AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017120 MtrunA17_Chr1g0168601 79.021 286 8 1 1 286 1 234 6.21e-161 446
Msa0017120 MtrunA17_Chr3g0116631 36.655 281 168 3 10 284 9 285 2.58e-50 167
Msa0017120 MtrunA17_Chr3g0116631 39.535 86 52 0 201 286 105 190 9.95e-11 61.2
Msa0017120 MtrunA17_Chr4g0058151 45.614 171 90 1 115 282 123 293 2.64e-47 160
Msa0017120 MtrunA17_Chr4g0058151 48.780 82 41 1 115 196 217 297 1.85e-19 86.3
Msa0017120 MtrunA17_Chr7g0267571 34.498 229 127 2 70 286 76 293 5.92e-47 159
Msa0017120 MtrunA17_Chr1g0181111 34.815 270 147 4 38 284 12 275 1.36e-44 152
Msa0017120 MtrunA17_Chr1g0177101 40.860 186 102 1 108 285 102 287 2.56e-42 147
Msa0017120 MtrunA17_Chr3g0087481 41.143 175 95 1 115 281 61 235 1.14e-40 140
Msa0017120 MtrunA17_Chr5g0411091 35.556 180 109 3 111 284 93 271 1.92e-21 92.0
Msa0017120 MtrunA17_Chr2g0328791 31.034 174 117 2 116 286 17 190 3.40e-21 92.8
Msa0017120 MtrunA17_Chr4g0035001 42.683 82 47 0 201 282 2 83 3.55e-20 85.1
Msa0017120 MtrunA17_Chr4g0035051 40.244 82 49 0 201 282 4 85 5.41e-19 80.9
Msa0017120 MtrunA17_Chr3g0132451 31.472 197 117 7 98 285 74 261 6.49e-19 84.7
Msa0017120 MtrunA17_Chr4g0074711 29.651 172 118 2 116 284 76 247 6.52e-18 83.2
Msa0017120 MtrunA17_Chr3g0110211 31.351 185 122 2 101 284 12 192 2.09e-17 81.3
Msa0017120 MtrunA17_Chr4g0035031 41.463 82 48 0 201 282 4 85 4.06e-17 77.8
Msa0017120 MtrunA17_Chr4g0050781 41.975 81 47 0 202 282 4 84 7.70e-17 77.4
Msa0017120 MtrunA17_Chr7g0276201 30.876 217 123 5 75 286 75 269 8.07e-17 80.1
Msa0017120 MtrunA17_Chr7g0276201 27.528 178 121 6 111 282 181 356 3.93e-11 63.2
Msa0017120 MtrunA17_Chr7g0219021 43.421 76 43 0 206 281 41 116 1.10e-16 77.8
Msa0017120 MtrunA17_Chr7g0219021 40.244 82 48 1 115 195 41 122 1.15e-14 72.0
Msa0017120 MtrunA17_Chr4g0045221 27.933 179 121 3 116 286 118 296 2.01e-16 79.0
Msa0017120 MtrunA17_Chr3g0121631 45.679 81 43 1 206 286 37 116 2.23e-16 74.3
Msa0017120 MtrunA17_Chr3g0121631 35.366 82 52 1 114 195 36 116 5.32e-11 59.7
Msa0017120 MtrunA17_Chr2g0278661 40.506 79 47 0 204 282 6 84 2.68e-16 76.6
Msa0017120 MtrunA17_Chr3g0119311 43.421 76 43 0 206 281 37 112 3.17e-16 73.9
Msa0017120 MtrunA17_Chr3g0119311 37.805 82 50 1 114 194 36 117 5.38e-14 67.8
Msa0017120 MtrunA17_Chr1g0153871 28.736 174 121 2 116 286 99 272 1.69e-15 76.3
Msa0017120 MtrunA17_Chr1g0153871 26.344 186 115 5 112 282 188 366 7.76e-11 62.4
Msa0017120 MtrunA17_Chr2g0288251 28.205 195 115 4 105 284 51 235 1.89e-15 75.9
Msa0017120 MtrunA17_Chr4g0070231 28.313 166 113 2 116 281 48 207 3.39e-15 75.1
Msa0017120 MtrunA17_Chr4g0061451 40.964 83 48 1 114 196 42 123 8.34e-15 72.8
Msa0017120 MtrunA17_Chr4g0061451 38.961 77 47 0 206 282 43 119 4.14e-14 70.9
Msa0017120 MtrunA17_Chr7g0265341 29.101 189 116 6 111 284 245 430 1.48e-14 73.6
Msa0017120 MtrunA17_Chr7g0265341 28.235 170 119 3 116 284 160 327 2.75e-13 70.1
Msa0017120 MtrunA17_Chr1g0179701 28.902 173 120 3 113 284 149 319 1.55e-14 73.6
Msa0017120 MtrunA17_Chr1g0179701 27.368 190 124 6 106 284 232 418 5.61e-13 68.9
Msa0017120 MtrunA17_Chr3g0139111 28.313 166 113 2 116 281 62 221 2.11e-14 72.8
Msa0017120 MtrunA17_Chr1g0212611 29.480 173 117 4 111 281 217 386 4.23e-14 72.0
Msa0017120 MtrunA17_Chr7g0266751 42.857 84 46 1 205 286 32 115 6.35e-14 67.8
Msa0017120 MtrunA17_Chr1g0190211 39.241 79 48 0 200 278 127 205 2.22e-13 68.2
Msa0017120 MtrunA17_Chr3g0086861 37.647 85 52 1 113 197 43 126 2.34e-13 69.7
Msa0017120 MtrunA17_Chr3g0086861 39.024 82 48 1 201 282 42 121 5.49e-12 65.9
Msa0017120 MtrunA17_Chr3g0133651 28.495 186 118 6 110 286 90 269 3.72e-13 69.3
Msa0017120 MtrunA17_Chr3g0133651 25.967 181 114 4 116 282 189 363 4.01e-11 63.2
Msa0017120 MtrunA17_Chr8g0344491 26.471 170 119 2 112 281 60 223 6.91e-13 68.2
Msa0017120 MtrunA17_Chr8g0383661 25.000 200 125 4 97 279 186 377 1.21e-12 67.8
Msa0017120 MtrunA17_Chr6g0465751 25.904 166 117 3 114 278 25 185 1.80e-12 67.4
Msa0017120 MtrunA17_Chr1g0210241 34.177 79 52 0 204 282 6 84 2.10e-12 65.9
Msa0017120 MtrunA17_Chr5g0447761 28.804 184 105 4 115 281 7 181 2.33e-12 67.0
Msa0017120 MtrunA17_Chr7g0219031 36.842 76 48 0 193 268 28 103 2.87e-12 62.4
Msa0017120 MtrunA17_Chr5g0402191 31.250 144 90 4 115 255 5 142 2.97e-12 66.2
Msa0017120 MtrunA17_Chr6g0466501 26.220 164 115 3 116 278 27 185 3.89e-12 66.2
Msa0017120 MtrunA17_Chr3g0120721 26.857 175 117 3 115 285 19 186 5.48e-12 65.5
