 301
Msa0995430 MtrunA17_Chr7g0236991 53.597 278 116 2 16 281 277 553 2.34e-99 301
Msa0995430 MtrunA17_Chr7g0237001 53.597 278 116 2 16 281 277 553 2.53e-99 301
Msa0995430 MtrunA17_Chr7g0237041 53.597 278 116 2 16 281 277 553 2.53e-99 301
Msa0995430 MtrunA17_Chr7g0237081 53.597 278 116 2 16 281 277 553 2.53e-99 301
Msa0995430 MtrunA17_Chr7g0237051 53.597 278 116 2 16 281 277 553 2.53e-99 301
Msa0995430 MtrunA17_Chr4g0024691 53.957 278 115 2 16 281 285 561 6.95e-96 293
Msa0995430 MtrunA17_Chr6g0466031 53.462 260 109 1 34 281 1 260 1.05e-94 280
Msa0995430 MtrunA17_Chr3g0082691 53.543 254 106 1 40 281 300 553 1.20e-93 286
Msa0995430 MtrunA17_Chr6g0465851 53.257 261 110 1 33 281 258 518 4.83e-92 281
Msa0995430 MtrunA17_Chr6g0465441 54.231 260 107 2 34 281 294 553 7.41e-92 282
Msa0995430 MtrunA17_Chr6g0466051 53.257 261 110 1 33 281 293 553 1.70e-91 281
Msa0995430 MtrunA17_Chr6g0465911 53.257 261 110 1 33 281 293 553 2.04e-91 281
Msa0995430 MtrunA17_Chr3g0105071 53.906 256 102 2 40 281 304 557 2.36e-91 281
Msa0995430 MtrunA17_Chr5g0431651 53.125 256 104 2 40 281 299 552 5.78e-88 272
Msa0995430 MtrunA17_Chr6g0451711 50.579 259 116 2 35 281 299 557 6.35e-88 272
Msa0995430 MtrunA17_Chr5g0425371 50.360 278 125 3 16 281 277 553 2.37e-87 270
Msa0995430 MtrunA17_Chr5g0431571 53.086 243 102 1 49 279 305 547 3.59e-87 270
Msa0995430 MtrunA17_Chr7g0237021 68.605 172 54 0 110 281 1 172 6.41e-87 256
Msa0995430 MtrunA17_Chr7g0236941 68.605 172 54 0 110 281 1 172 6.41e-87 256
Msa0995430 MtrunA17_Chr6g0465941 63.953 172 62 0 110 281 1 172 4.81e-80 239
Msa0995430 MtrunA17_Chr6g0466121 63.953 172 62 0 110 281 1 172 4.81e-80 239
Msa0995430 MtrunA17_Chr6g0465991 63.953 172 62 0 110 281 1 172 4.81e-80 239
Msa0995430 MtrunA17_Chr6g0466091 63.953 172 62 0 110 281 1 172 4.81e-80 239
Msa0995430 MtrunA17_Chr7g0237061 50.593 253 90 3 41 281 8 237 9.93e-80 241
Msa0995430 MtrunA17_Chr6g0465881 63.372 172 63 0 110 281 1 172 3.04e-79 237
Msa0995430 MtrunA17_Chr5g0445501 62.209 172 65 0 110 281 1 172 8.46e-77 231
Msa0995430 MtrunA17_Chr4g0042111 45.817 251 124 2 43 281 312 562 7.86e-73 233
Msa0995430 MtrunA17_Chr7g0236921 63.291 158 54 1 128 281 1 158 6.74e-71 215
Msa0995430 MtrunA17_Chr7g0236931 60.390 154 58 1 128 281 1 151 2.46e-65 201
Msa0995430 MtrunA17_Chr8g0336181 34.231 260 149 6 41 281 300 556 6.81e-44 156
Msa0995430 MtrunA17_Chr2g0319041 34.630 257 148 6 43 281 303 557 1.05e-43 156
Msa0995430 MtrunA17_Chr2g0319051 32.806 253 154 5 43 281 264 514 7.90e-43 153
Msa0995430 MtrunA17_Chr2g0319071 36.598 194 119 4 88 279 296 487 9.52e-39 141
Msa0995430 MtrunA17_Chr2g0319081 33.594 256 140 8 43 281 185 427 1.16e-35 132
Msa0995430 MtrunA17_Chr3g0082711 50.000 116 41 1 166 281 1 99 2.49e-34 120
Msa0995430 MtrunA17_Chr4g0048921 30.043 233 145 5 63 279 339 569 2.08e-25 105
Msa0995430 MtrunA17_Chr7g0217361 26.882 279 185 4 16 278 32 307 1.28e-21 92.4
Msa0995430 MtrunA17_Chr4g0023911 23.868 243 173 2 49 279 337 579 8.25e-21 92.0
Msa0995430 MtrunA17_Chr2g0310401 24.125 257 182 3 35 279 175 430 9.56e-21 91.3
