Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922550 | XP_013452780.1 | 97.996 | 499 | 10 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1019 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922550 | sp|P54767|DCE_SOLLC | 76.667 | 510 | 100 | 3 | 1 | 499 | 1 | 502 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0922550 | 0.800198 | 1.612640e-48 | -8.615850e-47 |
| Msa0065390 | Msa0922550 | 0.823675 | 1.219038e-53 | -8.615850e-47 |
| Msa0110710 | Msa0922550 | 0.823952 | 1.050105e-53 | -8.615850e-47 |
| Msa0606060 | Msa0922550 | 0.800388 | 1.475107e-48 | -8.615850e-47 |
| Msa0635990 | Msa0922550 | 0.814725 | 1.331258e-51 | -8.615850e-47 |
| Msa0686610 | Msa0922550 | 0.802651 | 5.071130e-49 | -8.615850e-47 |
| Msa0714020 | Msa0922550 | 0.803669 | 3.122503e-49 | -8.615850e-47 |
| Msa0716350 | Msa0922550 | 0.821252 | 4.456430e-53 | -8.615850e-47 |
| Msa0740420 | Msa0922550 | 0.802932 | 4.437196e-49 | -8.615850e-47 |
| Msa0123940 | Msa0922550 | 0.807227 | 5.602171e-50 | -8.615850e-47 |
| Msa0230400 | Msa0922550 | 0.809394 | 1.933703e-50 | -8.615850e-47 |
| Msa0380420 | Msa0922550 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0292070 | Msa0922550 | 0.840527 | 8.241886e-58 | -8.615850e-47 |
| Msa0906300 | Msa0922550 | 0.800092 | 1.694628e-48 | -8.615850e-47 |
| Msa0922550 | Msa1252730 | 0.811987 | 5.317463e-51 | -8.615850e-47 |
| Msa0922550 | Msa1375630 | 0.806167 | 9.381448e-50 | -8.615850e-47 |
| Msa0922550 | Msa1376530 | 0.810893 | 9.192435e-51 | -8.615850e-47 |
| Msa0922550 | Msa1414970 | 0.824409 | 8.197998e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922550 | MtrunA17_Chr6g0480631 | 97.996 | 499 | 10 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1019 |
| Msa0922550 | MtrunA17_Chr3g0109901 | 75.855 | 497 | 111 | 2 | 1 | 491 | 1 | 494 | 0.0 | 785 |
| Msa0922550 | MtrunA17_Chr8g0375301 | 70.913 | 471 | 128 | 2 | 12 | 473 | 9 | 479 | 0.0 | 702 |
| Msa0922550 | MtrunA17_Chr5g0433931 | 69.682 | 409 | 116 | 2 | 99 | 499 | 1 | 409 | 0.0 | 600 |
| Msa0922550 | MtrunA17_Chr5g0433921 | 79.000 | 100 | 18 | 1 | 1 | 100 | 1 | 97 | 1.17e-49 | 165 |
| Msa0922550 | MtrunA17_Chr7g0222381 | 26.519 | 362 | 234 | 11 | 86 | 436 | 159 | 499 | 1.28e-20 | 95.1 |
| Msa0922550 | MtrunA17_Chr5g0432951 | 76.923 | 39 | 9 | 0 | 255 | 293 | 15 | 53 | 3.34e-15 | 71.2 |
| Msa0922550 | MtrunA17_Chr5g0432961 | 52.174 | 69 | 33 | 0 | 375 | 443 | 13 | 81 | 2.06e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922550 | AT2G02010.2 | 77.576 | 495 | 102 | 2 | 1 | 495 | 53 | 538 | 0.0 | 810 |
| Msa0922550 | AT2G02010.1 | 77.576 | 495 | 102 | 2 | 1 | 495 | 1 | 486 | 0.0 | 810 |
| Msa0922550 | AT5G17330.1 | 76.228 | 509 | 104 | 4 | 1 | 499 | 1 | 502 | 0.0 | 797 |
| Msa0922550 | AT3G17760.2 | 78.004 | 491 | 101 | 3 | 12 | 499 | 8 | 494 | 0.0 | 795 |
| Msa0922550 | AT3G17760.1 | 78.004 | 491 | 101 | 3 | 12 | 499 | 8 | 494 | 0.0 | 795 |
| Msa0922550 | AT1G65960.2 | 75.649 | 501 | 113 | 3 | 1 | 499 | 1 | 494 | 0.0 | 785 |
| Msa0922550 | AT2G02000.1 | 74.696 | 494 | 116 | 2 | 1 | 494 | 1 | 485 | 0.0 | 781 |
| Msa0922550 | AT1G65960.1 | 75.000 | 368 | 87 | 2 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| Msa0922550 | AT1G65960.3 | 75.000 | 368 | 87 | 2 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| Msa0922550 | AT1G65960.4 | 75.000 | 368 | 87 | 2 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| Msa0922550 | AT3G17720.1 | 74.074 | 162 | 39 | 1 | 94 | 255 | 27 | 185 | 2.11e-82 | 254 |
| Msa0922550 | AT1G27980.1 | 25.138 | 362 | 239 | 11 | 84 | 434 | 160 | 500 | 9.92e-18 | 86.7 |
Find 115 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTGTGTTGCAGCCATTT+TGG | 0.165886 | 6_2:-61244851 | Msa0922550:CDS |
| TTCCATTGTTGCTTTATCTA+TGG | 0.221404 | 6_2:-61243533 | Msa0922550:three_prime_UTR |
| CTGGTATTGGTTGGGTTGTT+TGG | 0.223066 | 6_2:-61244612 | Msa0922550:CDS |
| TTCTCTACCCTGATCTTCTA+TGG | 0.227683 | 6_2:-61244699 | Msa0922550:CDS |
| TTCATTCATTCATATAAATA+TGG | 0.237410 | 6_2:+61243478 | None:intergenic |
| CTCAATACTACCAATTTATA+CGG | 0.248455 | 6_2:-61244333 | Msa0922550:CDS |
| AGTTGAAGAAATCACCATTT+TGG | 0.255929 | 6_2:+61248246 | None:intergenic |
| ATCTGATATGCTGCATCTTT+TGG | 0.270173 | 6_2:+61248031 | None:intergenic |
| TCCTGTCACCACTGAGCTTC+AGG | 0.302034 | 6_2:-61247873 | Msa0922550:intron |
| TAACAAGAATTATGTTGATA+TGG | 0.304779 | 6_2:-61247903 | Msa0922550:CDS |
| CCGTCCTCCGAGTGGTGATT+AGG | 0.314844 | 6_2:-61243868 | Msa0922550:CDS |
| CGAAGCCAAGCCGTATAAAT+TGG | 0.316347 | 6_2:+61244323 | None:intergenic |
| AATATACTACACAGGTTTGT+TGG | 0.320207 | 6_2:-61244981 | Msa0922550:intron |
| GGACTCAAGCTGAGATTCTT+AGG | 0.355745 | 6_2:-61243688 | Msa0922550:CDS |
| GATAAGCCTAACATAGTTAC+TGG | 0.359552 | 6_2:-61246564 | Msa0922550:CDS |
| CGGAAATCCCATAGAAGATC+AGG | 0.359620 | 6_2:+61244691 | None:intergenic |
| GGTCTTGTTTACCCTGGTAT+TGG | 0.363471 | 6_2:-61244625 | Msa0922550:CDS |
| GAGGCATAAAGCTGACTTGC+CGG | 0.372412 | 6_2:-61244590 | Msa0922550:CDS |
| AGTCAGCGTTGAACCCAAAA+TGG | 0.376738 | 6_2:+61244837 | None:intergenic |
| AATGATGAGTTGATGTTAGA+TGG | 0.378531 | 6_2:-61248004 | Msa0922550:CDS |
