AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1252730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252730 MtrunA17_Chr8g0369031 89.837 246 19 2 1 246 1 240 9.12e-127 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252730 AT5G44650.1 64.968 157 54 1 94 250 104 259 1.70e-67 213

Find 76 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTTTCCCTGTTATTAT+AGG 0.272827 8_2:-49814978 Msa1252730:CDS
GAAATTGAAGGAAGTGTTAA+TGG 0.309366 8_2:+49821018 None:intergenic
ACAGAAATACCTATAATAAC+AGG 0.315661 8_2:+49814969 None:intergenic
TTCAACCATACCTCTAAATT+AGG 0.317527 8_2:+49818038 None:intergenic
TAACTAGGTCGTCTCTTGTT+GGG 0.347526 8_2:+49818732 None:intergenic
TCTGGGATCCTCAATCATTA+TGG 0.357646 8_2:+49818799 None:intergenic
CCTTGTAGTGTGCTCCTCTT+AGG 0.361077 8_2:-49814763 Msa1252730:three_prime_UTR
GTTAAAGAAAGAAAGATGAT+AGG 0.367891 8_2:-49821101 Msa1252730:five_prime_UTR
TCACTCCCAGTTCTATTGTT+GGG 0.382297 8_2:-49815744 Msa1252730:CDS
AAAACAGGGACATGTTGTTT+GGG 0.385929 8_2:-49820640 Msa1252730:CDS
TGCTCCTCTTAGGATGTGTT+TGG 0.391876 8_2:-49814753 Msa1252730:three_prime_UTR
TTCACTCCCAGTTCTATTGT+TGG 0.398851 8_2:-49815745 Msa1252730:CDS
CGTCCAAGATCCAGGCTCAT+TGG 0.399052 8_2:-49815711 Msa1252730:CDS
TCATTTCCTCAGCAAGCATC+TGG 0.399823 8_2:+49818069 None:intergenic
TGGAGAACAGCTCTATCCTT+TGG 0.408900 8_2:+49818089 None:intergenic
GACCGCATGGCCTAATTTAG+AGG 0.414053 8_2:-49818048 Msa1252730:intron
AAAATGTTGCTGAAATCAAA+AGG 0.421552 8_2:-49820756 Msa1252730:CDS
AGACGACCTAGTTACTGCTT+TGG 0.421764 8_2:-49818723 Msa1252730:CDS
GGCCCAATGAGCCTGGATCT+TGG 0.424720 8_2:+49815708 None:intergenic
AGGCAGCCCAACAATAGAAC+TGG 0.425600 8_2:+49815738 None:intergenic
CAAAGAGACTAAACATTGAC+TGG 0.428498 8_2:-49816379 Msa1252730:CDS
GCCTGCATCGTCCAAGATCC+AGG 0.431626 8_2:-49815719 Msa1252730:CDS
GTAACTAGGTCGTCTCTTGT+TGG 0.444226 8_2:+49818731 None:intergenic
CTTCTTCCAAAGCAGTAACT+AGG 0.447551 8_2:+49818717 None:intergenic
AGGGAACGAATGAAAGAATT+CGG 0.467403 8_2:+49820899 None:intergenic
ATACCTAGGCCCAATGAGCC+TGG 0.473380 8_2:+49815701 None:intergenic
AGTGCCATACCAGTTCCTAC+TGG 0.473464 8_2:+49814919 None:intergenic
AGTCTCTTTGCAGCCACTTG+AGG 0.476299 8_2:+49816392 None:intergenic
CAACTCCCTCCAGTAGGAAC+TGG 0.478013 8_2:-49814928 Msa1252730:CDS
GTCCAAGATCCAGGCTCATT+GGG 0.492999 8_2:-49815710 Msa1252730:CDS
TGAAAATGAAGATGCTGACT+TGG 0.499046 8_2:-49820872 Msa1252730:CDS
CCTCTTAGGATGTGTTTGGA+TGG 0.500099 8_2:-49814749 None:intergenic
TGAGAACAGCGAAAGGTTGA+AGG 0.503708 8_2:+49820973 None:intergenic
CCATCCAAACACATCCTAAG+AGG 0.508151 8_2:+49814749 None:intergenic
GCCTGGATCTTGGACGATGC+AGG 0.511782 8_2:+49815718 None:intergenic
TGGCATTTACTAGGTGAATG+AGG 0.513830 8_2:-49818120 Msa1252730:intron
AAACAACCCTGGATGATGTC+AGG 0.515990 8_2:+49814840 None:intergenic
ATGTTCACCTGACATCATCC+AGG 0.520566 8_2:-49814847 Msa1252730:three_prime_UTR
GGCATTTACTAGGTGAATGA+GGG 0.523119 8_2:-49818119 Msa1252730:intron
AACAGAAGTGCCTTCAGCAT+TGG 0.528354 8_2:-49816315 Msa1252730:intron
TATCTTAAACCAGTCTCAGA+AGG 0.528914 8_2:-49815795 Msa1252730:intron
AAAACTAACCATAATGATTG+AGG 0.531755 8_2:-49818807 Msa1252730:CDS
GATCCAGGCTCATTGGGCCT+AGG 0.536167 8_2:-49815704 Msa1252730:intron
AACTAGGTCGTCTCTTGTTG+GGG 0.554479 8_2:+49818733 None:intergenic
CCCTCCAGTAGGAACTGGTA+TGG 0.555617 8_2:-49814923 Msa1252730:CDS
CCTAAGAGGAGCACACTACA+AGG 0.559885 8_2:+49814763 None:intergenic
TGAAAGAATTCGGCGATGAG+TGG 0.563266 8_2:+49820909 None:intergenic
AAATGTTGCTGAAATCAAAA+GGG 0.563854 8_2:-49820755 Msa1252730:intron
CTTGGTGAATTGTGTTCCGT+TGG 0.565502 8_2:+49820939 None:intergenic
ATCATCAAGTTGCTGTGTAG+AGG 0.573554 8_2:+49820843 None:intergenic
GATTGTGAAGATGAAATTGA+AGG 0.574175 8_2:+49821006 None:intergenic
CACTGGAATCGATCCTCAAG+TGG 0.582729 8_2:-49816405 Msa1252730:CDS
GAAGGAAGTGTTAATGGCAA+CGG 0.582871 8_2:+49821024 None:intergenic
ATCTTAAACCAGTCTCAGAA+GGG 0.584966 8_2:-49815794 Msa1252730:intron
GCGATGAGTGGTGCTAAGCT+TGG 0.592274 8_2:+49820921 None:intergenic
AGGATCGATTCCAGTGTCAG+TGG 0.595249 8_2:+49816412 None:intergenic
GCCATACCAGTTCCTACTGG+AGG 0.602146 8_2:+49814922 None:intergenic
TCTCACTCTCTCTTTACCAA+CGG 0.610252 8_2:-49820955 Msa1252730:CDS
CAGGGACATGTTGTTTGGGG+AGG 0.610718 8_2:-49820636 Msa1252730:intron
GAAAATGAAGATGCTGACTT+GGG 0.613265 8_2:-49820871 Msa1252730:CDS
GGCAGCCCAACAATAGAACT+GGG 0.616379 8_2:+49815739 None:intergenic
GAGAGAGTGAGAACAGCGAA+AGG 0.620164 8_2:+49820966 None:intergenic
AAACAGGGACATGTTGTTTG+GGG 0.623345 8_2:-49820639 Msa1252730:CDS
GAGTCGTTTAGCAATGGCAG+TGG 0.626055 8_2:-49821061 Msa1252730:exon
CAGAAATACCTATAATAACA+GGG 0.629810 8_2:+49814970 None:intergenic
AGCTACGAGTCGTTTAGCAA+TGG 0.630475 8_2:-49821067 Msa1252730:exon
CGAACTAGCTCAAACAACCC+TGG 0.638471 8_2:+49814829 None:intergenic
CCATACCAGTTCCTACTGGA+GGG 0.641464 8_2:+49814923 None:intergenic
GCATTTACTAGGTGAATGAG+GGG 0.641930 8_2:-49818118 Msa1252730:intron
GAATGAGGGGAAAATTCCAA+AGG 0.648884 8_2:-49818105 Msa1252730:CDS