Msa0995430 MtrunA17_Chr4g0048911 25.207 242 161 5 49 273 318 556 1.99e-20 90.9
Msa0995430 MtrunA17_Chr2g0323151 24.336 226 157 3 49 261 238 462 4.74e-20 89.4
Msa0995430 MtrunA17_Chr3g0108941 25.514 243 163 7 49 275 273 513 2.28e-19 87.8
Msa0995430 MtrunA17_Chr6g0477121 26.339 224 145 6 49 254 190 411 1.06e-18 85.5
Msa0995430 MtrunA17_Chr2g0310331 24.125 257 182 3 35 279 329 584 2.65e-18 84.7
Msa0995430 MtrunA17_Chr6g0477111 25.431 232 157 6 49 264 247 478 9.62e-18 82.8
Msa0995430 MtrunA17_Chr3g0105691 25.110 227 154 5 49 259 305 531 1.60e-17 82.4
Msa0995430 MtrunA17_Chr3g0109031 25.764 229 150 6 44 254 267 493 1.85e-17 82.0
Msa0995430 MtrunA17_Chr3g0109011 27.184 206 130 6 67 254 265 468 2.16e-17 81.6
Msa0995430 MtrunA17_Chr3g0108981 27.184 206 130 6 67 254 266 469 2.19e-17 81.6
Msa0995430 MtrunA17_Chr3g0108961 27.184 206 130 6 67 254 266 469 2.19e-17 81.6
Msa0995430 MtrunA17_Chr3g0109001 25.893 224 146 6 49 254 273 494 2.32e-17 81.6
Msa0995430 MtrunA17_Chr3g0099031 25.926 243 162 7 49 275 272 512 2.94e-17 81.3
Msa0995430 MtrunA17_Chr8g0357231 22.481 258 186 3 35 279 1 257 1.12e-16 77.8
Msa0995430 MtrunA17_Chr3g0108971 25.359 209 140 5 67 259 265 473 1.48e-16 79.3
Msa0995430 MtrunA17_Chr3g0108991 25.359 209 140 5 67 259 290 498 1.56e-16 79.3
Msa0995430 MtrunA17_Chr3g0108951 25.359 209 140 5 67 259 290 498 1.56e-16 79.3
Msa0995430 MtrunA17_Chr3g0109021 25.328 229 151 6 44 254 267 493 1.66e-16 79.3
Msa0995430 MtrunA17_Chr2g0323131 23.348 227 159 5 49 261 322 547 2.09e-16 79.0
Msa0995430 MtrunA17_Chr2g0280581 24.603 252 153 9 49 272 276 518 1.00e-15 77.0
Msa0995430 MtrunA17_Chr8g0357411 22.745 255 183 3 38 279 334 587 1.85e-14 73.2
Msa0995430 MtrunA17_Chr4g0008631 34.940 83 52 2 200 281 1 82 8.29e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995430 AT5G23960.2 33.465 254 156 2 40 281 293 545 4.17e-43 154
Msa0995430 AT5G23960.1 33.077 260 151 3 40 281 293 547 1.20e-42 153
Msa0995430 AT1G70080.1 29.630 270 171 3 25 281 348 611 8.12e-37 138
Msa0995430 AT3G32030.1 28.163 245 163 2 50 281 360 604 9.63e-34 129
Msa0995430 AT5G48110.1 29.075 227 145 5 67 281 117 339 9.65e-34 125
Msa0995430 AT4G13300.1 29.825 228 147 3 67 281 327 554 3.08e-32 125
Msa0995430 AT3G29410.2 26.894 264 173 3 34 281 239 498 3.28e-32 124
Msa0995430 AT3G29410.1 26.894 264 173 3 34 281 344 603 5.26e-32 124
Msa0995430 AT4G13280.2 31.443 194 132 1 89 281 361 554 7.21e-32 124
Msa0995430 AT4G20210.1 28.182 220 152 2 62 281 387 600 8.22e-32 124
Msa0995430 AT3G14520.1 27.600 250 168 3 45 281 355 604 1.68e-31 123
Msa0995430 AT5G44630.1 28.926 242 160 2 50 279 314 555 1.77e-31 122
Msa0995430 AT4G20200.1 28.185 259 166 6 41 281 348 604 6.13e-31 121
Msa0995430 AT3G14490.1 31.020 245 155 4 50 281 358 601 1.56e-30 120
Msa0995430 AT1G31950.3 26.744 258 176 3 37 281 350 607 4.90e-30 119
Msa0995430 AT1G31950.1 26.744 258 176 3 37 281 349 606 5.02e-30 119
Msa0995430 AT1G61680.1 30.085 236 152 4 49 271 334 569 2.48e-29 117
Msa0995430 AT1G61680.2 30.085 236 152 4 49 271 327 562 3.31e-29 116
