AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292070 MtrunA17_Chr2g0312531 97.375 381 10 0 1 381 38 418 0.0 763
Msa0292070 MtrunA17_Chr7g0274271 25.266 376 244 12 19 379 122 475 1.62e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292070 AT1G56000.1 67.024 373 122 1 9 381 13 384 0.0 520
Msa0292070 AT1G56000.2 65.944 323 109 1 59 381 8 329 8.05e-157 444
Msa0292070 AT1G55980.2 64.873 316 111 0 9 324 13 328 1.68e-152 433
Msa0292070 AT1G55980.1 64.873 316 111 0 9 324 153 468 7.11e-151 434
Msa0292070 AT1G55980.3 63.158 266 98 0 59 324 8 273 2.21e-123 357
Msa0292070 AT3G04650.1 28.771 358 225 12 19 368 95 430 2.07e-32 127

Find 114 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTATGTTGTCAAATTTA+AGG 0.055083 2_3:+40824945 None:intergenic
AATGACTACCACTGTCTTTA+AGG 0.063591 2_3:-40826092 Msa0292070:CDS
GTGGATTAGCAGCAGCTTTA+AGG 0.176321 2_3:-40819429 Msa0292070:CDS
CAAAATCTTGGTCAGTTTAA+AGG 0.201127 2_3:-40824092 Msa0292070:CDS
AATAGGAAAAGAACCTTCTT+TGG 0.229970 2_3:+40825838 None:intergenic
TATGTTCAGTTTCCAGTTAA+AGG 0.238069 2_3:-40821833 Msa0292070:intron
CAAGATTGACTAACCATCTA+TGG 0.238742 2_3:+40821479 None:intergenic
ACTTTAGTGTGAATTTATTC+TGG 0.274752 2_3:-40819331 Msa0292070:three_prime_UTR
CTCTATGTTGTCAAATTTAA+GGG 0.276798 2_3:+40824946 None:intergenic
AACCTCCAATATGTTACTTT+TGG 0.289480 2_3:+40819213 None:intergenic
AATAAATTCACACTAAAGTT+TGG 0.292269 2_3:+40819335 None:intergenic
AAGAGATTTGTGGGTGTTCC+AGG 0.300128 2_3:-40824328 Msa0292070:CDS
AACCACAAACCTTGATATAA+TGG 0.303119 2_3:+40818845 None:intergenic
GTCTTTAAGGTTGCTGTGTT+GGG 0.311565 2_3:-40826079 Msa0292070:CDS
AGCAAGTTTGGTGTGGGTAT+TGG 0.312552 2_3:-40824170 Msa0292070:CDS
CACTCGCTGTCTTAAGGTTT+CGG 0.315645 2_3:-40819035 Msa0292070:three_prime_UTR
TCTAATTAGTTATGGTTGAT+TGG 0.324212 2_3:-40818939 Msa0292070:intron
TGTATTATACTTAGTGTGTT+TGG 0.328576 2_3:-40819258 Msa0292070:three_prime_UTR
ATCTATGGCACCTTCAACAT+TGG 0.342290 2_3:+40819453 None:intergenic
TGCTGCTAATCCACTATCTA+TGG 0.344524 2_3:+40819438 None:intergenic
AAAATTCTAAAGTTCTAAGT+TGG 0.347059 2_3:-40821799 Msa0292070:CDS
TTAGGTGTGGAAAGCAAGTT+TGG 0.352186 2_3:-40824182 Msa0292070:intron
ACCGCGAAACATGGCCTAAC+AGG 0.355118 2_3:+40823026 None:intergenic
TGAATGGAGAAACCTTTAAC+TGG 0.370484 2_3:+40821821 None:intergenic
TTTGCACACTCGCTGTCTTA+AGG 0.384009 2_3:-40819041 Msa0292070:three_prime_UTR
TGAACTAGACGAGCCACTTC+AGG 0.384189 2_3:+40825034 None:intergenic
TTTGGAAAACACCAAAATTA+CGG 0.399770 2_3:-40819240 Msa0292070:three_prime_UTR
TGTCTTTAAGGTTGCTGTGT+TGG 0.412707 2_3:-40826080 Msa0292070:CDS
TTTCAAGAATTTCAAAGGAC+AGG 0.414179 2_3:-40821535 Msa0292070:CDS
TTCAATTATCCATTATATCA+AGG 0.415319 2_3:-40818854 Msa0292070:three_prime_UTR
ATAGGAAAAGAACCTTCTTT+GGG 0.416059 2_3:+40825839 None:intergenic
GCCATGTTTCGCGGTTATGA+TGG 0.421407 2_3:-40823018 Msa0292070:CDS
ATACTTCAACTATAAACAAC+TGG 0.425588 2_3:+40819390 None:intergenic
CTTTGGGACATGCGTCCACC+AGG 0.427017 2_3:+40825855 None:intergenic
ATCCATTATATCAAGGTTTG+TGG 0.427750 2_3:-40818847 Msa0292070:three_prime_UTR
GTCGACCAAAAGTAACATAT+TGG 0.431697 2_3:-40819218 Msa0292070:three_prime_UTR
TGTGTTAGTCCCAATGTTGA+AGG 0.442671 2_3:-40819463 Msa0292070:CDS
TCCTGTTAGGCCATGTTTCG+CGG 0.445213 2_3:-40823027 Msa0292070:CDS
GTGGCTTTGAATTGAATATG+AGG 0.446152 2_3:+40826216 None:intergenic
AACACAGAAGTCACCACATA+TGG 0.448101 2_3:+40819480 None:intergenic
TTTGAGTCTGCTAGAGGCCC+TGG 0.449558 2_3:-40825873 Msa0292070:CDS
AAATTCTAAAGTTCTAAGTT+GGG 0.454731 2_3:-40821798 Msa0292070:CDS
GCTGAATGGAGAGAAAAGTT+TGG 0.455493 2_3:-40824986 Msa0292070:CDS
GAGAAATTGTGGTCATTGAT+AGG 0.459014 2_3:-40824125 Msa0292070:CDS
TAGACTAGCCTTGGTTGAGC+GGG 0.459743 2_3:+40819143 None:intergenic
GGAAGAGTTGAATGGTTAGA+TGG 0.465164 2_3:-40824149 Msa0292070:CDS
GGACTAAGCAAGAGATTTGT+GGG 0.467979 2_3:-40824337 Msa0292070:CDS
AGAGACTATAATTGCTCAAA+CGG 0.472147 2_3:-40821608 Msa0292070:CDS
GTTGAAGGTGCCATAGATAG+TGG 0.474892 2_3:-40819448 Msa0292070:CDS
GCATCAACTCTTGCTAGAAA+TGG 0.485520 2_3:-40825912 Msa0292070:CDS
AAGGTTGCTGTGTTGGGTGG+TGG 0.487031 2_3:-40826073 Msa0292070:CDS
ATAAGAACATAGTTTCTACT+AGG 0.492921 2_3:-40824055 Msa0292070:CDS
GGCTCGTCTAGTTCAAGAAT+GGG 0.493742 2_3:-40825026 Msa0292070:CDS
TGAATAGAGAGAGAAAGAGC+TGG 0.495050 2_3:+40826157 None:intergenic
CAGCTATAGTAGACTAGCCT+TGG 0.495721 2_3:+40819134 None:intergenic
TTATTCAATGTAACGTCTGA+GGG 0.498342 2_3:+40821574 None:intergenic
TAAATTTGACAACATAGAGC+AGG 0.504476 2_3:-40824942 Msa0292070:intron
TTGCATATAGAATTCATGCC+TGG 0.504523 2_3:+40824310 None:intergenic
CGAGGGGTCTCCTAGCTGAA+TGG 0.506106 2_3:-40825000 Msa0292070:CDS
TACTGTGATAGCAGGAAGCC+AGG 0.508981 2_3:-40821773 Msa0292070:CDS
CTCGGTTAGCAAGCCTGAAG+TGG 0.510458 2_3:-40825047 Msa0292070:CDS
GAGACTATAATTGCTCAAAC+GGG 0.513738 2_3:-40821607 Msa0292070:CDS
AGGACTAAGCAAGAGATTTG+TGG 0.517881 2_3:-40824338 Msa0292070:CDS
TGGCTCGTCTAGTTCAAGAA+TGG 0.519455 2_3:-40825027 Msa0292070:CDS
TCTATGGCACCTTCAACATT+GGG 0.520411 2_3:+40819454 None:intergenic
AGACGTTACATTGAATAAAG+TGG 0.521551 2_3:-40821569 Msa0292070:CDS
TCTTGGGCAATGCTAGCAGC+TGG 0.522353 2_3:+40819538 None:intergenic
GGTGTGGATGGACAAAATCT+TGG 0.523630 2_3:-40824104 Msa0292070:CDS
ACCATGAGACTATCAAGAAA+AGG 0.535051 2_3:-40818916 Msa0292070:three_prime_UTR
TTCAAGAATTTCAAAGGACA+GGG 0.535247 2_3:-40821534 Msa0292070:CDS
TCTAGAGAGAAAACTGAAGA+TGG 0.535566 2_3:-40825106 Msa0292070:intron
AGCTGCTAGCATTGCCCAAG+AGG 0.542908 2_3:-40819536 Msa0292070:CDS
GGTTAGATGGTGAGAAATTG+TGG 0.552649 2_3:-40824136 Msa0292070:CDS
AGCTGCACAATCTTCCTGTT+AGG 0.554777 2_3:-40823040 Msa0292070:CDS
AGCCAGGCCGTTCTACTACA+AGG 0.555450 2_3:-40821757 Msa0292070:intron