TGTTCACCTGACATCATCCA+GGG 0.655898 8_2:-49814846 Msa1252730:three_prime_UTR
TTGCTGAGGAAATGACCGCA+TGG 0.657890 8_2:-49818061 Msa1252730:CDS
AAGGAACTGACCAATGCTGA+AGG 0.663019 8_2:+49816305 None:intergenic
TGTTCTCCAGATGCTTGCTG+AGG 0.668817 8_2:-49818075 Msa1252730:CDS
AAAGAGACTAAACATTGACT+GGG 0.671069 8_2:-49816378 Msa1252730:CDS
TACCTCTAAATTAGGCCATG+CGG 0.696225 8_2:+49818046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATTTTTTTTTCATAAA+AGG + chr8_2:49815678-49815697 None:intergenic 10.0%
!!! ACTTCTTATATTTATTTTAT+GGG - chr8_2:49818776-49818795 Msa1252730:CDS 10.0%
!!! GTAATTTTATATTATAATCA+AGG - chr8_2:49819672-49819691 Msa1252730:intron 10.0%
!! AGAAAATTGGATAAATTATT+AGG + chr8_2:49815282-49815301 None:intergenic 15.0%
!!! TTTTTTCAATTAAGATTACA+AGG - chr8_2:49815476-49815495 Msa1252730:intron 15.0%
!!! TTTTTCAATTAAGATTACAA+GGG - chr8_2:49815477-49815496 Msa1252730:intron 15.0%
!! TTCTACATAAGAATTATTAA+TGG + chr8_2:49815749-49815768 None:intergenic 15.0%
!! AAACTATTAAAAAGATTTAG+AGG + chr8_2:49816045-49816064 None:intergenic 15.0%
!!! TTTAAAATAGTATAATTCGA+AGG - chr8_2:49816875-49816894 Msa1252730:intron 15.0%
!!! AGTTTATTTAAAATCTTGTT+TGG - chr8_2:49817260-49817279 Msa1252730:intron 15.0%
!!! GTTTATTTAAAATCTTGTTT+GGG - chr8_2:49817261-49817280 Msa1252730:intron 15.0%
!! AACATCTAAAAAAAATTGTT+TGG + chr8_2:49818055-49818074 None:intergenic 15.0%
!!! GACTTCTTATATTTATTTTA+TGG - chr8_2:49818775-49818794 Msa1252730:CDS 15.0%
!!! TCAACAATTAAATTGTATTT+TGG - chr8_2:49819080-49819099 Msa1252730:intron 15.0%
!! AATATAAAATTACAGTATCA+TGG + chr8_2:49819665-49819684 None:intergenic 15.0%
!! TGATTATATTAAAAATGTAC+AGG + chr8_2:49819753-49819772 None:intergenic 15.0%
!!! TATAGTTTTTTTAGTTTTTG+TGG - chr8_2:49820797-49820816 Msa1252730:CDS 15.0%
!!! ATAGTTTTTTTAGTTTTTGT+GGG - chr8_2:49820798-49820817 Msa1252730:CDS 15.0%
!!! ATTTATTTTTCATAAGATCT+TGG + chr8_2:49821076-49821095 None:intergenic 15.0%
!! TCTTATGAAAAATAAATACT+AGG - chr8_2:49821079-49821098 Msa1252730:five_prime_UTR 15.0%
!!! CTTTTTAATAGTTTTGTCTA+TGG - chr8_2:49816051-49816070 Msa1252730:intron 20.0%
!! AATTCAATTGCTAAAGATAA+TGG + chr8_2:49816087-49816106 None:intergenic 20.0%
!! TGTTGAGGATATATTATTAT+TGG + chr8_2:49816678-49816697 None:intergenic 20.0%
!! CGGTAATAATAAATAACAAT+AGG + chr8_2:49816802-49816821 None:intergenic 20.0%
!!! TTTTGTATGTTTGTAATTTG+CGG + chr8_2:49816822-49816841 None:intergenic 20.0%
!! TGTTATTGAAGTTGTAATTA+TGG - chr8_2:49816933-49816952 Msa1252730:intron 20.0%
!! AAGCATAATTTAGATAATCA+GGG + chr8_2:49817194-49817213 None:intergenic 20.0%
!! AAAGCATAATTTAGATAATC+AGG + chr8_2:49817195-49817214 None:intergenic 20.0%
!!! TTTTTAGATGTTCAAAATCA+TGG - chr8_2:49818063-49818082 Msa1252730:CDS 20.0%
!! ACAGTTAAATGAATATAACA+AGG + chr8_2:49818125-49818144 None:intergenic 20.0%
!! GTTAACATTATTCAAATATG+TGG + chr8_2:49818165-49818184 None:intergenic 20.0%
!! ACTACATAAATATTGAAGTT+TGG - chr8_2:49818320-49818339 Msa1252730:intron 20.0%
!! CTACATAAATATTGAAGTTT+GGG - chr8_2:49818321-49818340 Msa1252730:intron 20.0%
!! AGAAGTGAGAAAAAAAAAAA+AGG + chr8_2:49818472-49818491 None:intergenic 20.0%
!! CAAATTAAATTCATTTCTTC+AGG - chr8_2:49818624-49818643 Msa1252730:intron 20.0%
!! TGTTAGTTATGTCTAAATTT+AGG - chr8_2:49818818-49818837 Msa1252730:intron 20.0%
!! AGTAATAAATTGTTAGAAAC+TGG + chr8_2:49819108-49819127 None:intergenic 20.0%
!! AATACAATTCATTATATCAC+TGG + chr8_2:49819284-49819303 None:intergenic 20.0%
!!! AGAAAAATACATTGATAATG+AGG + chr8_2:49819330-49819349 None:intergenic 20.0%
!!! TGCTATTTTATTTTTCCTAA+TGG - chr8_2:49819378-49819397 Msa1252730:intron 20.0%
!!! TTTTATTTTTCCTAATGGAT+AGG - chr8_2:49819383-49819402 Msa1252730:intron 20.0%
!!! TTTGCATATAGAGATTTTTT+GGG + chr8_2:49819432-49819451 None:intergenic 20.0%
!!! TTTTGCATATAGAGATTTTT+TGG + chr8_2:49819433-49819452 None:intergenic 20.0%
!! AATCACAAAAATAATCTACA+AGG + chr8_2:49819601-49819620 None:intergenic 20.0%
!!! TTTTGTGATTTAGCTTTTTT+TGG - chr8_2:49819611-49819630 Msa1252730:intron 20.0%
!! ACAGATTCTATATAAGTTTA+CGG + chr8_2:49819710-49819729 None:intergenic 20.0%
!! ATATTAAAAATGTACAGGTA+CGG + chr8_2:49819748-49819767 None:intergenic 20.0%
!! CTAAAACTATATAGAATATG+AGG + chr8_2:49819951-49819970 None:intergenic 20.0%
!!! CATATTCTATATAGTTTTAG+TGG - chr8_2:49819951-49819970 Msa1252730:intron 20.0%
!! AGTTTACATTTATAAATCTG+AGG + chr8_2:49820388-49820407 None:intergenic 20.0%
!! TCAGATTTATAAATGTAAAC+TGG - chr8_2:49820387-49820406 Msa1252730:intron 20.0%
!!! ATTTTTAAGAACTCAGAAAA+TGG + chr8_2:49820714-49820733 None:intergenic 20.0%
!! AAAAACTATACGTTAAGAAA+AGG + chr8_2:49820787-49820806 None:intergenic 20.0%
! GTTAAAGAAAGAAAGATGAT+AGG - chr8_2:49814765-49814784 Msa1252730:three_prime_UTR 25.0%
! AAAATGTTGCTGAAATCAAA+AGG - chr8_2:49815110-49815129 Msa1252730:intron 25.0%
! AAATGTTGCTGAAATCAAAA+GGG - chr8_2:49815111-49815130 Msa1252730:intron 25.0%
! CAAAATGCATTACAAAATGA+AGG + chr8_2:49815173-49815192 None:intergenic 25.0%
