AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929750 MtrunA17_Chr8g0393121 98.178 494 8 1 1 493 1 494 0.0 1003
Msa0929750 MtrunA17_Chr6g0478481 80.785 484 92 1 10 492 13 496 0.0 824
Msa0929750 MtrunA17_Chr3g0089671 31.707 164 103 4 277 431 86 249 9.60e-14 72.4
Msa0929750 MtrunA17_Chr4g0018381 27.966 118 83 1 284 399 75 192 5.92e-12 64.7
Msa0929750 MtrunA17_Chr1g0150551 29.565 115 79 1 287 399 130 244 1.66e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929750 AT1G48600.2 72.008 493 134 2 1 492 1 490 0.0 755
Msa0929750 AT3G18000.1 71.694 484 136 1 10 492 7 490 0.0 753
Msa0929750 AT1G73600.2 70.994 493 140 2 3 492 11 503 0.0 752
Msa0929750 AT1G73600.1 71.400 493 136 2 1 492 1 489 0.0 751
Msa0929750 AT1G48600.1 72.574 474 129 1 20 492 1 474 0.0 735
Msa0929750 AT5G13710.1 33.537 164 100 4 277 431 86 249 1.35e-14 75.5
Msa0929750 AT5G13710.2 33.537 164 100 4 277 431 86 249 1.35e-14 75.5
Msa0929750 AT1G64970.1 28.846 104 72 1 289 390 130 233 1.60e-11 66.2

Find 135 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAACATACACATTATT+AGG 0.167772 6_2:+78568701 None:intergenic
TAATGATTGTTCTCCTCATT+TGG 0.252000 6_2:-78568606 Msa0929750:three_prime_UTR
AGCACGGGAAATCACATTTA+TGG 0.261865 6_2:+78570038 None:intergenic
CAACTCTATCTAAGAACTTC+TGG 0.266070 6_2:+78571251 None:intergenic
TCCTTTGAGCTTTCTCTTGT+GGG 0.273120 6_2:-78571470 Msa0929750:CDS
ACAAACCTTTGTGTAAAATC+TGG 0.284632 6_2:+78571993 None:intergenic
GTGAACGAGGGGAGCAGAAG+TGG 0.305672 6_2:-78568815 Msa0929750:CDS
GTTGAACAATAAATGTGTTT+TGG 0.315616 6_2:-78568686 Msa0929750:three_prime_UTR
GATGGAAGGCGAAGCAGATC+AGG 0.322790 6_2:-78568839 Msa0929750:CDS
CCTTCAGAAACATCCATCTT+TGG 0.322834 6_2:+78572784 None:intergenic
GAATCCTGTTTCCACCAATC+TGG 0.329775 6_2:-78572057 Msa0929750:CDS
CACTGATGAAGTCGTCCTTC+TGG 0.335719 6_2:+78568990 None:intergenic
CTTGTCGAGATCAGAAGCTT+TGG 0.356843 6_2:+78573813 None:intergenic
TGGTGCAGATTTGCTGGATA+TGG 0.363415 6_2:-78571306 Msa0929750:intron
AGGTTAGATCACATGATGAT+AGG 0.371337 6_2:-78571279 Msa0929750:CDS
TGGAAGATTTACCGGAGAAT+TGG 0.371460 6_2:-78573041 Msa0929750:CDS
GCCGGTATTGGAAGATTTAC+CGG 0.377974 6_2:-78573049 Msa0929750:CDS
TTCCTTCATATTCTGGTAGC+AGG 0.383460 6_2:+78573092 None:intergenic
GCTGAAAGCTGGTCAATTGC+TGG 0.390425 6_2:-78573017 Msa0929750:CDS
ATCCCCAGATTGGTGGAAAC+AGG 0.392051 6_2:+78572053 None:intergenic
CTGTAGAACGAAAGCATTAA+CGG 0.397285 6_2:-78572850 Msa0929750:intron
TTCCTTTGAGCTTTCTCTTG+TGG 0.410639 6_2:-78571471 Msa0929750:CDS
TGTTGAGGATCGAACTGATC+AGG 0.414212 6_2:-78569148 Msa0929750:intron
TTTATTAGCACTGGAGGACT+TGG 0.419528 6_2:-78571178 Msa0929750:intron
ATTGAGCTTGGAGCCGGTAT+TGG 0.420522 6_2:-78573061 Msa0929750:CDS
GGAAAATCAGTTATTGAGCT+TGG 0.426730 6_2:-78573073 Msa0929750:CDS
ATAAAGAGAGGTAAAGGAAA+GGG 0.428954 6_2:+78568488 None:intergenic
TTACGATATGAGCGCGTGTA+TGG 0.432033 6_2:-78571208 Msa0929750:CDS
CTGGATGTTGGTTGTGGTGT+TGG 0.442233 6_2:-78570120 Msa0929750:CDS
GGTTAGATCACATGATGATA+GGG 0.442687 6_2:-78571278 Msa0929750:CDS
AAAGAAATAAAGAGAGGTAA+AGG 0.442777 6_2:+78568482 None:intergenic
GTGAAATTCAGAAATCATAC+TGG 0.443496 6_2:-78573882 Msa0929750:CDS
CGATTCAAATCCTTACTAGT+TGG 0.443622 6_2:+78568526 None:intergenic
GTTGGTTGTGGTGTTGGCGG+AGG 0.443753 6_2:-78570114 Msa0929750:CDS
TTCTCTTTGAATCCCCAGAT+TGG 0.446538 6_2:+78572043 None:intergenic
TGCCATATGAGTGATATCTC+TGG 0.446888 6_2:-78571497 Msa0929750:CDS
GGCCAAGGCTTTATTAGCAC+TGG 0.447921 6_2:-78571187 Msa0929750:CDS
CTGCAGATGCTGGAGAATGC+TGG 0.456311 6_2:-78569183 Msa0929750:intron
AATCCTGTTTCCACCAATCT+GGG 0.456764 6_2:-78572056 Msa0929750:CDS
TCCCAGAGATATCACTCATA+TGG 0.459147 6_2:+78571495 None:intergenic
CAAACCTTTGTGTAAAATCT+GGG 0.462103 6_2:+78571994 None:intergenic
AGCTTTCAGCGCCAATTCTC+CGG 0.462761 6_2:+78573030 None:intergenic
CATTCTTCCATGGCTTCACC+AGG 0.473107 6_2:-78574008 Msa0929750:intron
GGAGAATTGGCGCTGAAAGC+TGG 0.475774 6_2:-78573028 Msa0929750:CDS
ATTGGTGGAAACAGGATTCT+CGG 0.477277 6_2:+78572061 None:intergenic
TGAACGAGGGGAGCAGAAGT+GGG 0.479207 6_2:-78568814 Msa0929750:CDS
AGCTGGTCAATTGCTGGCTG+TGG 0.479823 6_2:-78573011 Msa0929750:CDS
ACGAGTGTAGATTACATCAT+AGG 0.479962 6_2:+78569936 None:intergenic
CGTGCTATTGAACGTGCTAT+CGG 0.481806 6_2:-78570021 Msa0929750:CDS