TTTATTCAATGTAACGTCTG+AGG 0.561529 2_3:+40821573 None:intergenic
GCCATCATAACCGCGAAACA+TGG 0.563610 2_3:+40823017 None:intergenic
AGAGAAAACTGAAGATGGCA+AGG 0.564821 2_3:-40825101 Msa0292070:CDS
ACAGGACGGCTGCCACCACT+TGG 0.572673 2_3:-40824020 Msa0292070:intron
GTTTAAAGGACTTGTTGCAT+CGG 0.574643 2_3:-40824078 Msa0292070:CDS
AAGATTGACTAACCATCTAT+GGG 0.576813 2_3:+40821480 None:intergenic
ACTAGGATTGCAGATGTCAC+AGG 0.578838 2_3:-40824038 Msa0292070:CDS
GTTGGGCTTACTGTGATAGC+AGG 0.579207 2_3:-40821781 Msa0292070:CDS
TGGGTATTGGAAGAGTTGAA+TGG 0.580213 2_3:-40824157 Msa0292070:CDS
GATTGCTCCCCGCTCAACCA+AGG 0.585314 2_3:-40819151 Msa0292070:three_prime_UTR
AGTTCAAGAATGGGAGTCGA+GGG 0.586947 2_3:-40825017 Msa0292070:CDS
ATGAATACCTTGTAGTAGAA+CGG 0.588295 2_3:+40821750 None:intergenic
TTAGAAATGATAATGTTCAA+AGG 0.590162 2_3:+40819362 None:intergenic
GTGGACGCATGTCCCAAAGA+AGG 0.590847 2_3:-40825851 Msa0292070:intron
AACAAGAGACTAGCCATATG+TGG 0.592914 2_3:-40819493 Msa0292070:CDS
TTTAAGGTTGCTGTGTTGGG+TGG 0.593128 2_3:-40826076 Msa0292070:CDS
TACCTTGTAGTAGAACGGCC+TGG 0.593327 2_3:+40821755 None:intergenic
GACCAAAAGTAACATATTGG+AGG 0.595543 2_3:-40819215 Msa0292070:three_prime_UTR
CTAATATTGTAGAATATGCA+TGG 0.598188 2_3:-40818801 Msa0292070:three_prime_UTR
ACACTCTTTGAGTCTGCTAG+AGG 0.609919 2_3:-40825879 Msa0292070:CDS
TGTGGAAAGCAAGTTTGGTG+TGG 0.614933 2_3:-40824177 Msa0292070:CDS
TAGTTCAAGAATGGGAGTCG+AGG 0.616885 2_3:-40825018 Msa0292070:CDS
TGGTCATTGATAGGTGTGGA+TGG 0.617485 2_3:-40824116 Msa0292070:CDS
GTAGACTAGCCTTGGTTGAG+CGG 0.617532 2_3:+40819142 None:intergenic
GTGGAAAGCAAGTTTGGTGT+GGG 0.619348 2_3:-40824176 Msa0292070:CDS
CTGGAAAGTAGTTGTAACAG+TGG 0.622165 2_3:+40826176 None:intergenic
AAGGAGCTGCATTTCGACCA+CGG 0.625576 2_3:-40825082 Msa0292070:CDS
TTTGGGACATGCGTCCACCA+GGG 0.639991 2_3:+40825856 None:intergenic
AGCATATTCATACCAAGTGG+TGG 0.641539 2_3:+40824008 None:intergenic
CTTAATCATACCGTTGACAG+AGG 0.665226 2_3:+40822984 None:intergenic
GAGTCTGCTAGAGGCCCTGG+TGG 0.667455 2_3:-40825870 Msa0292070:CDS
GTGGGAGAACTATAAACTCA+CGG 0.667731 2_3:-40819178 Msa0292070:three_prime_UTR
AGACTAGCCTTGGTTGAGCG+GGG 0.675839 2_3:+40819144 None:intergenic
CACAGCAACCTTAAAGACAG+TGG 0.684823 2_3:+40826084 None:intergenic
AAAGCATTATGCAATGAGAG+TGG 0.687726 2_3:-40824289 Msa0292070:intron
ATTGTGGTCATTGATAGGTG+TGG 0.696169 2_3:-40824120 Msa0292070:CDS
GTTCAAGAATGGGAGTCGAG+GGG 0.707586 2_3:-40825016 Msa0292070:CDS
GGATTGCAGATGTCACAGGA+CGG 0.724946 2_3:-40824034 Msa0292070:CDS
GGAGAACTATAAACTCACGG+TGG 0.830587 2_3:-40819175 Msa0292070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTTTTTTTTT+TGG - chr2_3:40818992-40819011 Msa0292070:intron 0.0%
!! TTAAAAAAAAAATGATGAAT+TGG + chr2_3:40818981-40819000 None:intergenic 10.0%
!! CCATTAAATAAATAAAAAAT+AGG + chr2_3:40819176-40819195 None:intergenic 10.0%
!!! CCTATTTTTTATTTATTTAA+TGG - chr2_3:40819173-40819192 Msa0292070:three_prime_UTR 10.0%
!!! TGATATATTTTATATGATTT+TGG - chr2_3:40821615-40821634 Msa0292070:CDS 10.0%
!! TTAAAGAAAAAATAATACTT+TGG - chr2_3:40824752-40824771 Msa0292070:intron 10.0%
!!! TATGATTATGATTTTTGAAA+TGG - chr2_3:40819036-40819055 Msa0292070:three_prime_UTR 15.0%
!!! ATATTTTATAGCTGTTAAAT+TGG - chr2_3:40819233-40819252 Msa0292070:three_prime_UTR 15.0%
!! TACAAAATATTGTCAAATAA+CGG + chr2_3:40819329-40819348 None:intergenic 15.0%
!!! TTTTATATATAGTCATTGTT+TGG - chr2_3:40819709-40819728 Msa0292070:intron 15.0%
!! TGTTACATAAAAGATATTTA+TGG + chr2_3:40820351-40820370 None:intergenic 15.0%
!!! GATCATTATTTCTTATTATT+AGG - chr2_3:40820794-40820813 Msa0292070:intron 15.0%
!!! AAATGTTTTTTTTCTTTGTT+AGG - chr2_3:40821045-40821064 Msa0292070:intron 15.0%
!! TTTAATTAATATAAGCTAGA+TGG + chr2_3:40821090-40821109 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr2_3:40824856-40824875 Msa0292070:intron 15.0%
!!! TTACTATTTTTTATTCTCTT+CGG + chr2_3:40825053-40825072 None:intergenic 15.0%
!! ATTCAAATTGTGAAATCATA+AGG + chr2_3:40820160-40820179 None:intergenic 20.0%
!!! AAATATCTTTTATGTAACAC+CGG - chr2_3:40820352-40820371 Msa0292070:intron 20.0%
!!! CCAATAATAATTTAAGACAA+TGG + chr2_3:40820429-40820448 None:intergenic 20.0%
!! CCATTGTCTTAAATTATTAT+TGG - chr2_3:40820426-40820445 Msa0292070:intron 20.0%
!!! TATTGATTACTTTTGTTGTT+TGG - chr2_3:40820746-40820765 Msa0292070:intron 20.0%
!!! AAATAATGATCATTTTCACT+GGG + chr2_3:40820785-40820804 None:intergenic 20.0%
!!! TTATTTCTTATTATTAGGTG+TGG - chr2_3:40820799-40820818 Msa0292070:intron 20.0%
!!! ACAGTATTTTGTACTAAATA+AGG + chr2_3:40821368-40821387 None:intergenic 20.0%
!! CCATAAAATAGTCATTTATT+TGG + chr2_3:40821774-40821793 None:intergenic 20.0%
!!! CCAAATAAATGACTATTTTA+TGG - chr2_3:40821771-40821790 Msa0292070:CDS 20.0%
!!! TTCTTTATTGCTTTTTTAAC+TGG - chr2_3:40822144-40822163 Msa0292070:intron 20.0%
!!! TCTTTATTGCTTTTTTAACT+GGG - chr2_3:40822145-40822164 Msa0292070:intron 20.0%
!! ACTATTACAATGTAAAACAT+GGG - chr2_3:40822319-40822338 Msa0292070:intron 20.0%
!! TAAGATTCTTAGTAAAAAGA+AGG - chr2_3:40822366-40822385 Msa0292070:intron 20.0%
!! CTTATGCTATAATTAAGTTA+AGG - chr2_3:40823056-40823075 Msa0292070:CDS 20.0%
!!! CTATTTTTAATCTTCCATAT+AGG - chr2_3:40823088-40823107 Msa0292070:intron 20.0%
!!! TAGAACTTTAGAATTTTGAA+TGG + chr2_3:40823192-40823211 None:intergenic 20.0%
!!! AAAATTCTAAAGTTCTAAGT+TGG - chr2_3:40823195-40823214 Msa0292070:intron 20.0%
!!! AAATTCTAAAGTTCTAAGTT+GGG - chr2_3:40823196-40823215 Msa0292070:intron 20.0%
!! GGTGTATACATAAATAATTA+CGG + chr2_3:40823695-40823714 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG + chr2_3:40824719-40824738 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG - chr2_3:40824718-40824737 Msa0292070:intron 20.0%