Msa0017120 MtrunA17_Chr3g0101061 30.601 183 103 6 115 281 41 215 5.48e-12 65.9
Msa0017120 MtrunA17_Chr8g0375101 30.556 144 91 4 115 255 5 142 1.02e-11 64.7
Msa0017120 MtrunA17_Chr4g0018581 42.667 75 43 0 207 281 453 527 1.17e-11 65.1
Msa0017120 MtrunA17_Chr3g0129451 23.451 226 123 5 97 279 199 417 1.80e-11 64.3
Msa0017120 MtrunA17_Chr3g0134141 31.868 182 109 3 116 284 205 384 2.45e-11 63.9
Msa0017120 MtrunA17_Chr2g0290191 26.667 180 116 4 115 281 5 181 3.25e-11 63.5
Msa0017120 MtrunA17_Chr6g0449481 23.223 211 147 4 80 286 15 214 3.86e-11 63.2
Msa0017120 MtrunA17_Chr1g0201001 34.884 86 55 1 201 285 24 109 8.99e-11 62.4
Msa0017120 MtrunA17_Chr4g0068631 25.989 177 121 5 115 285 89 261 9.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017120 AT1G60000.1 66.667 198 62 2 89 285 63 257 1.24e-92 275
Msa0017120 AT5G50250.1 42.308 208 101 3 93 282 78 284 2.49e-48 162
Msa0017120 AT5G50250.1 43.902 82 46 0 111 192 204 285 1.21e-15 75.9
Msa0017120 AT5G50250.1 39.535 86 52 0 201 286 109 194 4.44e-12 65.5
Msa0017120 AT2G37220.1 41.146 192 91 2 115 284 92 283 1.72e-44 152
Msa0017120 AT2G37220.1 38.554 83 51 0 114 196 204 286 4.10e-13 68.6
Msa0017120 AT4G24770.1 44.186 172 91 2 115 282 151 321 1.95e-44 154
Msa0017120 AT4G24770.1 47.561 82 43 0 115 196 245 326 1.30e-19 87.4
Msa0017120 AT4G24770.1 43.023 86 49 0 201 286 146 231 2.29e-13 69.7
Msa0017120 AT4G24770.2 44.186 172 91 2 115 282 151 321 1.95e-44 154
Msa0017120 AT4G24770.2 47.561 82 43 0 115 196 245 326 1.30e-19 87.4
Msa0017120 AT4G24770.2 43.023 86 49 0 201 286 146 231 2.29e-13 69.7
Msa0017120 AT3G52380.1 37.989 179 99 1 115 281 117 295 7.24e-42 147
Msa0017120 AT3G52380.1 40.244 82 49 0 204 285 115 196 3.67e-14 72.0
Msa0017120 AT3G52150.2 40.113 177 96 1 115 281 77 253 1.47e-41 144
Msa0017120 AT3G52150.1 40.113 177 96 1 115 281 77 253 1.47e-41 144
Msa0017120 AT2G35410.1 35.514 214 115 7 79 280 70 272 3.15e-31 118
Msa0017120 AT1G01080.1 35.227 176 100 3 116 278 110 284 6.25e-29 112
Msa0017120 AT1G01080.3 34.911 169 97 2 116 271 110 278 5.46e-28 109
Msa0017120 AT1G01080.2 35.028 177 100 4 116 278 110 285 8.08e-28 109
Msa0017120 AT4G09040.1 31.551 187 119 4 105 285 85 268 2.08e-19 86.7
Msa0017120 AT4G09040.2 31.111 180 115 4 112 285 32 208 2.91e-19 85.1
Msa0017120 AT3G53460.1 47.222 108 51 2 94 196 74 180 1.21e-18 85.1
Msa0017120 AT3G53460.1 41.772 79 46 0 206 284 258 336 4.55e-16 77.8
Msa0017120 AT3G53460.1 39.759 83 50 0 114 196 257 339 2.38e-13 69.7
Msa0017120 AT3G53460.1 46.753 77 41 0 203 279 97 173 7.31e-12 65.5
Msa0017120 AT3G53460.3 47.222 108 51 2 94 196 74 180 1.21e-18 85.1
Msa0017120 AT3G53460.3 41.772 79 46 0 206 284 258 336 4.55e-16 77.8
Msa0017120 AT3G53460.3 39.759 83 50 0 114 196 257 339 2.38e-13 69.7
Msa0017120 AT3G53460.3 46.753 77 41 0 203 279 97 173 7.31e-12 65.5
Msa0017120 AT3G53460.2 47.222 108 51 2 94 196 74 180 1.21e-18 85.1
Msa0017120 AT3G53460.2 41.772 79 46 0 206 284 258 336 4.55e-16 77.8
Msa0017120 AT3G53460.2 39.759 83 50 0 114 196 257 339 2.38e-13 69.7
Msa0017120 AT3G53460.2 46.753 77 41 0 203 279 97 173 7.31e-12 65.5
Msa0017120 AT5G19350.2 30.270 185 122 4 105 286 18 198 1.22e-18 85.5
Msa0017120 AT5G19350.1 30.270 185 122 4 105 286 18 198 1.45e-18 85.5
Msa0017120 AT3G26420.1 41.975 81 47 0 202 282 4 84 7.27e-18 81.3
Msa0017120 AT4G39260.3 39.535 86 52 0 201 286 2 87 1.67e-17 76.3
Msa0017120 AT1G11650.1 28.415 183 108 4 116 285 64 236 2.32e-17 80.9
Msa0017120 AT4G39260.2 40.244 82 49 0 201 282 2 83 3.82e-17 76.3
Msa0017120 AT4G13850.4 45.679 81 44 0 206 286 36 116 4.66e-17 76.3
Msa0017120 AT4G13850.4 41.975 81 46 1 114 193 35 115 2.29e-12 63.5
Msa0017120 AT4G13850.3 45.679 81 44 0 206 286 36 116 5.15e-17 76.6
Msa0017120 AT4G13850.3 40.000 85 50 1 114 198 35 118 1.36e-12 64.3
Msa0017120 AT4G13850.2 45.679 81 44 0 206 286 36 116 6.38e-17 76.6
Msa0017120 AT4G13850.2 40.000 85 50 1 114 198 35 118 1.65e-12 64.3
Msa0017120 AT4G13850.1 45.679 81 44 0 206 286 36 116 7.16e-17 76.6
Msa0017120 AT4G13850.1 40.000 85 50 1 114 198 35 118 1.82e-12 64.3
Msa0017120 AT3G23830.2 50.000 76 38 0 206 281 36 111 7.86e-17 75.9
Msa0017120 AT3G23830.2 41.558 77 45 0 114 190 35 111 7.54e-15 70.5
Msa0017120 AT3G23830.1 50.000 76 38 0 206 281 36 111 7.86e-17 75.9
Msa0017120 AT3G23830.1 41.558 77 45 0 114 190 35 111 7.54e-15 70.5
Msa0017120 AT5G54900.1 27.835 194 136 3 97 286 43 236 9.28e-17 80.1