GTAATTAGAAGTTGACCTCC+AGG 0.482434 6_2:+78569402 None:intergenic
GCTCGTATTCTTTCATGTCA+TGG 0.482515 6_2:+78569307 None:intergenic
ATTACAATCCTACTCACTAC+AGG 0.482810 6_2:-78572020 Msa0929750:CDS
GTTTGTGAAAACACTGCAGC+AGG 0.484254 6_2:-78569032 Msa0929750:CDS
TAAAATGATCTAAATAATGT+TGG 0.485432 6_2:+78569438 None:intergenic
CTTGTGGGCTGTAAATGCAT+TGG 0.492972 6_2:-78571455 Msa0929750:CDS
AAAGCCTGGTCAGAAAGTAC+TGG 0.495881 6_2:-78570139 Msa0929750:CDS
AAAGGAACTTGTAGCTAAGC+TGG 0.495920 6_2:-78570166 Msa0929750:CDS
CTCCAGTGCTAATAAAGCCT+TGG 0.496405 6_2:+78571185 None:intergenic
GCGAGACCTTGAGAAACTCC+TGG 0.497412 6_2:+78574084 None:intergenic
TCCGGTAAATCTTCCAATAC+CGG 0.497820 6_2:+78573048 None:intergenic
TCTTTGAATCCCCAGATTGG+TGG 0.498788 6_2:+78572046 None:intergenic
ATTACATCATAGGTCTTCTC+AGG 0.499504 6_2:+78569946 None:intergenic
TATTCAGCAAATTCTGAAGA+TGG 0.499970 6_2:+78569354 None:intergenic
CAACTAGTAAGGATTTGAAT+CGG 0.499991 6_2:-78568525 Msa0929750:three_prime_UTR
GAGCTTCTAACCGTAGATCC+AGG 0.511213 6_2:-78574102 Msa0929750:five_prime_UTR
CCTTACTTTGATGTATAGCA+TGG 0.513489 6_2:+78569909 None:intergenic
GATGTTGGTTGTGGTGTTGG+CGG 0.516899 6_2:-78570117 Msa0929750:CDS
TCAGTTATTGAGCTTGGAGC+CGG 0.519308 6_2:-78573067 Msa0929750:CDS
AATAAAGAGAGGTAAAGGAA+AGG 0.519582 6_2:+78568487 None:intergenic
ACTGATTACTGCAAAAGTGC+TGG 0.520458 6_2:-78569381 Msa0929750:CDS
ACAATGAAATTGTGGAGAGA+TGG 0.523489 6_2:-78568857 Msa0929750:CDS
ATTCGCATTTCATTCTTCCA+TGG 0.523985 6_2:-78574018 Msa0929750:exon
AGAATTTGCTGAATACATCA+AGG 0.524867 6_2:-78569346 Msa0929750:CDS
GATTTGCTGGATATGGCAAA+AGG 0.528860 6_2:-78571299 Msa0929750:CDS
AGGTAGATTGTGTGGTGTGA+AGG 0.529192 6_2:-78574184 Msa0929750:five_prime_UTR
GATGTATCTTTCAGATAATG+AGG 0.530422 6_2:-78572728 Msa0929750:intron
TTGAGAAACTCCTGGATCTA+CGG 0.530800 6_2:+78574092 None:intergenic
ATAATAGCAAGAACTGCAGC+AGG 0.534274 6_2:+78568749 None:intergenic
CATTGAGAGTGCAATAAAGA+AGG 0.534730 6_2:-78572984 Msa0929750:intron
TCCTTCATATTCTGGTAGCA+GGG 0.535206 6_2:+78573093 None:intergenic
GCCATATGAGTGATATCTCT+GGG 0.536166 6_2:-78571496 Msa0929750:CDS
CATAATACCTGGTGAAGCCA+TGG 0.538535 6_2:+78574001 None:intergenic
TGATGTCACCTCTCCAAAGA+TGG 0.540164 6_2:-78572797 Msa0929750:CDS
TCTTCTCAAAGATCCAAATG+AGG 0.542001 6_2:+78568593 None:intergenic
AAGCAGATCAGGGGTGAACG+AGG 0.552850 6_2:-78568828 Msa0929750:CDS
ATGGAAGGCGAAGCAGATCA+GGG 0.557359 6_2:-78568838 Msa0929750:CDS
TATGAGCGCGTGTATGGCCA+AGG 0.560692 6_2:-78571202 Msa0929750:CDS
GCTAAGCTGGAACTAAAGCC+TGG 0.561514 6_2:-78570153 Msa0929750:CDS
GATTGTGTGGTGTGAAGGGT+AGG 0.564907 6_2:-78574179 Msa0929750:five_prime_UTR
TGGCGGAGGTGATTTCTACA+TGG 0.570395 6_2:-78570100 Msa0929750:CDS
CCAAAGATGGATGTTTCTGA+AGG 0.571313 6_2:-78572784 Msa0929750:CDS
ATGAAATGGTTGAAAGATGG+TGG 0.574449 6_2:-78572096 Msa0929750:CDS
AGGAGATGGAAAACAAGATG+AGG 0.575162 6_2:+78568559 None:intergenic
ATTCTAAAAGAAATAAAGAG+AGG 0.578364 6_2:+78568476 None:intergenic
GGTAGATTGTGTGGTGTGAA+GGG 0.583767 6_2:-78574183 Msa0929750:five_prime_UTR
CTGGGTTCCCTGTAGTGAGT+AGG 0.586374 6_2:+78572012 None:intergenic
TAGGAAAACTACTTTCACAC+TGG 0.587206 6_2:+78568720 None:intergenic
TGGATTTGATGTCATTGTTG+AGG 0.596748 6_2:-78569163 Msa0929750:CDS
GATAGCACGTTCAATAGCAC+GGG 0.597140 6_2:+78570023 None:intergenic
GGAGATGGAAAACAAGATGA+GGG 0.598192 6_2:+78568560 None:intergenic
ATGATGAAATGGTTGAAAGA+TGG 0.599340 6_2:-78572099 Msa0929750:CDS
ACATCCAGTACTTTCTGACC+AGG 0.599476 6_2:+78570135 None:intergenic
GAACGAGGGGAGCAGAAGTG+GGG 0.600599 6_2:-78568813 Msa0929750:CDS
GGATGACTACAATGAAATTG+TGG 0.600685 6_2:-78568865 Msa0929750:CDS
CGATAGCACGTTCAATAGCA+CGG 0.601134 6_2:+78570022 None:intergenic
ATTAAGTGCCTTCGATAGCG+AGG 0.603456 6_2:+78574062 None:intergenic
AGGTCTCGCCTCGCTATCGA+AGG 0.605259 6_2:-78574070 Msa0929750:five_prime_UTR
AGAAACATCCATCTTTGGAG+AGG 0.608120 6_2:+78572789 None:intergenic
GCAGATCAGGGGTGAACGAG+GGG 0.609433 6_2:-78568826 Msa0929750:CDS
TTTGCTGAATACATCAAGGA+AGG 0.610174 6_2:-78569342 Msa0929750:CDS
AGCAGATCAGGGGTGAACGA+GGG 0.610403 6_2:-78568827 Msa0929750:CDS
TGACATGAAAGAATACGAGC+AGG 0.615612 6_2:-78569304 Msa0929750:intron
CAAGGCTTTATTAGCACTGG+AGG 0.615635 6_2:-78571184 Msa0929750:CDS
CAAAGCTTCTGATCTCGACA+AGG 0.622617 6_2:-78573812 Msa0929750:CDS
AAATAAGAAGAATCAAAACC+AGG 0.627133 6_2:-78571420 Msa0929750:intron