!!! AGAACTATTTTTAATCATGT+TGG - chr2_3:40825408-40825427 Msa0292070:intron 20.0%
!!! TTAGAAATGATAATGTTCAA+AGG + chr2_3:40825635-40825654 None:intergenic 20.0%
!! AATAAATTCACACTAAAGTT+TGG + chr2_3:40825662-40825681 None:intergenic 20.0%
!! ATGACATATCTAATTAGTTA+TGG - chr2_3:40826047-40826066 Msa0292070:intron 20.0%
!! AAAAACAAATAACACAACTT+TGG - chr2_3:40826101-40826120 Msa0292070:CDS 20.0%
!! TTCAATTATCCATTATATCA+AGG - chr2_3:40826140-40826159 Msa0292070:exon 20.0%
!!! TGGTTGTTTTTATTGATTTT+TGG - chr2_3:40826167-40826186 Msa0292070:five_prime_UTR 20.0%
! TCTATGATACACTATTTAGT+AGG + chr2_3:40819365-40819384 None:intergenic 25.0%
!! TTGATTATTTGTACTGATCA+TGG - chr2_3:40819521-40819540 Msa0292070:CDS 25.0%
!! TGATTATTTGTACTGATCAT+GGG - chr2_3:40819522-40819541 Msa0292070:CDS 25.0%
!!! TATCACATGCTTTAAAACAA+TGG + chr2_3:40819680-40819699 None:intergenic 25.0%
! ATTACTGGAATTCATTTCAT+TGG - chr2_3:40819817-40819836 Msa0292070:intron 25.0%
! TTCCAGAAAATAAGAAACTT+AGG + chr2_3:40819867-40819886 None:intergenic 25.0%
! CTCTATGTTGTCAAATTTAA+GGG + chr2_3:40820051-40820070 None:intergenic 25.0%
! AGAATTAGTTAGATGAAAAG+TGG + chr2_3:40820212-40820231 None:intergenic 25.0%
!! TTATGTTTTTCTAATATGCG+AGG + chr2_3:40820493-40820512 None:intergenic 25.0%
!! GAAATAATGATCATTTTCAC+TGG + chr2_3:40820786-40820805 None:intergenic 25.0%
! ATAAGAACATAGTTTCTACT+AGG - chr2_3:40820939-40820958 Msa0292070:intron 25.0%
! ACAAAAGTAACAAAAGTGAT+TGG - chr2_3:40821130-40821149 Msa0292070:intron 25.0%
! ATTCAAGAAGAGAAAAAAAG+TGG + chr2_3:40821239-40821258 None:intergenic 25.0%
!! ATATTCAGTATTTTCAATCG+CGG + chr2_3:40821463-40821482 None:intergenic 25.0%
! GAAAGATGATAAAGTTAAAC+AGG + chr2_3:40821571-40821590 None:intergenic 25.0%
! ATAACTTCGTGAATGAAAAA+AGG + chr2_3:40822195-40822214 None:intergenic 25.0%
!!! ATTTTTCAGTTGTTTCATAC+AGG + chr2_3:40822230-40822249 None:intergenic 25.0%
! GACTATTACAATGTAAAACA+TGG - chr2_3:40822318-40822337 Msa0292070:intron 25.0%
! AATCTTACACAGACAATATA+AGG + chr2_3:40822353-40822372 None:intergenic 25.0%
! GTAGTTACAAATAAGAGTTT+AGG - chr2_3:40822580-40822599 Msa0292070:intron 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr2_3:40822937-40822956 None:intergenic 25.0%
!!! TCTTTTTTCATAAGCTATTC+TGG + chr2_3:40822972-40822991 None:intergenic 25.0%
!! TACTACAAGGTATTCATTTA+AGG - chr2_3:40823250-40823269 Msa0292070:intron 25.0%
!!! CTTATTTTACAGTGAAAGAT+GGG - chr2_3:40823338-40823357 Msa0292070:intron 25.0%
!!! AGCTTTTTCAAGAATTTCAA+AGG - chr2_3:40823454-40823473 Msa0292070:intron 25.0%
! ACCATATCAAGTTAAGTAAT+TGG - chr2_3:40823757-40823776 Msa0292070:intron 25.0%
! AAAAAGATCACTAGTTGAAA+AGG - chr2_3:40823792-40823811 Msa0292070:intron 25.0%
!!! GATTGCTAAATTTTGGAAAA+TGG + chr2_3:40823957-40823976 None:intergenic 25.0%
! TTTCCAAAATTTAGCAATCA+TGG - chr2_3:40823958-40823977 Msa0292070:intron 25.0%
!!! AAAGGATTTTGGAGTAAATT+CGG - chr2_3:40823995-40824014 Msa0292070:intron 25.0%
! TTCAACTGAACTATGATTAT+GGG + chr2_3:40824077-40824096 None:intergenic 25.0%
! TTTCAACTGAACTATGATTA+TGG + chr2_3:40824078-40824097 None:intergenic 25.0%
! ATGCATTATATAACAAGGTT+TGG - chr2_3:40824426-40824445 Msa0292070:intron 25.0%
! GTAGTATTGTTTGTTTCAAT+TGG + chr2_3:40824483-40824502 None:intergenic 25.0%
! AAACAAACCAATAGTTGATT+AGG + chr2_3:40824728-40824747 None:intergenic 25.0%
! TGTAACACAGTATTAATTGA+AGG - chr2_3:40824781-40824800 Msa0292070:intron 25.0%
! GTAACACAGTATTAATTGAA+GGG - chr2_3:40824782-40824801 Msa0292070:intron 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG + chr2_3:40824845-40824864 None:intergenic 25.0%
! CTAAGACATAAGTACTTATT+TGG + chr2_3:40825166-40825185 None:intergenic 25.0%
! ATACTTCAACTATAAACAAC+TGG + chr2_3:40825607-40825626 None:intergenic 25.0%
! ACTTTAGTGTGAATTTATTC+TGG - chr2_3:40825663-40825682 Msa0292070:intron 25.0%
!!! TTCTGGTTTACTTTTTTTTC+TGG - chr2_3:40825680-40825699 Msa0292070:intron 25.0%
!!! TCTGGTTTACTTTTTTTTCT+GGG - chr2_3:40825681-40825700 Msa0292070:intron 25.0%
! TGTATTATACTTAGTGTGTT+TGG - chr2_3:40825736-40825755 Msa0292070:intron 25.0%
! TTTGGAAAACACCAAAATTA+CGG - chr2_3:40825754-40825773 Msa0292070:intron 25.0%
! TCTAATTAGTTATGGTTGAT+TGG - chr2_3:40826055-40826074 Msa0292070:intron 25.0%
! CTAATATTGTAGAATATGCA+TGG - chr2_3:40826193-40826212 Msa0292070:five_prime_UTR 25.0%
!!! AGTCATTGTTTTTTGGTTGT+TGG + chr2_3:40818889-40818908 None:intergenic 30.0%
ATAGGAAAAGAACCTTCTTT+GGG + chr2_3:40819158-40819177 None:intergenic 30.0%
AATAGGAAAAGAACCTTCTT+TGG + chr2_3:40819159-40819178 None:intergenic 30.0%
AAATAGTAGTTTATTCCACC+CGG - chr2_3:40819279-40819298 Msa0292070:three_prime_UTR 30.0%
!! TTGTCAAATAACGGATATAG+CGG + chr2_3:40819320-40819339 None:intergenic 30.0%
TAGTTAATAACAGTGTTTCG+TGG - chr2_3:40819397-40819416 Msa0292070:exon 30.0%
! AGTTTCTTTCTGACAGATTT+TGG - chr2_3:40819458-40819477 Msa0292070:CDS 30.0%
! CTAATTTGAGTGTTTCTGAT+TGG - chr2_3:40819493-40819512 Msa0292070:CDS 30.0%
AAGGTCTTTCACAAGATTTA+TGG - chr2_3:40819553-40819572 Msa0292070:CDS 30.0%
AATTGCAATACTTAAGCCAA+AGG + chr2_3:40819581-40819600 None:intergenic 30.0%
TTCCTTCTGAATGTTATTAC+TGG - chr2_3:40819802-40819821 Msa0292070:intron 30.0%
TTCCAGTAATAACATTCAGA+AGG + chr2_3:40819807-40819826 None:intergenic 30.0%
!!! GTCCTAAGTTTCTTATTTTC+TGG - chr2_3:40819862-40819881 Msa0292070:intron 30.0%
GCTCTATGTTGTCAAATTTA+AGG + chr2_3:40820052-40820071 None:intergenic 30.0%
TAAATTTGACAACATAGAGC+AGG - chr2_3:40820052-40820071 Msa0292070:intron 30.0%
ATTAGTTAGATGAAAAGTGG+AGG + chr2_3:40820209-40820228 None:intergenic 30.0%
! GTTTCTTCCATTTTCAACAT+CGG - chr2_3:40820536-40820555 Msa0292070:intron 30.0%