Msa0017120 AT5G54900.1 26.923 182 112 6 116 282 156 331 6.40e-12 65.9
Msa0017120 AT1G11650.2 29.609 179 111 5 116 285 64 236 1.05e-16 80.1
Msa0017120 AT4G39260.1 40.244 82 49 0 201 282 2 83 1.06e-16 76.3
Msa0017120 AT4G00830.2 28.444 225 140 7 69 286 71 281 1.72e-16 79.7
Msa0017120 AT4G00830.2 28.652 178 118 6 111 282 193 367 7.77e-11 62.8
Msa0017120 AT4G00830.1 28.444 225 140 7 69 286 71 281 1.72e-16 79.7
Msa0017120 AT4G00830.1 28.652 178 118 6 111 282 193 367 7.77e-11 62.8
Msa0017120 AT4G00830.6 28.444 225 140 7 69 286 71 281 1.72e-16 79.7
Msa0017120 AT4G00830.6 28.652 178 118 6 111 282 193 367 7.77e-11 62.8
Msa0017120 AT2G21660.2 39.506 81 49 0 202 282 5 85 2.14e-16 75.1
Msa0017120 AT2G21660.1 39.506 81 49 0 202 282 5 85 3.10e-16 75.1
Msa0017120 AT3G53460.4 41.772 79 46 0 206 284 279 357 5.58e-16 77.4
Msa0017120 AT3G53460.4 39.535 129 51 3 94 196 74 201 1.01e-14 73.9
Msa0017120 AT3G53460.4 39.759 83 50 0 114 196 278 360 3.07e-13 69.7
Msa0017120 AT4G00830.3 27.803 223 136 6 69 286 71 273 6.06e-16 78.2
Msa0017120 AT4G00830.5 27.803 223 136 6 69 286 71 273 6.06e-16 78.2
Msa0017120 AT5G40490.1 26.415 212 143 4 76 285 10 210 7.53e-16 77.4
Msa0017120 AT3G08000.1 44.737 76 42 0 206 281 42 117 9.47e-16 73.2
Msa0017120 AT3G08000.1 36.842 76 48 0 115 190 42 117 7.05e-11 59.7
Msa0017120 AT3G14100.1 30.120 166 110 3 116 281 61 220 1.64e-15 76.6
Msa0017120 AT1G54080.1 28.743 167 111 4 116 281 65 224 3.30e-15 75.5
Msa0017120 AT3G19130.1 29.444 180 122 4 111 286 106 284 9.67e-15 74.3
Msa0017120 AT4G13860.1 45.333 75 41 0 206 280 4 78 1.04e-14 68.6
Msa0017120 AT5G59865.1 43.210 81 46 0 206 286 27 107 1.06e-14 69.3
Msa0017120 AT2G18510.1 29.730 185 125 2 101 284 12 192 1.31e-14 73.6
Msa0017120 AT2G23350.1 32.474 194 114 4 105 284 216 406 1.96e-14 73.6
Msa0017120 AT4G27000.1 28.902 173 120 2 116 285 82 254 2.49e-14 73.2
Msa0017120 AT2G36660.1 29.032 186 113 5 114 284 201 382 3.96e-14 72.8
Msa0017120 AT1G17370.1 27.711 166 114 2 116 281 56 215 7.74e-14 71.6
Msa0017120 AT1G17370.2 27.711 166 114 2 116 281 56 215 8.27e-14 71.6
Msa0017120 AT5G61030.2 40.789 76 45 0 206 281 41 116 9.06e-14 70.9
Msa0017120 AT5G61030.2 40.000 80 48 0 112 191 38 117 1.95e-13 69.7
Msa0017120 AT5G61030.1 40.789 76 45 0 206 281 41 116 9.06e-14 70.9
Msa0017120 AT5G61030.1 40.000 80 48 0 112 191 38 117 1.95e-13 69.7
Msa0017120 AT1G47500.2 27.119 177 123 4 116 286 105 281 1.16e-13 70.5
Msa0017120 AT3G16380.1 27.895 190 109 5 114 284 202 382 2.30e-13 70.5
Msa0017120 AT3G16380.1 30.508 177 116 4 112 284 107 280 3.38e-12 67.0
Msa0017120 AT1G54080.2 28.070 171 111 5 116 281 65 228 2.52e-13 70.1
Msa0017120 AT5G40490.2 27.439 164 109 5 127 285 35 193 2.73e-13 70.1
Msa0017120 AT4G34110.1 26.554 177 123 4 103 278 26 196 3.31e-13 70.1
Msa0017120 AT4G34110.1 29.570 186 112 5 114 284 215 396 6.44e-13 69.3
Msa0017120 AT4G34110.1 27.647 170 120 3 116 284 126 293 4.89e-12 66.6
Msa0017120 AT1G47490.2 25.989 177 125 4 116 286 103 279 4.38e-13 68.6
Msa0017120 AT1G47500.1 27.119 177 123 4 116 286 105 281 6.15e-13 68.9
Msa0017120 AT4G39260.4 38.806 67 41 0 201 267 2 68 7.16e-13 64.3
Msa0017120 AT1G22760.1 29.348 184 115 4 114 284 229 410 1.18e-12 68.6
Msa0017120 AT3G04500.1 39.241 79 48 0 200 278 132 210 1.25e-12 66.6
Msa0017120 AT5G06210.1 38.272 81 50 0 206 286 35 115 1.75e-12 64.3
Msa0017120 AT1G49600.3 27.778 180 125 4 111 286 117 295 1.79e-12 67.8
Msa0017120 AT1G49600.2 27.778 180 125 4 111 286 117 295 1.79e-12 67.8
Msa0017120 AT1G47490.1 25.989 177 125 4 116 286 103 279 2.53e-12 67.0
Msa0017120 AT4G14300.1 30.270 185 105 6 115 281 7 185 2.62e-12 67.0
Msa0017120 AT4G14300.2 30.270 185 105 6 115 281 7 185 2.62e-12 67.0
Msa0017120 AT4G36960.1 28.736 174 111 6 115 284 4 168 2.76e-12 66.6
Msa0017120 AT4G36960.2 28.736 174 111 6 115 284 4 168 2.76e-12 66.6
Msa0017120 AT1G74230.1 40.260 77 45 1 114 190 34 109 3.15e-12 65.9
Msa0017120 AT1G74230.1 38.158 76 46 1 206 281 35 109 6.69e-11 62.0
Msa0017120 AT1G49760.1 30.159 189 107 4 114 284 224 405 3.16e-12 67.0
Msa0017120 AT1G49760.2 30.159 189 107 4 114 284 224 405 3.16e-12 67.0
Msa0017120 AT3G13224.3 27.222 180 114 4 115 286 11 181 3.22e-12 66.6
Msa0017120 AT1G49600.1 27.778 180 125 4 111 286 117 295 3.71e-12 66.6
Msa0017120 AT3G13224.2 27.222 180 114 4 115 286 20 190 3.88e-12 66.2
Msa0017120 AT3G13224.1 29.114 158 95 4 115 264 20 168 4.18e-12 65.1
Msa0017120 AT5G55550.2 27.807 187 107 7 115 281 7 185 1.38e-11 65.1