| CATCTATTCAATGCTCCTAT+TGG | 0.381425 | 6_2:-61246705 | Msa0922550:CDS |
| TGGCTTCATTTGTGACTACT+TGG | 0.381755 | 6_2:-61247964 | Msa0922550:CDS |
| CAGAACTCATCCAACCAAAA+TGG | 0.395608 | 6_2:-61248260 | Msa0922550:exon |
| ATATACTACACAGGTTTGTT+GGG | 0.398918 | 6_2:-61244980 | Msa0922550:intron |
| CTCGCAGCATCTACATGAAT+TGG | 0.399331 | 6_2:+61244742 | None:intergenic |
| CGTCCTCCGAGTGGTGATTA+GGG | 0.403949 | 6_2:-61243867 | Msa0922550:CDS |
| TTCTAGATACGTGCGTGAAC+AGG | 0.406297 | 6_2:-61248176 | Msa0922550:CDS |
| ACCATTTCAACAGCTTTCAA+TGG | 0.408300 | 6_2:+61244886 | None:intergenic |
| CAATGCTCCTATTGGTGAAA+AGG | 0.409429 | 6_2:-61246697 | Msa0922550:CDS |
| TACTACCAATTTATACGGCT+TGG | 0.415144 | 6_2:-61244328 | Msa0922550:CDS |
| AAAATTTGCTAGGTACTTTG+AGG | 0.418983 | 6_2:-61244956 | Msa0922550:CDS |
| CATTGGAAGAAGCTTGTTGA+TGG | 0.422282 | 6_2:-61243665 | Msa0922550:CDS |
| GAAGTTAAGAAAGATATTAC+AGG | 0.423340 | 6_2:-61243710 | Msa0922550:CDS |
| TTGTTTACCCTGGTATTGGT+TGG | 0.425703 | 6_2:-61244621 | Msa0922550:CDS |
| AACGCTGACTGGAGAGTTTG+AGG | 0.427297 | 6_2:-61244824 | Msa0922550:CDS |
| TGTTTACCCTGGTATTGGTT+GGG | 0.431991 | 6_2:-61244620 | Msa0922550:CDS |
| GTACTTTGAGGTTGAGCTAA+AGG | 0.439469 | 6_2:-61244944 | Msa0922550:CDS |
| GAGAAATTCAATGTGAAAGT+TGG | 0.439670 | 6_2:+61244526 | None:intergenic |
| AAGGAAGGAATTGAGAAAAC+AGG | 0.440850 | 6_2:-61244049 | Msa0922550:CDS |
| ATTTATACGGCTTGGCTTCG+AGG | 0.445868 | 6_2:-61244320 | Msa0922550:intron |
| TGGAAAACCAAGGCTTAACT+TGG | 0.451331 | 6_2:-61247984 | Msa0922550:CDS |
| TTAGCTCCAGTAACTATGTT+AGG | 0.451511 | 6_2:+61246558 | None:intergenic |
| TCTCTACCCTGATCTTCTAT+GGG | 0.463816 | 6_2:-61244698 | Msa0922550:CDS |
| ATGGGATTTCCGTTTGCCAT+TGG | 0.465556 | 6_2:-61244680 | Msa0922550:CDS |
| AAGCTGAGATTCTTAGGCAT+TGG | 0.466661 | 6_2:-61243682 | Msa0922550:CDS |
| CTTGTTGATGGCAAGAGAGT+TGG | 0.470062 | 6_2:-61243653 | Msa0922550:CDS |
| GCAGTAGGAGTTGGAACTGT+AGG | 0.471508 | 6_2:-61246669 | Msa0922550:CDS |
| GTATTGGTTGGGTTGTTTGG+AGG | 0.473665 | 6_2:-61244609 | Msa0922550:CDS |
| AAAATACGGATGGATAGTTC+CGG | 0.478907 | 6_2:-61243924 | Msa0922550:CDS |
| GCAGACCATCTGAGAAAATA+CGG | 0.484458 | 6_2:-61243938 | Msa0922550:CDS |
| CAAGAGAGTTGGAGCATGCT+AGG | 0.485182 | 6_2:-61243642 | Msa0922550:exon |
| TTCATTTGTGACTACTTGGA+TGG | 0.490554 | 6_2:-61247960 | Msa0922550:CDS |
| GGAAGATTTCAGCTGTAGCT+TGG | 0.490585 | 6_2:-61243846 | Msa0922550:CDS |
| CAAACAACCCAACCAATACC+AGG | 0.491052 | 6_2:+61244613 | None:intergenic |
| AAGGAAACTGCAGTAGGAGT+TGG | 0.493831 | 6_2:-61246678 | Msa0922550:CDS |
| TCCATTGAAAGCTGTTGAAA+TGG | 0.494508 | 6_2:-61244887 | Msa0922550:CDS |
| GCATACATTTGATGTGTGTA+AGG | 0.494596 | 6_2:-61243560 | Msa0922550:three_prime_UTR |
| AAAGCCACTCACAACAATCA+AGG | 0.494924 | 6_2:+61243591 | None:intergenic |
| AATGAAGCCAAGTTAAGCCT+TGG | 0.498497 | 6_2:+61247977 | None:intergenic |
| AAAATTGTCTCCAAGGACAT+AGG | 0.500052 | 6_2:-61244019 | Msa0922550:CDS |
| ACCTGAAGCTCAGTGGTGAC+AGG | 0.517726 | 6_2:+61247872 | None:intergenic |
| AAGGTTTAAAATTGTCTCCA+AGG | 0.518110 | 6_2:-61244026 | Msa0922550:CDS |
| GCTACTGTCTTTCAGAGAGA+AGG | 0.525070 | 6_2:+61243982 | None:intergenic |
| ACTGATCTTTGTGAAGATAG+AGG | 0.525765 | 6_2:+61248326 | None:intergenic |
| CTCCATAGATAAAGCAACAA+TGG | 0.526759 | 6_2:+61243531 | None:intergenic |
| AAGTGGCACACCTATGTCCT+TGG | 0.530991 | 6_2:+61244009 | None:intergenic |
| TGAGTGTGATAAGCTTATCA+TGG | 0.535116 | 6_2:-61247933 | Msa0922550:CDS |
| TCAGAGGCAATAATGTTGGC+TGG | 0.535753 | 6_2:-61246642 | Msa0922550:CDS |
| AGAAGATCAGGGTAGAGAAA+CGG | 0.536404 | 6_2:+61244703 | None:intergenic |
| TGCGTCTGCTGGCATTGTGT+AGG | 0.543361 | 6_2:+61243901 | None:intergenic |
| CAGTAGGAGTTGGAACTGTA+GGG | 0.543728 | 6_2:-61246668 | Msa0922550:CDS |
| AAAAGAATAAGGAGACAGGA+TGG | 0.547117 | 6_2:-61244771 | Msa0922550:CDS |
| AATGTTAGCGGTCACAAGTA+CGG | 0.552630 | 6_2:-61244646 | Msa0922550:CDS |
| GTCATCAGAGGCAATAATGT+TGG | 0.553216 | 6_2:-61246646 | Msa0922550:CDS |
| TTCAAAAGATGCTCATGTTG+CGG | 0.558105 | 6_2:-61243756 | Msa0922550:CDS |
| CACAGAGGATTACTATGTGA+TGG | 0.560082 | 6_2:-61244911 | Msa0922550:CDS |
| GTTCATAGATGCATGGACAT+TGG | 0.563250 | 6_2:+61243500 | None:intergenic |
| AAACCCTTGATTGTTGTGAG+TGG | 0.565159 | 6_2:-61243595 | Msa0922550:three_prime_UTR |
| GTGAAAAGTATCAATGTTAG+CGG | 0.565895 | 6_2:-61244658 | Msa0922550:CDS |
| AGAAGCAAAAGTGCATGCTA+TGG | 0.570371 | 6_2:+61248195 | None:intergenic |
| TTCACATTGAATTTCTCCAA+AGG | 0.571801 | 6_2:-61244520 | Msa0922550:intron |
| CATGTAGATGCTGCGAGTGG+AGG | 0.573182 | 6_2:-61244736 | Msa0922550:CDS |
| TCTGCTGGCATTGTGTAGGC+CGG | 0.579437 | 6_2:+61243905 | None:intergenic |
| CAAAATGGCTGCAACACAGA+TGG | 0.582491 | 6_2:+61244852 | None:intergenic |
| ACTATGTTAGGCTTATCGTA+TGG | 0.583233 | 6_2:+61246570 | None:intergenic |
| AAAGAATAAGGAGACAGGAT+GGG | 0.591516 | 6_2:-61244770 | Msa0922550:CDS |
| GGCGAACACAAGAATTCTGA+AGG | 0.592744 | 6_2:-61244068 | Msa0922550:CDS |
| AACACAAGAATTCTGAAGGA+AGG | 0.596220 | 6_2:-61244064 | Msa0922550:CDS |
| AAATATGGTTCATAGATGCA+TGG | 0.597106 | 6_2:+61243493 | None:intergenic |
| AAGCCACTCACAACAATCAA+GGG | 0.602897 | 6_2:+61243592 | None:intergenic |