Msa0995430 AT3G14540.1 29.381 194 136 1 89 281 408 601 3.82e-28 113
Msa0995430 AT1G33750.1 26.230 244 168 2 50 281 360 603 7.82e-28 112
Msa0995430 AT1G48800.1 26.754 228 152 2 65 277 375 602 8.95e-28 112
Msa0995430 AT4G15870.1 26.437 261 165 3 35 281 351 598 1.15e-27 112
Msa0995430 AT2G23230.2 26.154 260 178 2 35 280 340 599 2.87e-27 111
Msa0995430 AT1G66020.1 27.237 257 171 3 41 281 342 598 5.68e-26 107
Msa0995430 AT3G29190.1 25.446 224 153 4 62 281 388 601 3.36e-25 105
Msa0995430 AT2G23230.1 25.769 260 174 3 35 280 340 594 5.62e-25 104
Msa0995430 AT4G20230.2 28.421 190 135 1 89 277 424 613 4.58e-24 102
Msa0995430 AT4G20230.1 28.421 190 135 1 89 277 412 601 4.95e-24 102
Msa0995430 AT3G29110.1 26.606 218 154 1 62 279 384 595 2.42e-22 97.1
Msa0995430 AT4G13280.1 28.866 194 107 3 89 281 361 524 5.63e-21 92.8
Msa0995430 AT1G48820.1 24.590 244 168 5 37 274 324 557 1.59e-19 88.6
Msa0995430 AT3G25810.1 24.303 251 172 5 49 281 347 597 2.28e-18 85.1
Msa0995430 AT4G16730.2 22.619 252 172 5 49 281 246 493 2.90e-18 84.7
Msa0995430 AT4G16730.1 22.800 250 170 5 49 279 292 537 3.30e-18 84.7
Msa0995430 AT4G16740.1 23.488 281 197 7 14 281 289 564 2.99e-16 79.0
Msa0995430 AT2G24210.1 22.433 263 188 5 35 281 328 590 1.51e-14 73.9
Msa0995430 AT1G31950.2 25.625 160 107 2 37 184 350 509 7.92e-14 71.6
Msa0995430 AT3G14540.2 30.000 100 70 0 89 188 408 507 3.44e-13 69.7

Find 41 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTATACATTGCAGGCTT+AGG 0.276774 6_4:-71676469 Msa0995430:CDS
AAACAGTTTGAGCAGAAAAT+AGG 0.306839 6_4:-71676319 Msa0995430:intron
TGAGGGAATATGATTTGAAT+AGG 0.340079 6_4:-71676267 Msa0995430:CDS
AATTTACCCATCTTCAATCT+TGG 0.347604 6_4:-71677694 Msa0995430:CDS
ATGCTGCTGCTATACATTGC+AGG 0.354080 6_4:-71676475 Msa0995430:CDS
AGGACATGTTTCTTCGTACT+TGG 0.357426 6_4:-71676299 Msa0995430:CDS
CGTACTTGGAATGTTATATG+AGG 0.388936 6_4:-71676285 Msa0995430:CDS
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_4:+71677528 None:intergenic
AATAAATACTCAAATTTCTA+CGG 0.417455 6_4:+71676033 None:intergenic
TGCATGTACTCCTCTGTTGT+TGG 0.418606 6_4:+71676614 None:intergenic
TAATTGCTTGGAGTATCTTC+CGG 0.426313 6_4:-71677547 Msa0995430:CDS
AAAAGAAAATTGACAACGCT+TGG 0.444020 6_4:-71676222 Msa0995430:CDS
TGCTATACATTGCAGGCTTA+GGG 0.448464 6_4:-71676468 Msa0995430:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_4:-71677559 Msa0995430:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_4:-71676555 Msa0995430:CDS
CTAGTCATCAAGTTTAGAGT+TGG 0.457744 6_4:-71677738 Msa0995430:CDS
ATAGTTAGCATTCAGCCATC+TGG 0.458951 6_4:+71676640 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_4:-71676554 Msa0995430:CDS
GAGGGAATATGATTTGAATA+GGG 0.475500 6_4:-71676266 Msa0995430:CDS
ATAAATACTCAAATTTCTAC+GGG 0.477038 6_4:+71676034 None:intergenic
AGAGCAAGAAATGAAGAAGA+AGG 0.482424 6_4:-71677475 Msa0995430:CDS
CGCTTGGAAAGATATAAATC+AGG 0.490061 6_4:-71676206 Msa0995430:CDS
TTGAGAACACACGTAAGAAT+AGG 0.491590 6_4:+71676154 None:intergenic