GGTCAGAAAGTACTGGATGT+TGG 0.630821 6_2:-78570132 Msa0929750:CDS
ATCCTGTTTCCACCAATCTG+GGG 0.633940 6_2:-78572055 Msa0929750:CDS
TGAAATTGTGGAGAGATGGA+AGG 0.635643 6_2:-78568853 Msa0929750:CDS
GTTAGATCACATGATGATAG+GGG 0.637701 6_2:-78571277 Msa0929750:CDS
TTGTGCTGATCTCTCTGTCG+AGG 0.638294 6_2:-78573851 Msa0929750:CDS
TACAAGTGGTTGAAACCTGG+AGG 0.640796 6_2:-78569417 Msa0929750:CDS
AATTGCTCTCGAGAGCCAGA+AGG 0.643480 6_2:-78569005 Msa0929750:CDS
GTAGATCCAGGAGTTTCTCA+AGG 0.643884 6_2:-78574090 Msa0929750:five_prime_UTR
AAAGTACTGGATGTTGGTTG+TGG 0.647499 6_2:-78570126 Msa0929750:CDS
TCCCTGCTACCAGAATATGA+AGG 0.647755 6_2:-78573094 Msa0929750:CDS
GCTGAATACATCAAGGAAGG+AGG 0.652193 6_2:-78569339 Msa0929750:CDS
GCCCACAAGAGAAAGCTCAA+AGG 0.655286 6_2:+78571469 None:intergenic
ATAAATGAAGGTAGATTGTG+TGG 0.656478 6_2:-78574192 None:intergenic
TTCTTGGGCAGAAACGACAA+AGG 0.658742 6_2:-78570184 Msa0929750:intron
TTACAATCCTACTCACTACA+GGG 0.660434 6_2:-78572019 Msa0929750:CDS
GGGAAATCACATTTATGGAG+AGG 0.665644 6_2:+78570043 None:intergenic
TGGAAGGCGAAGCAGATCAG+GGG 0.665972 6_2:-78568837 Msa0929750:CDS
TGTGGTGTGAAGGGTAGGCA+AGG 0.681232 6_2:-78574174 Msa0929750:five_prime_UTR
GATCGATTAATGCAGCAGAG+AGG 0.711666 6_2:-78574127 Msa0929750:five_prime_UTR
CGACAAGGAAGAAAGACCTG+AGG 0.732813 6_2:-78573797 Msa0929750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATTATTTTCATTTTAT+AGG - chr6_2:78569010-78569029 Msa0929750:CDS 10.0%
!!! AGAATTATTTTCATTTTATA+GGG - chr6_2:78569011-78569030 Msa0929750:CDS 10.0%
!!! TTTTTTTTTTCTTTTCAATT+CGG - chr6_2:78569961-78569980 Msa0929750:CDS 10.0%
!!! ATTATCATTACATTTTATTT+TGG - chr6_2:78571732-78571751 Msa0929750:intron 10.0%
!!! AAATTTTAAAACATATTGAT+TGG - chr6_2:78571993-78572012 Msa0929750:intron 10.0%
!! TAAATTAAAACCAAATGAAT+CGG + chr6_2:78569152-78569171 None:intergenic 15.0%
!! AAAACAAAATGAAATGAAAA+AGG + chr6_2:78569431-78569450 None:intergenic 15.0%
!! GTAAATAAAAAAATCAACTT+TGG - chr6_2:78570064-78570083 Msa0929750:CDS 15.0%
!!! TTTTGTTTAATCTCAATTAT+TGG - chr6_2:78570215-78570234 Msa0929750:intron 15.0%
!! TTTGTTTAATCTCAATTATT+GGG - chr6_2:78570216-78570235 Msa0929750:intron 15.0%
!!! TTTTTAATCAAACAATAATC+TGG + chr6_2:78570685-78570704 None:intergenic 15.0%
!! TAAAATGATCTAAATAATGT+TGG + chr6_2:78573185-78573204 None:intergenic 15.0%
!!! CTTTTGTAATACTTTATTTT+AGG - chr6_2:78573693-78573712 Msa0929750:intron 15.0%
!!! AATCAAAGCTTTTAAATTAA+GGG + chr6_2:78573728-78573747 None:intergenic 15.0%
!! TCATTATTATTACGACATTA+AGG + chr6_2:78568677-78568696 None:intergenic 20.0%
!! AAAATAATTCTTAACATCCA+CGG + chr6_2:78569002-78569021 None:intergenic 20.0%
!!! ATTTTGATTAGACTATGAAT+TGG + chr6_2:78569298-78569317 None:intergenic 20.0%
!!! ATAATTTTACTCAAACAAAC+TGG - chr6_2:78569350-78569369 Msa0929750:CDS 20.0%
!!! CAAATTTTATGGAAATATGT+GGG + chr6_2:78569388-78569407 None:intergenic 20.0%
!! TTAACATGTTCTTAAATTCA+CGG + chr6_2:78570128-78570147 None:intergenic 20.0%
!! ACTAGAATAATTATTTGCAA+TGG + chr6_2:78570184-78570203 None:intergenic 20.0%
!! TTGTTTAATCTCAATTATTG+GGG - chr6_2:78570217-78570236 Msa0929750:intron 20.0%
!!! AGCTGTTTTATTTAATCAAA+AGG + chr6_2:78570768-78570787 None:intergenic 20.0%
!!! TCATTGGATTATATTTTGTA+AGG - chr6_2:78570992-78571011 Msa0929750:intron 20.0%
!!! TGTGTACAATAATATTTTCA+TGG - chr6_2:78571294-78571313 Msa0929750:CDS 20.0%
!! AATGAAAAGGTAGAAAATAT+TGG + chr6_2:78571681-78571700 None:intergenic 20.0%
!! AATTATTATGTAATTGTACC+TGG - chr6_2:78571855-78571874 Msa0929750:intron 20.0%
!!! TCATATAATTTTTTAGAGCA+TGG - chr6_2:78572172-78572191 Msa0929750:intron 20.0%
!! AATAACATTTACGAGTAATA+AGG + chr6_2:78572926-78572945 None:intergenic 20.0%
!!! ATTTTGATCAATCATTTTGT+TGG - chr6_2:78573025-78573044 Msa0929750:CDS 20.0%
!!! TATTTAGATCATTTTACAAG+TGG - chr6_2:78573189-78573208 Msa0929750:intron 20.0%
!!! CAATCAAAGCTTTTAAATTA+AGG + chr6_2:78573729-78573748 None:intergenic 20.0%
!!! ATTCTAAAAGAAATAAAGAG+AGG + chr6_2:78574147-78574166 None:intergenic 20.0%
! ATTAAGAAATGTGAAAGATG+AGG + chr6_2:78568856-78568875 None:intergenic 25.0%
! AGCTTAAGATGATAATATGA+TGG + chr6_2:78568948-78568967 None:intergenic 25.0%
! AAATAATTCTTAACATCCAC+GGG + chr6_2:78569001-78569020 None:intergenic 25.0%
! GGTATGATATATCAGATTAA+TGG + chr6_2:78569110-78569129 None:intergenic 25.0%