| ACCATCTGAGAAAATACGGA+TGG | 0.603176 | 6_2:-61243934 | Msa0922550:CDS |
| AGTTACTGGAGCTAATGTGC+AGG | 0.605359 | 6_2:-61246550 | Msa0922550:intron |
| ATGATAAGCTTATCACACTC+AGG | 0.609818 | 6_2:+61247935 | None:intergenic |
| TTCATCATAAATGTATACAA+AGG | 0.611494 | 6_2:+61243442 | None:intergenic |
| GGTGAAAAGGAAACTGCAGT+AGG | 0.612706 | 6_2:-61246684 | Msa0922550:CDS |
| TGATCACTTATTCTAAGTAG+TGG | 0.612720 | 6_2:-61248383 | Msa0922550:five_prime_UTR |
| CCTAATCACCACTCGGAGGA+CGG | 0.616395 | 6_2:+61243868 | None:intergenic |
| AAGGAATTGAGAAAACAGGA+AGG | 0.618569 | 6_2:-61244045 | Msa0922550:CDS |
| AAATGTGATGGAAAATTGCA+TGG | 0.618817 | 6_2:-61244089 | Msa0922550:CDS |
| TTCAGAGAGAAGGCAACAAG+TGG | 0.622295 | 6_2:+61243992 | None:intergenic |
| GGAAATCCCATAGAAGATCA+GGG | 0.625993 | 6_2:+61244692 | None:intergenic |
| TCTTTGATAACATTAAGTAG+TGG | 0.626567 | 6_2:-61248350 | Msa0922550:five_prime_UTR |
| AAGTACGGTCTTGTTTACCC+TGG | 0.636562 | 6_2:-61244631 | Msa0922550:CDS |
| TGGAACTGTAGGGTCATCAG+AGG | 0.658360 | 6_2:-61246658 | Msa0922550:CDS |
| AATCTTCCCTAATCACCACT+CGG | 0.661532 | 6_2:+61243861 | None:intergenic |
| ATTCATGTAGATGCTGCGAG+TGG | 0.665981 | 6_2:-61244739 | Msa0922550:CDS |
| CAGACAAAGAGAAAATCAGA+AGG | 0.674198 | 6_2:-61246597 | Msa0922550:CDS |
| GTGCTATTATATTCACACAC+CGG | 0.687463 | 6_2:+61246727 | None:intergenic |
| AAGTTAAGAAAGATATTACA+GGG | 0.689885 | 6_2:-61243709 | Msa0922550:CDS |
| TGATGTTAGATGGAAAACCA+AGG | 0.691803 | 6_2:-61247994 | Msa0922550:CDS |
| AAACAACCCAACCAATACCA+GGG | 0.700278 | 6_2:+61244614 | None:intergenic |
| TAAACATACCTGAAGCTCAG+TGG | 0.710362 | 6_2:+61247865 | None:intergenic |
| TATCGCGAGTGAGACAAGTG+AGG | 0.713496 | 6_2:-61243732 | Msa0922550:CDS |
| CTTCCCTAATCACCACTCGG+AGG | 0.723923 | 6_2:+61243864 | None:intergenic |
| AAAGGAAGTGAAACTCACAG+AGG | 0.773932 | 6_2:-61244926 | Msa0922550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATAAGTTATCTTA+TGG | - | chr6_2:61244398-61244417 | Msa0922550:intron | 10.0% |
| !!! | GAAAATATCATTTTTTTTAA+TGG | - | chr6_2:61244999-61245018 | Msa0922550:intron | 10.0% |
| !!! | ATACAAAATCTTAATTTTTC+TGG | + | chr6_2:61245734-61245753 | None:intergenic | 15.0% |
| !!! | TTTATTATCTTTTGATTTTC+TGG | - | chr6_2:61246279-61246298 | Msa0922550:intron | 15.0% |
| !! | TTCATTCATTCATATAAATA+TGG | + | chr6_2:61248498-61248517 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTAAGGAAGAAA+GGG | + | chr6_2:61243839-61243858 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTAAGGAAGAA+AGG | + | chr6_2:61243840-61243859 | None:intergenic | 20.0% |
| !! | TAACAAGAATTATGTTGATA+TGG | - | chr6_2:61244070-61244089 | Msa0922550:CDS | 20.0% |
| !!! | TGAGCAAATTTTAAACTAAA+AGG | - | chr6_2:61244519-61244538 | Msa0922550:intron | 20.0% |
| !! | AATTATTATTGCACAGTAAA+AGG | - | chr6_2:61244852-61244871 | Msa0922550:CDS | 20.0% |
| !! | ATTATTATTGCACAGTAAAA+GGG | - | chr6_2:61244853-61244872 | Msa0922550:CDS | 20.0% |
| !!! | ATGATAATTTTAAGGAGTAA+AGG | + | chr6_2:61244948-61244967 | None:intergenic | 20.0% |
| !! | CTGTTACAATTTAAATATCT+TGG | - | chr6_2:61245128-61245147 | Msa0922550:intron | 20.0% |
| !! | GATGAAACAATAAATTTAGT+GGG | + | chr6_2:61246547-61246566 | None:intergenic | 20.0% |
| !! | TGATGAAACAATAAATTTAG+TGG | + | chr6_2:61246548-61246567 | None:intergenic | 20.0% |
| !! | ACTTCTTACTAAAAAGAATA+AGG | - | chr6_2:61247191-61247210 | Msa0922550:intron | 20.0% |
| !! | TCAAGTAAATATATTACCTT+TGG | + | chr6_2:61247472-61247491 | None:intergenic | 20.0% |
| !! | TGTATAAGAAAATAAGTAAC+AGG | + | chr6_2:61247832-61247851 | None:intergenic | 20.0% |
| !! | AAGTTAAGAAAGATATTACA+GGG | - | chr6_2:61248264-61248283 | Msa0922550:five_prime_UTR | 20.0% |
| !! | TCTTTGATAACATTAAGTAG+TGG | - | chr6_2:61243623-61243642 | Msa0922550:three_prime_UTR | 25.0% |
| !!! | TAGGTGTGATGTTTTTTTTA+AGG | + | chr6_2:61243848-61243867 | None:intergenic | 25.0% |
| !!! | ACCTAGTTTTTTTTGTAATG+AGG | - | chr6_2:61243863-61243882 | Msa0922550:CDS | 25.0% |
| ! | ACCTCATTACAAAAAAAACT+AGG | + | chr6_2:61243867-61243886 | None:intergenic | 25.0% |
| ! | CTATATCAACACATAAACAT+AGG | + | chr6_2:61243897-61243916 | None:intergenic | 25.0% |
| !! | CTATGTTTATGTGTTGATAT+AGG | - | chr6_2:61243895-61243914 | Msa0922550:CDS | 25.0% |
| !! | TAAATTGATGGATGAGTTTA+AGG | + | chr6_2:61244546-61244565 | None:intergenic | 25.0% |
| ! | AGTTTCTCTCTTTAAATCTA+AGG | - | chr6_2:61244616-61244635 | Msa0922550:CDS | 25.0% |
| !! | CACCATTATAGTTTGAAATT+GGG | + | chr6_2:61244680-61244699 | None:intergenic | 25.0% |
| !! | ACACCATTATAGTTTGAAAT+TGG | + | chr6_2:61244681-61244700 | None:intergenic | 25.0% |
| !!! | AAGTCTTGATTTTGAGTAAT+TGG | - | chr6_2:61244734-61244753 | Msa0922550:CDS | 25.0% |
| !!! | AGTCTTGATTTTGAGTAATT+GGG | - | chr6_2:61244735-61244754 | Msa0922550:CDS | 25.0% |
| !!! | TTTGATCTTTGAAACTTGTT+TGG | - | chr6_2:61244780-61244799 | Msa0922550:CDS | 25.0% |
| !! | AGCAGAGAATGATAATTTTA+AGG | + | chr6_2:61244956-61244975 | None:intergenic | 25.0% |
| !! | TATTTTCCCTTTCTTCAAAA+AGG | + | chr6_2:61244986-61245005 | None:intergenic | 25.0% |
| !! | TTGTAGGTATCAAATTTTGA+GGG | + | chr6_2:61245032-61245051 | None:intergenic | 25.0% |