TTAGCAACCAAGATTGAAGA+TGG 0.515167 6_4:+71677687 None:intergenic
CGACAAAAGACATCTTTGAC+TGG 0.519009 6_4:-71676523 Msa0995430:CDS
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_4:+71676566 None:intergenic
ATAGGTAACGGAACTTCAGT+TGG 0.529746 6_4:+71676172 None:intergenic
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_4:+71676660 None:intergenic
CTTATATGAGTGAGGCCAGA+TGG 0.549142 6_4:-71676655 Msa0995430:CDS
GTACTTGGAATGTTATATGA+GGG 0.567173 6_4:-71676284 Msa0995430:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_4:-71676579 Msa0995430:CDS
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_4:-71676560 Msa0995430:CDS
CACATATCAACAATATCAAG+TGG 0.594145 6_4:-71676593 Msa0995430:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6_4:-71676094 Msa0995430:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_4:+71676567 None:intergenic
TAGCAACCAAGATTGAAGAT+GGG 0.615651 6_4:+71677688 None:intergenic
GACAAAAGACATCTTTGACT+GGG 0.626667 6_4:-71676522 Msa0995430:CDS
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_4:-71676663 Msa0995430:CDS
GGATGAAATTGTGTCAAGCG+AGG 0.675331 6_4:-71676447 Msa0995430:intron
ACACACGTAAGAATAGGTAA+CGG 0.686084 6_4:+71676160 None:intergenic
TAACTATATACCAACAACAG+AGG 0.703519 6_4:-71676624 Msa0995430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATATTAACGTTAAT+AGG + chr6_4:71677089-71677108 None:intergenic 10.0%
!! AATATAATATTAACGTTAAT+AGG + chr6_4:71677089-71677108 None:intergenic 10.0%
!!! ATTTCATTTTAAACTTTGTA+TGG - chr6_4:71676482-71676501 Msa0995430:CDS 15.0%
!!! AAACATTTTTACATCATTTT+AGG - chr6_4:71676583-71676602 Msa0995430:CDS 15.0%
!! TTGTAGAATTAATATTACAA+AGG + chr6_4:71676964-71676983 None:intergenic 15.0%
!! TTAACAACATTTAATTACAT+AGG - chr6_4:71677047-71677066 Msa0995430:intron 15.0%
!!! TTTAATTACATAGGTTTTTT+TGG - chr6_4:71677056-71677075 Msa0995430:intron 15.0%
!!! ATTTCATTTTAAACTTTGTA+TGG - chr6_4:71676482-71676501 Msa0995430:CDS 15.0%
!!! AAACATTTTTACATCATTTT+AGG - chr6_4:71676583-71676602 Msa0995430:CDS 15.0%
!! TTGTAGAATTAATATTACAA+AGG + chr6_4:71676964-71676983 None:intergenic 15.0%
!! TTAACAACATTTAATTACAT+AGG - chr6_4:71677047-71677066 Msa0995430:intron 15.0%
!!! TTTAATTACATAGGTTTTTT+TGG - chr6_4:71677056-71677075 Msa0995430:intron 15.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_4:71676220-71676239 Msa0995430:CDS 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_4:71676224-71676243 Msa0995430:CDS 20.0%
!!! ATGAAATTTTTGTTCAATTG+TGG + chr6_4:71676469-71676488 None:intergenic 20.0%
!! TGTAAAAAACTTATTATCCA+TGG - chr6_4:71676722-71676741 Msa0995430:intron 20.0%
!! TGCAAAAAAATTATTATCCA+TGG - chr6_4:71676878-71676897 Msa0995430:intron 20.0%
!!! TATCTTGACATTTTAATTAG+TGG - chr6_4:71676990-71677009 Msa0995430:intron 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_4:71676220-71676239 Msa0995430:CDS 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_4:71676224-71676243 Msa0995430:CDS 20.0%
!!! ATGAAATTTTTGTTCAATTG+TGG + chr6_4:71676469-71676488 None:intergenic 20.0%