Msa0017120 AT5G55550.3 27.807 187 107 7 115 281 7 185 1.38e-11 65.1
Msa0017120 AT5G55550.6 27.807 187 107 7 115 281 7 185 1.38e-11 65.1
Msa0017120 AT5G55550.11 27.807 187 107 7 115 281 7 185 1.38e-11 65.1
Msa0017120 AT5G47620.1 28.814 177 114 5 115 281 7 181 1.40e-11 64.7
Msa0017120 AT5G47620.2 28.814 177 114 5 115 281 7 181 1.40e-11 64.7
Msa0017120 AT5G47620.5 28.814 177 114 5 115 281 7 181 1.40e-11 64.7
Msa0017120 AT5G55550.5 27.807 187 107 7 115 281 7 185 1.68e-11 64.7
Msa0017120 AT5G55550.4 27.807 187 107 7 115 281 7 185 1.68e-11 64.7
Msa0017120 AT5G55550.9 27.807 187 107 7 115 281 7 185 1.68e-11 64.7
Msa0017120 AT5G55550.7 27.807 187 107 7 115 281 7 185 1.68e-11 64.7
Msa0017120 AT5G55550.1 27.807 187 107 7 115 281 7 185 1.68e-11 64.7
Msa0017120 AT1G71770.1 28.796 191 115 4 110 284 235 420 2.47e-11 64.3
Msa0017120 AT1G71770.2 28.796 191 115 4 110 284 235 420 2.47e-11 64.3
Msa0017120 AT4G26650.1 26.761 213 114 9 92 281 4 197 6.31e-11 62.8
Msa0017120 AT1G18630.1 41.772 79 46 0 203 281 34 112 8.85e-11 59.7
Msa0017120 AT4G00830.4 26.549 226 143 8 69 286 71 281 9.34e-11 62.4

Find 93 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTGTACTCAGTTTC+AGG 0.198175 1_1:-28378382 None:intergenic
GGCATCCATTTCTGCTTTAT+TGG 0.203256 1_1:-28378542 None:intergenic
GCCATAGCCACGAGACTTTC+CGG 0.218687 1_1:-28378506 None:intergenic
ACTAGGACTAAGCTTTATTT+TGG 0.251905 1_1:+28376931 Msa0017120:CDS
GTCAGCGTATCTTATGAAAA+TGG 0.269547 1_1:-28379072 None:intergenic
TAACACAACAAAATATCATT+TGG 0.295974 1_1:-28379095 None:intergenic
GTTGATAGTGCACTACTTGC+AGG 0.299607 1_1:+28376970 Msa0017120:CDS
TCAGGATACAATGGTTCTTT+TGG 0.300465 1_1:-28378364 None:intergenic
CAAGAACATGGAACTGTTGT+TGG 0.308779 1_1:+28378457 Msa0017120:CDS
ATATGAAACTTTACACCTTT+AGG 0.314042 1_1:-28379233 None:intergenic
GCAACAGCAACAGAAATTCT+AGG 0.317781 1_1:-28376778 None:intergenic
CAACAGTTTCACACAAGTTA+TGG 0.334238 1_1:+28376752 Msa0017120:CDS
GAAGAAGAGAAGGAGAATAT+TGG 0.340088 1_1:+28376883 Msa0017120:CDS
CCATCCCCTCCTCATTGCTT+TGG 0.352618 1_1:-28378968 None:intergenic
TCAGTGGAACCTTTGTCTAT+TGG 0.359656 1_1:+28376727 Msa0017120:CDS
AGTTCATGGGGCGAACTTTA+CGG 0.364612 1_1:+28378317 Msa0017120:CDS
GTTCATGGGGCGAACTTTAC+GGG 0.370855 1_1:+28378318 Msa0017120:CDS
AACACAACAAAATATCATTT+GGG 0.387457 1_1:-28379094 None:intergenic
CTATGCCAATAAAGCAGAAA+TGG 0.389179 1_1:+28378537 Msa0017120:CDS
CCACATTATCCATGATTGTA+AGG 0.390696 1_1:-28378567 None:intergenic
AGTGCACTATCAACACTATA+AGG 0.401443 1_1:-28376961 None:intergenic
GTGTTATATGATGGCGAAAC+CGG 0.401723 1_1:+28378487 Msa0017120:CDS
AACAACTTCTCAGGAGTTCA+TGG 0.409783 1_1:+28378303 Msa0017120:intron
GCAGGGCTAATTGAGGAGTA+TGG 0.431550 1_1:+28376988 Msa0017120:CDS
AGAAAAGGTTGCAGTGGAAG+AGG 0.436244 1_1:+28376834 Msa0017120:CDS
ACCGGAAAGTCTCGTGGCTA+TGG 0.439880 1_1:+28378505 Msa0017120:CDS
AAAGCTCATAAATATTCAAC+AGG 0.455957 1_1:+28378943 Msa0017120:three_prime_UTR
TGTTGCTGTTGCACAGGAAG+AGG 0.459809 1_1:+28376789 Msa0017120:CDS
TGTGCACTTCAGGAACTAGA+AGG 0.467512 1_1:+28378857 Msa0017120:intron
GGATGCCGCCCTTACAATCA+TGG 0.469351 1_1:+28378558 Msa0017120:CDS
AACAACATGGCTACTGCAGC+AGG 0.474982 1_1:+28376592 Msa0017120:exon
AGTGCATCATGGTCGGTTCA+TGG 0.475581 1_1:-28378991 None:intergenic
AGATACAAACATGCGGTTTG+AGG 0.478982 1_1:-28376689 None:intergenic
CCGAACATTGCGAGTAAGCT+TGG 0.480659 1_1:+28378880 Msa0017120:CDS
AATAAGTAAGATGTGATGAG+AGG 0.487271 1_1:-28376512 None:intergenic
TAAAACTAAAGTGCATAAGT+TGG 0.498422 1_1:-28376547 None:intergenic
CATTTCTGCTTTATTGGCAT+AGG 0.501951 1_1:-28378536 None:intergenic
AATTTCTGTTGCTGTTGCAC+AGG 0.504166 1_1:+28376783 Msa0017120:CDS
CATGGCTACTGCAGCAGGCA+TGG 0.506381 1_1:+28376597 Msa0017120:exon
TCAGCGTATCTTATGAAAAT+GGG 0.509450 1_1:-28379071 None:intergenic
GAAGAGAAGGAGAATATTGG+AGG 0.509949 1_1:+28376886 Msa0017120:CDS
CAGTAATTCAAAATCTTGAC+GGG 0.510605 1_1:+28378206 Msa0017120:CDS
GCAGTAATTCAAAATCTTGA+CGG 0.511117 1_1:+28378205 Msa0017120:CDS
GCTCAAGGAAAACGTTCATA+AGG 0.515842 1_1:+28378902 Msa0017120:CDS
TGAAAATGAACTTCTCATCA+AGG 0.519261 1_1:-28379021 None:intergenic
AACAGTTCCATGTTCTTGAA+AGG 0.519477 1_1:-28378452 None:intergenic
GGCTGTTGAGGATGAAGAAA+AGG 0.529042 1_1:+28376819 Msa0017120:CDS
TTGATATTTGTCATTTCACT+AGG 0.529510 1_1:-28379256 None:intergenic
GTTCTTTATGACAGAGACAC+TGG 0.531305 1_1:+28378130 Msa0017120:CDS
CCAAAGCAATGAGGAGGGGA+TGG 0.540890 1_1:+28378968 Msa0017120:three_prime_UTR