! GAGAAGAAAAAAAGTGAAAA+GGG + chr8_2:49815260-49815279 None:intergenic 25.0%
! CTAATTTCGCATAAGAAAAT+TGG + chr8_2:49815295-49815314 None:intergenic 25.0%
!! TAATTTAGCTTATAGCGAAT+GGG - chr8_2:49815346-49815365 Msa1252730:intron 25.0%
! GTGATTGAATTTGTATTGTT+TGG - chr8_2:49815384-49815403 Msa1252730:intron 25.0%
! TATGACTAAAAAAAACCGTT+TGG + chr8_2:49815610-49815629 None:intergenic 25.0%
! TATGAATCTAGTCATTGAAT+TGG - chr8_2:49815778-49815797 Msa1252730:CDS 25.0%
! CCACATGATTTAAATATCTT+AGG + chr8_2:49816520-49816539 None:intergenic 25.0%
! CCTAAGATATTTAAATCATG+TGG - chr8_2:49816517-49816536 Msa1252730:intron 25.0%
! GAGGATATATTATTATTGGT+TGG + chr8_2:49816674-49816693 None:intergenic 25.0%
!! CTATCTTTTTACATCACTAT+TGG + chr8_2:49816750-49816769 None:intergenic 25.0%
! ATAGTGATGTAAAAAGATAG+CGG - chr8_2:49816750-49816769 Msa1252730:intron 25.0%
! CAAACATACAAAAGTCTAAT+TGG - chr8_2:49816829-49816848 Msa1252730:intron 25.0%
! AAAACTAACCATAATGATTG+AGG - chr8_2:49817059-49817078 Msa1252730:intron 25.0%
! AATTTAGATAATCAGGGATA+TGG + chr8_2:49817188-49817207 None:intergenic 25.0%
!!! TAAATAAACTCTAAAGCTTC+TGG + chr8_2:49817250-49817269 None:intergenic 25.0%
!!! TGAACATTTGGTCATTTTTT+AGG - chr8_2:49817285-49817304 Msa1252730:intron 25.0%
!!! GAACATTTGGTCATTTTTTA+GGG - chr8_2:49817286-49817305 Msa1252730:intron 25.0%
! CAAAAGATTTGAAAAGTTGA+AGG + chr8_2:49817392-49817411 None:intergenic 25.0%
! ATTCTAAATAAATCTCACCA+AGG - chr8_2:49817503-49817522 Msa1252730:intron 25.0%
! TTCTAAATAAATCTCACCAA+GGG - chr8_2:49817504-49817523 Msa1252730:intron 25.0%
! AGTCAATAAAACTAACAGAA+AGG + chr8_2:49817566-49817585 None:intergenic 25.0%
! CAGATTGAAAATAAATGACT+TGG - chr8_2:49817726-49817745 Msa1252730:intron 25.0%
! AATTTCGATGTCAATTTAGA+AGG + chr8_2:49818187-49818206 None:intergenic 25.0%
! ATTGAAAATGTAGTTAGTGA+GGG - chr8_2:49818389-49818408 Msa1252730:intron 25.0%
! GAAAATTTAAGCGACTTAAA+TGG + chr8_2:49818517-49818536 None:intergenic 25.0%
!! TCTACAAGATTTCATGTTTT+CGG + chr8_2:49818650-49818669 None:intergenic 25.0%
!! ATTATGGGATAGTTTTTGAA+TGG - chr8_2:49818870-49818889 Msa1252730:intron 25.0%
! GATGATTCACACATAATTTA+AGG + chr8_2:49818993-49819012 None:intergenic 25.0%
! ATTACACTTACAATAGAGAA+TGG + chr8_2:49819015-49819034 None:intergenic 25.0%
!! ATTATATCACTGGTAATGAA+TGG + chr8_2:49819274-49819293 None:intergenic 25.0%
! TATAATCAAGGAATTTGATG+TGG - chr8_2:49819684-49819703 Msa1252730:intron 25.0%
! AAAGACTTGTATAAGAACTT+AGG - chr8_2:49819807-49819826 Msa1252730:intron 25.0%
! CAAGTACATTGTTAATAAAG+AGG + chr8_2:49819900-49819919 None:intergenic 25.0%
! CTCTTTATTAACAATGTACT+TGG - chr8_2:49819898-49819917 Msa1252730:intron 25.0%
! AAACTATATAGAATATGAGG+AGG + chr8_2:49819948-49819967 None:intergenic 25.0%
! TCAATAACATATTGCAAGAA+TGG + chr8_2:49820228-49820247 None:intergenic 25.0%
! ATTCTTGCAATATGTTATTG+AGG - chr8_2:49820227-49820246 Msa1252730:intron 25.0%
! TTCTTGCAATATGTTATTGA+GGG - chr8_2:49820228-49820247 Msa1252730:intron 25.0%
! TATCAATTCAACGATTTCAA+TGG - chr8_2:49820357-49820376 Msa1252730:intron 25.0%
!! ATAATGGGAATTTATGGTAT+AGG + chr8_2:49820456-49820475 None:intergenic 25.0%
!! TTGAGAATAATGGGAATTTA+TGG + chr8_2:49820462-49820481 None:intergenic 25.0%
! AATCTTTCAAATGAAGTATG+AGG + chr8_2:49820565-49820584 None:intergenic 25.0%
! CAGAAATACCTATAATAACA+GGG + chr8_2:49820899-49820918 None:intergenic 25.0%
! ACAGAAATACCTATAATAAC+AGG + chr8_2:49820900-49820919 None:intergenic 25.0%
!! GAAATTGAAGGAAGTGTTAA+TGG + chr8_2:49814851-49814870 None:intergenic 30.0%
GATTGTGAAGATGAAATTGA+AGG + chr8_2:49814863-49814882 None:intergenic 30.0%
! TGATTTCAGCAACATTTTCA+AGG + chr8_2:49815108-49815127 None:intergenic 30.0%
GGAGAAGAAAAAAAGTGAAA+AGG + chr8_2:49815261-49815280 None:intergenic 30.0%
! GTAATTTAGCTTATAGCGAA+TGG - chr8_2:49815345-49815364 Msa1252730:intron 30.0%
TAAAAAGATTTAGAGGTCAG+TGG + chr8_2:49816038-49816057 None:intergenic 30.0%
! GTTTTGTCTATGGTTTTTCT+TGG - chr8_2:49816061-49816080 Msa1252730:intron 30.0%
ATGGTTAAATCTCAACTTAG+TGG + chr8_2:49816173-49816192 None:intergenic 30.0%
AACGTCTATTGTAGAAATGA+TGG + chr8_2:49816192-49816211 None:intergenic 30.0%
CATTGTCTTTATTCTGTGTT+GGG - chr8_2:49816303-49816322 Msa1252730:intron 30.0%
TATTTAAATCATGTGGCTTG+TGG - chr8_2:49816524-49816543 Msa1252730:intron 30.0%
! TGGAATGTAAGTTTTGCAAA+AGG + chr8_2:49816559-49816578 None:intergenic 30.0%
TAGTGATGTAAAAAGATAGC+GGG - chr8_2:49816751-49816770 Msa1252730:intron 30.0%
! GTATAATTCGAAGGTGTAAT+TGG - chr8_2:49816884-49816903 Msa1252730:intron 30.0%
AAGAATCATTAGATCATCGT+GGG + chr8_2:49817019-49817038 None:intergenic 30.0%
AAAGAATCATTAGATCATCG+TGG + chr8_2:49817020-49817039 None:intergenic 30.0%
TCTTTCTTTATCCTATTTCC+AGG - chr8_2:49817035-49817054 Msa1252730:intron 30.0%
!!! TCATTATGGTTAGTTTTACC+TGG + chr8_2:49817056-49817075 None:intergenic 30.0%
GTTGAGAGAAAAAGATTACT+TGG - chr8_2:49817093-49817112 Msa1252730:intron 30.0%