!! TGTAAAAAACTTATTATCCA+TGG - chr6_4:71676722-71676741 Msa0995430:intron 20.0%
!! TGCAAAAAAATTATTATCCA+TGG - chr6_4:71676878-71676897 Msa0995430:intron 20.0%
!!! TATCTTGACATTTTAATTAG+TGG - chr6_4:71676990-71677009 Msa0995430:intron 20.0%
!! TTCTTTTAACAATAGAGCAA+TGG - chr6_4:71676191-71676210 Msa0995430:CDS 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_4:71676223-71676242 Msa0995430:CDS 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG + chr6_4:71676368-71676387 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG + chr6_4:71676369-71676388 None:intergenic 25.0%
! AAACTTTGTATGGTTATCAA+AGG - chr6_4:71676492-71676511 Msa0995430:CDS 25.0%
! AACTTTGTATGGTTATCAAA+GGG - chr6_4:71676493-71676512 Msa0995430:CDS 25.0%
!! TCATGAAGATACATTTTTCT+TGG + chr6_4:71676644-71676663 None:intergenic 25.0%
!!! TATCCATGGTTTTATTAACT+CGG - chr6_4:71676736-71676755 Msa0995430:intron 25.0%
! AAGAAAAATGTATCATCATG+AGG - chr6_4:71676798-71676817 Msa0995430:intron 25.0%
!! TTCTTTTAACAATAGAGCAA+TGG - chr6_4:71676191-71676210 Msa0995430:CDS 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_4:71676223-71676242 Msa0995430:CDS 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG + chr6_4:71676368-71676387 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG + chr6_4:71676369-71676388 None:intergenic 25.0%
! AAACTTTGTATGGTTATCAA+AGG - chr6_4:71676492-71676511 Msa0995430:CDS 25.0%
! AACTTTGTATGGTTATCAAA+GGG - chr6_4:71676493-71676512 Msa0995430:CDS 25.0%
!! TCATGAAGATACATTTTTCT+TGG + chr6_4:71676644-71676663 None:intergenic 25.0%
!!! TATCCATGGTTTTATTAACT+CGG - chr6_4:71676736-71676755 Msa0995430:intron 25.0%
! AAGAAAAATGTATCATCATG+AGG - chr6_4:71676798-71676817 Msa0995430:intron 25.0%
AATTTACCCATCTTCAATCT+TGG - chr6_4:71676104-71676123 Msa0995430:CDS 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_4:71676284-71676303 Msa0995430:CDS 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG + chr6_4:71676367-71676386 None:intergenic 30.0%
! AAAGTATCACCATAATGACT+TGG - chr6_4:71676618-71676637 Msa0995430:CDS 30.0%
TAACTGAGTTCATATAACCA+TGG + chr6_4:71676898-71676917 None:intergenic 30.0%
TAACTATATACCAACAACAG+AGG - chr6_4:71677174-71677193 Msa0995430:intron 30.0%
CACATATCAACAATATCAAG+TGG - chr6_4:71677205-71677224 Msa0995430:intron 30.0%
AAACAGTTTGAGCAGAAAAT+AGG - chr6_4:71677479-71677498 Msa0995430:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_4:71677514-71677533 Msa0995430:intron 30.0%
TGAGGGAATATGATTTGAAT+AGG - chr6_4:71677531-71677550 Msa0995430:intron 30.0%
GAGGGAATATGATTTGAATA+GGG - chr6_4:71677532-71677551 Msa0995430:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_4:71677564-71677583 None:intergenic 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG + chr6_4:71677577-71677596 None:intergenic 30.0%
AAAAGAAAATTGACAACGCT+TGG - chr6_4:71677576-71677595 Msa0995430:CDS 30.0%
AATTTACCCATCTTCAATCT+TGG - chr6_4:71676104-71676123 Msa0995430:CDS 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_4:71676284-71676303 Msa0995430:CDS 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG + chr6_4:71676367-71676386 None:intergenic 30.0%