| !!! | AAGATCTGATAATTTGTTGT+AGG | + | chr6_2:61245048-61245067 | None:intergenic | 25.0% |
| !! | ATTATCAGATCTTTTGTGTT+TGG | - | chr6_2:61245055-61245074 | Msa0922550:intron | 25.0% |
| ! | ACAATATGCAAAACTACATA+GGG | + | chr6_2:61245866-61245885 | None:intergenic | 25.0% |
| ! | AACAATATGCAAAACTACAT+AGG | + | chr6_2:61245867-61245886 | None:intergenic | 25.0% |
| ! | AAAATTAAGGTTCAAAATGG+TGG | + | chr6_2:61246323-61246342 | None:intergenic | 25.0% |
| ! | CAGAAAATTAAGGTTCAAAA+TGG | + | chr6_2:61246326-61246345 | None:intergenic | 25.0% |
| !!! | GAATATTGATTCTACAATAC+TGG | + | chr6_2:61246637-61246656 | None:intergenic | 25.0% |
| !! | ACAATTTTCATAAGCTATCA+TGG | + | chr6_2:61246822-61246841 | None:intergenic | 25.0% |
| !!! | CTGTGTAGTATATTTTAACA+AGG | + | chr6_2:61246986-61247005 | None:intergenic | 25.0% |
| ! | CTTGTTAAAATATACTACAC+AGG | - | chr6_2:61246984-61247003 | Msa0922550:intron | 25.0% |
| !! | GTTTTTCACATCAATTATCT+CGG | - | chr6_2:61247414-61247433 | Msa0922550:intron | 25.0% |
| ! | GTAATATATTTACTTGACAC+AGG | - | chr6_2:61247475-61247494 | Msa0922550:intron | 25.0% |
| ! | CAATGTATGACAAAATTCAA+AGG | + | chr6_2:61247501-61247520 | None:intergenic | 25.0% |
| !! | CTTTGAATTTTGTCATACAT+TGG | - | chr6_2:61247499-61247518 | Msa0922550:intron | 25.0% |
| ! | GAAATACAAAGCAACATTAA+GGG | + | chr6_2:61247593-61247612 | None:intergenic | 25.0% |
| ! | CTCAATACTACCAATTTATA+CGG | - | chr6_2:61247640-61247659 | Msa0922550:intron | 25.0% |
| !!! | TGTTATTTTTCTTGCTCTAA+GGG | - | chr6_2:61247855-61247874 | Msa0922550:intron | 25.0% |
| !! | TCTTTTGAATTGATAGAACT+TGG | + | chr6_2:61248206-61248225 | None:intergenic | 25.0% |
| ! | GAAGTTAAGAAAGATATTAC+AGG | - | chr6_2:61248263-61248282 | Msa0922550:exon | 25.0% |
| ! | TCTAAGACATGAAAAATGTG+AGG | - | chr6_2:61243543-61243562 | Msa0922550:three_prime_UTR | 30.0% |
| TGATCACTTATTCTAAGTAG+TGG | - | chr6_2:61243590-61243609 | Msa0922550:three_prime_UTR | 30.0% | |
| ! | AGTTGAAGAAATCACCATTT+TGG | + | chr6_2:61243730-61243749 | None:intergenic | 30.0% |
| ! | TCTTTTGGTATAGAATTCTC+TGG | + | chr6_2:61243930-61243949 | None:intergenic | 30.0% |
| !! | AATGATGAGTTGATGTTAGA+TGG | - | chr6_2:61243969-61243988 | Msa0922550:CDS | 30.0% |
| ! | TTGATCAAGATTTTAAACCG+TGG | - | chr6_2:61244146-61244165 | Msa0922550:intron | 30.0% |
| AGATAGGATCTTTGATATTG+CGG | - | chr6_2:61244179-61244198 | Msa0922550:intron | 30.0% | |
| AATAAGACTAAGTGCATGTT+TGG | - | chr6_2:61244215-61244234 | Msa0922550:intron | 30.0% | |
| ! | ATTTTGCAAAAGCTACATCA+GGG | + | chr6_2:61244276-61244295 | None:intergenic | 30.0% |
| ! | ATGTAGCTTTTGCAAAATCA+GGG | - | chr6_2:61244278-61244297 | Msa0922550:intron | 30.0% |
| GCTCATCTATAATTTCGATA+TGG | + | chr6_2:61244504-61244523 | None:intergenic | 30.0% | |
| ATCAATTTAGTCCTTGAGTA+GGG | - | chr6_2:61244557-61244576 | Msa0922550:CDS | 30.0% | |
| TATACTCTCATCCATCAATT+TGG | + | chr6_2:61244584-61244603 | None:intergenic | 30.0% | |
| GACCCAATTTCAAACTATAA+TGG | - | chr6_2:61244675-61244694 | Msa0922550:CDS | 30.0% | |
| !! | AAGTTGCCTTTTTGAAGAAA+GGG | - | chr6_2:61244977-61244996 | Msa0922550:intron | 30.0% |
| ! | GTTGTAGGTATCAAATTTTG+AGG | + | chr6_2:61245033-61245052 | None:intergenic | 30.0% |
| !! | TCAGTACTTTCAAGTTTCAA+TGG | + | chr6_2:61245189-61245208 | None:intergenic | 30.0% |
| TTTGTTCAATTATGCAGAAC+CGG | - | chr6_2:61245227-61245246 | Msa0922550:intron | 30.0% | |
| !!! | GTTTAGCTTTTAAAAGGAAG+TGG | - | chr6_2:61245353-61245372 | Msa0922550:intron | 30.0% |
| ATGATCACATCATGAGAAAT+AGG | - | chr6_2:61245508-61245527 | Msa0922550:intron | 30.0% | |
| ! | AATAGGTAGAAGTGTATGTT+TGG | - | chr6_2:61245525-61245544 | Msa0922550:intron | 30.0% |
| ACAAAATCATGATACTGTCA+TGG | + | chr6_2:61245573-61245592 | None:intergenic | 30.0% | |
| ! | GAGTACATCTGAAATGATTT+GGG | + | chr6_2:61245709-61245728 | None:intergenic | 30.0% |
| ! | TGAGTACATCTGAAATGATT+TGG | + | chr6_2:61245710-61245729 | None:intergenic | 30.0% |
| ATTGTCCAGATGTGTAATTT+AGG | - | chr6_2:61245752-61245771 | Msa0922550:intron | 30.0% | |
| TTTGACCTAAATTACACATC+TGG | + | chr6_2:61245760-61245779 | None:intergenic | 30.0% | |
| !! | TGAAGAATTTTTGTGCCATT+CGG | - | chr6_2:61245780-61245799 | Msa0922550:intron | 30.0% |
| ! | GTTGGAGATTGATATTTTTC+TGG | - | chr6_2:61245973-61245992 | Msa0922550:intron | 30.0% |
| AAGCTCAAGACAGAAAATTA+AGG | + | chr6_2:61246336-61246355 | None:intergenic | 30.0% | |
| ACACCTTTGATCAAAATTGT+CGG | - | chr6_2:61246423-61246442 | Msa0922550:intron | 30.0% | |
| TAACAAATACTGCACATATG+AGG | - | chr6_2:61246575-61246594 | Msa0922550:CDS | 30.0% | |
| TAACAAGGTTAAACATAGAG+AGG | + | chr6_2:61246971-61246990 | None:intergenic | 30.0% | |
| AATATACTACACAGGTTTGT+TGG | - | chr6_2:61246992-61247011 | Msa0922550:intron | 30.0% | |
| ! | ATATACTACACAGGTTTGTT+GGG | - | chr6_2:61246993-61247012 | Msa0922550:intron | 30.0% |
| ! | TTTGTTGGGAAAAATTTGCT+AGG | - | chr6_2:61247007-61247026 | Msa0922550:intron | 30.0% |
| !! | AAAATTTGCTAGGTACTTTG+AGG | - | chr6_2:61247017-61247036 | Msa0922550:intron | 30.0% |
| ACTAAAAAGAATAAGGAGAC+AGG | - | chr6_2:61247198-61247217 | Msa0922550:intron | 30.0% | |