! ATTCTCCAAATCTATTTTCC+AGG - chr8_2:49817325-49817344 Msa1252730:intron 30.0%
! TTCTCCAAATCTATTTTCCA+GGG - chr8_2:49817326-49817345 Msa1252730:intron 30.0%
!! TTTTCCAGGGTACATTTTTT+AGG - chr8_2:49817339-49817358 Msa1252730:intron 30.0%
!!! TTTCCAGGGTACATTTTTTA+GGG - chr8_2:49817340-49817359 Msa1252730:intron 30.0%
GATTTGAAAAGTTGAAGGTT+TGG + chr8_2:49817387-49817406 None:intergenic 30.0%
ATAATCCAACTCATTGTGTT+TGG + chr8_2:49817465-49817484 None:intergenic 30.0%
! TAAATGACTTGGCATTTACT+AGG - chr8_2:49817737-49817756 Msa1252730:intron 30.0%
TTCAACCATACCTCTAAATT+AGG + chr8_2:49817831-49817850 None:intergenic 30.0%
! TTTAGAGGTATGGTTGAATT+TGG - chr8_2:49817833-49817852 Msa1252730:intron 30.0%
! TTAGAGGTATGGTTGAATTT+GGG - chr8_2:49817834-49817853 Msa1252730:intron 30.0%
! AATTTGGCCTTTACTATATC+AGG - chr8_2:49817934-49817953 Msa1252730:intron 30.0%
CAAGAAACCTGATATAGTAA+AGG + chr8_2:49817944-49817963 None:intergenic 30.0%
!!! AGGTTTCTTGTGTTGTTTTA+AGG - chr8_2:49817954-49817973 Msa1252730:intron 30.0%
!!! TTTCTTGTGTTGTTTTAAGG+AGG - chr8_2:49817957-49817976 Msa1252730:intron 30.0%
ACAACTAATACTCTCAAGTA+AGG + chr8_2:49818257-49818276 None:intergenic 30.0%
ATACAAATTCTCAGGGAAAA+GGG - chr8_2:49818349-49818368 Msa1252730:intron 30.0%
! CTCACTAACTACATTTTCAA+TGG + chr8_2:49818390-49818409 None:intergenic 30.0%
CATTGAAAATGTAGTTAGTG+AGG - chr8_2:49818388-49818407 Msa1252730:intron 30.0%
! AAAAGGTTTTTACATGAGTG+AGG + chr8_2:49818455-49818474 None:intergenic 30.0%
ATTCATTGGGAAGAAGATTA+AGG + chr8_2:49818592-49818611 None:intergenic 30.0%
TGAAAGGAGAAAGTGATTAT+GGG - chr8_2:49818855-49818874 Msa1252730:intron 30.0%
!!! AGTTTTTGAATGGTTTTGAG+AGG - chr8_2:49818880-49818899 Msa1252730:intron 30.0%
!!! GTTTTTGAATGGTTTTGAGA+GGG - chr8_2:49818881-49818900 Msa1252730:intron 30.0%
TTGAAATTGACCTTTACTGA+TGG + chr8_2:49819064-49819083 None:intergenic 30.0%
TATATAGTGTAAAAGAACCC+TGG + chr8_2:49819192-49819211 None:intergenic 30.0%
!! ACAATTAGTTCTGAACAAAG+TGG + chr8_2:49819241-49819260 None:intergenic 30.0%
!!! GATTTTTTGGGCTTTTTCTT+TGG + chr8_2:49819420-49819439 None:intergenic 30.0%
! AAAGAGACTAAACATTGACT+GGG - chr8_2:49819488-49819507 Msa1252730:intron 30.0%
ACAAAAATAATCTACAAGGC+AGG + chr8_2:49819597-49819616 None:intergenic 30.0%
GCATTATAACAAATAGTAGC+AGG - chr8_2:49819836-49819855 Msa1252730:intron 30.0%
AAATCACTTATGAAGCACAA+TGG + chr8_2:49819994-49820013 None:intergenic 30.0%
AAAGACACATTTGAATGACA+GGG + chr8_2:49820050-49820069 None:intergenic 30.0%
AAAAGACACATTTGAATGAC+AGG + chr8_2:49820051-49820070 None:intergenic 30.0%
TCTTGCAATATGTTATTGAG+GGG - chr8_2:49820229-49820248 Msa1252730:intron 30.0%
AATTCAACGATTTCAATGGT+TGG - chr8_2:49820361-49820380 Msa1252730:intron 30.0%
TATCTATCGTAGAATCAGTT+AGG + chr8_2:49820415-49820434 None:intergenic 30.0%
! CTTTTACTTTGATTCCTCTT+TGG - chr8_2:49820526-49820545 Msa1252730:intron 30.0%
AAGTATGAGGAGATGAATTT+AGG + chr8_2:49820552-49820571 None:intergenic 30.0%
TCCTTAATGCAAAGCTTAAA+GGG + chr8_2:49820827-49820846 None:intergenic 30.0%
TTCCTTAATGCAAAGCTTAA+AGG + chr8_2:49820828-49820847 None:intergenic 30.0%
AGGGAACGAATGAAAGAATT+CGG + chr8_2:49814970-49814989 None:intergenic 35.0%
! TGAAAATGAAGATGCTGACT+TGG - chr8_2:49814994-49815013 Msa1252730:CDS 35.0%
!! GAAAATGAAGATGCTGACTT+GGG - chr8_2:49814995-49815014 Msa1252730:CDS 35.0%
!! AACATTTTCAAGGTCTTGAG+GGG + chr8_2:49815098-49815117 None:intergenic 35.0%
!! CAACATTTTCAAGGTCTTGA+GGG + chr8_2:49815099-49815118 None:intergenic 35.0%
! TGGAGCTTCTAAAGAAAAAC+AGG - chr8_2:49815211-49815230 Msa1252730:intron 35.0%
! GGAGCTTCTAAAGAAAAACA+GGG - chr8_2:49815212-49815231 Msa1252730:intron 35.0%
AAAAACAGGGACATGTTGTT+TGG - chr8_2:49815225-49815244 Msa1252730:intron 35.0%
! AAAACAGGGACATGTTGTTT+GGG - chr8_2:49815226-49815245 Msa1252730:intron 35.0%
!! TATGCGAAATTAGCTCTGTT+TGG - chr8_2:49815302-49815321 Msa1252730:intron 35.0%
AAATAAGCTATACGAGCATG+AGG - chr8_2:49815572-49815591 Msa1252730:intron 35.0%
GGCAACTAGAGTAGATTAAA+TGG + chr8_2:49816115-49816134 None:intergenic 35.0%
TTAATCTACTCTAGTTGCCA+TGG - chr8_2:49816116-49816135 Msa1252730:intron 35.0%
ACACCAGACAAAATAGGATT+AGG + chr8_2:49816242-49816261 None:intergenic 35.0%
GCATTGTCTTTATTCTGTGT+TGG - chr8_2:49816302-49816321 Msa1252730:intron 35.0%
TAAGACAGCCAATGTTGTAT+AGG + chr8_2:49816351-49816370 None:intergenic 35.0%
!! AAGGTATTGCTCAAGCTAAA+GGG + chr8_2:49816395-49816414 None:intergenic 35.0%
!! AAAGGTATTGCTCAAGCTAA+AGG + chr8_2:49816396-49816415 None:intergenic 35.0%
! GGGCGTTTTATGTGATAAAA+AGG + chr8_2:49816414-49816433 None:intergenic 35.0%
! TTTTATCACATAAAACGCCC+AGG - chr8_2:49816414-49816433 Msa1252730:CDS 35.0%
TGTAAACCATCATCTTCAAG+CGG + chr8_2:49816462-49816481 None:intergenic 35.0%
! CAAAACAACAGAGATTTGCT+GGG + chr8_2:49816488-49816507 None:intergenic 35.0%
TCAAAACAACAGAGATTTGC+TGG + chr8_2:49816489-49816508 None:intergenic 35.0%
TAGAAGTAAGACGAATGATG+TGG + chr8_2:49816579-49816598 None:intergenic 35.0%