CAGTAGCCATGTTGTTGTGA+TGG 0.541710 1_1:-28376585 None:intergenic
CCAAGCTTACTCGCAATGTT+CGG 0.544982 1_1:-28378880 None:intergenic
ATGAAGTATTAAGCACCTAA+AGG 0.546263 1_1:+28379218 Msa0017120:three_prime_UTR
ATAAGTAAGATGTGATGAGA+GGG 0.554891 1_1:-28376511 None:intergenic
ACACAAGCCTTTCAAGAACA+TGG 0.556072 1_1:+28378445 Msa0017120:CDS
AAGAGAAGGAGAATATTGGA+GGG 0.557746 1_1:+28376887 Msa0017120:CDS
TGCACAGGAAGAGGCTGTTG+TGG 0.557897 1_1:+28376798 Msa0017120:CDS
ATGGAACTGTTGTTGGAGCT+AGG 0.560429 1_1:+28378464 Msa0017120:CDS
CCATGTTGTTGTGATGGTAG+TGG 0.560440 1_1:-28376579 None:intergenic
ACAACTTCTCAGGAGTTCAT+GGG 0.561128 1_1:+28378304 Msa0017120:intron
TACTCAGTTTCAGGATACAA+TGG 0.561289 1_1:-28378373 None:intergenic
CTGTAGCAGAAGTAGACACT+AGG 0.564886 1_1:+28376914 Msa0017120:CDS
AGAGGCTGTTGTGGCTGTTG+AGG 0.565212 1_1:+28376807 Msa0017120:CDS
AGAGAAGGAGAATATTGGAG+GGG 0.576786 1_1:+28376888 Msa0017120:CDS
ACTACTTGCAGGGCTAATTG+AGG 0.587830 1_1:+28376981 Msa0017120:CDS
GGATGAAGAAAAGGTTGCAG+TGG 0.592205 1_1:+28376828 Msa0017120:CDS
CCTTACAATCATGGATAATG+TGG 0.592838 1_1:+28378567 Msa0017120:CDS
TGGAACTGTTGTTGGAGCTA+GGG 0.592911 1_1:+28378465 Msa0017120:CDS
GTTGTGATGGTAGTGGTGAG+TGG 0.597917 1_1:-28376572 None:intergenic
CACATTATCCATGATTGTAA+GGG 0.601934 1_1:-28378566 None:intergenic
GTTTGAGGATGTATCTAATG+AGG 0.603592 1_1:-28376674 None:intergenic
ATTATCCATGATTGTAAGGG+CGG 0.604033 1_1:-28378563 None:intergenic
TTGATAGTGCACTACTTGCA+GGG 0.604759 1_1:+28376971 Msa0017120:CDS
CAGGTGCCAAAGCAATGAGG+AGG 0.610238 1_1:+28378962 Msa0017120:three_prime_UTR
GGTGCCAAAGCAATGAGGAG+GGG 0.617161 1_1:+28378964 Msa0017120:three_prime_UTR
AAGGTGAAGCAAGTGCATCA+TGG 0.617730 1_1:-28379002 None:intergenic
TTGCGAGTAAGCTTGGCTCA+AGG 0.622339 1_1:+28378887 Msa0017120:CDS
TGAAGCAAGTGCATCATGGT+CGG 0.626727 1_1:-28378998 None:intergenic
GCGTATCTTATGAAAATGGG+AGG 0.626788 1_1:-28379068 None:intergenic
AGGTGCCAAAGCAATGAGGA+GGG 0.627571 1_1:+28378963 Msa0017120:three_prime_UTR
TGGTAGCGCAGAATTAATTG+AGG 0.634195 1_1:+28377008 Msa0017120:CDS
GGAGCTAGGGTGTTATATGA+TGG 0.637064 1_1:+28378478 Msa0017120:CDS
CCACTACCATCACAACAACA+TGG 0.640072 1_1:+28376579 Msa0017120:exon
GGCGAAACCGGAAAGTCTCG+TGG 0.640311 1_1:+28378499 Msa0017120:CDS
CGTATCTTATGAAAATGGGA+GGG 0.643154 1_1:-28379067 None:intergenic
CAACTTCTCAGGAGTTCATG+GGG 0.648152 1_1:+28378305 Msa0017120:intron
TCATAAGGTCGATAGAAACT+CGG 0.654500 1_1:+28378917 Msa0017120:exon
GATAGAAGATGAAAACAATG+AGG 0.664600 1_1:-28376620 None:intergenic
CAACAGGTGCCAAAGCAATG+AGG 0.670258 1_1:+28378959 Msa0017120:three_prime_UTR
TCTGATCACACAATCCTCAG+TGG 0.681700 1_1:+28376711 Msa0017120:CDS
ACTGTTGTACCAATAGACAA+AGG 0.689977 1_1:-28376736 None:intergenic
TGATCAGAGATACAAACATG+CGG 0.735347 1_1:-28376696 None:intergenic
AATAGACAAAGGTTCCACTG+AGG 0.798572 1_1:-28376725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTGAAAATGAAAT+CGG - chr1_1:28377164-28377183 None:intergenic 10.0%
!!! AATTTATTTTAATATTCTTC+AGG + chr1_1:28377558-28377577 Msa0017120:intron 10.0%
!! ACTTTAATGAATTGTAAATT+CGG - chr1_1:28377779-28377798 None:intergenic 15.0%
!! CAATAGATTATAAATTTAGT+TGG - chr1_1:28377831-28377850 None:intergenic 15.0%
!! ACATATTAAACTATAAAACT+TGG + chr1_1:28377930-28377949 Msa0017120:intron 15.0%
!!! TGAAGTAATTCTATTAGTTT+TGG + chr1_1:28377300-28377319 Msa0017120:intron 20.0%
!! CTTTAATGAATTGTAAATTC+GGG - chr1_1:28377778-28377797 None:intergenic 20.0%
!! TTAAAGTAACTTATCATAAG+TGG + chr1_1:28377792-28377811 Msa0017120:intron 20.0%
!! TAAAGTAACTTATCATAAGT+GGG + chr1_1:28377793-28377812 Msa0017120:intron 20.0%
!! TAAACTATAAAACTTGGTTA+TGG + chr1_1:28377936-28377955 Msa0017120:intron 20.0%
!! AAAAATAATGGCAGAAAATT+TGG - chr1_1:28378008-28378027 None:intergenic 20.0%
!!! AATGATTTGTATATGTCTTT+AGG + chr1_1:28378108-28378127 Msa0017120:intron 20.0%
!!! GTAATTGTGATTTAAAACTT+CGG + chr1_1:28378775-28378794 Msa0017120:intron 20.0%
!! AACACAACAAAATATCATTT+GGG - chr1_1:28379097-28379116 None:intergenic 20.0%
!! TAACACAACAAAATATCATT+TGG - chr1_1:28379098-28379117 None:intergenic 20.0%
! TAAAACTAAAGTGCATAAGT+TGG - chr1_1:28376550-28376569 None:intergenic 25.0%
! AATATTCATCGTTAAGAACT+AGG + chr1_1:28377054-28377073 Msa0017120:intron 25.0%
! TACTGTCTATATGATGATTT+AGG + chr1_1:28377358-28377377 Msa0017120:intron 25.0%
! TTACATGTGAGTTTATACTA+TGG - chr1_1:28377490-28377509 None:intergenic 25.0%