AATTTGATTCTGAATGCACT+AGG + chr2_3:40820595-40820614 None:intergenic 30.0%
!!! AGAGTAGTTTTTTCTCTGAT+TGG - chr2_3:40820619-40820638 Msa0292070:intron 30.0%
!!! CTCTGATTGGCATATTTTTT+AGG - chr2_3:40820632-40820651 Msa0292070:intron 30.0%
!!! GATTGGCATATTTTTTAGGA+AGG - chr2_3:40820636-40820655 Msa0292070:intron 30.0%
CAAAATCTTGGTCAGTTTAA+AGG - chr2_3:40820902-40820921 Msa0292070:intron 30.0%
ATCAGAGATTAAGAAATCCA+AGG + chr2_3:40821018-40821037 None:intergenic 30.0%
TAACAAAAGTGATTGGAGAA+GGG - chr2_3:40821137-40821156 Msa0292070:intron 30.0%
! TTGTCAGTGTTGTTAAATAG+TGG - chr2_3:40821286-40821305 Msa0292070:intron 30.0%
ATTAACATGTTGCTAAGAAG+AGG - chr2_3:40821498-40821517 Msa0292070:CDS 30.0%
! TATTCATCAAAGCCTCTTTT+TGG + chr2_3:40821536-40821555 None:intergenic 30.0%
GAAACAACTGAAAAATAGCT+TGG - chr2_3:40822234-40822253 Msa0292070:intron 30.0%
! ATAAGAGTTTAGGACAATGA+AGG - chr2_3:40822590-40822609 Msa0292070:intron 30.0%
! TAAGAGTTTAGGACAATGAA+GGG - chr2_3:40822591-40822610 Msa0292070:intron 30.0%
AAACTAGAATATACGCGTAA+GGG + chr2_3:40822813-40822832 None:intergenic 30.0%
AAAACTAGAATATACGCGTA+AGG + chr2_3:40822814-40822833 None:intergenic 30.0%
ATTCCATTTATAGCGTTGTT+TGG - chr2_3:40822843-40822862 Msa0292070:intron 30.0%
AATCCAAACAACGCTATAAA+TGG + chr2_3:40822849-40822868 None:intergenic 30.0%
! TTATATTTTGTGAGACTGTC+CGG - chr2_3:40822882-40822901 Msa0292070:intron 30.0%
TTAATCTTCCATATAGGAGT+AGG - chr2_3:40823094-40823113 Msa0292070:intron 30.0%
TATGTTCAGTTTCCAGTTAA+AGG - chr2_3:40823161-40823180 Msa0292070:intron 30.0%
ATGAATACCTTGTAGTAGAA+CGG + chr2_3:40823247-40823266 None:intergenic 30.0%
! TTCAGTTTTCATTGCTTACA+GGG - chr2_3:40823308-40823327 Msa0292070:intron 30.0%
CCATCTTTCACTGTAAAATA+AGG + chr2_3:40823340-40823359 None:intergenic 30.0%
!!! CCTTATTTTACAGTGAAAGA+TGG - chr2_3:40823337-40823356 Msa0292070:intron 30.0%
AGAGACTATAATTGCTCAAA+CGG - chr2_3:40823386-40823405 Msa0292070:intron 30.0%
TTATTCAATGTAACGTCTGA+GGG + chr2_3:40823423-40823442 None:intergenic 30.0%
TTTATTCAATGTAACGTCTG+AGG + chr2_3:40823424-40823443 None:intergenic 30.0%
AGACGTTACATTGAATAAAG+TGG - chr2_3:40823425-40823444 Msa0292070:intron 30.0%
TTTCAAGAATTTCAAAGGAC+AGG - chr2_3:40823459-40823478 Msa0292070:intron 30.0%
TTCAAGAATTTCAAAGGACA+GGG - chr2_3:40823460-40823479 Msa0292070:intron 30.0%
AAGATTGACTAACCATCTAT+GGG + chr2_3:40823517-40823536 None:intergenic 30.0%
! AATTTGAGATAGTTCTCTCA+AGG + chr2_3:40823610-40823629 None:intergenic 30.0%
ATATGGTAAGTTCAACAAAG+AGG + chr2_3:40823744-40823763 None:intergenic 30.0%
! CCCAATTACTTAACTTGATA+TGG + chr2_3:40823761-40823780 None:intergenic 30.0%
ATGTCCATGAGTCAAATAAT+GGG - chr2_3:40823832-40823851 Msa0292070:intron 30.0%
!! GATGTGTGCTTTTTATTAAC+TGG - chr2_3:40823926-40823945 Msa0292070:intron 30.0%
! CAACCATGATTGCTAAATTT+TGG + chr2_3:40823964-40823983 None:intergenic 30.0%
! TTGAAAGAGTTAGTTGTTTC+TGG + chr2_3:40824224-40824243 None:intergenic 30.0%
! GCTTAAAATGCTGTGATTTT+GGG + chr2_3:40824286-40824305 None:intergenic 30.0%
! AGCTTAAAATGCTGTGATTT+TGG + chr2_3:40824287-40824306 None:intergenic 30.0%
ACCAGATGCATTATATAACA+AGG - chr2_3:40824421-40824440 Msa0292070:intron 30.0%
! ACCTTGTTATATAATGCATC+TGG + chr2_3:40824425-40824444 None:intergenic 30.0%
CGTCAATAACTAGTTGATTA+GGG + chr2_3:40824564-40824583 None:intergenic 30.0%
TCGTCAATAACTAGTTGATT+AGG + chr2_3:40824565-40824584 None:intergenic 30.0%
! AATACTTACTGCCTTGTTAA+TGG - chr2_3:40824912-40824931 Msa0292070:intron 30.0%
TTGGTATTCTTCCATTAACA+AGG + chr2_3:40824926-40824945 None:intergenic 30.0%
!! CTTATTTTCATAAGTTCTGC+AGG + chr2_3:40825261-40825280 None:intergenic 30.0%
!! ATCATGTTGGTTGATTTTGT+AGG - chr2_3:40825421-40825440 Msa0292070:intron 30.0%
!! TCATGTTGGTTGATTTTGTA+GGG - chr2_3:40825422-40825441 Msa0292070:intron 30.0%
!!! AACCTCCAATATGTTACTTT+TGG + chr2_3:40825784-40825803 None:intergenic 30.0%
!! GAGGTTCTAAAAATTACAGT+GGG - chr2_3:40825798-40825817 Msa0292070:intron 30.0%
!! GCTGTCTAATATGATTTGTT+TGG - chr2_3:40826013-40826032 Msa0292070:intron 30.0%
ATCCATTATATCAAGGTTTG+TGG - chr2_3:40826147-40826166 Msa0292070:five_prime_UTR 30.0%
AACCACAAACCTTGATATAA+TGG + chr2_3:40826152-40826171 None:intergenic 30.0%
AACAGTGGAAAAAGTCATCA+TGG + chr2_3:40818806-40818825 None:intergenic 35.0%
!!! CAGTGGTAGTCATTGTTTTT+TGG + chr2_3:40818896-40818915 None:intergenic 35.0%
AATGACTACCACTGTCTTTA+AGG - chr2_3:40818902-40818921 Msa0292070:three_prime_UTR 35.0%
TGAATTGGTTAGAAAGAGAG+AGG + chr2_3:40818966-40818985 None:intergenic 35.0%
! TTTGAAATGGTTGCAGTTTC+AGG - chr2_3:40819049-40819068 Msa0292070:three_prime_UTR 35.0%
!! TAAATTGGTGTTGTCAATCG+CGG - chr2_3:40819248-40819267 Msa0292070:three_prime_UTR 35.0%
GAGCATAACACAGTTAAAGT+TGG - chr2_3:40819776-40819795 Msa0292070:intron 35.0%
TCTAGAGAGAAAACTGAAGA+TGG - chr2_3:40819888-40819907 Msa0292070:intron 35.0%
AAATCATAAGGCTTCGTACA+AGG + chr2_3:40820148-40820167 None:intergenic 35.0%
TATTACCTCCCATTTAGTCA+AGG - chr2_3:40820181-40820200 Msa0292070:intron 35.0%
! TTTTGTGTGCTAATGACAAG+TGG - chr2_3:40820268-40820287 Msa0292070:intron 35.0%
! AGGAACTTTTTATTGGGCAA+GGG + chr2_3:40820319-40820338 None:intergenic 35.0%
! CTTTAGATTGAAAGCGTGTT+CGG - chr2_3:40820377-40820396 Msa0292070:intron 35.0%
TTGCATATAGAATTCATGCC+TGG + chr2_3:40820687-40820706 None:intergenic 35.0%
! AAAGCATTATGCAATGAGAG+TGG - chr2_3:40820705-40820724 Msa0292070:intron 35.0%
GAGAAATTGTGGTCATTGAT+AGG - chr2_3:40820869-40820888 Msa0292070:intron 35.0%
!! GTTTAAAGGACTTGTTGCAT+CGG - chr2_3:40820916-40820935 Msa0292070:intron 35.0%
! GAAAGCATATTCATACCAAG+TGG + chr2_3:40820992-40821011 None:intergenic 35.0%