! GATATTGCAAAGAGAAAATT+AGG + chr6_2:78569244-78569263 None:intergenic 25.0%
!! GCAAATTTTATGGAAATATG+TGG + chr6_2:78569389-78569408 None:intergenic 25.0%
! AACAATAACAATTCTCAGAA+TGG + chr6_2:78569678-78569697 None:intergenic 25.0%
!! TTGATGTGATTTTCTCAAAT+TGG - chr6_2:78569864-78569883 Msa0929750:intron 25.0%
! TTGTACTAAATAGCATATTG+CGG - chr6_2:78570347-78570366 Msa0929750:intron 25.0%
! CAAATTATAAGTGTATAGTG+TGG + chr6_2:78570399-78570418 None:intergenic 25.0%
! CACACTATACACTTATAATT+TGG - chr6_2:78570397-78570416 Msa0929750:intron 25.0%
! TTAACAAAACATGACTTAGT+TGG - chr6_2:78570436-78570455 Msa0929750:intron 25.0%
! TAGCAAAAAGAATGATGAAA+TGG - chr6_2:78570510-78570529 Msa0929750:intron 25.0%
! AAAAAGATTGACATCAACTT+TGG - chr6_2:78570702-78570721 Msa0929750:intron 25.0%
! AAAAGATTGACATCAACTTT+GGG - chr6_2:78570703-78570722 Msa0929750:intron 25.0%
! AGTGTATGATTTCTATCTTA+TGG - chr6_2:78570734-78570753 Msa0929750:intron 25.0%
! ACATGTTTGAACCTAATTAA+CGG - chr6_2:78570793-78570812 Msa0929750:intron 25.0%
! AAATAAGAAGAATCAAAACC+AGG - chr6_2:78571200-78571219 Msa0929750:CDS 25.0%
!! TCTAACATGTTAATTTGAAG+CGG + chr6_2:78571491-78571510 None:intergenic 25.0%
!! TTTTCTACCTTTTCATTCTT+TGG - chr6_2:78571684-78571703 Msa0929750:intron 25.0%
! TAAGAGGAAGAATAATCAAA+TGG + chr6_2:78571799-78571818 None:intergenic 25.0%
! CATTACACGATAATTATAAG+AGG + chr6_2:78571815-78571834 None:intergenic 25.0%
!!! CTTTTCAATTTTCAAGCTAT+TGG - chr6_2:78571952-78571971 Msa0929750:intron 25.0%
! CACAAACAAATATATCCATT+TGG - chr6_2:78572205-78572224 Msa0929750:intron 25.0%
! AAAGAAAAGAAAACCAAGTA+TGG + chr6_2:78572328-78572347 None:intergenic 25.0%
! TTATGAGTTGCTTAATTCTT+GGG - chr6_2:78572421-78572440 Msa0929750:intron 25.0%
! TAAAAGAATACCTAAACTCT+AGG - chr6_2:78572872-78572891 Msa0929750:intron 25.0%
!! TCGTAAATGTTATTCCTTTT+CGG - chr6_2:78572932-78572951 Msa0929750:intron 25.0%
! TTGCAAGCAAATTAAACTAT+TGG - chr6_2:78572964-78572983 Msa0929750:intron 25.0%
! AAATCCAGAATTCTTCTTAA+TGG + chr6_2:78573003-78573022 None:intergenic 25.0%
! TACAAAGTACAGACATAAAA+AGG + chr6_2:78573062-78573081 None:intergenic 25.0%
!! AATAACTTCATTGTTACTTG+TGG - chr6_2:78573559-78573578 Msa0929750:intron 25.0%
!!! TAAAAGCTTTGATTGTTTTC+AGG - chr6_2:78573734-78573753 Msa0929750:intron 25.0%
!! ATAAGCGAATCATATTTTCT+TGG + chr6_2:78573844-78573863 None:intergenic 25.0%
! TGTTCAACATACACATTATT+AGG + chr6_2:78573922-78573941 None:intergenic 25.0%
!! GTTGAACAATAAATGTGTTT+TGG - chr6_2:78573934-78573953 Msa0929750:intron 25.0%
!! GACATTTTTGTTAAGTTTGT+TGG - chr6_2:78573991-78574010 Msa0929750:intron 25.0%
! AAAGAAATAAAGAGAGGTAA+AGG + chr6_2:78574141-78574160 None:intergenic 25.0%
GTGAAATTCAGAAATCATAC+TGG - chr6_2:78568738-78568757 Msa0929750:three_prime_UTR 30.0%
! TGATAATATGATGGTGCAAT+TGG + chr6_2:78568939-78568958 None:intergenic 30.0%
TAAGTGTGGAAGTTTGAAAA+CGG + chr6_2:78569210-78569229 None:intergenic 30.0%
AAACTTCCACACTTATACTT+TGG - chr6_2:78569215-78569234 Msa0929750:intron 30.0%
TTCTCTTTGCAATATCAACA+AGG - chr6_2:78569248-78569267 Msa0929750:intron 30.0%
GATTAGACTATGAATTGGAT+TGG + chr6_2:78569293-78569312 None:intergenic 30.0%
! ACATTGACAGGCAAATTTTA+TGG + chr6_2:78569399-78569418 None:intergenic 30.0%
ATGAATACAAAAGCAATGTC+TGG + chr6_2:78569473-78569492 None:intergenic 30.0%
!! ACTGATTTTCCTTCATATTC+TGG + chr6_2:78569538-78569557 None:intergenic 30.0%
GATGTATCTTTCAGATAATG+AGG - chr6_2:78569892-78569911 Msa0929750:intron 30.0%
ATGTATGATTGTATGAACTG+TGG - chr6_2:78570003-78570022 Msa0929750:CDS 30.0%
TTAAGTTACTAAGCAAAGCA+TGG - chr6_2:78570144-78570163 Msa0929750:CDS 30.0%
ATTATAAGTGTATAGTGTGG+CGG + chr6_2:78570396-78570415 None:intergenic 30.0%
ATGATGAAATGGTTGAAAGA+TGG - chr6_2:78570521-78570540 Msa0929750:intron 30.0%
CAAACCTTTGTGTAAAATCT+GGG + chr6_2:78570629-78570648 None:intergenic 30.0%
ACAAACCTTTGTGTAAAATC+TGG + chr6_2:78570630-78570649 None:intergenic 30.0%
CATGTTTGAACCTAATTAAC+GGG - chr6_2:78570794-78570813 Msa0929750:intron 30.0%
!!! GGTTGCTTTTCCAAATTTTA+CGG - chr6_2:78570854-78570873 Msa0929750:intron 30.0%
! GTAAGGCAAATAATACCTTT+TGG - chr6_2:78571009-78571028 Msa0929750:intron 30.0%
!! GCAAATAATACCTTTTGGTT+TGG - chr6_2:78571014-78571033 Msa0929750:intron 30.0%