! TAAACATTCGATGTAATTGT+TGG - chr1_1:28377868-28377887 None:intergenic 25.0%
! GGATGTATACTGAAAAATAA+TGG - chr1_1:28378020-28378039 None:intergenic 25.0%
! ATCATACAATACAAGTTTGA+GGG - chr1_1:28378041-28378060 None:intergenic 25.0%
! TATCATACAATACAAGTTTG+AGG - chr1_1:28378042-28378061 None:intergenic 25.0%
! CAAACTTGTATTGTATGATA+TGG + chr1_1:28378042-28378061 Msa0017120:intron 25.0%
! ATTAACATTACTGTAACTCA+AGG - chr1_1:28378091-28378110 None:intergenic 25.0%
! AAAGCTCATAAATATTCAAC+AGG + chr1_1:28378943-28378962 Msa0017120:three_prime_UTR 25.0%
!! AAGTTCATTTTCATTTCTTG+TGG + chr1_1:28379031-28379050 Msa0017120:three_prime_UTR 25.0%
! ATATGAAACTTTACACCTTT+AGG - chr1_1:28379236-28379255 None:intergenic 25.0%
ATAAGTAAGATGTGATGAGA+GGG - chr1_1:28376514-28376533 None:intergenic 30.0%
AATAAGTAAGATGTGATGAG+AGG - chr1_1:28376515-28376534 None:intergenic 30.0%
GATAGAAGATGAAAACAATG+AGG - chr1_1:28376623-28376642 None:intergenic 30.0%
! TGTATCTAATGAGGAGTTTT+TGG - chr1_1:28376668-28376687 None:intergenic 30.0%
AGAAGAAAAAGAAGAAGAGA+AGG + chr1_1:28376873-28376892 Msa0017120:CDS 30.0%
!!! ACTAGGACTAAGCTTTATTT+TGG + chr1_1:28376931-28376950 Msa0017120:CDS 30.0%
!! TGATGATGGTGAAAATTAAC+AGG - chr1_1:28377677-28377696 None:intergenic 30.0%
TGTCCCAAATAACTCATTAT+TGG + chr1_1:28377723-28377742 Msa0017120:intron 30.0%
GTCCCAAATAACTCATTATT+GGG + chr1_1:28377724-28377743 Msa0017120:intron 30.0%
TCCCAAATAACTCATTATTG+GGG + chr1_1:28377725-28377744 Msa0017120:intron 30.0%
CAAGGAATGAAACATAAACA+TGG - chr1_1:28378073-28378092 None:intergenic 30.0%
GCAGTAATTCAAAATCTTGA+CGG + chr1_1:28378205-28378224 Msa0017120:CDS 30.0%
CAGTAATTCAAAATCTTGAC+GGG + chr1_1:28378206-28378225 Msa0017120:CDS 30.0%
TTGTAAATGAACAACTTCTC+AGG + chr1_1:28378294-28378313 Msa0017120:intron 30.0%
!!! TACAATGGTTCTTTTGGTTT+AGG - chr1_1:28378361-28378380 None:intergenic 30.0%
CACATTATCCATGATTGTAA+GGG - chr1_1:28378569-28378588 None:intergenic 30.0%
!!! GCACAACGAGTTTTAAAAAA+CGG + chr1_1:28378621-28378640 Msa0017120:intron 30.0%
GCAATTATATGCAAATGTCA+AGG + chr1_1:28378738-28378757 Msa0017120:intron 30.0%
TGAAAATGAACTTCTCATCA+AGG - chr1_1:28379024-28379043 None:intergenic 30.0%
TCAGCGTATCTTATGAAAAT+GGG - chr1_1:28379074-28379093 None:intergenic 30.0%
!!! ATTTTAGCTAGTGCTAACAT+TGG + chr1_1:28379120-28379139 Msa0017120:three_prime_UTR 30.0%
! ATGAAGTATTAAGCACCTAA+AGG + chr1_1:28379218-28379237 Msa0017120:three_prime_UTR 30.0%
GTTTGAGGATGTATCTAATG+AGG - chr1_1:28376677-28376696 None:intergenic 35.0%
TGATCAGAGATACAAACATG+CGG - chr1_1:28376699-28376718 None:intergenic 35.0%
ACTGTTGTACCAATAGACAA+AGG - chr1_1:28376739-28376758 None:intergenic 35.0%
CAACAGTTTCACACAAGTTA+TGG + chr1_1:28376752-28376771 Msa0017120:CDS 35.0%
GAAGAAGAGAAGGAGAATAT+TGG + chr1_1:28376883-28376902 Msa0017120:CDS 35.0%
AAGAGAAGGAGAATATTGGA+GGG + chr1_1:28376887-28376906 Msa0017120:CDS 35.0%
AGTGCACTATCAACACTATA+AGG - chr1_1:28376964-28376983 None:intergenic 35.0%
TTATTTCAGACTCTGATCGA+TGG - chr1_1:28377627-28377646 None:intergenic 35.0%
GCCCCAATAATGAGTTATTT+GGG - chr1_1:28377729-28377748 None:intergenic 35.0%
AGCCCCAATAATGAGTTATT+TGG - chr1_1:28377730-28377749 None:intergenic 35.0%
ACTTGGTTATGGATAGACTT+TGG + chr1_1:28377947-28377966 Msa0017120:intron 35.0%
! TCAGGATACAATGGTTCTTT+TGG - chr1_1:28378367-28378386 None:intergenic 35.0%
TACTCAGTTTCAGGATACAA+TGG - chr1_1:28378376-28378395 None:intergenic 35.0%
AAAAGCTTGTACTCAGTTTC+AGG - chr1_1:28378385-28378404 None:intergenic 35.0%
! ACTGAGTACAAGCTTTTTGT+TGG + chr1_1:28378388-28378407 Msa0017120:CDS 35.0%
! CTGAGTACAAGCTTTTTGTT+GGG + chr1_1:28378389-28378408 Msa0017120:CDS 35.0%
AACAGTTCCATGTTCTTGAA+AGG - chr1_1:28378455-28378474 None:intergenic 35.0%
! CATTTCTGCTTTATTGGCAT+AGG - chr1_1:28378539-28378558 None:intergenic 35.0%
CTATGCCAATAAAGCAGAAA+TGG + chr1_1:28378537-28378556 Msa0017120:CDS 35.0%
ATTATCCATGATTGTAAGGG+CGG - chr1_1:28378566-28378585 None:intergenic 35.0%
CCACATTATCCATGATTGTA+AGG - chr1_1:28378570-28378589 None:intergenic 35.0%
CCTTACAATCATGGATAATG+TGG + chr1_1:28378567-28378586 Msa0017120:CDS 35.0%
TACGTTTGTGTGTGTAAACA+AGG + chr1_1:28378801-28378820 Msa0017120:intron 35.0%
! CTTTGTAATTTGTGCACTTC+AGG + chr1_1:28378847-28378866 Msa0017120:intron 35.0%
TCATAAGGTCGATAGAAACT+CGG + chr1_1:28378917-28378936 Msa0017120:exon 35.0%
CGTATCTTATGAAAATGGGA+GGG - chr1_1:28379070-28379089 None:intergenic 35.0%