! AAAGTATCACCATAATGACT+TGG - chr6_4:71676618-71676637 Msa0995430:CDS 30.0%
TAACTGAGTTCATATAACCA+TGG + chr6_4:71676898-71676917 None:intergenic 30.0%
TAACTATATACCAACAACAG+AGG - chr6_4:71677174-71677193 Msa0995430:intron 30.0%
CACATATCAACAATATCAAG+TGG - chr6_4:71677205-71677224 Msa0995430:intron 30.0%
AAACAGTTTGAGCAGAAAAT+AGG - chr6_4:71677479-71677498 Msa0995430:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_4:71677514-71677533 Msa0995430:intron 30.0%
TGAGGGAATATGATTTGAAT+AGG - chr6_4:71677531-71677550 Msa0995430:intron 30.0%
GAGGGAATATGATTTGAATA+GGG - chr6_4:71677532-71677551 Msa0995430:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_4:71677564-71677583 None:intergenic 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG + chr6_4:71677577-71677596 None:intergenic 30.0%
AAAAGAAAATTGACAACGCT+TGG - chr6_4:71677576-71677595 Msa0995430:CDS 30.0%
! CTAGTCATCAAGTTTAGAGT+TGG - chr6_4:71676060-71676079 Msa0995430:CDS 35.0%
TAGCAACCAAGATTGAAGAT+GGG + chr6_4:71676113-71676132 None:intergenic 35.0%
TTAGCAACCAAGATTGAAGA+TGG + chr6_4:71676114-71676133 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_4:71676239-71676258 Msa0995430:CDS 35.0%
! TAATTGCTTGGAGTATCTTC+CGG - chr6_4:71676251-71676270 Msa0995430:CDS 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_4:71676273-71676292 None:intergenic 35.0%
AGAGCAAGAAATGAAGAAGA+AGG - chr6_4:71676323-71676342 Msa0995430:intron 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG + chr6_4:71676360-71676379 None:intergenic 35.0%
! TTTTCTTGGCCAAGTCATTA+TGG + chr6_4:71676630-71676649 None:intergenic 35.0%
GAACCGAGTTAATAAAACCA+TGG + chr6_4:71676742-71676761 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_4:71677135-71677154 Msa0995430:intron 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_4:71677243-71677262 Msa0995430:intron 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_4:71677244-71677263 Msa0995430:intron 35.0%
GACAAAAGACATCTTTGACT+GGG - chr6_4:71677276-71677295 Msa0995430:intron 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_4:71677313-71677332 None:intergenic 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_4:71677513-71677532 Msa0995430:intron 35.0%
CGCTTGGAAAGATATAAATC+AGG - chr6_4:71677592-71677611 Msa0995430:CDS 35.0%
ACACACGTAAGAATAGGTAA+CGG + chr6_4:71677641-71677660 None:intergenic 35.0%
TTGAGAACACACGTAAGAAT+AGG + chr6_4:71677647-71677666 None:intergenic 35.0%
! CTAGTCATCAAGTTTAGAGT+TGG - chr6_4:71676060-71676079 Msa0995430:CDS 35.0%
TAGCAACCAAGATTGAAGAT+GGG + chr6_4:71676113-71676132 None:intergenic 35.0%
TTAGCAACCAAGATTGAAGA+TGG + chr6_4:71676114-71676133 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_4:71676239-71676258 Msa0995430:CDS 35.0%
! TAATTGCTTGGAGTATCTTC+CGG - chr6_4:71676251-71676270 Msa0995430:CDS 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_4:71676273-71676292 None:intergenic 35.0%
AGAGCAAGAAATGAAGAAGA+AGG - chr6_4:71676323-71676342 Msa0995430:intron 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG + chr6_4:71676360-71676379 None:intergenic 35.0%