ATCAAAGTTACCAAACCAAA+AGG + chr6_2:78571027-78571046 None:intergenic 30.0%
TTAAATACCTGCATGAACAA+AGG + chr6_2:78571099-78571118 None:intergenic 30.0%
!!! TTTAATCCTGCTTTTTTACC+TGG + chr6_2:78571221-78571240 None:intergenic 30.0%
ACATGTATACATCAGTCAAT+TGG + chr6_2:78571277-78571296 None:intergenic 30.0%
! TCTAGTAATTACAAGGTGTT+AGG - chr6_2:78571563-78571582 Msa0929750:intron 30.0%
ATTTCAAGATACGATCCAAA+TGG + chr6_2:78572223-78572242 None:intergenic 30.0%
AAAAGAACTTAACCTTGATC+AGG + chr6_2:78572373-78572392 None:intergenic 30.0%
CTTATGAGTTGCTTAATTCT+TGG - chr6_2:78572420-78572439 Msa0929750:intron 30.0%
!! AATTTTGATGTTGAGGTTGT+TGG - chr6_2:78572548-78572567 Msa0929750:intron 30.0%
!!! CTTCTCAGGATATGTTTTTT+TGG + chr6_2:78572663-78572682 None:intergenic 30.0%
AACATTTACGAGTAATAAGG+TGG + chr6_2:78572923-78572942 None:intergenic 30.0%
! AATTAAACTATTGGTCTCGT+TGG - chr6_2:78572973-78572992 Msa0929750:intron 30.0%
!! TCAATCATTTTGTTGGCTAA+AGG - chr6_2:78573032-78573051 Msa0929750:CDS 30.0%
!! CAATCATTTTGTTGGCTAAA+GGG - chr6_2:78573033-78573052 Msa0929750:CDS 30.0%
! TATTCAGCAAATTCTGAAGA+TGG + chr6_2:78573269-78573288 None:intergenic 30.0%
!! AGAATTTGCTGAATACATCA+AGG - chr6_2:78573274-78573293 Msa0929750:intron 30.0%
AAAGAGAGTAAGACAACAAA+CGG + chr6_2:78573343-78573362 None:intergenic 30.0%
TAATGATTGTTCTCCTCATT+TGG - chr6_2:78574014-78574033 Msa0929750:exon 30.0%
!!! TACTAGTTGGTTTTTCAACA+AGG + chr6_2:78574084-78574103 None:intergenic 30.0%
TGTTGAAAAACCAACTAGTA+AGG - chr6_2:78574084-78574103 Msa0929750:five_prime_UTR 30.0%
CAACTAGTAAGGATTTGAAT+CGG - chr6_2:78574095-78574114 Msa0929750:five_prime_UTR 30.0%
ATAAAGAGAGGTAAAGGAAA+GGG + chr6_2:78574135-78574154 None:intergenic 30.0%
AATAAAGAGAGGTAAAGGAA+AGG + chr6_2:78574136-78574155 None:intergenic 30.0%
ATTCGCATTTCATTCTTCCA+TGG - chr6_2:78568602-78568621 Msa0929750:three_prime_UTR 35.0%
! GATTCGCATTTCAATTTTGC+AGG - chr6_2:78568695-78568714 Msa0929750:three_prime_UTR 35.0%
AAATGTGAAAGATGAGGAGA+CGG + chr6_2:78568850-78568869 None:intergenic 35.0%
CAAATGAATCGGCTACTAAA+TGG + chr6_2:78569141-78569160 None:intergenic 35.0%
! CATTTAGTAGCCGATTCATT+TGG - chr6_2:78569139-78569158 Msa0929750:intron 35.0%
AAGTGTGGAAGTTTGAAAAC+GGG + chr6_2:78569209-78569228 None:intergenic 35.0%
!! GAATTGGATTGGTGCATTAT+TGG + chr6_2:78569282-78569301 None:intergenic 35.0%
GGAAAATCAGTTATTGAGCT+TGG - chr6_2:78569547-78569566 Msa0929750:intron 35.0%
! CATTGAGAGTGCAATAAAGA+AGG - chr6_2:78569636-78569655 Msa0929750:intron 35.0%
!! CTGTAGAACGAAAGCATTAA+CGG - chr6_2:78569770-78569789 Msa0929750:intron 35.0%
TTACTGTCAATTGGAACCAT+GGG + chr6_2:78570037-78570056 None:intergenic 35.0%
TTTACTGTCAATTGGAACCA+TGG + chr6_2:78570038-78570057 None:intergenic 35.0%
! ACAGCTTGTTTACTGTCAAT+TGG + chr6_2:78570046-78570065 None:intergenic 35.0%
TATCTTCTATCAGTGCTTTG+TGG - chr6_2:78570099-78570118 Msa0929750:CDS 35.0%
TTTCCCAATGCTGTTAAACA+CGG - chr6_2:78570254-78570273 Msa0929750:intron 35.0%
!!! CTAACCTTTTGTTTTTCCCT+TGG - chr6_2:78570469-78570488 Msa0929750:intron 35.0%
ATGAAATGGTTGAAAGATGG+TGG - chr6_2:78570524-78570543 Msa0929750:intron 35.0%
ATTACAATCCTACTCACTAC+AGG - chr6_2:78570600-78570619 Msa0929750:intron 35.0%
TTACAATCCTACTCACTACA+GGG - chr6_2:78570601-78570620 Msa0929750:intron 35.0%
TTGTAGTTATCTCTATCCCT+TGG - chr6_2:78570653-78570672 Msa0929750:intron 35.0%
ACAAAACACTCCCGTTAATT+AGG + chr6_2:78570807-78570826 None:intergenic 35.0%
! TGTTTTGTGATGGTAAAGGT+GGG - chr6_2:78570819-78570838 Msa0929750:intron 35.0%
! GCTTTTCCAAATTTTACGGT+TGG - chr6_2:78570858-78570877 Msa0929750:intron 35.0%
AGTTAATGTTGAGCACTCAT+TGG - chr6_2:78570976-78570995 Msa0929750:intron 35.0%
! GTTTGGTAACTTTGATCTGT+AGG - chr6_2:78571031-78571050 Msa0929750:intron 35.0%
! CAAATAATACCCTGTTGGTT+TGG - chr6_2:78571054-78571073 Msa0929750:intron 35.0%
TTGAAGTTACCAAACCAACA+GGG + chr6_2:78571066-78571085 None:intergenic 35.0%
ATTGAAGTTACCAAACCAAC+AGG + chr6_2:78571067-78571086 None:intergenic 35.0%
TCAAAACCAGGTAAAAAAGC+AGG - chr6_2:78571212-78571231 Msa0929750:CDS 35.0%
AGGTTAGATCACATGATGAT+AGG - chr6_2:78571341-78571360 Msa0929750:intron 35.0%
GGTTAGATCACATGATGATA+GGG - chr6_2:78571342-78571361 Msa0929750:intron 35.0%
GTTAGATCACATGATGATAG+GGG - chr6_2:78571343-78571362 Msa0929750:intron 35.0%