GTCAGCGTATCTTATGAAAA+TGG - chr1_1:28379075-28379094 None:intergenic 35.0%
AGATACAAACATGCGGTTTG+AGG - chr1_1:28376692-28376711 None:intergenic 40.0%
AATAGACAAAGGTTCCACTG+AGG - chr1_1:28376728-28376747 None:intergenic 40.0%
TCAGTGGAACCTTTGTCTAT+TGG + chr1_1:28376727-28376746 Msa0017120:CDS 40.0%
GCAACAGCAACAGAAATTCT+AGG - chr1_1:28376781-28376800 None:intergenic 40.0%
! AATTTCTGTTGCTGTTGCAC+AGG + chr1_1:28376783-28376802 Msa0017120:CDS 40.0%
GAAGAGAAGGAGAATATTGG+AGG + chr1_1:28376886-28376905 Msa0017120:CDS 40.0%
AGAGAAGGAGAATATTGGAG+GGG + chr1_1:28376888-28376907 Msa0017120:CDS 40.0%
!! TTGATAGTGCACTACTTGCA+GGG + chr1_1:28376971-28376990 Msa0017120:CDS 40.0%
! TGGTAGCGCAGAATTAATTG+AGG + chr1_1:28377008-28377027 Msa0017120:CDS 40.0%
TTCAGATTAAATGCGCGTCT+AGG + chr1_1:28377102-28377121 Msa0017120:intron 40.0%
TCAGATTAAATGCGCGTCTA+GGG + chr1_1:28377103-28377122 Msa0017120:intron 40.0%
GAAGATTGTGTGCTATAGCT+AGG + chr1_1:28377248-28377267 Msa0017120:intron 40.0%
TTGTGTGCTATAGCTAGGAT+AGG + chr1_1:28377253-28377272 Msa0017120:intron 40.0%
AAATGAAAGCTGCAGCTAGA+AGG - chr1_1:28377384-28377403 None:intergenic 40.0%
AATAGAGTTTGCCTTGTCTC+TGG + chr1_1:28377593-28377612 Msa0017120:intron 40.0%
TGGAAATCAAACCAGAGACA+AGG - chr1_1:28377607-28377626 None:intergenic 40.0%
! GATGCAGCTGATAATGATGA+TGG - chr1_1:28377691-28377710 None:intergenic 40.0%
ATTGGGGCTTAAACTGTGAA+AGG + chr1_1:28377741-28377760 Msa0017120:intron 40.0%
TTGGGGCTTAAACTGTGAAA+GGG + chr1_1:28377742-28377761 Msa0017120:intron 40.0%
GTTCTTTATGACAGAGACAC+TGG + chr1_1:28378130-28378149 Msa0017120:CDS 40.0%
AGAGACACTGGAAAAAGTAG+AGG + chr1_1:28378142-28378161 Msa0017120:CDS 40.0%
AACAACTTCTCAGGAGTTCA+TGG + chr1_1:28378303-28378322 Msa0017120:intron 40.0%
ACAACTTCTCAGGAGTTCAT+GGG + chr1_1:28378304-28378323 Msa0017120:intron 40.0%
! CAAGCTTTTTGTTGGGAACT+TGG + chr1_1:28378396-28378415 Msa0017120:CDS 40.0%
! TTTTTGTTGGGAACTTGGCT+TGG + chr1_1:28378401-28378420 Msa0017120:CDS 40.0%
ACACAAGCCTTTCAAGAACA+TGG + chr1_1:28378445-28378464 Msa0017120:CDS 40.0%
CAAGAACATGGAACTGTTGT+TGG + chr1_1:28378457-28378476 Msa0017120:CDS 40.0%
! GTGTTATATGATGGCGAAAC+CGG + chr1_1:28378487-28378506 Msa0017120:CDS 40.0%
GGCATCCATTTCTGCTTTAT+TGG - chr1_1:28378545-28378564 None:intergenic 40.0%
!!! ACGAGTTTTAAAAAACGGCC+CGG + chr1_1:28378626-28378645 Msa0017120:intron 40.0%
GCTCAAGGAAAACGTTCATA+AGG + chr1_1:28378902-28378921 Msa0017120:CDS 40.0%
GCGTATCTTATGAAAATGGG+AGG - chr1_1:28379071-28379090 None:intergenic 40.0%
CCATGTTGTTGTGATGGTAG+TGG - chr1_1:28376582-28376601 None:intergenic 45.0%
CCACTACCATCACAACAACA+TGG + chr1_1:28376579-28376598 Msa0017120:exon 45.0%
CAGTAGCCATGTTGTTGTGA+TGG - chr1_1:28376588-28376607 None:intergenic 45.0%
TCTGATCACACAATCCTCAG+TGG + chr1_1:28376711-28376730 Msa0017120:CDS 45.0%
GGCTGTTGAGGATGAAGAAA+AGG + chr1_1:28376819-28376838 Msa0017120:CDS 45.0%
GGATGAAGAAAAGGTTGCAG+TGG + chr1_1:28376828-28376847 Msa0017120:CDS 45.0%
AGAAAAGGTTGCAGTGGAAG+AGG + chr1_1:28376834-28376853 Msa0017120:CDS 45.0%
CTGTAGCAGAAGTAGACACT+AGG + chr1_1:28376914-28376933 Msa0017120:CDS 45.0%
!! GTTGATAGTGCACTACTTGC+AGG + chr1_1:28376970-28376989 Msa0017120:CDS 45.0%
ACTACTTGCAGGGCTAATTG+AGG + chr1_1:28376981-28377000 Msa0017120:CDS 45.0%
GTCAACTAGCTATGTAGCAC+CGG + chr1_1:28377076-28377095 Msa0017120:intron 45.0%
! GCGCATTTAATCTGAAGTGC+CGG - chr1_1:28377098-28377117 None:intergenic 45.0%
!! ACATGTGTTGGTGTTGCAAG+TGG + chr1_1:28377130-28377149 Msa0017120:intron 45.0%
TGGGGCTTAAACTGTGAAAG+GGG + chr1_1:28377743-28377762 Msa0017120:intron 45.0%
CAACTTCTCAGGAGTTCATG+GGG + chr1_1:28378305-28378324 Msa0017120:intron 45.0%
AGTTCATGGGGCGAACTTTA+CGG + chr1_1:28378317-28378336 Msa0017120:CDS 45.0%
ATGGAACTGTTGTTGGAGCT+AGG + chr1_1:28378464-28378483 Msa0017120:CDS 45.0%
TGGAACTGTTGTTGGAGCTA+GGG + chr1_1:28378465-28378484 Msa0017120:CDS 45.0%
! GGAGCTAGGGTGTTATATGA+TGG + chr1_1:28378478-28378497 Msa0017120:CDS 45.0%
!!! CGAGTTTTAAAAAACGGCCC+GGG + chr1_1:28378627-28378646 Msa0017120:intron 45.0%
TGTGCACTTCAGGAACTAGA+AGG + chr1_1:28378857-28378876 Msa0017120:intron 45.0%
CCAAGCTTACTCGCAATGTT+CGG - chr1_1:28378883-28378902 None:intergenic 45.0%
TGAAGCAAGTGCATCATGGT+CGG - chr1_1:28379001-28379020 None:intergenic 45.0%
AAGGTGAAGCAAGTGCATCA+TGG - chr1_1:28379005-28379024 None:intergenic 45.0%
!! GTTGTGATGGTAGTGGTGAG+TGG - chr1_1:28376575-28376594 None:intergenic 50.0%
AACAACATGGCTACTGCAGC+AGG + chr1_1:28376592-28376611 Msa0017120:exon 50.0%