TTCGTCTTACTTCTACTCAA+TGG - chr8_2:49816584-49816603 Msa1252730:intron 35.0%
AATAAATGACGTTAGAGGCT+TGG + chr8_2:49816636-49816655 None:intergenic 35.0%
GAGGAAATAAATGACGTTAG+AGG + chr8_2:49816641-49816660 None:intergenic 35.0%
ACGTCATTTATTTCCTCTCT+TGG - chr8_2:49816644-49816663 Msa1252730:intron 35.0%
!! GCTATACGTACTTTTTGTTG+AGG + chr8_2:49816693-49816712 None:intergenic 35.0%
! TAACAATAGGATTTGCTTCC+AGG + chr8_2:49816789-49816808 None:intergenic 35.0%
! TGGAGCTTTTCAAATCTTGA+TGG + chr8_2:49816972-49816991 None:intergenic 35.0%
ATCAAGATTTGAAAAGCTCC+AGG - chr8_2:49816971-49816990 Msa1252730:intron 35.0%
!!! GGTTAGTTTTACCTGGAAAT+AGG + chr8_2:49817049-49817068 None:intergenic 35.0%
! CTTTTTCTCTCAACATCTCT+GGG + chr8_2:49817087-49817106 None:intergenic 35.0%
! TCTTTTTCTCTCAACATCTC+TGG + chr8_2:49817088-49817107 None:intergenic 35.0%
! TCTTGTTTGGGATGAACATT+TGG - chr8_2:49817273-49817292 Msa1252730:intron 35.0%
!!! TTTTTTAGGGTACAGACCTT+TGG - chr8_2:49817299-49817318 Msa1252730:intron 35.0%
AGATTTGGAGAATAAGCCAA+AGG + chr8_2:49817318-49817337 None:intergenic 35.0%
TGTACCCTGGAAAATAGATT+TGG + chr8_2:49817333-49817352 None:intergenic 35.0%
TTACCCTAAAAAATGTACCC+TGG + chr8_2:49817346-49817365 None:intergenic 35.0%
TTGGTTCAAGCACACAAAAA+TGG + chr8_2:49817446-49817465 None:intergenic 35.0%
TTGAACCAAACACAATGAGT+TGG - chr8_2:49817457-49817476 Msa1252730:intron 35.0%
! CACTTTAGAAACGTGTAGAA+GGG + chr8_2:49817603-49817622 None:intergenic 35.0%
! TCACTTTAGAAACGTGTAGA+AGG + chr8_2:49817604-49817623 None:intergenic 35.0%
TCTGTCTTGTATATATGTGC+TGG - chr8_2:49817669-49817688 Msa1252730:intron 35.0%
ATAGTAAAGGCCAAATTGTG+TGG + chr8_2:49817931-49817950 None:intergenic 35.0%
GGTTAATTGTGTTCAGTAGA+TGG - chr8_2:49818084-49818103 Msa1252730:CDS 35.0%
GGTAGTCATACAAATTCTCA+GGG - chr8_2:49818342-49818361 Msa1252730:intron 35.0%
CATACAAATTCTCAGGGAAA+AGG - chr8_2:49818348-49818367 Msa1252730:intron 35.0%
CAGTAGTAAATCTTTGTGCA+AGG + chr8_2:49818682-49818701 None:intergenic 35.0%
GGAATAAGTAGAGAAGTGAA+AGG - chr8_2:49818839-49818858 Msa1252730:intron 35.0%
GTGAAAGGAGAAAGTGATTA+TGG - chr8_2:49818854-49818873 Msa1252730:intron 35.0%
ATGTATCATGCCATCAGTAA+AGG - chr8_2:49819051-49819070 Msa1252730:intron 35.0%
! TATCACTGGTAATGAATGGA+AGG + chr8_2:49819270-49819289 None:intergenic 35.0%
GATAATTCAGCCTATCCATT+AGG + chr8_2:49819396-49819415 None:intergenic 35.0%
CAAAGAGACTAAACATTGAC+TGG - chr8_2:49819487-49819506 Msa1252730:intron 35.0%
AATAATCTACAAGGCAGGTA+AGG + chr8_2:49819592-49819611 None:intergenic 35.0%
TATCTTAAACCAGTCTCAGA+AGG - chr8_2:49820071-49820090 Msa1252730:intron 35.0%
ATCTTAAACCAGTCTCAGAA+GGG - chr8_2:49820072-49820091 Msa1252730:intron 35.0%
CTTGCAATATGTTATTGAGG+GGG - chr8_2:49820230-49820249 Msa1252730:intron 35.0%
CAATCTTAGAGCTTGAACTT+AGG + chr8_2:49820333-49820352 None:intergenic 35.0%
GGGAATTTATGGTATAGGAT+AGG + chr8_2:49820451-49820470 None:intergenic 35.0%
GGCTAGAGATTGAGAATAAT+GGG + chr8_2:49820471-49820490 None:intergenic 35.0%
AGGCTAGAGATTGAGAATAA+TGG + chr8_2:49820472-49820491 None:intergenic 35.0%
AGTAAAAGAAGACACGTTCA+CGG + chr8_2:49820514-49820533 None:intergenic 35.0%
!! AGAAAATGGACTAGCTAATG+TGG + chr8_2:49820700-49820719 None:intergenic 35.0%
ACCCTTTAAGCTTTGCATTA+AGG - chr8_2:49820823-49820842 Msa1252730:CDS 35.0%
! AAGGAAGTTCTTTTTCTTGC+AGG - chr8_2:49820842-49820861 Msa1252730:CDS 35.0%
! AGGAAGTTCTTTTTCTTGCA+GGG - chr8_2:49820843-49820862 Msa1252730:CDS 35.0%
TCAGCTTTCCCTGTTATTAT+AGG - chr8_2:49820888-49820907 Msa1252730:CDS 35.0%
!! GAAGGAAGTGTTAATGGCAA+CGG + chr8_2:49814845-49814864 None:intergenic 40.0%
TCTCACTCTCTCTTTACCAA+CGG - chr8_2:49814911-49814930 Msa1252730:CDS 40.0%
! GCATCTTCATTTTCAGCAGA+GGG + chr8_2:49814989-49815008 None:intergenic 40.0%
! AGCATCTTCATTTTCAGCAG+AGG + chr8_2:49814990-49815009 None:intergenic 40.0%
! ATCATCAAGTTGCTGTGTAG+AGG + chr8_2:49815026-49815045 None:intergenic 40.0%
!! GCAACATTTTCAAGGTCTTG+AGG + chr8_2:49815100-49815119 None:intergenic 40.0%
AAGCTCCAAAACCTGCAAAA+GGG + chr8_2:49815199-49815218 None:intergenic 40.0%
! AAACAGGGACATGTTGTTTG+GGG - chr8_2:49815227-49815246 Msa1252730:intron 40.0%
ATACGAGCATGAGGAAATGA+CGG - chr8_2:49815581-49815600 Msa1252730:intron 40.0%
AGGAAATGACGGTTACCAAA+CGG - chr8_2:49815592-49815611 Msa1252730:intron 40.0%
CTTGAGAGATTCAAGATCGA+AGG - chr8_2:49815701-49815720 Msa1252730:intron 40.0%
CAATCGAGATTTATCCCACT+AGG - chr8_2:49815942-49815961 Msa1252730:intron 40.0%
CAGTGGTTTGACTATAGACA+TGG + chr8_2:49816021-49816040 None:intergenic 40.0%
GAGGTGACTTATAGATTCCA+TGG + chr8_2:49816136-49816155 None:intergenic 40.0%
! GGTCCTAATCCTATTTTGTC+TGG - chr8_2:49816236-49816255 Msa1252730:intron 40.0%
GTGGAAACACCAGACAAAAT+AGG + chr8_2:49816248-49816267 None:intergenic 40.0%
AGCCAATGTTGTATAGGATG+GGG + chr8_2:49816345-49816364 None:intergenic 40.0%
CAGCCAATGTTGTATAGGAT+GGG + chr8_2:49816346-49816365 None:intergenic 40.0%