CAACTCTATCTAAGAACTTC+TGG + chr6_2:78571372-78571391 None:intergenic 35.0%
GCGGAGAAAGGAAAATATAA+AGG + chr6_2:78571472-78571491 None:intergenic 35.0%
! TGTTAATTTGAAGCGGAGAA+AGG + chr6_2:78571484-78571503 None:intergenic 35.0%
TACCTGGTCTAGTAATTACA+AGG - chr6_2:78571556-78571575 Msa0929750:intron 35.0%
!!! ACTGCTGTGTTTTTAGGTAA+GGG + chr6_2:78571595-78571614 None:intergenic 35.0%
!! CTTTTCATTCTTTGGTGACT+GGG - chr6_2:78571692-78571711 Msa0929750:intron 35.0%
!! TTTTCATTCTTTGGTGACTG+GGG - chr6_2:78571693-78571712 Msa0929750:intron 35.0%
ATACTTCAATACTAGCAACC+AGG + chr6_2:78571876-78571895 None:intergenic 35.0%
TCAAAGCTAGGCATTTCAAA+AGG + chr6_2:78572078-78572097 None:intergenic 35.0%
CAACAATGAGTATCAAAGCT+AGG + chr6_2:78572090-78572109 None:intergenic 35.0%
CTACATTAAGTGATAAGCAG+CGG + chr6_2:78572261-78572280 None:intergenic 35.0%
ATGATATGTTGCTCTTAGAC+TGG - chr6_2:78572289-78572308 Msa0929750:intron 35.0%
AGAATCTATCATCCTGATCA+AGG - chr6_2:78572358-78572377 Msa0929750:intron 35.0%
!! GGCTGAAAATTTTGATGTTG+AGG - chr6_2:78572541-78572560 Msa0929750:intron 35.0%
ATTACATCATAGGTCTTCTC+AGG + chr6_2:78572677-78572696 None:intergenic 35.0%
ACGAGTGTAGATTACATCAT+AGG + chr6_2:78572687-78572706 None:intergenic 35.0%
CCTTACTTTGATGTATAGCA+TGG + chr6_2:78572714-78572733 None:intergenic 35.0%
CCATGCTATACATCAAAGTA+AGG - chr6_2:78572711-78572730 Msa0929750:intron 35.0%
GTAACTGTAAGCATGAATGA+AGG - chr6_2:78572801-78572820 Msa0929750:CDS 35.0%
ATTCCAAGCAATTGTTACAG+AGG + chr6_2:78572853-78572872 None:intergenic 35.0%
TCACTTTCAACCTAGAGTTT+AGG + chr6_2:78572885-78572904 None:intergenic 35.0%
! ACTCTAGGTTGAAAGTGATT+TGG - chr6_2:78572887-78572906 Msa0929750:intron 35.0%
TTTACGAGTAATAAGGTGGA+TGG + chr6_2:78572919-78572938 None:intergenic 35.0%
CTCTCCATTAAGAAGAATTC+TGG - chr6_2:78572996-78573015 Msa0929750:CDS 35.0%
GAGTACATTGCAGAATACAA+AGG + chr6_2:78573142-78573161 None:intergenic 35.0%
TTGTATTCTGCAATGTACTC+TGG - chr6_2:78573142-78573161 Msa0929750:intron 35.0%
! TTTTACAAGTGGTTGAAACC+TGG - chr6_2:78573200-78573219 Msa0929750:intron 35.0%
TTTGCTGAATACATCAAGGA+AGG - chr6_2:78573278-78573297 Msa0929750:intron 35.0%
AGTGTCAGCTGAAATCAAAT+GGG + chr6_2:78573368-78573387 None:intergenic 35.0%
TAGTGTCAGCTGAAATCAAA+TGG + chr6_2:78573369-78573388 None:intergenic 35.0%
TGGATTTGATGTCATTGTTG+AGG - chr6_2:78573457-78573476 Msa0929750:intron 35.0%
! ATCAGGTTTGTTTGATCCTT+TGG - chr6_2:78573489-78573508 Msa0929750:intron 35.0%
ATCAGTGATTTCAGCAATGT+GGG - chr6_2:78573646-78573665 Msa0929750:intron 35.0%
GGATGACTACAATGAAATTG+TGG - chr6_2:78573755-78573774 Msa0929750:intron 35.0%
ACAATGAAATTGTGGAGAGA+TGG - chr6_2:78573763-78573782 Msa0929750:intron 35.0%
TAGGAAAACTACTTTCACAC+TGG + chr6_2:78573903-78573922 None:intergenic 35.0%
TCTTCTCAAAGATCCAAATG+AGG + chr6_2:78574030-78574049 None:intergenic 35.0%
!! TTGGTTTTTCAACAAGGAGA+TGG + chr6_2:78574078-78574097 None:intergenic 35.0%
CGATTCAAATCCTTACTAGT+TGG + chr6_2:78574097-78574116 None:intergenic 35.0%
TTGAGAAACTCCTGGATCTA+CGG + chr6_2:78568531-78568550 None:intergenic 40.0%
TGAGTGAGTGACATAATACC+TGG + chr6_2:78568633-78568652 None:intergenic 40.0%
GGCTACTAAATGGTAGATGA+TGG + chr6_2:78569131-78569150 None:intergenic 40.0%
AGTGTGGAAGTTTGAAAACG+GGG + chr6_2:78569208-78569227 None:intergenic 40.0%
AGGAGTCCAAAGTATAAGTG+TGG + chr6_2:78569224-78569243 None:intergenic 40.0%
AGGTACGTAATGACATTGAC+AGG + chr6_2:78569411-78569430 None:intergenic 40.0%
TCCTTCATATTCTGGTAGCA+GGG + chr6_2:78569530-78569549 None:intergenic 40.0%
TTCCTTCATATTCTGGTAGC+AGG + chr6_2:78569531-78569550 None:intergenic 40.0%
TCCGGTAAATCTTCCAATAC+CGG + chr6_2:78569575-78569594 None:intergenic 40.0%
TGGAAGATTTACCGGAGAAT+TGG - chr6_2:78569579-78569598 Msa0929750:intron 40.0%
GTTCTACAGAACGTTATGAG+TGG + chr6_2:78569759-78569778 None:intergenic 40.0%
! AGAAACATCCATCTTTGGAG+AGG + chr6_2:78569834-78569853 None:intergenic 40.0%
CCTTCAGAAACATCCATCTT+TGG + chr6_2:78569839-78569858 None:intergenic 40.0%
! CCAAAGATGGATGTTTCTGA+AGG - chr6_2:78569836-78569855 Msa0929750:intron 40.0%
TTCCCAATGCTGTTAAACAC+GGG - chr6_2:78570255-78570274 Msa0929750:intron 40.0%
TACCCGTGTTTAACAGCATT+GGG + chr6_2:78570260-78570279 None:intergenic 40.0%
ACTATAGCACTGTTGTGTAG+TGG + chr6_2:78570299-78570318 None:intergenic 40.0%