ATGAATATGCTTTCTGTCCT+TGG - chr2_3:40820998-40821017 Msa0292070:intron 35.0%
GTAACAAAAGTGATTGGAGA+AGG - chr2_3:40821136-40821155 Msa0292070:intron 35.0%
ATACTGTCAAATAGAAGCTG+TGG - chr2_3:40821381-40821400 Msa0292070:intron 35.0%
CAATAATATAGCGTTGCTAC+AGG + chr2_3:40821407-40821426 None:intergenic 35.0%
AAGATGCAGCAATAAGATCA+AGG + chr2_3:40821593-40821612 None:intergenic 35.0%
GGAGATGAATAGTCTATCTA+TGG - chr2_3:40821747-40821766 Msa0292070:intron 35.0%
! TGATGTTTTACACTCACCTA+TGG - chr2_3:40821884-40821903 Msa0292070:intron 35.0%
GCTAATATGTGAGCTTTACA+TGG - chr2_3:40822070-40822089 Msa0292070:intron 35.0%
AAACCATTTCATCTCATGCT+TGG - chr2_3:40822107-40822126 Msa0292070:intron 35.0%
AAACCAAGCATGAGATGAAA+TGG + chr2_3:40822113-40822132 None:intergenic 35.0%
! TTTCATCTCATGCTTGGTTT+TGG - chr2_3:40822113-40822132 Msa0292070:intron 35.0%
CCTCTTGGATTAATCACAAT+GGG + chr2_3:40822395-40822414 None:intergenic 35.0%
CCATTGTGATTAATCCAAGA+GGG - chr2_3:40822393-40822412 Msa0292070:intron 35.0%
TTATGCAGCAGCTATGAAAT+GGG - chr2_3:40822429-40822448 Msa0292070:intron 35.0%
! TTTAGGACAATGAAGGGAAT+TGG - chr2_3:40822597-40822616 Msa0292070:intron 35.0%
TTAGGACAATGAAGGGAATT+GGG - chr2_3:40822598-40822617 Msa0292070:intron 35.0%
AATTGGGGTTACTTGTCAAT+AGG - chr2_3:40822614-40822633 Msa0292070:intron 35.0%
TGAGAATAACTTCTGCAGAT+TGG + chr2_3:40822742-40822761 None:intergenic 35.0%
! TATATTTTGTGAGACTGTCC+GGG - chr2_3:40822883-40822902 Msa0292070:intron 35.0%
!! GCTTTTTCCATAAGTTTTCC+CGG + chr2_3:40822904-40822923 None:intergenic 35.0%
AGGATTGTGGTGTAAAATCA+AGG - chr2_3:40823114-40823133 Msa0292070:intron 35.0%
TGAATGGAGAAACCTTTAAC+TGG + chr2_3:40823176-40823195 None:intergenic 35.0%
! GTTCAGTTTTCATTGCTTAC+AGG - chr2_3:40823307-40823326 Msa0292070:intron 35.0%
GAGACTATAATTGCTCAAAC+GGG - chr2_3:40823387-40823406 Msa0292070:intron 35.0%
CTATGGGCTTTCTTGAAAAA+AGG + chr2_3:40823501-40823520 None:intergenic 35.0%
!! TTTTCAAGAAAGCCCATAGA+TGG - chr2_3:40823502-40823521 Msa0292070:intron 35.0%
CAAGATTGACTAACCATCTA+TGG + chr2_3:40823518-40823537 None:intergenic 35.0%
! CATAGATGGTTAGTCAATCT+TGG - chr2_3:40823516-40823535 Msa0292070:intron 35.0%
CATTATTTGACTCATGGACA+TGG + chr2_3:40823833-40823852 None:intergenic 35.0%
CATGTCCATGAGTCAAATAA+TGG - chr2_3:40823831-40823850 Msa0292070:intron 35.0%
!! GTGTGCTTTTTATTAACTGG+TGG - chr2_3:40823929-40823948 Msa0292070:intron 35.0%
! AGCACAATCTGAAAGGATTT+TGG - chr2_3:40823984-40824003 Msa0292070:intron 35.0%
TCAGGGTTTAGTGTAAATTC+TGG + chr2_3:40824121-40824140 None:intergenic 35.0%
TTACACTAAACCCTGAATAG+AGG - chr2_3:40824125-40824144 Msa0292070:CDS 35.0%
! GCATTTTAAGCTATTGAGTC+TGG - chr2_3:40824295-40824314 Msa0292070:CDS 35.0%
ACTAAATGTAACCTGCAAGA+CGG + chr2_3:40824350-40824369 None:intergenic 35.0%
TGCTCACTTAACCTGTTTAT+CGG - chr2_3:40824374-40824393 Msa0292070:intron 35.0%
TCTTTACTAACCCGATAAAC+AGG + chr2_3:40824388-40824407 None:intergenic 35.0%
!! TGTTTATCGGGTTAGTAAAG+AGG - chr2_3:40824387-40824406 Msa0292070:intron 35.0%
TTAGTAAAGAGGTCCATGTT+TGG - chr2_3:40824398-40824417 Msa0292070:intron 35.0%
!! TTTTGAAGAGAGGATTGTGA+GGG + chr2_3:40824514-40824533 None:intergenic 35.0%
!!! CTCTATATGGTTTTGAAGAG+AGG + chr2_3:40824524-40824543 None:intergenic 35.0%
CGAATGTAGAGTTCTCTATA+TGG + chr2_3:40824537-40824556 None:intergenic 35.0%
TCTACTTAAACCACTCATCA+CGG - chr2_3:40824587-40824606 Msa0292070:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2_3:40824882-40824901 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr2_3:40824662-40824681 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr2_3:40824882-40824901 Msa0292070:intron 35.0%
GCAAGTCATATCTGAAAAGT+TGG + chr2_3:40824945-40824964 None:intergenic 35.0%
! ATATGACTTGCACACAGAAA+GGG - chr2_3:40824954-40824973 Msa0292070:CDS 35.0%
!! AAACACTTCTGAGACAGTTT+GGG + chr2_3:40825334-40825353 None:intergenic 35.0%
!! TAAACACTTCTGAGACAGTT+TGG + chr2_3:40825335-40825354 None:intergenic 35.0%
!! CATGTTGGTTGATTTTGTAG+GGG - chr2_3:40825423-40825442 Msa0292070:intron 35.0%
! CCAAAGACATTTTTCCTCTT+GGG + chr2_3:40825475-40825494 None:intergenic 35.0%
CCAAGAGGAAAAATGTCTTT+GGG - chr2_3:40825473-40825492 Msa0292070:intron 35.0%
GTCGACCAAAAGTAACATAT+TGG - chr2_3:40825776-40825795 Msa0292070:intron 35.0%
GACCAAAAGTAACATATTGG+AGG - chr2_3:40825779-40825798 Msa0292070:intron 35.0%
!! GGAGGTTCTAAAAATTACAG+TGG - chr2_3:40825797-40825816 Msa0292070:intron 35.0%
ACCATGAGACTATCAAGAAA+AGG - chr2_3:40826078-40826097 Msa0292070:CDS 35.0%
!! TCCTTTTCTTGATAGTCTCA+TGG + chr2_3:40826082-40826101 None:intergenic 35.0%
AGTGGAAAAAGTCATCATGG+TGG + chr2_3:40818803-40818822 None:intergenic 40.0%
CTGGAAAGTAGTTGTAACAG+TGG + chr2_3:40818821-40818840 None:intergenic 40.0%
TGAATAGAGAGAGAAAGAGC+TGG + chr2_3:40818840-40818859 None:intergenic 40.0%
!! TGTCTTTAAGGTTGCTGTGT+TGG - chr2_3:40818914-40818933 Msa0292070:three_prime_UTR 40.0%
!! GTCTTTAAGGTTGCTGTGTT+GGG - chr2_3:40818915-40818934 Msa0292070:three_prime_UTR 40.0%
GCATCAACTCTTGCTAGAAA+TGG - chr2_3:40819082-40819101 Msa0292070:three_prime_UTR 40.0%
!! AAATTGGTGTTGTCAATCGC+GGG - chr2_3:40819249-40819268 Msa0292070:three_prime_UTR 40.0%
! TGTACTGATCATGGGAACAT+AGG - chr2_3:40819530-40819549 Msa0292070:CDS 40.0%
CACAAGATTTATGGCTCCTT+TGG - chr2_3:40819562-40819581 Msa0292070:intron 40.0%
AGAGAAAACTGAAGATGGCA+AGG - chr2_3:40819893-40819912 Msa0292070:intron 40.0%
! ACTTTTCTCTCCATTCAGCT+AGG + chr2_3:40820007-40820026 None:intergenic 40.0%
GCTGAATGGAGAGAAAAGTT+TGG - chr2_3:40820008-40820027 Msa0292070:intron 40.0%
! ACTTTTTATTGGGCAAGGGA+GGG + chr2_3:40820315-40820334 None:intergenic 40.0%
! AACTTTTTATTGGGCAAGGG+AGG + chr2_3:40820316-40820335 None:intergenic 40.0%