! TTTTCTTGGCCAAGTCATTA+TGG + chr6_4:71676630-71676649 None:intergenic 35.0%
GAACCGAGTTAATAAAACCA+TGG + chr6_4:71676742-71676761 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_4:71677135-71677154 Msa0995430:intron 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_4:71677243-71677262 Msa0995430:intron 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_4:71677244-71677263 Msa0995430:intron 35.0%
GACAAAAGACATCTTTGACT+GGG - chr6_4:71677276-71677295 Msa0995430:intron 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_4:71677313-71677332 None:intergenic 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_4:71677513-71677532 Msa0995430:intron 35.0%
CGCTTGGAAAGATATAAATC+AGG - chr6_4:71677592-71677611 Msa0995430:CDS 35.0%
ACACACGTAAGAATAGGTAA+CGG + chr6_4:71677641-71677660 None:intergenic 35.0%
TTGAGAACACACGTAAGAAT+AGG + chr6_4:71677647-71677666 None:intergenic 35.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG + chr6_4:71676361-71676380 None:intergenic 40.0%
ATAGTTAGCATTCAGCCATC+TGG + chr6_4:71677161-71677180 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_4:71677238-71677257 Msa0995430:intron 40.0%
CGACAAAAGACATCTTTGAC+TGG - chr6_4:71677275-71677294 Msa0995430:intron 40.0%
TGCTATACATTGCAGGCTTA+GGG - chr6_4:71677330-71677349 Msa0995430:intron 40.0%
AGGACATGTTTCTTCGTACT+TGG - chr6_4:71677499-71677518 Msa0995430:intron 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG + chr6_4:71677629-71677648 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_4:71677664-71677683 Msa0995430:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_4:71677704-71677723 Msa0995430:CDS 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG + chr6_4:71676361-71676380 None:intergenic 40.0%
ATAGTTAGCATTCAGCCATC+TGG + chr6_4:71677161-71677180 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_4:71677238-71677257 Msa0995430:intron 40.0%
CGACAAAAGACATCTTTGAC+TGG - chr6_4:71677275-71677294 Msa0995430:intron 40.0%
TGCTATACATTGCAGGCTTA+GGG - chr6_4:71677330-71677349 Msa0995430:intron 40.0%
AGGACATGTTTCTTCGTACT+TGG - chr6_4:71677499-71677518 Msa0995430:intron 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG + chr6_4:71677629-71677648 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_4:71677664-71677683 Msa0995430:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_4:71677704-71677723 Msa0995430:CDS 40.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_4:71677141-71677160 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_4:71677143-71677162 Msa0995430:intron 45.0%
TGCATGTACTCCTCTGTTGT+TGG + chr6_4:71677187-71677206 None:intergenic 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_4:71677219-71677238 Msa0995430:intron 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_4:71677234-71677253 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_4:71677235-71677254 None:intergenic 45.0%
ATGCTGCTGCTATACATTGC+AGG - chr6_4:71677323-71677342 Msa0995430:intron 45.0%