AGCATATTGCGGAACAATAG+TGG - chr6_2:78570358-78570377 Msa0929750:intron 40.0%
AGCACCAAGGGAAAAACAAA+AGG + chr6_2:78570476-78570495 None:intergenic 40.0%
ATTGGTGGAAACAGGATTCT+CGG + chr6_2:78570562-78570581 None:intergenic 40.0%
AATCCTGTTTCCACCAATCT+GGG - chr6_2:78570564-78570583 Msa0929750:intron 40.0%
TTCTCTTTGAATCCCCAGAT+TGG + chr6_2:78570580-78570599 None:intergenic 40.0%
! GGAACCCAGATTTTACACAA+AGG - chr6_2:78570622-78570641 Msa0929750:intron 40.0%
AATAATCTGGCAGAGACCAA+GGG + chr6_2:78570672-78570691 None:intergenic 40.0%
!!! TTAACGGGAGTGTTTTGTGA+TGG - chr6_2:78570809-78570828 Msa0929750:intron 40.0%
!! GGAGTGTTTTGTGATGGTAA+AGG - chr6_2:78570815-78570834 Msa0929750:intron 40.0%
! GTGTTTTGTGATGGTAAAGG+TGG - chr6_2:78570818-78570837 Msa0929750:intron 40.0%
GAGACACCAACCGTAAAATT+TGG + chr6_2:78570867-78570886 None:intergenic 40.0%
GTAGGCAAATAATACCCTGT+TGG - chr6_2:78571049-78571068 Msa0929750:intron 40.0%
TGCATGAACAAAGGAGAAGA+CGG + chr6_2:78571090-78571109 None:intergenic 40.0%
TGCCATATGAGTGATATCTC+TGG - chr6_2:78571123-78571142 Msa0929750:intron 40.0%
GCCATATGAGTGATATCTCT+GGG - chr6_2:78571124-78571143 Msa0929750:intron 40.0%
TCCCAGAGATATCACTCATA+TGG + chr6_2:78571128-78571147 None:intergenic 40.0%
TTCCTTTGAGCTTTCTCTTG+TGG - chr6_2:78571149-78571168 Msa0929750:intron 40.0%
TCCTTTGAGCTTTCTCTTGT+GGG - chr6_2:78571150-78571169 Msa0929750:intron 40.0%
! TTTTCATGGTGCAGATTTGC+TGG - chr6_2:78571308-78571327 Msa0929750:intron 40.0%
!! GATTTGCTGGATATGGCAAA+AGG - chr6_2:78571321-78571340 Msa0929750:intron 40.0%
! TTTATTAGCACTGGAGGACT+TGG - chr6_2:78571442-78571461 Msa0929750:CDS 40.0%
! ATGTTCCGTTGTCATTTACC+TGG - chr6_2:78571540-78571559 Msa0929750:intron 40.0%
CTAGACCAGGTAAATGACAA+CGG + chr6_2:78571548-78571567 None:intergenic 40.0%
CACCTTGTAATTACTAGACC+AGG + chr6_2:78571561-78571580 None:intergenic 40.0%
!!! GACTGCTGTGTTTTTAGGTA+AGG + chr6_2:78571596-78571615 None:intergenic 40.0%
ACGTGTGCACAAGAAATAGT+TGG - chr6_2:78571655-78571674 Msa0929750:intron 40.0%
CCAGTCACCAAAGAATGAAA+AGG + chr6_2:78571694-78571713 None:intergenic 40.0%
!! CCTTTTCATTCTTTGGTGAC+TGG - chr6_2:78571691-78571710 Msa0929750:intron 40.0%
TGCATGTATGATGCCATACT+TGG - chr6_2:78572312-78572331 Msa0929750:intron 40.0%
AAAGGAACTTGTAGCTAAGC+TGG - chr6_2:78572454-78572473 Msa0929750:intron 40.0%
!! AAAGTACTGGATGTTGGTTG+TGG - chr6_2:78572494-78572513 Msa0929750:intron 40.0%
GGGAAATCACATTTATGGAG+AGG + chr6_2:78572580-78572599 None:intergenic 40.0%
AGCACGGGAAATCACATTTA+TGG + chr6_2:78572585-78572604 None:intergenic 40.0%
CTTACAGTTACATACACCTG+GGG + chr6_2:78572792-78572811 None:intergenic 40.0%
GCTTACAGTTACATACACCT+GGG + chr6_2:78572793-78572812 None:intergenic 40.0%
TGCTTACAGTTACATACACC+TGG + chr6_2:78572794-78572813 None:intergenic 40.0%
CAAGCAATTGTTACAGAGGA+AGG + chr6_2:78572849-78572868 None:intergenic 40.0%
CTTCCTCTGTAACAATTGCT+TGG - chr6_2:78572847-78572866 Msa0929750:CDS 40.0%
TGCAAGTGTAAGAACCGAAA+AGG + chr6_2:78572949-78572968 None:intergenic 40.0%
CATTGCAGAATACAAAGGTC+AGG + chr6_2:78573137-78573156 None:intergenic 40.0%
!! ATGTACTCTGGATTTGTTGC+AGG - chr6_2:78573154-78573173 Msa0929750:intron 40.0%
GTAATTAGAAGTTGACCTCC+AGG + chr6_2:78573221-78573240 None:intergenic 40.0%
! ACTGATTACTGCAAAAGTGC+TGG - chr6_2:78573239-78573258 Msa0929750:intron 40.0%
GCTCGTATTCTTTCATGTCA+TGG + chr6_2:78573316-78573335 None:intergenic 40.0%
TGACATGAAAGAATACGAGC+AGG - chr6_2:78573316-78573335 Msa0929750:intron 40.0%
!! ATCCTTTGGTCTAGTTTGCT+TGG - chr6_2:78573503-78573522 Msa0929750:intron 40.0%
TACCAAGCAAACTAGACCAA+AGG + chr6_2:78573508-78573527 None:intergenic 40.0%
CATCAGTGATTTCAGCAATG+TGG - chr6_2:78573645-78573664 Msa0929750:intron 40.0%
TGAAATTGTGGAGAGATGGA+AGG - chr6_2:78573767-78573786 Msa0929750:intron 40.0%
ATAATAGCAAGAACTGCAGC+AGG + chr6_2:78573874-78573893 None:intergenic 40.0%
GGAGATGGAAAACAAGATGA+GGG + chr6_2:78574063-78574082 None:intergenic 40.0%
AGGAGATGGAAAACAAGATG+AGG + chr6_2:78574064-78574083 None:intergenic 40.0%
GGTAGATTGTGTGGTGTGAA+GGG - chr6_2:78568437-78568456 Msa0929750:three_prime_UTR 45.0%
GATCGATTAATGCAGCAGAG+AGG - chr6_2:78568493-78568512 Msa0929750:three_prime_UTR 45.0%
GTAGATCCAGGAGTTTCTCA+AGG - chr6_2:78568530-78568549 Msa0929750:three_prime_UTR 45.0%
ATTAAGTGCCTTCGATAGCG+AGG + chr6_2:78568561-78568580 None:intergenic 45.0%