! CAGGAACTTTTTATTGGGCA+AGG + chr2_3:40820320-40820339 None:intergenic 40.0%
CTTGCCCAATAAAAAGTTCC+TGG - chr2_3:40820318-40820337 Msa0292070:intron 40.0%
! CCAGCCAGGAACTTTTTATT+GGG + chr2_3:40820325-40820344 None:intergenic 40.0%
! ACCAGCCAGGAACTTTTTAT+TGG + chr2_3:40820326-40820345 None:intergenic 40.0%
! ACGCTTTCAATCTAAAGTGC+CGG + chr2_3:40820374-40820393 None:intergenic 40.0%
TTACGTATGTCAGTGCTTCA+TGG - chr2_3:40820452-40820471 Msa0292070:intron 40.0%
TGCATAGCCGATGTTGAAAA+TGG + chr2_3:40820546-40820565 None:intergenic 40.0%
AGGACTAAGCAAGAGATTTG+TGG - chr2_3:40820656-40820675 Msa0292070:intron 40.0%
GGACTAAGCAAGAGATTTGT+GGG - chr2_3:40820657-40820676 Msa0292070:intron 40.0%
TTAGGTGTGGAAAGCAAGTT+TGG - chr2_3:40820812-40820831 Msa0292070:intron 40.0%
!! TGGGTATTGGAAGAGTTGAA+TGG - chr2_3:40820837-40820856 Msa0292070:intron 40.0%
GGAAGAGTTGAATGGTTAGA+TGG - chr2_3:40820845-40820864 Msa0292070:intron 40.0%
GGTTAGATGGTGAGAAATTG+TGG - chr2_3:40820858-40820877 Msa0292070:intron 40.0%
ATTGTGGTCATTGATAGGTG+TGG - chr2_3:40820874-40820893 Msa0292070:intron 40.0%
AGCATATTCATACCAAGTGG+TGG + chr2_3:40820989-40821008 None:intergenic 40.0%
AAGCTTATTGGCATAGCAGT+TGG + chr2_3:40821176-40821195 None:intergenic 40.0%
! GCTATGCCAATAAGCTTGTT+AGG - chr2_3:40821179-40821198 Msa0292070:intron 40.0%
GTAGCACCTAACAAGCTTAT+TGG + chr2_3:40821188-40821207 None:intergenic 40.0%
ATACCAGTGAAGCCAAAAAG+AGG - chr2_3:40821521-40821540 Msa0292070:CDS 40.0%
! TCTCTGATCCATACTGACTA+CGG - chr2_3:40821797-40821816 Msa0292070:CDS 40.0%
ACTCACCTATGGAATTTGTG+AGG - chr2_3:40821895-40821914 Msa0292070:intron 40.0%
! TGCAGCTTTTCTGATAACTC+AGG + chr2_3:40821941-40821960 None:intergenic 40.0%
CTTAATCATACCGTTGACAG+AGG + chr2_3:40822013-40822032 None:intergenic 40.0%
CAACTGAAAAATAGCTTGGC+AGG - chr2_3:40822238-40822257 Msa0292070:intron 40.0%
CTTGGATTAATCACAATGGG+AGG + chr2_3:40822392-40822411 None:intergenic 40.0%
CCCATTGTGATTAATCCAAG+AGG - chr2_3:40822392-40822411 Msa0292070:intron 40.0%
CCCTCTTGGATTAATCACAA+TGG + chr2_3:40822396-40822415 None:intergenic 40.0%
GTTATGCAGCAGCTATGAAA+TGG - chr2_3:40822428-40822447 Msa0292070:intron 40.0%
TAGGACAATGAAGGGAATTG+GGG - chr2_3:40822599-40822618 Msa0292070:intron 40.0%
! TTACTTGTCAATAGGTTGGC+TGG - chr2_3:40822622-40822641 Msa0292070:intron 40.0%
! TACTTGTCAATAGGTTGGCT+GGG - chr2_3:40822623-40822642 Msa0292070:intron 40.0%
AGACTCTAATTCCTAGAGGT+TGG - chr2_3:40822653-40822672 Msa0292070:intron 40.0%
GACTCTAATTCCTAGAGGTT+GGG - chr2_3:40822654-40822673 Msa0292070:intron 40.0%
TCCATATAGGAGTAGGATTG+TGG - chr2_3:40823101-40823120 Msa0292070:intron 40.0%
ACCACAATCCTACTCCTATA+TGG + chr2_3:40823105-40823124 None:intergenic 40.0%
TGTCGTGCTAGATACTACAT+AGG + chr2_3:40823644-40823663 None:intergenic 40.0%
TATCTAGCACGACACTTTAC+TGG - chr2_3:40823650-40823669 Msa0292070:intron 40.0%
! CAACAAAGAGGTCCATGTTT+TGG + chr2_3:40823732-40823751 None:intergenic 40.0%
CTTGCCCATTATTTGACTCA+TGG + chr2_3:40823839-40823858 None:intergenic 40.0%
ATGGTTGAGCACAATCTGAA+AGG - chr2_3:40823977-40823996 Msa0292070:intron 40.0%
ATTCTACTGCCTTCTTCCTT+TGG + chr2_3:40824167-40824186 None:intergenic 40.0%
GCTCACTTAACCTGTTTATC+GGG - chr2_3:40824375-40824394 Msa0292070:intron 40.0%
TAATGCATCTGGTCCAAACA+TGG + chr2_3:40824414-40824433 None:intergenic 40.0%
TTTGAAGAGAGGATTGTGAG+GGG + chr2_3:40824513-40824532 None:intergenic 40.0%
!!! GTTTTGAAGAGAGGATTGTG+AGG + chr2_3:40824515-40824534 None:intergenic 40.0%
TTATCTTAGACCGTGATGAG+TGG + chr2_3:40824600-40824619 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_3:40824886-40824905 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG - chr2_3:40824657-40824676 Msa0292070:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_3:40824886-40824905 Msa0292070:intron 40.0%
! GATATGACTTGCACACAGAA+AGG - chr2_3:40824953-40824972 Msa0292070:CDS 40.0%
AGACAGTTTGGGAGAACTTA+TGG + chr2_3:40825323-40825342 None:intergenic 40.0%
CCCAAGAGGAAAAATGTCTT+TGG - chr2_3:40825472-40825491 Msa0292070:intron 40.0%
! CCCAAAGACATTTTTCCTCT+TGG + chr2_3:40825476-40825495 None:intergenic 40.0%
! AACAAGAGACTAGCCATATG+TGG - chr2_3:40825501-40825520 Msa0292070:intron 40.0%
AACACAGAAGTCACCACATA+TGG + chr2_3:40825517-40825536 None:intergenic 40.0%
TGTGTTAGTCCCAATGTTGA+AGG - chr2_3:40825531-40825550 Msa0292070:intron 40.0%
TCTATGGCACCTTCAACATT+GGG + chr2_3:40825543-40825562 None:intergenic 40.0%
ATCTATGGCACCTTCAACAT+TGG + chr2_3:40825544-40825563 None:intergenic 40.0%
TGCTGCTAATCCACTATCTA+TGG + chr2_3:40825559-40825578 None:intergenic 40.0%
! CTTTTGGTCGACCGTAATTT+TGG + chr2_3:40825768-40825787 None:intergenic 40.0%
GTGGGAGAACTATAAACTCA+CGG - chr2_3:40825816-40825835 Msa0292070:intron 40.0%
AAGGTTTCGGATCAAAAGCT+CGG - chr2_3:40825972-40825991 Msa0292070:intron 40.0%
GGAAAAAGTCATCATGGTGG+TGG + chr2_3:40818800-40818819 None:intergenic 45.0%
CACAGCAACCTTAAAGACAG+TGG + chr2_3:40818913-40818932 None:intergenic 45.0%
! TTTAAGGTTGCTGTGTTGGG+TGG - chr2_3:40818918-40818937 Msa0292070:three_prime_UTR 45.0%
ACACTCTTTGAGTCTGCTAG+AGG - chr2_3:40819115-40819134 Msa0292070:three_prime_UTR 45.0%
TGCTATAAACTATTGCCGGG+TGG + chr2_3:40819297-40819316 None:intergenic 45.0%
!! CGGTGCTATAAACTATTGCC+GGG + chr2_3:40819300-40819319 None:intergenic 45.0%
!! GCGGTGCTATAAACTATTGC+CGG + chr2_3:40819301-40819320 None:intergenic 45.0%
CTGATCATGGGAACATAGGA+AGG - chr2_3:40819534-40819553 Msa0292070:CDS 45.0%
!! GGCTTGCTAACCGAGAAAAA+CGG + chr2_3:40819942-40819961 None:intergenic 45.0%
! TGGCTCGTCTAGTTCAAGAA+TGG - chr2_3:40819967-40819986 Msa0292070:intron 45.0%
! GGCTCGTCTAGTTCAAGAAT+GGG - chr2_3:40819968-40819987 Msa0292070:intron 45.0%