| ! | ACATTGATACTTTTCACCAA+TGG | + | chr6_2:61247312-61247331 | None:intergenic | 30.0% |
| !! | GTGAAAAGTATCAATGTTAG+CGG | - | chr6_2:61247315-61247334 | Msa0922550:intron | 30.0% |
| ATGTGAAAAACAAGATCATC+CGG | + | chr6_2:61247405-61247424 | None:intergenic | 30.0% | |
| GAGAAATTCAATGTGAAAGT+TGG | + | chr6_2:61247450-61247469 | None:intergenic | 30.0% | |
| TTCACATTGAATTTCTCCAA+AGG | - | chr6_2:61247453-61247472 | Msa0922550:intron | 30.0% | |
| GGAAATACAAAGCAACATTA+AGG | + | chr6_2:61247594-61247613 | None:intergenic | 30.0% | |
| !!! | CTGTTATTTTTCTTGCTCTA+AGG | - | chr6_2:61247854-61247873 | Msa0922550:intron | 30.0% |
| ! | AAATGTGATGGAAAATTGCA+TGG | - | chr6_2:61247884-61247903 | Msa0922550:CDS | 30.0% |
| !! | TTCCATTGTTGCTTTATCTA+TGG | - | chr6_2:61248440-61248459 | Msa0922550:five_prime_UTR | 30.0% |
| AAATATGGTTCATAGATGCA+TGG | + | chr6_2:61248483-61248502 | None:intergenic | 30.0% | |
| ACATGAAAAATGTGAGGCAA+TGG | - | chr6_2:61243549-61243568 | Msa0922550:three_prime_UTR | 35.0% | |
| ACTGATCTTTGTGAAGATAG+AGG | + | chr6_2:61243650-61243669 | None:intergenic | 35.0% | |
| !! | GAAGAAATCACCATTTTGGT+TGG | + | chr6_2:61243726-61243745 | None:intergenic | 35.0% |
| AAGAAAGGGAACACTTACTT+AGG | + | chr6_2:61243825-61243844 | None:intergenic | 35.0% | |
| ! | ATCTGATATGCTGCATCTTT+TGG | + | chr6_2:61243945-61243964 | None:intergenic | 35.0% |
| TGATGTTAGATGGAAAACCA+AGG | - | chr6_2:61243979-61243998 | Msa0922550:CDS | 35.0% | |
| TTCATTTGTGACTACTTGGA+TGG | - | chr6_2:61244013-61244032 | Msa0922550:CDS | 35.0% | |
| ATGATAAGCTTATCACACTC+AGG | + | chr6_2:61244041-61244060 | None:intergenic | 35.0% | |
| TGAGTGTGATAAGCTTATCA+TGG | - | chr6_2:61244040-61244059 | Msa0922550:CDS | 35.0% | |
| ! | GATTTTGCAAAAGCTACATC+AGG | + | chr6_2:61244277-61244296 | None:intergenic | 35.0% |
| ! | GATGTAGCTTTTGCAAAATC+AGG | - | chr6_2:61244277-61244296 | Msa0922550:intron | 35.0% |
| CTACTCAAGGACTAAATTGA+TGG | + | chr6_2:61244558-61244577 | None:intergenic | 35.0% | |
| CATCAATTTAGTCCTTGAGT+AGG | - | chr6_2:61244556-61244575 | Msa0922550:CDS | 35.0% | |
| !! | CAAGTTGCCTTTTTGAAGAA+AGG | - | chr6_2:61244976-61244995 | Msa0922550:intron | 35.0% |
| ! | ATCAGATCTTTTGTGTTTGG+TGG | - | chr6_2:61245058-61245077 | Msa0922550:intron | 35.0% |
| ! | TTGGTGGTTGGATGAAAATT+TGG | - | chr6_2:61245074-61245093 | Msa0922550:intron | 35.0% |
| ! | GTGCTATTATATTCACACAC+CGG | + | chr6_2:61245249-61245268 | None:intergenic | 35.0% |
| CATCTATTCAATGCTCCTAT+TGG | - | chr6_2:61245268-61245287 | Msa0922550:intron | 35.0% | |
| !!! | TGGCTGGTTTAGCTTTTAAA+AGG | - | chr6_2:61245347-61245366 | Msa0922550:intron | 35.0% |
| CAGACAAAGAGAAAATCAGA+AGG | - | chr6_2:61245376-61245395 | Msa0922550:intron | 35.0% | |
| ACTATGTTAGGCTTATCGTA+TGG | + | chr6_2:61245406-61245425 | None:intergenic | 35.0% | |
| GATAAGCCTAACATAGTTAC+TGG | - | chr6_2:61245409-61245428 | Msa0922550:intron | 35.0% | |
| TTAGCTCCAGTAACTATGTT+AGG | + | chr6_2:61245418-61245437 | None:intergenic | 35.0% | |
| ! | TAGCTTTTGTCAAAATCGTG+CGG | - | chr6_2:61245608-61245627 | Msa0922550:intron | 35.0% |
| ! | ACATCTGAAATGATTTGGGT+GGG | + | chr6_2:61245705-61245724 | None:intergenic | 35.0% |
| ! | TACATCTGAAATGATTTGGG+TGG | + | chr6_2:61245706-61245725 | None:intergenic | 35.0% |
| TGGAGTTTCTTAGAAATGTG+AGG | - | chr6_2:61245824-61245843 | Msa0922550:intron | 35.0% | |
| GGAGTTTCTTAGAAATGTGA+GGG | - | chr6_2:61245825-61245844 | Msa0922550:intron | 35.0% | |
| GAGTTTCTTAGAAATGTGAG+GGG | - | chr6_2:61245826-61245845 | Msa0922550:intron | 35.0% | |
| TTGTTATGAAATGCAGTAGC+AGG | - | chr6_2:61245882-61245901 | Msa0922550:intron | 35.0% | |
| TTAGTAAGTAAAGCAGTCCT+AGG | - | chr6_2:61246083-61246102 | Msa0922550:intron | 35.0% | |
| TAATGATGTCTAGTGTCCTT+AGG | - | chr6_2:61246106-61246125 | Msa0922550:intron | 35.0% | |
| !! | ATTTTGATCAAAGGTGTGTG+TGG | + | chr6_2:61246420-61246439 | None:intergenic | 35.0% |
| ! | GCACATACACTTTTGATCAA+AGG | + | chr6_2:61246487-61246506 | None:intergenic | 35.0% |
| ! | CAAAAGTGTATGTGCTTCAT+AGG | - | chr6_2:61246492-61246511 | Msa0922550:intron | 35.0% |
| TTAGTGGGATATGTATGTAG+TGG | + | chr6_2:61246532-61246551 | None:intergenic | 35.0% | |
| ! | CGATTGATGTGTCGTATTTT+GGG | - | chr6_2:61246670-61246689 | Msa0922550:CDS | 35.0% |
| ! | GATTGATGTGTCGTATTTTG+GGG | - | chr6_2:61246671-61246690 | Msa0922550:CDS | 35.0% |
| CAAATAAACCAATCCAAGCA+GGG | + | chr6_2:61246711-61246730 | None:intergenic | 35.0% | |
| TCAAATAAACCAATCCAAGC+AGG | + | chr6_2:61246712-61246731 | None:intergenic | 35.0% | |
| GAGCTTACGAAAACAACTTA+TGG | - | chr6_2:61246772-61246791 | Msa0922550:intron | 35.0% | |
| GTTAAACATAGAGAGGTCTA+AGG | + | chr6_2:61246964-61246983 | None:intergenic | 35.0% | |
| TCCATTGAAAGCTGTTGAAA+TGG | - | chr6_2:61247086-61247105 | Msa0922550:intron | 35.0% | |
| ACCATTTCAACAGCTTTCAA+TGG | + | chr6_2:61247090-61247109 | None:intergenic | 35.0% | |
| AAAAGAATAAGGAGACAGGA+TGG | - | chr6_2:61247202-61247221 | Msa0922550:intron | 35.0% | |
| AAAGAATAAGGAGACAGGAT+GGG | - | chr6_2:61247203-61247222 | Msa0922550:intron | 35.0% | |
| ! | TACTTTTCACCAATGGCAAA+CGG | + | chr6_2:61247305-61247324 | None:intergenic | 35.0% |