ACAGCCAATGTTGTATAGGA+TGG + chr8_2:49816347-49816366 None:intergenic 40.0%
TAAACCATCATCTTCAAGCG+GGG + chr8_2:49816460-49816479 None:intergenic 40.0%
GTAAACCATCATCTTCAAGC+GGG + chr8_2:49816461-49816480 None:intergenic 40.0%
GTCTTACTTCTACTCAATGG+AGG - chr8_2:49816587-49816606 Msa1252730:intron 40.0%
AAGAGATGCACAGTAAAACC+TGG + chr8_2:49816992-49817011 None:intergenic 40.0%
! TCTGGGATCCTCAATCATTA+TGG + chr8_2:49817070-49817089 None:intergenic 40.0%
TAACTAGGTCGTCTCTTGTT+GGG + chr8_2:49817137-49817156 None:intergenic 40.0%
CTTCTTCCAAAGCAGTAACT+AGG + chr8_2:49817152-49817171 None:intergenic 40.0%
! GTACTTTTGCAACCTGAAAG+TGG + chr8_2:49817544-49817563 None:intergenic 40.0%
TGGCATTTACTAGGTGAATG+AGG - chr8_2:49817746-49817765 Msa1252730:intron 40.0%
GGCATTTACTAGGTGAATGA+GGG - chr8_2:49817747-49817766 Msa1252730:intron 40.0%
GCATTTACTAGGTGAATGAG+GGG - chr8_2:49817748-49817767 Msa1252730:intron 40.0%
GAATGAGGGGAAAATTCCAA+AGG - chr8_2:49817761-49817780 Msa1252730:intron 40.0%
TACCTCTAAATTAGGCCATG+CGG + chr8_2:49817823-49817842 None:intergenic 40.0%
CATGGCCTAATTTAGAGGTA+TGG - chr8_2:49817823-49817842 Msa1252730:intron 40.0%
ATGTCTTGAACATGTGAGTG+AGG - chr8_2:49817887-49817906 Msa1252730:intron 40.0%
GGGTAGTCATACAAATTCTC+AGG - chr8_2:49818341-49818360 Msa1252730:intron 40.0%
! GTTTTTACATGAGTGAGGTG+TGG + chr8_2:49818450-49818469 None:intergenic 40.0%
! GAGAGCGTGATTCATTCATT+GGG + chr8_2:49818605-49818624 None:intergenic 40.0%
! TGAGAGCGTGATTCATTCAT+TGG + chr8_2:49818606-49818625 None:intergenic 40.0%
AGACCAAGCTCTCTAATTCT+TGG - chr8_2:49818906-49818925 Msa1252730:intron 40.0%
CAAGCTCTCTAATTCTTGGA+GGG - chr8_2:49818910-49818929 Msa1252730:intron 40.0%
ACCTCTCGAATTTCTTGGAT+GGG - chr8_2:49818937-49818956 Msa1252730:intron 40.0%
TTTGACCAATTTGATTGCCG+TGG - chr8_2:49819155-49819174 Msa1252730:intron 40.0%
TATGCAAAAACCACTGACAC+TGG - chr8_2:49819444-49819463 Msa1252730:intron 40.0%
CTGCACAACAATAATCATGG+TGG + chr8_2:49819641-49819660 None:intergenic 40.0%
GGTCTGCACAACAATAATCA+TGG + chr8_2:49819644-49819663 None:intergenic 40.0%
TATGAAGCACAATGGTGTGA+AGG + chr8_2:49819986-49820005 None:intergenic 40.0%
TTCACTCCCAGTTCTATTGT+TGG - chr8_2:49820121-49820140 Msa1252730:intron 40.0%
TCACTCCCAGTTCTATTGTT+GGG - chr8_2:49820122-49820141 Msa1252730:intron 40.0%
TGCAAGAATGGCTGCAAATA+AGG + chr8_2:49820216-49820235 None:intergenic 40.0%
!! ACCTTAGAAGTCGGTTTTCT+GGG - chr8_2:49820294-49820313 Msa1252730:intron 40.0%
GAGATGAATTTAGGCCAAAG+AGG + chr8_2:49820543-49820562 None:intergenic 40.0%
! TTCTTTTTCTTGCAGGGCTA+TGG - chr8_2:49820849-49820868 Msa1252730:CDS 40.0%
AGCTACGAGTCGTTTAGCAA+TGG - chr8_2:49814799-49814818 Msa1252730:three_prime_UTR 45.0%
TGAGAACAGCGAAAGGTTGA+AGG + chr8_2:49814896-49814915 None:intergenic 45.0%
CTTGGTGAATTGTGTTCCGT+TGG + chr8_2:49814930-49814949 None:intergenic 45.0%
TGAAAGAATTCGGCGATGAG+TGG + chr8_2:49814960-49814979 None:intergenic 45.0%
!! TTTTCAAGGTCTTGAGGGGT+TGG + chr8_2:49815094-49815113 None:intergenic 45.0%
!! GCATTTTGATGCCCTTTTGC+AGG - chr8_2:49815185-49815204 Msa1252730:intron 45.0%
! TGATGCCCTTTTGCAGGTTT+TGG - chr8_2:49815191-49815210 Msa1252730:intron 45.0%
GAAGCTCCAAAACCTGCAAA+AGG + chr8_2:49815200-49815219 None:intergenic 45.0%
! GAATGGGCTTGTGATAAGCT+AGG - chr8_2:49815362-49815381 Msa1252730:intron 45.0%
TCGAGATTTATCCCACTAGG+TGG - chr8_2:49815945-49815964 Msa1252730:intron 45.0%
CGAGATTTATCCCACTAGGT+GGG - chr8_2:49815946-49815965 Msa1252730:intron 45.0%
GAGATTTATCCCACTAGGTG+GGG - chr8_2:49815947-49815966 Msa1252730:intron 45.0%
TATAGTTGACCCCACCTAGT+GGG + chr8_2:49815959-49815978 None:intergenic 45.0%
ATATAGTTGACCCCACCTAG+TGG + chr8_2:49815960-49815979 None:intergenic 45.0%
ACTAGGTGGGGTCAACTATA+TGG - chr8_2:49815959-49815978 Msa1252730:intron 45.0%
! CTTAGTGGTTTGCACATGTG+TGG + chr8_2:49816158-49816177 None:intergenic 45.0%
GTCTGGTGTTTCCACTCATT+CGG - chr8_2:49816253-49816272 Msa1252730:intron 45.0%
AGTATGTTGTGCCGAATGAG+TGG + chr8_2:49816267-49816286 None:intergenic 45.0%
TCGGCACAACATACTCATCT+TGG - chr8_2:49816272-49816291 Msa1252730:intron 45.0%
! GTTGTATAGGATGGGGTGTT+GGG + chr8_2:49816338-49816357 None:intergenic 45.0%
TGTTGTATAGGATGGGGTGT+TGG + chr8_2:49816339-49816358 None:intergenic 45.0%
CACCCCATCCTATACAACAT+TGG - chr8_2:49816340-49816359 Msa1252730:CDS 45.0%
! AGCGGGCTTAAAATTGAACC+TGG - chr8_2:49816768-49816787 Msa1252730:intron 45.0%
AACTAGGTCGTCTCTTGTTG+GGG + chr8_2:49817136-49817155 None:intergenic 45.0%
GTAACTAGGTCGTCTCTTGT+TGG + chr8_2:49817138-49817157 None:intergenic 45.0%
AGACGACCTAGTTACTGCTT+TGG - chr8_2:49817143-49817162 Msa1252730:intron 45.0%
GCATATTCCAGTCCACTTTC+AGG - chr8_2:49817529-49817548 Msa1252730:intron 45.0%
TTTGCAACCTGAAAGTGGAC+TGG + chr8_2:49817539-49817558 None:intergenic 45.0%
TGGAGAACAGCTCTATCCTT+TGG + chr8_2:49817780-49817799 None:intergenic 45.0%
TCATTTCCTCAGCAAGCATC+TGG + chr8_2:49817800-49817819 None:intergenic 45.0%
TGCATCGTGTCCACACAATT+TGG - chr8_2:49817918-49817937 Msa1252730:intron 45.0%