TAGTTCAAGAATGGGAGTCG+AGG - chr2_3:40819976-40819995 Msa0292070:intron 45.0%
AGTTCAAGAATGGGAGTCGA+GGG - chr2_3:40819977-40819996 Msa0292070:intron 45.0%
TGGAGGAGCCTTGACTAAAT+GGG + chr2_3:40820192-40820211 None:intergenic 45.0%
CCCAATAAAAAGTTCCTGGC+TGG - chr2_3:40820322-40820341 Msa0292070:intron 45.0%
GATATTTATGGTCACCAGCC+AGG + chr2_3:40820339-40820358 None:intergenic 45.0%
AATGCCAACATGAGTCGTGT+CGG + chr2_3:40820406-40820425 None:intergenic 45.0%
! ACATCGGCTATGCATGTACA+AGG - chr2_3:40820552-40820571 Msa0292070:intron 45.0%
AAGAGATTTGTGGGTGTTCC+AGG - chr2_3:40820666-40820685 Msa0292070:intron 45.0%
! TGTGGAAAGCAAGTTTGGTG+TGG - chr2_3:40820817-40820836 Msa0292070:intron 45.0%
!! GTGGAAAGCAAGTTTGGTGT+GGG - chr2_3:40820818-40820837 Msa0292070:intron 45.0%
!! AGCAAGTTTGGTGTGGGTAT+TGG - chr2_3:40820824-40820843 Msa0292070:intron 45.0%
TGGTCATTGATAGGTGTGGA+TGG - chr2_3:40820878-40820897 Msa0292070:intron 45.0%
GGTGTGGATGGACAAAATCT+TGG - chr2_3:40820890-40820909 Msa0292070:intron 45.0%
ACTAGGATTGCAGATGTCAC+AGG - chr2_3:40820956-40820975 Msa0292070:intron 45.0%
!!! AAGCCTCTTTTTGGCTTCAC+TGG + chr2_3:40821527-40821546 None:intergenic 45.0%
! AAGAAGCACAGTAAGTAGCG+CGG - chr2_3:40821726-40821745 Msa0292070:intron 45.0%
TGCAGCCTCACAAATTCCAT+AGG + chr2_3:40821903-40821922 None:intergenic 45.0%
AGCTGCACAATCTTCCTGTT+AGG - chr2_3:40821954-40821973 Msa0292070:intron 45.0%
! TTTTGCAGAGCCTCTGTCAA+CGG - chr2_3:40822000-40822019 Msa0292070:intron 45.0%
GCTTGGCAGGAATAAGTTTG+TGG - chr2_3:40822251-40822270 Msa0292070:intron 45.0%
! ACTTTTGTCTCATGCCCTCT+TGG + chr2_3:40822410-40822429 None:intergenic 45.0%
GGGGTTACTTGTCAATAGGT+TGG - chr2_3:40822618-40822637 Msa0292070:intron 45.0%
GGCTAGACTCTAATTCCTAG+AGG - chr2_3:40822649-40822668 Msa0292070:intron 45.0%
GAGTAACTAACCCAACCTCT+AGG + chr2_3:40822667-40822686 None:intergenic 45.0%
! GCAGATTGGCTACAAGAACT+GGG + chr2_3:40822728-40822747 None:intergenic 45.0%
! TGCAGATTGGCTACAAGAAC+TGG + chr2_3:40822729-40822748 None:intergenic 45.0%
AGACTGTCCGGGAAAACTTA+TGG - chr2_3:40822894-40822913 Msa0292070:intron 45.0%
CACGACACTTTACTGGATAG+TGG - chr2_3:40823657-40823676 Msa0292070:intron 45.0%
TGTATACACCTAAGTGCACC+CGG - chr2_3:40823705-40823724 Msa0292070:intron 45.0%
!! AAGAGGTCCATGTTTTGGAC+CGG + chr2_3:40823727-40823746 None:intergenic 45.0%
CACCACGTGTAGGAACATTT+CGG + chr2_3:40823865-40823884 None:intergenic 45.0%
TAGACATGAACACCACGTGT+AGG + chr2_3:40823875-40823894 None:intergenic 45.0%
TTCCTTTGGTCATCTGCGTT+TGG + chr2_3:40824153-40824172 None:intergenic 45.0%
GTCAGCTCAAGCATAGATGT+TGG + chr2_3:40824194-40824213 None:intergenic 45.0%
! GGCACAATTGTTGTTCAGGA+TGG + chr2_3:40824329-40824348 None:intergenic 45.0%
! AGACGGCACAATTGTTGTTC+AGG + chr2_3:40824333-40824352 None:intergenic 45.0%
! GAGCTTTCTCTGGCTTATGA+AGG + chr2_3:40824454-40824473 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_3:40824885-40824904 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_3:40824885-40824904 Msa0292070:intron 45.0%
!! GTTGAAGGTGCCATAGATAG+TGG - chr2_3:40825546-40825565 Msa0292070:intron 45.0%
!! GTGGATTAGCAGCAGCTTTA+AGG - chr2_3:40825565-40825584 Msa0292070:intron 45.0%
GGAGAACTATAAACTCACGG+TGG - chr2_3:40825819-40825838 Msa0292070:intron 45.0%
!! CAGCTATAGTAGACTAGCCT+TGG + chr2_3:40825863-40825882 None:intergenic 45.0%
TTTGCACACTCGCTGTCTTA+AGG - chr2_3:40825953-40825972 Msa0292070:intron 45.0%
CACTCGCTGTCTTAAGGTTT+CGG - chr2_3:40825959-40825978 Msa0292070:intron 45.0%
!!! CTATTTTTTATTTATTTAAT+GGG - chr2_3:40819174-40819193 Msa0292070:three_prime_UTR 5.0%
AAGGAGCTGCATTTCGACCA+CGG - chr2_3:40819912-40819931 Msa0292070:intron 50.0%
TGAACTAGACGAGCCACTTC+AGG + chr2_3:40819963-40819982 None:intergenic 50.0%
GTTCAAGAATGGGAGTCGAG+GGG - chr2_3:40819978-40819997 Msa0292070:intron 50.0%
AGGAGCCTTGACTAAATGGG+AGG + chr2_3:40820189-40820208 None:intergenic 50.0%
GTGGAGGAGCCTTGACTAAA+TGG + chr2_3:40820193-40820212 None:intergenic 50.0%
GGCTATGCATGTACAAGGCA+TGG - chr2_3:40820557-40820576 Msa0292070:intron 50.0%
GGATTGCAGATGTCACAGGA+CGG - chr2_3:40820960-40820979 Msa0292070:intron 50.0%
GCGATACAGCGTAGCGAATT+TGG - chr2_3:40821317-40821336 Msa0292070:intron 50.0%
! GATCCATACTGACTACGGCT+TGG - chr2_3:40821802-40821821 Msa0292070:CDS 50.0%
CAACCAAGCCGTAGTCAGTA+TGG + chr2_3:40821808-40821827 None:intergenic 50.0%
TCCTGTTAGGCCATGTTTCG+CGG - chr2_3:40821967-40821986 Msa0292070:intron 50.0%
GCCATGTTTCGCGGTTATGA+TGG - chr2_3:40821976-40821995 Msa0292070:intron 50.0%
GCCATCATAACCGCGAAACA+TGG + chr2_3:40821980-40821999 None:intergenic 50.0%
GTTGGGCTTACTGTGATAGC+AGG - chr2_3:40823213-40823232 Msa0292070:intron 50.0%
TACTGTGATAGCAGGAAGCC+AGG - chr2_3:40823221-40823240 Msa0292070:intron 50.0%
TACCTTGTAGTAGAACGGCC+TGG + chr2_3:40823242-40823261 None:intergenic 50.0%
!! AGAGGTCCATGTTTTGGACC+GGG + chr2_3:40823726-40823745 None:intergenic 50.0%
CACGTGTAGGAACATTTCGG+AGG + chr2_3:40823862-40823881 None:intergenic 50.0%
CTCCGAAATGTTCCTACACG+TGG - chr2_3:40823860-40823879 Msa0292070:intron 50.0%
! GCGTTTGGCTCCTCTATTCA+GGG + chr2_3:40824138-40824157 None:intergenic 50.0%
! TGCGTTTGGCTCCTCTATTC+AGG + chr2_3:40824139-40824158 None:intergenic 50.0%
AGCCAAACGCAGATGACCAA+AGG - chr2_3:40824148-40824167 Msa0292070:CDS 50.0%
CGCAGATGACCAAAGGAAGA+AGG - chr2_3:40824155-40824174 Msa0292070:CDS 50.0%
CAACAATTGTGCCGTCTTGC+AGG - chr2_3:40824336-40824355 Msa0292070:CDS 50.0%
TTGGAGCTCAGAGCTTTCTC+TGG + chr2_3:40824464-40824483 None:intergenic 50.0%
!! TAGACTAGCCTTGGTTGAGC+GGG + chr2_3:40825854-40825873 None:intergenic 50.0%
!! GTAGACTAGCCTTGGTTGAG+CGG + chr2_3:40825855-40825874 None:intergenic 50.0%