! TGTTGCTGTTGCACAGGAAG+AGG + chr1_1:28376789-28376808 Msa0017120:CDS 50.0%
GCAGGGCTAATTGAGGAGTA+TGG + chr1_1:28376988-28377007 Msa0017120:CDS 50.0%
! GTCTAGGGTTCGACATGTGT+TGG + chr1_1:28377118-28377137 Msa0017120:intron 50.0%
GTTCATGGGGCGAACTTTAC+GGG + chr1_1:28378318-28378337 Msa0017120:CDS 50.0%
TTTAAAAAACGGCCCGGGAC+TGG + chr1_1:28378632-28378651 Msa0017120:intron 50.0%
TTCACCCAAATTCCAGTCCC+GGG - chr1_1:28378647-28378666 None:intergenic 50.0%
GTTCACCCAAATTCCAGTCC+CGG - chr1_1:28378648-28378667 None:intergenic 50.0%
CCGAACATTGCGAGTAAGCT+TGG + chr1_1:28378880-28378899 Msa0017120:CDS 50.0%
TTGCGAGTAAGCTTGGCTCA+AGG + chr1_1:28378887-28378906 Msa0017120:CDS 50.0%
CAACAGGTGCCAAAGCAATG+AGG + chr1_1:28378959-28378978 Msa0017120:three_prime_UTR 50.0%
AGGTGCCAAAGCAATGAGGA+GGG + chr1_1:28378963-28378982 Msa0017120:three_prime_UTR 50.0%
! AGTGCATCATGGTCGGTTCA+TGG - chr1_1:28378994-28379013 None:intergenic 50.0%
TGCACAGGAAGAGGCTGTTG+TGG + chr1_1:28376798-28376817 Msa0017120:CDS 55.0%
AGAGGCTGTTGTGGCTGTTG+AGG + chr1_1:28376807-28376826 Msa0017120:CDS 55.0%
ACCGGAAAGTCTCGTGGCTA+TGG + chr1_1:28378505-28378524 Msa0017120:CDS 55.0%
GCCATAGCCACGAGACTTTC+CGG - chr1_1:28378509-28378528 None:intergenic 55.0%
GGATGCCGCCCTTACAATCA+TGG + chr1_1:28378558-28378577 Msa0017120:CDS 55.0%
CAGGTGCCAAAGCAATGAGG+AGG + chr1_1:28378962-28378981 Msa0017120:three_prime_UTR 55.0%
GGTGCCAAAGCAATGAGGAG+GGG + chr1_1:28378964-28378983 Msa0017120:three_prime_UTR 55.0%
CCATCCCCTCCTCATTGCTT+TGG - chr1_1:28378971-28378990 None:intergenic 55.0%
CCAAAGCAATGAGGAGGGGA+TGG + chr1_1:28378968-28378987 Msa0017120:three_prime_UTR 55.0%
CATGGCTACTGCAGCAGGCA+TGG + chr1_1:28376597-28376616 Msa0017120:exon 60.0%
GGCGAAACCGGAAAGTCTCG+TGG + chr1_1:28378499-28378518 Msa0017120:CDS 60.0%
AACGGCCCGGGACTGGAATT+TGG + chr1_1:28378639-28378658 Msa0017120:intron 60.0%
ACGGCCCGGGACTGGAATTT+GGG + chr1_1:28378640-28378659 Msa0017120:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 28376503 28379277 28376503 ID=Msa0017120;Name=Msa0017120
chr1_1 mRNA 28376503 28379277 28376503 ID=Msa0017120-mRNA-1;Parent=Msa0017120;Name=Msa0017120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|4|355|286
chr1_1 exon 28376503 28377029 28376503 ID=Msa0017120-mRNA-1:exon:9470;Parent=Msa0017120-mRNA-1
chr1_1 exon 28378130 28378231 28378130 ID=Msa0017120-mRNA-1:exon:9471;Parent=Msa0017120-mRNA-1
chr1_1 exon 28378316 28378588 28378316 ID=Msa0017120-mRNA-1:exon:9472;Parent=Msa0017120-mRNA-1
chr1_1 exon 28378869 28379277 28378869 ID=Msa0017120-mRNA-1:exon:9473;Parent=Msa0017120-mRNA-1
chr1_1 five_prime_UTR 28376503 28376597 28376503 ID=Msa0017120-mRNA-1:five_prime_utr;Parent=Msa0017120-mRNA-1
chr1_1 CDS 28376598 28377029 28376598 ID=Msa0017120-mRNA-1:cds;Parent=Msa0017120-mRNA-1
chr1_1 CDS 28378130 28378231 28378130 ID=Msa0017120-mRNA-1:cds;Parent=Msa0017120-mRNA-1
chr1_1 CDS 28378316 28378588 28378316 ID=Msa0017120-mRNA-1:cds;Parent=Msa0017120-mRNA-1
chr1_1 CDS 28378869 28378922 28378869 ID=Msa0017120-mRNA-1:cds;Parent=Msa0017120-mRNA-1
chr1_1 three_prime_UTR 28378923 28379277 28378923 ID=Msa0017120-mRNA-1:three_prime_utr;Parent=Msa0017120-mRNA-1
Gene Sequence

>Msa0017120

ATGGCTACTGCAGCAGGCATGGCCTCATTGTTTTCATCTTCTATCAACACTGTCAAATGTCTACGTTCCAAAAACTCCTCATTAGATACATCCTCAAACCGCATGTTTGTATCTCTGATCACACAATCCTCAGTGGAACCTTTGTCTATTGGTACAACAGTTTCACACAAGTTATGGTTTCCTAGAATTTCTGTTGCTGTTGCACAGGAAGAGGCTGTTGTGGCTGTTGAGGATGAAGAAAAGGTTGCAGTGGAAGAGGAAGAAAAAGAAGAAGAAGAAGAAAAAGAAGAAGAGAAGGAGAATATTGGAGGGGAAACTGTAGCAGAAGTAGACACTAGGACTAAGCTTTATTTTGGTAATTTGCCTTATAGTGTTGATAGTGCACTACTTGCAGGGCTAATTGAGGAGTATGGTAGCGCAGAATTAATTGAGGTTCTTTATGACAGAGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTGTTGAAGATTGTAATGCAGTAATTCAAAATCTTGACGGGAAAGAGTTCATGGGGCGAACTTTACGGGTGAATTTCGCTGACAAACCTAAACCAAAAGAACCATTGTATCCTGAAACTGAGTACAAGCTTTTTGTTGGGAACTTGGCTTGGACAGTAACTTCTGAGAGTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACCGGAAAGTCTCGTGGCTATGGCTTTGTTTCCTATGCCAATAAAGCAGAAATGGATGCCGCCCTTACAATCATGGATAATGTGGAACTAGAAGGCCGAACATTGCGAGTAAGCTTGGCTCAAGGAAAACGTTCATAA
Protein sequence

>Msa0017120

MATAAGMASLFSSSINTVKCLRSKNSSLDTSSNRMFVSLITQSSVEPLSIGTTVSHKLWFPRISVAVAQEEAVVAVEDEEKVAVEEEEKEEEEEKEEEKENIGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFADKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLYDGETGKSRGYGFVSYANKAEMDAALTIMDNVELEGRTLRVSLAQGKRS*