| TACTACCAATTTATACGGCT+TGG | - | chr6_2:61247645-61247664 | Msa0922550:intron | 35.0% | |
| TCAAGCACATACTTGAGATT+CGG | + | chr6_2:61247701-61247720 | None:intergenic | 35.0% | |
| TAAGGGCTACAAAAATGTGA+TGG | - | chr6_2:61247872-61247891 | Msa0922550:intron | 35.0% | |
| ! | AACACAAGAATTCTGAAGGA+AGG | - | chr6_2:61247909-61247928 | Msa0922550:CDS | 35.0% |
| AAGGAAGGAATTGAGAAAAC+AGG | - | chr6_2:61247924-61247943 | Msa0922550:CDS | 35.0% | |
| AAGGAATTGAGAAAACAGGA+AGG | - | chr6_2:61247928-61247947 | Msa0922550:CDS | 35.0% | |
| AAAATTGTCTCCAAGGACAT+AGG | - | chr6_2:61247954-61247973 | Msa0922550:CDS | 35.0% | |
| AAAATACGGATGGATAGTTC+CGG | - | chr6_2:61248049-61248068 | Msa0922550:CDS | 35.0% | |
| AGAAAAAGTTGTGAGTCTCT+TGG | - | chr6_2:61248172-61248191 | Msa0922550:CDS | 35.0% | |
| TTCAAAAGATGCTCATGTTG+CGG | - | chr6_2:61248217-61248236 | Msa0922550:CDS | 35.0% | |
| GCATACATTTGATGTGTGTA+AGG | - | chr6_2:61248413-61248432 | Msa0922550:five_prime_UTR | 35.0% | |
| CTCCATAGATAAAGCAACAA+TGG | + | chr6_2:61248445-61248464 | None:intergenic | 35.0% | |
| CAGAACTCATCCAACCAAAA+TGG | - | chr6_2:61243713-61243732 | Msa0922550:CDS | 40.0% | |
| !! | ATGGTCTCGTTTTGTTCATC+TGG | + | chr6_2:61243762-61243781 | None:intergenic | 40.0% |
| ! | AGAAGCAAAAGTGCATGCTA+TGG | + | chr6_2:61243781-61243800 | None:intergenic | 40.0% |
| TGGAAAACCAAGGCTTAACT+TGG | - | chr6_2:61243989-61244008 | Msa0922550:CDS | 40.0% | |
| AATGAAGCCAAGTTAAGCCT+TGG | + | chr6_2:61243999-61244018 | None:intergenic | 40.0% | |
| TGGCTTCATTTGTGACTACT+TGG | - | chr6_2:61244009-61244028 | Msa0922550:CDS | 40.0% | |
| TAAACATACCTGAAGCTCAG+TGG | + | chr6_2:61244111-61244130 | None:intergenic | 40.0% | |
| !! | TAGCTTTGTCAGAATCAGTC+TGG | + | chr6_2:61244308-61244327 | None:intergenic | 40.0% |
| ATCAATTTGGTCCCTACTCA+AGG | + | chr6_2:61244571-61244590 | None:intergenic | 40.0% | |
| TTGAGTAGGGACCAAATTGA+TGG | - | chr6_2:61244570-61244589 | Msa0922550:CDS | 40.0% | |
| ! | AGTTTGAAATTGGGTCTCTG+CGG | + | chr6_2:61244671-61244690 | None:intergenic | 40.0% |
| TAATGGTGTAGCCCAAATTG+TGG | - | chr6_2:61244692-61244711 | Msa0922550:CDS | 40.0% | |
| AAAGTCTGCAGCCACAATTT+GGG | + | chr6_2:61244706-61244725 | None:intergenic | 40.0% | |
| AAAAGTCTGCAGCCACAATT+TGG | + | chr6_2:61244707-61244726 | None:intergenic | 40.0% | |
| !! | GATCTTTTGTGTTTGGTGGT+TGG | - | chr6_2:61245062-61245081 | Msa0922550:intron | 40.0% |
| CAATGCTCCTATTGGTGAAA+AGG | - | chr6_2:61245276-61245295 | Msa0922550:intron | 40.0% | |
| ! | GCAGTTTCCTTTTCACCAAT+AGG | + | chr6_2:61245286-61245305 | None:intergenic | 40.0% |
| GTCATCAGAGGCAATAATGT+TGG | - | chr6_2:61245327-61245346 | Msa0922550:intron | 40.0% | |
| AATTCCTCCCAATGCATGTT+TGG | + | chr6_2:61245673-61245692 | None:intergenic | 40.0% | |
| ! | ATCTGAAATGATTTGGGTGG+GGG | + | chr6_2:61245703-61245722 | None:intergenic | 40.0% |
| ! | CATCTGAAATGATTTGGGTG+GGG | + | chr6_2:61245704-61245723 | None:intergenic | 40.0% |
| !!! | AAGCACTTGTTTTAGGCCTT+CGG | - | chr6_2:61245929-61245948 | Msa0922550:intron | 40.0% |
| GACACTAGACATCATTACCT+AGG | + | chr6_2:61246103-61246122 | None:intergenic | 40.0% | |
| ! | TAGTCTTACAAGCAAGCTTG+TGG | - | chr6_2:61246176-61246195 | Msa0922550:intron | 40.0% |
| !!! | CAGTGTGTTAGCTTTTGCAA+AGG | + | chr6_2:61246372-61246391 | None:intergenic | 40.0% |
| CTTTGCAAAAGCTAACACAC+TGG | - | chr6_2:61246370-61246389 | Msa0922550:intron | 40.0% | |
| CTAACACACTGGACACAAAA+TGG | - | chr6_2:61246381-61246400 | Msa0922550:intron | 40.0% | |
| !! | GCACCGACAATTTTGATCAA+AGG | + | chr6_2:61246429-61246448 | None:intergenic | 40.0% |
| !! | ATGTAGTGGATGAGTGTAGT+AGG | + | chr6_2:61246518-61246537 | None:intergenic | 40.0% |
| !! | GTGAACAAAGCTTTGAGACA+GGG | + | chr6_2:61246601-61246620 | None:intergenic | 40.0% |
| !! | AGTGAACAAAGCTTTGAGAC+AGG | + | chr6_2:61246602-61246621 | None:intergenic | 40.0% |
| !! | TCAAAGCTTTGTTCACTCTC+AGG | - | chr6_2:61246605-61246624 | Msa0922550:CDS | 40.0% |
| !! | CAAAGCTTTGTTCACTCTCA+GGG | - | chr6_2:61246606-61246625 | Msa0922550:CDS | 40.0% |
| !! | AAAGCTTTGTTCACTCTCAG+GGG | - | chr6_2:61246607-61246626 | Msa0922550:CDS | 40.0% |
| ! | GCGATTGATGTGTCGTATTT+TGG | - | chr6_2:61246669-61246688 | Msa0922550:CDS | 40.0% |
| TAGACACCTGTGAAACTGTT+TGG | - | chr6_2:61246747-61246766 | Msa0922550:intron | 40.0% | |
| AGACACCTGTGAAACTGTTT+GGG | - | chr6_2:61246748-61246767 | Msa0922550:intron | 40.0% | |
| AAGCTATCATGGTGAACTTG+TGG | + | chr6_2:61246811-61246830 | None:intergenic | 40.0% | |
| !! | GTACTTTGAGGTTGAGCTAA+AGG | - | chr6_2:61247029-61247048 | Msa0922550:intron | 40.0% |
| AAAGGAAGTGAAACTCACAG+AGG | - | chr6_2:61247047-61247066 | Msa0922550:intron | 40.0% | |
| CACAGAGGATTACTATGTGA+TGG | - | chr6_2:61247062-61247081 | Msa0922550:intron | 40.0% | |
| !! | ATCTGTGTTGCAGCCATTTT+GGG | - | chr6_2:61247123-61247142 | Msa0922550:intron | 40.0% |
| AGAAGATCAGGGTAGAGAAA+CGG | + | chr6_2:61247273-61247292 | None:intergenic | 40.0% | |
| TTCTCTACCCTGATCTTCTA+TGG | - | chr6_2:61247274-61247293 | Msa0922550:intron | 40.0% | |
| TCTCTACCCTGATCTTCTAT+GGG | - | chr6_2:61247275-61247294 | Msa0922550:intron | 40.0% | |
| GGAAATCCCATAGAAGATCA+GGG | + | chr6_2:61247284-61247303 | None:intergenic | 40.0% | |