GGAGATACAAGAACAACGCA+AGG + chr8_2:49818496-49818515 None:intergenic 45.0%
CCTCCAAGAATTAGAGAGCT+TGG + chr8_2:49818912-49818931 None:intergenic 45.0%
CCAAGCTCTCTAATTCTTGG+AGG - chr8_2:49818909-49818928 Msa1252730:intron 45.0%
GAGAGACCTCTCGAATTTCT+TGG - chr8_2:49818932-49818951 Msa1252730:intron 45.0%
GACCTCTCGAATTTCTTGGA+TGG - chr8_2:49818936-49818955 Msa1252730:intron 45.0%
TCCCATCCAAGAAATTCGAG+AGG + chr8_2:49818941-49818960 None:intergenic 45.0%
TTCCACCACGGCAATCAAAT+TGG + chr8_2:49819163-49819182 None:intergenic 45.0%
!! AACAGAAGTGCCTTCAGCAT+TGG - chr8_2:49819551-49819570 Msa1252730:intron 45.0%
AAGGAACTGACCAATGCTGA+AGG + chr8_2:49819564-49819583 None:intergenic 45.0%
!! ATCTGTAACCCTTCTGAGAC+TGG + chr8_2:49820083-49820102 None:intergenic 45.0%
TCCAACACACTAGGTGATGT+GGG + chr8_2:49820266-49820285 None:intergenic 45.0%
ACAGTCCTCACCTTAGAAGT+CGG - chr8_2:49820285-49820304 Msa1252730:intron 45.0%
!! GAAAACCGACTTCTAAGGTG+AGG + chr8_2:49820293-49820312 None:intergenic 45.0%
!! CACCTTAGAAGTCGGTTTTC+TGG - chr8_2:49820293-49820312 Msa1252730:intron 45.0%
!! CCTTAGAAGTCGGTTTTCTG+GGG - chr8_2:49820295-49820314 Msa1252730:intron 45.0%
!! GTGGGAAAAGTACTAGAGAC+AGG + chr8_2:49820492-49820511 None:intergenic 45.0%
AAAGAAGACACGTTCACGGT+GGG + chr8_2:49820510-49820529 None:intergenic 45.0%
AAAAGAAGACACGTTCACGG+TGG + chr8_2:49820511-49820530 None:intergenic 45.0%
! GTTTTACAACTCCCTCCAGT+AGG - chr8_2:49820932-49820951 Msa1252730:CDS 45.0%
ATGTTCACCTGACATCATCC+AGG - chr8_2:49821019-49821038 Msa1252730:CDS 45.0%
TGTTCACCTGACATCATCCA+GGG - chr8_2:49821020-49821039 Msa1252730:CDS 45.0%
AAACAACCCTGGATGATGTC+AGG + chr8_2:49821029-49821048 None:intergenic 45.0%
TGCTCCTCTTAGGATGTGTT+TGG - chr8_2:49821113-49821132 Msa1252730:five_prime_UTR 45.0%
!! ATTTGAATAATAAAATTTAT+TGG + chr8_2:49818545-49818564 None:intergenic 5.0%
GAGTCGTTTAGCAATGGCAG+TGG - chr8_2:49814805-49814824 Msa1252730:three_prime_UTR 50.0%
GAGAGAGTGAGAACAGCGAA+AGG + chr8_2:49814903-49814922 None:intergenic 50.0%
! AGTGGTTTGCACATGTGTGG+AGG + chr8_2:49816155-49816174 None:intergenic 50.0%
!! ATTGGTTGGTGAGCCAAGAG+AGG + chr8_2:49816660-49816679 None:intergenic 50.0%
! TGTTCTCCAGATGCTTGCTG+AGG - chr8_2:49817791-49817810 Msa1252730:intron 50.0%
TTGCTGAGGAAATGACCGCA+TGG - chr8_2:49817805-49817824 Msa1252730:intron 50.0%
GACCGCATGGCCTAATTTAG+AGG - chr8_2:49817818-49817837 Msa1252730:intron 50.0%
GACCAATTTGATTGCCGTGG+TGG - chr8_2:49819158-49819177 Msa1252730:intron 50.0%
! AGGATCGATTCCAGTGTCAG+TGG + chr8_2:49819457-49819476 None:intergenic 50.0%
CACTGGAATCGATCCTCAAG+TGG - chr8_2:49819461-49819480 Msa1252730:intron 50.0%
AGTCTCTTTGCAGCCACTTG+AGG + chr8_2:49819477-49819496 None:intergenic 50.0%
ATCTACAAGGCAGGTAAGGC+AGG + chr8_2:49819588-49819607 None:intergenic 50.0%
TGACAGGGCTGAGAGTTCAT+CGG + chr8_2:49820035-49820054 None:intergenic 50.0%
GGCAGCCCAACAATAGAACT+GGG + chr8_2:49820130-49820149 None:intergenic 50.0%
AGGCAGCCCAACAATAGAAC+TGG + chr8_2:49820131-49820150 None:intergenic 50.0%
GTCCAAGATCCAGGCTCATT+GGG - chr8_2:49820156-49820175 Msa1252730:intron 50.0%
ACACGTACATCCCCATACCT+AGG + chr8_2:49820182-49820201 None:intergenic 50.0%
AGGTATGGGGATGTACGTGT+TGG - chr8_2:49820182-49820201 Msa1252730:intron 50.0%
TCCCACATCACCTAGTGTGT+TGG - chr8_2:49820262-49820281 Msa1252730:intron 50.0%
GTCCAACACACTAGGTGATG+TGG + chr8_2:49820267-49820286 None:intergenic 50.0%
TGAGGACTGTCCAACACACT+AGG + chr8_2:49820275-49820294 None:intergenic 50.0%
! CCCCAGAAAACCGACTTCTA+AGG + chr8_2:49820298-49820317 None:intergenic 50.0%
!!! GGTTTTCTGGGGTTTGAGCT+AGG - chr8_2:49820306-49820325 Msa1252730:intron 50.0%
! GGGCTATGGAGCACTATACT+TGG - chr8_2:49820863-49820882 Msa1252730:CDS 50.0%
CCATACCAGTTCCTACTGGA+GGG + chr8_2:49820946-49820965 None:intergenic 50.0%
AGTGCCATACCAGTTCCTAC+TGG + chr8_2:49820950-49820969 None:intergenic 50.0%
CGAACTAGCTCAAACAACCC+TGG + chr8_2:49821040-49821059 None:intergenic 50.0%
! CCTAAGAGGAGCACACTACA+AGG + chr8_2:49821106-49821125 None:intergenic 50.0%
CCTTGTAGTGTGCTCCTCTT+AGG - chr8_2:49821103-49821122 Msa1252730:five_prime_UTR 50.0%
! GCGATGAGTGGTGCTAAGCT+TGG + chr8_2:49814948-49814967 None:intergenic 55.0%
! CAGGGACATGTTGTTTGGGG+AGG - chr8_2:49815230-49815249 Msa1252730:intron 55.0%
!! GTATAGGATGGGGTGTTGGG+AGG + chr8_2:49816335-49816354 None:intergenic 55.0%
ACCATCATCTTCAAGCGGGG+TGG + chr8_2:49816457-49816476 None:intergenic 55.0%
GGACTGGAATATGCTGCCCT+TGG + chr8_2:49817523-49817542 None:intergenic 55.0%
CCCTGGCTGTATTTCCACCA+CGG + chr8_2:49819175-49819194 None:intergenic 55.0%
! CCGTGGTGGAAATACAGCCA+GGG - chr8_2:49819172-49819191 Msa1252730:intron 55.0%
CAAGGCAGGTAAGGCAGGTA+AGG + chr8_2:49819583-49819602 None:intergenic 55.0%
GACAGGGCTGAGAGTTCATC+GGG + chr8_2:49820034-49820053 None:intergenic 55.0%
CGTCCAAGATCCAGGCTCAT+TGG - chr8_2:49820155-49820174 Msa1252730:intron 55.0%
ATACCTAGGCCCAATGAGCC+TGG + chr8_2:49820168-49820187 None:intergenic 55.0%