AAGGTTGCTGTGTTGGGTGG+TGG - chr2_3:40818921-40818940 Msa0292070:three_prime_UTR 55.0%
TTTGAGTCTGCTAGAGGCCC+TGG - chr2_3:40819121-40819140 Msa0292070:three_prime_UTR 55.0%
! TTTGGGACATGCGTCCACCA+GGG + chr2_3:40819141-40819160 None:intergenic 55.0%
GTGGACGCATGTCCCAAAGA+AGG - chr2_3:40819143-40819162 Msa0292070:three_prime_UTR 55.0%
!! CCACGGTGCTCCGTTTTTCT+CGG - chr2_3:40819929-40819948 Msa0292070:intron 55.0%
CTCGGTTAGCAAGCCTGAAG+TGG - chr2_3:40819947-40819966 Msa0292070:intron 55.0%
GTGTCCGACACGACTCATGT+TGG - chr2_3:40820399-40820418 Msa0292070:intron 55.0%
ACCGCGAAACATGGCCTAAC+AGG + chr2_3:40821971-40821990 None:intergenic 55.0%
! GTCAATAGGTTGGCTGGGAG+AGG - chr2_3:40822628-40822647 Msa0292070:intron 55.0%
AGCCAGGCCGTTCTACTACA+AGG - chr2_3:40823237-40823256 Msa0292070:intron 55.0%
!! GTTTTGGACCGGGTGCACTT+AGG + chr2_3:40823716-40823735 None:intergenic 55.0%
AGTGCACCCGGTCCAAAACA+TGG - chr2_3:40823717-40823736 Msa0292070:intron 55.0%
TCTTGGGCAATGCTAGCAGC+TGG + chr2_3:40825459-40825478 None:intergenic 55.0%
AGCTGCTAGCATTGCCCAAG+AGG - chr2_3:40825458-40825477 Msa0292070:intron 55.0%
!! AGACTAGCCTTGGTTGAGCG+GGG + chr2_3:40825853-40825872 None:intergenic 55.0%
!! CTTTGGGACATGCGTCCACC+AGG + chr2_3:40819142-40819161 None:intergenic 60.0%
!! CCGAGAAAAACGGAGCACCG+TGG + chr2_3:40819932-40819951 None:intergenic 60.0%
CGAGGGGTCTCCTAGCTGAA+TGG - chr2_3:40819994-40820013 Msa0292070:intron 60.0%
GATTGCTCCCCGCTCAACCA+AGG - chr2_3:40825843-40825862 Msa0292070:intron 60.0%
GAGTCTGCTAGAGGCCCTGG+TGG - chr2_3:40819124-40819143 Msa0292070:three_prime_UTR 65.0%
ACAGGACGGCTGCCACCACT+TGG - chr2_3:40820974-40820993 Msa0292070:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40818781 40826235 40818781 ID=Msa0292070;Name=Msa0292070
chr2_3 mRNA 40818781 40826235 40818781 ID=Msa0292070-mRNA-1;Parent=Msa0292070;Name=Msa0292070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=89|1|1|1|0.88|0.8|10|536|381
chr2_3 exon 40818781 40818952 40818781 ID=Msa0292070-mRNA-1:exon:13164;Parent=Msa0292070-mRNA-1
chr2_3 exon 40819035 40819573 40819035 ID=Msa0292070-mRNA-1:exon:13163;Parent=Msa0292070-mRNA-1
chr2_3 exon 40821493 40821666 40821493 ID=Msa0292070-mRNA-1:exon:13162;Parent=Msa0292070-mRNA-1
chr2_3 exon 40821758 40821846 40821758 ID=Msa0292070-mRNA-1:exon:13161;Parent=Msa0292070-mRNA-1
chr2_3 exon 40822995 40823092 40822995 ID=Msa0292070-mRNA-1:exon:13160;Parent=Msa0292070-mRNA-1
chr2_3 exon 40824021 40824200 40824021 ID=Msa0292070-mRNA-1:exon:13159;Parent=Msa0292070-mRNA-1
chr2_3 exon 40824290 40824362 40824290 ID=Msa0292070-mRNA-1:exon:13158;Parent=Msa0292070-mRNA-1
chr2_3 exon 40824943 40825123 40824943 ID=Msa0292070-mRNA-1:exon:13157;Parent=Msa0292070-mRNA-1
chr2_3 exon 40825852 40825951 40825852 ID=Msa0292070-mRNA-1:exon:13156;Parent=Msa0292070-mRNA-1
chr2_3 exon 40826071 40826235 40826071 ID=Msa0292070-mRNA-1:exon:13155;Parent=Msa0292070-mRNA-1
chr2_3 five_prime_UTR 40826147 40826235 40826147 ID=Msa0292070-mRNA-1:five_prime_utr;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40826071 40826146 40826071 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40825852 40825951 40825852 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40824943 40825123 40824943 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40824290 40824362 40824290 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40824021 40824200 40824021 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40822995 40823092 40822995 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40821758 40821846 40821758 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40821493 40821666 40821493 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 CDS 40819399 40819573 40819399 ID=Msa0292070-mRNA-1:cds;Parent=Msa0292070-mRNA-1
chr2_3 three_prime_UTR 40819035 40819398 40819035 ID=Msa0292070-mRNA-1:three_prime_utr;Parent=Msa0292070-mRNA-1
chr2_3 three_prime_UTR 40818781 40818952 40818781 ID=Msa0292070-mRNA-1:three_prime_utr;Parent=Msa0292070-mRNA-1
Gene Sequence

>Msa0292070

ATGTCTGTTTCAGAATCCAACAACCAAAAAACAATGACTACCACTGTCTTTAAGGTTGCTGTGTTGGGTGGTGGAATTTCAGGAGCAGTGTGTGCATCAACTCTTGCTAGAAATGGTGTTTCAGTTACACTCTTTGAGTCTGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGAGAGAAAACTGAAGATGGCAAGGAGCTGCATTTCGACCACGGTGCTCCGTTTTTCTCGGTTAGCAAGCCTGAAGTGGCTCGTCTAGTTCAAGAATGGGAGTCGAGGGGTCTCCTAGCTGAATGGAGAGAAAAGTTTGGTTCATTTGATATTCAAACCCTTAAATTTGACAACATAGAGCAGGAAGGACTAAGCAAGAGATTTGTGGGTGTTCCAGGCATGAATTCTATATGCAAAGCATTATGCAATGAGAGTGGTGTGGAAAGCAAGTTTGGTGTGGGTATTGGAAGAGTTGAATGGTTAGATGGTGAGAAATTGTGGTCATTGATAGGTGTGGATGGACAAAATCTTGGTCAGTTTAAAGGACTTGTTGCATCGGATAAGAACATAGTTTCTACTAGGATTGCAGATGTCACAGGACGGCTGCCACCACTTGATTTAAAGTTGTTGCCTGAGTTATCAGAAAAGCTGCACAATCTTCCTGTTAGGCCATGTTTCGCGGTTATGATGGCTTTTGCAGAGCCTCTGTCAACGTTTCCAGTTAAAGGTTTCTCCATTCAAAATTCTAAAGTTCTAAGTTGGGCTTACTGTGATAGCAGGAAGCCAGGCCGTTCTACTACAAGTGAAAGATGGGTTCTTCATTCAACAGCAGAATATGCAGAGACTATAATTGCTCAAACGGGACTCAAGAAGCCCTCAGACGTTACATTGAATAAAGTGGCTGAAGAGCTTTTTCAAGAATTTCAAAGGACAGGGACTAACATATCACAACCTTTTTTCAAGAAAGCCCATAGATGGGGAAGTGCATTTCCAGCTGCTAGCATTGCCCAAGAGGAAAAATGTCTTTGGGACAGAAACAAGAGACTAGCCATATGTGGTGACTTCTGTGTTAGTCCCAATGTTGAAGGTGCCATAGATAGTGGATTAGCAGCAGCTTTAAGGCTTAAAGATATTAGTTCCAGTTGTTTATAG

Protein sequence

>Msa0292070

MSVSESNNQKTMTTTVFKVAVLGGGISGAVCASTLARNGVSVTLFESARGPGGRMSQRREKTEDGKELHFDHGAPFFSVSKPEVARLVQEWESRGLLAEWREKFGSFDIQTLKFDNIEQEGLSKRFVGVPGMNSICKALCNESGVESKFGVGIGRVEWLDGEKLWSLIGVDGQNLGQFKGLVASDKNIVSTRIADVTGRLPPLDLKLLPELSEKLHNLPVRPCFAVMMAFAEPLSTFPVKGFSIQNSKVLSWAYCDSRKPGRSTTSERWVLHSTAEYAETIIAQTGLKKPSDVTLNKVAEELFQEFQRTGTNISQPFFKKAHRWGSAFPAASIAQEEKCLWDRNKRLAICGDFCVSPNVEGAIDSGLAAALRLKDISSSCL*