| AATGTTAGCGGTCACAAGTA+CGG | - | chr6_2:61247327-61247346 | Msa0922550:intron | 40.0% | |
| !! | TTGTTTACCCTGGTATTGGT+TGG | - | chr6_2:61247352-61247371 | Msa0922550:intron | 40.0% |
| !! | TGTTTACCCTGGTATTGGTT+GGG | - | chr6_2:61247353-61247372 | Msa0922550:intron | 40.0% |
| AAACAACCCAACCAATACCA+GGG | + | chr6_2:61247362-61247381 | None:intergenic | 40.0% | |
| TGCTTTGTATTTCCTTCGAC+AGG | - | chr6_2:61247600-61247619 | Msa0922550:intron | 40.0% | |
| GCAGACCATCTGAGAAAATA+CGG | - | chr6_2:61248035-61248054 | Msa0922550:CDS | 40.0% | |
| ACCATCTGAGAAAATACGGA+TGG | - | chr6_2:61248039-61248058 | Msa0922550:CDS | 40.0% | |
| ! | TCCATCCGTATTTTCTCAGA+TGG | + | chr6_2:61248043-61248062 | None:intergenic | 40.0% |
| AATCTTCCCTAATCACCACT+CGG | + | chr6_2:61248115-61248134 | None:intergenic | 40.0% | |
| AAGCTGAGATTCTTAGGCAT+TGG | - | chr6_2:61248291-61248310 | Msa0922550:five_prime_UTR | 40.0% | |
| !! | CATTGGAAGAAGCTTGTTGA+TGG | - | chr6_2:61248308-61248327 | Msa0922550:five_prime_UTR | 40.0% |
| AAACCCTTGATTGTTGTGAG+TGG | - | chr6_2:61248378-61248397 | Msa0922550:five_prime_UTR | 40.0% | |
| AAGCCACTCACAACAATCAA+GGG | + | chr6_2:61248384-61248403 | None:intergenic | 40.0% | |
| AAAGCCACTCACAACAATCA+AGG | + | chr6_2:61248385-61248404 | None:intergenic | 40.0% | |
| GTTCATAGATGCATGGACAT+TGG | + | chr6_2:61248476-61248495 | None:intergenic | 40.0% | |
| TTCTAGATACGTGCGTGAAC+AGG | - | chr6_2:61243797-61243816 | Msa0922550:CDS | 45.0% | |
| GTATTGTGATGCAGTCGTAG+AGG | + | chr6_2:61244643-61244662 | None:intergenic | 45.0% | |
| GGTGAAAAGGAAACTGCAGT+AGG | - | chr6_2:61245289-61245308 | Msa0922550:intron | 45.0% | |
| AAGGAAACTGCAGTAGGAGT+TGG | - | chr6_2:61245295-61245314 | Msa0922550:intron | 45.0% | |
| CAGTAGGAGTTGGAACTGTA+GGG | - | chr6_2:61245305-61245324 | Msa0922550:intron | 45.0% | |
| TCAGAGGCAATAATGTTGGC+TGG | - | chr6_2:61245331-61245350 | Msa0922550:intron | 45.0% | |
| AGTTACTGGAGCTAATGTGC+AGG | - | chr6_2:61245423-61245442 | Msa0922550:intron | 45.0% | |
| TCTCGAAGCATACATCCGAA+TGG | + | chr6_2:61245798-61245817 | None:intergenic | 45.0% | |
| TGTATGCTTCGAGAGTCATG+TGG | - | chr6_2:61245804-61245823 | Msa0922550:intron | 45.0% | |
| !! | GCCAGACAAGCACTTGTTTT+AGG | - | chr6_2:61245922-61245941 | Msa0922550:intron | 45.0% |
| GCCTAAAACAAGTGCTTGTC+TGG | + | chr6_2:61245926-61245945 | None:intergenic | 45.0% | |
| ATGAAGCATGGACACTGTGT+TGG | - | chr6_2:61245955-61245974 | Msa0922550:intron | 45.0% | |
| GCACTAGTCATCATCACCTA+AGG | + | chr6_2:61246125-61246144 | None:intergenic | 45.0% | |
| TTACAAGCAAGCTTGTGGCT+TGG | - | chr6_2:61246181-61246200 | Msa0922550:intron | 45.0% | |
| GGACACAAAATGGACGATGT+CGG | - | chr6_2:61246391-61246410 | Msa0922550:intron | 45.0% | |
| !! | CTTTTGATCAAAGGCGTGTG+TGG | + | chr6_2:61246478-61246497 | None:intergenic | 45.0% |
| CAAGCAGGGCTTAAAGGAAA+AGG | + | chr6_2:61246697-61246716 | None:intergenic | 45.0% | |
| ! | CTTTTCCTTTAAGCCCTGCT+TGG | - | chr6_2:61246695-61246714 | Msa0922550:CDS | 45.0% |
| GAGAGGTCTAAGGATCTGTT+TGG | + | chr6_2:61246954-61246973 | None:intergenic | 45.0% | |
| CAAAATGGCTGCAACACAGA+TGG | + | chr6_2:61247124-61247143 | None:intergenic | 45.0% | |
| ! | CATCTGTGTTGCAGCCATTT+TGG | - | chr6_2:61247122-61247141 | Msa0922550:intron | 45.0% |
| ! | AGTCAGCGTTGAACCCAAAA+TGG | + | chr6_2:61247139-61247158 | None:intergenic | 45.0% |
| !!! | ATTTTGGGTTCAACGCTGAC+TGG | - | chr6_2:61247138-61247157 | Msa0922550:intron | 45.0% |
| CTCGCAGCATCTACATGAAT+TGG | + | chr6_2:61247234-61247253 | None:intergenic | 45.0% | |
| ATTCATGTAGATGCTGCGAG+TGG | - | chr6_2:61247234-61247253 | Msa0922550:intron | 45.0% | |
| CGGAAATCCCATAGAAGATC+AGG | + | chr6_2:61247285-61247304 | None:intergenic | 45.0% | |
| ATGGGATTTCCGTTTGCCAT+TGG | - | chr6_2:61247293-61247312 | Msa0922550:intron | 45.0% | |
| !! | AAGTACGGTCTTGTTTACCC+TGG | - | chr6_2:61247342-61247361 | Msa0922550:intron | 45.0% |
| !! | GGTCTTGTTTACCCTGGTAT+TGG | - | chr6_2:61247348-61247367 | Msa0922550:intron | 45.0% |
| CAAACAACCCAACCAATACC+AGG | + | chr6_2:61247363-61247382 | None:intergenic | 45.0% | |
| !! | CTGGTATTGGTTGGGTTGTT+TGG | - | chr6_2:61247361-61247380 | Msa0922550:intron | 45.0% |
| !! | GTATTGGTTGGGTTGTTTGG+AGG | - | chr6_2:61247364-61247383 | Msa0922550:intron | 45.0% |
| ! | ATTTGACTCGATCCTGTCGA+AGG | + | chr6_2:61247615-61247634 | None:intergenic | 45.0% |
| CGAAGCCAAGCCGTATAAAT+TGG | + | chr6_2:61247653-61247672 | None:intergenic | 45.0% | |
| ! | ATTTATACGGCTTGGCTTCG+AGG | - | chr6_2:61247653-61247672 | Msa0922550:intron | 45.0% |
| GGCGAACACAAGAATTCTGA+AGG | - | chr6_2:61247905-61247924 | Msa0922550:CDS | 45.0% | |
| TTCAGAGAGAAGGCAACAAG+TGG | + | chr6_2:61247984-61248003 | None:intergenic | 45.0% | |
| GCTACTGTCTTTCAGAGAGA+AGG | + | chr6_2:61247994-61248013 | None:intergenic | 45.0% | |
| GGAAGATTTCAGCTGTAGCT+TGG | - | chr6_2:61248127-61248146 | Msa0922550:intron | 45.0% | |
| GGACTCAAGCTGAGATTCTT+AGG | - | chr6_2:61248285-61248304 | Msa0922550:five_prime_UTR | 45.0% | |
| !! | CTTGTTGATGGCAAGAGAGT+TGG | - | chr6_2:61248320-61248339 | Msa0922550:five_prime_UTR | 45.0% |