AGGCTCATTGGGCCTAGGTA+TGG - chr8_2:49820167-49820186 Msa1252730:intron 55.0%
GGCTCATTGGGCCTAGGTAT+GGG - chr8_2:49820168-49820187 Msa1252730:intron 55.0%
GCTCATTGGGCCTAGGTATG+GGG - chr8_2:49820169-49820188 Msa1252730:intron 55.0%
CAACTCCCTCCAGTAGGAAC+TGG - chr8_2:49820938-49820957 Msa1252730:CDS 55.0%
CCCTCCAGTAGGAACTGGTA+TGG - chr8_2:49820943-49820962 Msa1252730:CDS 55.0%
GCCATACCAGTTCCTACTGG+AGG + chr8_2:49820947-49820966 None:intergenic 55.0%
GCTCGCAGTGGAGAGAGTTG+GGG + chr8_2:49816216-49816235 None:intergenic 60.0%
CGCTCGCAGTGGAGAGAGTT+GGG + chr8_2:49816217-49816236 None:intergenic 60.0%
CCAACTCTCTCCACTGCGAG+CGG - chr8_2:49816215-49816234 Msa1252730:intron 60.0%
AGGATTAGGACCGCTCGCAG+TGG + chr8_2:49816228-49816247 None:intergenic 60.0%
CTGAAGTGGAGGAGGGTCCT+GGG + chr8_2:49816434-49816453 None:intergenic 60.0%
TTCAAGCGGGGTGGCTGAAG+TGG + chr8_2:49816448-49816467 None:intergenic 60.0%
GCCACCCCGCTTGAAGATGA+TGG - chr8_2:49816453-49816472 Msa1252730:CDS 60.0%
! GCCGTGGTGGAAATACAGCC+AGG - chr8_2:49819171-49819190 Msa1252730:intron 60.0%
GGCTGAGAGTTCATCGGGAC+AGG + chr8_2:49820029-49820048 None:intergenic 60.0%
GCCTGCATCGTCCAAGATCC+AGG - chr8_2:49820147-49820166 Msa1252730:intron 60.0%
GCCTGGATCTTGGACGATGC+AGG + chr8_2:49820151-49820170 None:intergenic 60.0%
GGCCCAATGAGCCTGGATCT+TGG + chr8_2:49820161-49820180 None:intergenic 60.0%
GATCCAGGCTCATTGGGCCT+AGG - chr8_2:49820162-49820181 Msa1252730:intron 60.0%
CCGCTCGCAGTGGAGAGAGT+TGG + chr8_2:49816218-49816237 None:intergenic 65.0%
GCTGAAGTGGAGGAGGGTCC+TGG + chr8_2:49816435-49816454 None:intergenic 65.0%
GGGGTGGCTGAAGTGGAGGA+GGG + chr8_2:49816441-49816460 None:intergenic 65.0%
AAGCGGGGTGGCTGAAGTGG+AGG + chr8_2:49816445-49816464 None:intergenic 65.0%
CGGGGTGGCTGAAGTGGAGG+AGG + chr8_2:49816442-49816461 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 49814752 49821136 49814752 ID=Msa1252730;Name=Msa1252730
chr8_2 mRNA 49814752 49821136 49814752 ID=Msa1252730-mRNA-1;Parent=Msa1252730;Name=Msa1252730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=66|0.66|0.85|0.85|0.83|1|7|151|314
chr8_2 exon 49814752 49815024 49814752 ID=Msa1252730-mRNA-1:exon:15123;Parent=Msa1252730-mRNA-1
chr8_2 exon 49815705 49815804 49815705 ID=Msa1252730-mRNA-1:exon:15122;Parent=Msa1252730-mRNA-1
chr8_2 exon 49816316 49816483 49816316 ID=Msa1252730-mRNA-1:exon:15121;Parent=Msa1252730-mRNA-1
chr8_2 exon 49818049 49818129 49818049 ID=Msa1252730-mRNA-1:exon:15120;Parent=Msa1252730-mRNA-1
chr8_2 exon 49818718 49818831 49818718 ID=Msa1252730-mRNA-1:exon:15119;Parent=Msa1252730-mRNA-1
chr8_2 exon 49820637 49820681 49820637 ID=Msa1252730-mRNA-1:exon:15118;Parent=Msa1252730-mRNA-1
chr8_2 exon 49820756 49821136 49820756 ID=Msa1252730-mRNA-1:exon:15117;Parent=Msa1252730-mRNA-1
chr8_2 five_prime_UTR 49821071 49821136 49821071 ID=Msa1252730-mRNA-1:five_prime_utr;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49820756 49821070 49820756 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49820637 49820681 49820637 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49818718 49818831 49818718 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49818049 49818129 49818049 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49816316 49816483 49816316 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49815705 49815804 49815705 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 CDS 49814903 49815024 49814903 ID=Msa1252730-mRNA-1:cds;Parent=Msa1252730-mRNA-1
chr8_2 three_prime_UTR 49814752 49814902 49814752 ID=Msa1252730-mRNA-1:three_prime_utr;Parent=Msa1252730-mRNA-1
Gene Sequence

>Msa1252730

ATGGCAGTGGCATCATCATCACAACCGTTGCCATTAACACTTCCTTCAATTTCATCTTCACAATCACATTCTCTTCCTTCAACCTTTCGCTGTTCTCACTCTCTCTTTACCAACGGAACACAATTCACCAAGCTTAGCACCACTCATCGCCGAATTCTTTCATTCGTTCCCTCTGCTGAAAATGAAGATGCTGACTTGGGTGTTTCCTCTACACAGCAACTTGATGATGAAGTTGATGATGATGATGTTGTTGTTGATGATGATGAAGAAGAACCAACCCCTCAAGACCTTGAAAATGTTGCTGAAATCAAAAGGGTTTTGGAGCTTCTAAAGAAAAACAGGGACATGTTGTTTGGGGAGGTAAAACTAACCATAATGATTGAGGATCCCAGAGATGTTGAGAGAAAAAGATTACTTGGTATTGAAGATCTTGATGCCCCAACAAGAGACGACCTAGTTACTGCTTTGGAAGAAGTGAATGAGGGGAAAATTCCAAAGGATAGAGCTGTTCTCCAGATGCTTGCTGAGGAAATGACCGCATGGCCTAATTTAGAGGCTGAATTATCACCAAAGAAAAAGCCCAAAAAATCTCTATATGCAAAAACCACTGACACTGGAATCGATCCTCAAGTGGCTGCAAAGAGACTAAACATTGACTGGGATTCTGCTGCTGAAATTGAAGATGCGAATACTGACGATGAAACAGAAGTGCCTTCAGCATTGTCTCAGAAGGGTTACAGATTTTACATCTTTAAGCAACTTCACTCCCAGTTCTATTGTTGGGCTGCCTGCATCGTCCAAGATCCAGGCTCATTGGGCCTAGGGCTATGGAGCACTATACTTGGTTTCAGCTTTCCCTGTTATTATAGGTATTTCTGTAGTTTTGATTTTGTTTTACAACTCCCTCCAGTAGGAACTGGTATGGCACTCAAATTCAGTGTATAA

Protein sequence

>Msa1252730

MAVASSSQPLPLTLPSISSSQSHSLPSTFRCSHSLFTNGTQFTKLSTTHRRILSFVPSAENEDADLGVSSTQQLDDEVDDDDVVVDDDEEEPTPQDLENVAEIKRVLELLKKNRDMLFGEVKLTIMIEDPRDVERKRLLGIEDLDAPTRDDLVTALEEVNEGKIPKDRAVLQMLAEEMTAWPNLEAELSPKKKPKKSLYAKTTDTGIDPQVAAKRLNIDWDSAAEIEDANTDDETEVPSALSQKGYRFYIFKQLHSQFYCWAACIVQDPGSLGLGLWSTILGFSFPCYYRYFCSFDFVLQLPPVGTGMALKFSV*