CTGCTATACATTGCAGGCTT+AGG - chr6_4:71677329-71677348 Msa0995430:intron 45.0%
GGATGAAATTGTGTCAAGCG+AGG - chr6_4:71677351-71677370 Msa0995430:intron 45.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_4:71677141-71677160 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_4:71677143-71677162 Msa0995430:intron 45.0%
TGCATGTACTCCTCTGTTGT+TGG + chr6_4:71677187-71677206 None:intergenic 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_4:71677219-71677238 Msa0995430:intron 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_4:71677234-71677253 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_4:71677235-71677254 None:intergenic 45.0%
ATGCTGCTGCTATACATTGC+AGG - chr6_4:71677323-71677342 Msa0995430:intron 45.0%
CTGCTATACATTGCAGGCTT+AGG - chr6_4:71677329-71677348 Msa0995430:intron 45.0%
GGATGAAATTGTGTCAAGCG+AGG - chr6_4:71677351-71677370 Msa0995430:intron 45.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 71676042 71677778 71676042 ID=Msa0995430;Name=Msa0995430
chr6_4 mRNA 71676042 71677778 71676042 ID=Msa0995430-mRNA-1;Parent=Msa0995430;Name=Msa0995430-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0.33|0.25|4|0|281
chr6_4 exon 71677537 71677778 71677537 ID=Msa0995430-mRNA-1:exon:13356;Parent=Msa0995430-mRNA-1
chr6_4 exon 71677441 71677501 71677441 ID=Msa0995430-mRNA-1:exon:13355;Parent=Msa0995430-mRNA-1
chr6_4 exon 71676448 71676696 71676448 ID=Msa0995430-mRNA-1:exon:13354;Parent=Msa0995430-mRNA-1
chr6_4 exon 71676042 71676335 71676042 ID=Msa0995430-mRNA-1:exon:13353;Parent=Msa0995430-mRNA-1
chr6_4 CDS 71677537 71677778 71677537 ID=Msa0995430-mRNA-1:cds;Parent=Msa0995430-mRNA-1
chr6_4 CDS 71677441 71677501 71677441 ID=Msa0995430-mRNA-1:cds;Parent=Msa0995430-mRNA-1
chr6_4 CDS 71676448 71676696 71676448 ID=Msa0995430-mRNA-1:cds;Parent=Msa0995430-mRNA-1
chr6_4 CDS 71676042 71676335 71676042 ID=Msa0995430-mRNA-1:cds;Parent=Msa0995430-mRNA-1
Gene Sequence

>Msa0995430

ATGAAATTTATCTTTAATCTAGTCATCAAGTTTAGAGTTGGATTTTTTTTAATAATAACTTCAATTTACCCATCTTCAATCTTGGTTGCTAATTCAAATTTTTTGAGAAATATAGACATTTTCTTCGCATGTATTTCTACACGATATGATTCTTTTAACAATAGAGCAATGGTTAATATTGCAATCAAAATGATTTTTAGGTGGGATATTAATTGCTTGGAGTATCTTCCGGATTACACGAAAGATAGAGCAAGAAATGAAGAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATGCTAACTATATACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCGACAAAAGACATCTTTGACTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATACATTGCAGGCTTAGGGATGAAATTGTGTCAAGCGAGTTTGAGCAGAAAATAGGACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATTTGAATAGGGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATAAATCAGGAATGTCTTAAGCCAACTGAAGTTCCGTTACCTATTCTTACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTAGAAATTTGA

Protein sequence

>Msa0995430

MKFIFNLVIKFRVGFFLIITSIYPSSILVANSNFLRNIDIFFACISTRYDSFNNRAMVNIAIKMIFRWDINCLEYLPDYTKDRARNEEEGREYTLDPFLKEFKNIIQAYMSEARWLNANYIPTTEEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKIGHVSSYLECYMREYDLNREAAIQECQKKIDNAWKDINQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*