| CCTATCTGCTATCGCAACCA+CGG | + | chr6_2:61244166-61244185 | None:intergenic | 50.0% | |
| GCAGTAGGAGTTGGAACTGT+AGG | - | chr6_2:61245304-61245323 | Msa0922550:intron | 50.0% | |
| TGGAACTGTAGGGTCATCAG+AGG | - | chr6_2:61245315-61245334 | Msa0922550:intron | 50.0% | |
| !! | CCAATGCATGTTTGGCTTGG+CGG | + | chr6_2:61245665-61245684 | None:intergenic | 50.0% |
| CGCCAAGCCAAACATGCATT+GGG | - | chr6_2:61245663-61245682 | Msa0922550:intron | 50.0% | |
| CTCCCAATGCATGTTTGGCT+TGG | + | chr6_2:61245668-61245687 | None:intergenic | 50.0% | |
| CAAGCCAAACATGCATTGGG+AGG | - | chr6_2:61245666-61245685 | Msa0922550:intron | 50.0% | |
| ! | TGAAATGATTTGGGTGGGGG+TGG | + | chr6_2:61245700-61245719 | None:intergenic | 50.0% |
| !! | TCTGGCCTTACCTTTGGTTC+GGG | + | chr6_2:61245908-61245927 | None:intergenic | 50.0% |
| !! | GTCTGGCCTTACCTTTGGTT+CGG | + | chr6_2:61245909-61245928 | None:intergenic | 50.0% |
| !! | TGCTTGTCTGGCCTTACCTT+TGG | + | chr6_2:61245914-61245933 | None:intergenic | 50.0% |
| GTCCATGCTTCATAAGCCGA+AGG | + | chr6_2:61245948-61245967 | None:intergenic | 50.0% | |
| CCAATCCAAGCAGGGCTTAA+AGG | + | chr6_2:61246703-61246722 | None:intergenic | 50.0% | |
| CCTTTAAGCCCTGCTTGGAT+TGG | - | chr6_2:61246700-61246719 | Msa0922550:CDS | 50.0% | |
| GCTCTCCCAAACAGTTTCAC+AGG | + | chr6_2:61246756-61246775 | None:intergenic | 50.0% | |
| ATGGTGAACTTGTGGACTCG+TGG | + | chr6_2:61246803-61246822 | None:intergenic | 50.0% | |
| ! | AACGCTGACTGGAGAGTTTG+AGG | - | chr6_2:61247149-61247168 | Msa0922550:intron | 50.0% |
| !! | GAGGCATAAAGCTGACTTGC+CGG | - | chr6_2:61247383-61247402 | Msa0922550:intron | 50.0% |
| AAGTGGCACACCTATGTCCT+TGG | + | chr6_2:61247967-61247986 | None:intergenic | 50.0% | |
| TATCGCGAGTGAGACAAGTG+AGG | - | chr6_2:61248241-61248260 | Msa0922550:CDS | 50.0% | |
| CAAGAGAGTTGGAGCATGCT+AGG | - | chr6_2:61248331-61248350 | Msa0922550:five_prime_UTR | 50.0% | |
| TCCTGTCACCACTGAGCTTC+AGG | - | chr6_2:61244100-61244119 | Msa0922550:CDS | 55.0% | |
| ACCTGAAGCTCAGTGGTGAC+AGG | + | chr6_2:61244104-61244123 | None:intergenic | 55.0% | |
| CCGTGGTTGCGATAGCAGAT+AGG | - | chr6_2:61244163-61244182 | Msa0922550:intron | 55.0% | |
| !! | ATGTTTGGCTTGGCGGTGAC+TGG | + | chr6_2:61245658-61245677 | None:intergenic | 55.0% |
| CCGCCAAGCCAAACATGCAT+TGG | - | chr6_2:61245662-61245681 | Msa0922550:intron | 55.0% | |
| GGCCTTCGGCTTATGAAGCA+TGG | - | chr6_2:61245943-61245962 | Msa0922550:intron | 55.0% | |
| CATGTAGATGCTGCGAGTGG+AGG | - | chr6_2:61247237-61247256 | Msa0922550:intron | 55.0% | |
| TCTGCTGGCATTGTGTAGGC+CGG | + | chr6_2:61248071-61248090 | None:intergenic | 55.0% | |
| TGCGTCTGCTGGCATTGTGT+AGG | + | chr6_2:61248075-61248094 | None:intergenic | 55.0% | |
| ! | GCGATGTGTTTTGCGTCTGC+TGG | + | chr6_2:61248086-61248105 | None:intergenic | 55.0% |
| CCTAATCACCACTCGGAGGA+CGG | + | chr6_2:61248108-61248127 | None:intergenic | 55.0% | |
| CGTCCTCCGAGTGGTGATTA+GGG | - | chr6_2:61248106-61248125 | Msa0922550:intron | 55.0% | |
| CTTCCCTAATCACCACTCGG+AGG | + | chr6_2:61248112-61248131 | None:intergenic | 55.0% | |
| CAGTAGCAGGCCCGAACCAA+AGG | - | chr6_2:61245895-61245914 | Msa0922550:intron | 60.0% | |
| GCAGGCCCGAACCAAAGGTA+AGG | - | chr6_2:61245900-61245919 | Msa0922550:intron | 60.0% | |
| CCGTCCTCCGAGTGGTGATT+AGG | - | chr6_2:61248105-61248124 | Msa0922550:intron | 60.0% | |
| ACACATCGCCGTCCTCCGAG+TGG | - | chr6_2:61248097-61248116 | Msa0922550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 61243453 | 61248542 | 61243453 | ID=Msa0922550;Name=Msa0922550 |
| chr6_2 | mRNA | 61243453 | 61248542 | 61243453 | ID=Msa0922550-mRNA-1;Parent=Msa0922550;Name=Msa0922550-mRNA-1;_AED=0.31;_eAED=0.31;_QI=279|1|1|1|1|1|6|190|499 |
| chr6_2 | exon | 61243453 | 61244119 | 61243453 | ID=Msa0922550-mRNA-1:exon:9486;Parent=Msa0922550-mRNA-1 |
| chr6_2 | exon | 61244321 | 61244373 | 61244321 | ID=Msa0922550-mRNA-1:exon:9485;Parent=Msa0922550-mRNA-1 |
| chr6_2 | exon | 61244521 | 61244989 | 61244521 | ID=Msa0922550-mRNA-1:exon:9484;Parent=Msa0922550-mRNA-1 |
| chr6_2 | exon | 61246551 | 61246751 | 61246551 | ID=Msa0922550-mRNA-1:exon:9483;Parent=Msa0922550-mRNA-1 |
| chr6_2 | exon | 61247874 | 61248078 | 61247874 | ID=Msa0922550-mRNA-1:exon:9482;Parent=Msa0922550-mRNA-1 |
| chr6_2 | exon | 61248169 | 61248542 | 61248169 | ID=Msa0922550-mRNA-1:exon:9481;Parent=Msa0922550-mRNA-1 |
| chr6_2 | five_prime_UTR | 61248264 | 61248542 | 61248264 | ID=Msa0922550-mRNA-1:five_prime_utr;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61248169 | 61248263 | 61248169 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61247874 | 61248078 | 61247874 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61246551 | 61246751 | 61246551 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61244521 | 61244989 | 61244521 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61244321 | 61244373 | 61244321 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | CDS | 61243643 | 61244119 | 61243643 | ID=Msa0922550-mRNA-1:cds;Parent=Msa0922550-mRNA-1 |
| chr6_2 | three_prime_UTR | 61243453 | 61243642 | 61243453 | ID=Msa0922550-mRNA-1:three_prime_utr;Parent=Msa0922550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