CATAATACCTGGTGAAGCCA+TGG + chr6_2:78568622-78568641 None:intergenic 45.0%
CTTGTCGAGATCAGAAGCTT+TGG + chr6_2:78568810-78568829 None:intergenic 45.0%
CAAAGCTTCTGATCTCGACA+AGG - chr6_2:78568808-78568827 Msa0929750:CDS 45.0%
! ACAAGTAAGAGCATGACGTC+AGG - chr6_2:78569319-78569338 Msa0929750:CDS 45.0%
TCCCTGCTACCAGAATATGA+AGG - chr6_2:78569526-78569545 Msa0929750:intron 45.0%
TCAGTTATTGAGCTTGGAGC+CGG - chr6_2:78569553-78569572 Msa0929750:intron 45.0%
! GCCGGTATTGGAAGATTTAC+CGG - chr6_2:78569571-78569590 Msa0929750:intron 45.0%
GACATCAGCGCACAAAAACT+TGG + chr6_2:78569810-78569829 None:intergenic 45.0%
TGATGTCACCTCTCCAAAGA+TGG - chr6_2:78569823-78569842 Msa0929750:intron 45.0%
AACTGTGGAGTAATTGCCCA+TGG - chr6_2:78570018-78570037 Msa0929750:CDS 45.0%
! CAGCATTGGGAAATACTACG+CGG + chr6_2:78570247-78570266 None:intergenic 45.0%
CTACCCGTGTTTAACAGCAT+TGG + chr6_2:78570261-78570280 None:intergenic 45.0%
ATGCTGTTAAACACGGGTAG+TGG - chr6_2:78570261-78570280 Msa0929750:intron 45.0%
! GTGTATAGTGTGGCGGAATT+TGG + chr6_2:78570389-78570408 None:intergenic 45.0%
!!! TGTTTTTCCCTTGGTGCTTC+AGG - chr6_2:78570478-78570497 Msa0929750:intron 45.0%
! TTCTCAACCTGAAGCACCAA+GGG + chr6_2:78570488-78570507 None:intergenic 45.0%
! ATTCTCAACCTGAAGCACCA+AGG + chr6_2:78570489-78570508 None:intergenic 45.0%
GAATCCTGTTTCCACCAATC+TGG - chr6_2:78570563-78570582 Msa0929750:intron 45.0%
ATCCTGTTTCCACCAATCTG+GGG - chr6_2:78570565-78570584 Msa0929750:intron 45.0%
TCTTTGAATCCCCAGATTGG+TGG + chr6_2:78570577-78570596 None:intergenic 45.0%
CAATAATCTGGCAGAGACCA+AGG + chr6_2:78570673-78570692 None:intergenic 45.0%
!! TGATGGTAAAGGTGGGCTAT+AGG - chr6_2:78570826-78570845 Msa0929750:intron 45.0%
!! TAAAGGTGGGCTATAGGTCA+TGG - chr6_2:78570832-78570851 Msa0929750:intron 45.0%
!! AAAGGTGGGCTATAGGTCAT+GGG - chr6_2:78570833-78570852 Msa0929750:intron 45.0%
GTCTTCTCCTTTGTTCATGC+AGG - chr6_2:78571089-78571108 Msa0929750:intron 45.0%
! CTTGTGGGCTGTAAATGCAT+TGG - chr6_2:78571165-78571184 Msa0929750:intron 45.0%
!! TGGTGCAGATTTGCTGGATA+TGG - chr6_2:78571314-78571333 Msa0929750:intron 45.0%
TTACGATATGAGCGCGTGTA+TGG - chr6_2:78571412-78571431 Msa0929750:intron 45.0%
CTCCAGTGCTAATAAAGCCT+TGG + chr6_2:78571438-78571457 None:intergenic 45.0%
!! CAAGGCTTTATTAGCACTGG+AGG - chr6_2:78571436-78571455 Msa0929750:CDS 45.0%
GATAAGCAGCGGTGAATCTT+TGG + chr6_2:78572250-78572269 None:intergenic 45.0%
TTCTTGGGCAGAAACGACAA+AGG - chr6_2:78572436-78572455 Msa0929750:intron 45.0%
! AAAGCCTGGTCAGAAAGTAC+TGG - chr6_2:78572481-78572500 Msa0929750:intron 45.0%
ACATCCAGTACTTTCTGACC+AGG + chr6_2:78572488-78572507 None:intergenic 45.0%
!! GGTCAGAAAGTACTGGATGT+TGG - chr6_2:78572488-78572507 Msa0929750:intron 45.0%
GATAGCACGTTCAATAGCAC+GGG + chr6_2:78572600-78572619 None:intergenic 45.0%
CGATAGCACGTTCAATAGCA+CGG + chr6_2:78572601-78572620 None:intergenic 45.0%
! CGTGCTATTGAACGTGCTAT+CGG - chr6_2:78572599-78572618 Msa0929750:intron 45.0%
!! AGCTTTATCCTTTTAGCCCC+AGG - chr6_2:78572773-78572792 Msa0929750:CDS 45.0%
TACATACACCTGGGGCTAAA+AGG + chr6_2:78572784-78572803 None:intergenic 45.0%
! GGTTGAAAGTGATTTGGCAG+TGG - chr6_2:78572893-78572912 Msa0929750:intron 45.0%
TACAAGTGGTTGAAACCTGG+AGG - chr6_2:78573203-78573222 Msa0929750:intron 45.0%
GCTGAATACATCAAGGAAGG+AGG - chr6_2:78573281-78573300 Msa0929750:intron 45.0%
TGTTGAGGATCGAACTGATC+AGG - chr6_2:78573472-78573491 Msa0929750:intron 45.0%
GTTTGTGAAAACACTGCAGC+AGG - chr6_2:78573588-78573607 Msa0929750:intron 45.0%
!!! TTTTTTTTTTTTATATACAT+AGG - chr6_2:78569498-78569517 Msa0929750:intron 5.0%
GATTGTGTGGTGTGAAGGGT+AGG - chr6_2:78568441-78568460 Msa0929750:three_prime_UTR 50.0%
GAGCTTCTAACCGTAGATCC+AGG - chr6_2:78568518-78568537 Msa0929750:three_prime_UTR 50.0%
CATTCTTCCATGGCTTCACC+AGG - chr6_2:78568612-78568631 Msa0929750:three_prime_UTR 50.0%
! TTGTGCTGATCTCTCTGTCG+AGG - chr6_2:78568769-78568788 Msa0929750:exon 50.0%
CGACAAGGAAGAAAGACCTG+AGG - chr6_2:78568823-78568842 Msa0929750:CDS 50.0%
ATCCACGGGTGAACTGAAGA+GGG + chr6_2:78568987-78569006 None:intergenic 50.0%
ATTGAGCTTGGAGCCGGTAT+TGG - chr6_2:78569559-78569578 Msa0929750:intron 50.0%
AGCTTTCAGCGCCAATTCTC+CGG + chr6_2:78569593-78569612 None:intergenic 50.0%
GCTGAAAGCTGGTCAATTGC+TGG - chr6_2:78569603-78569622 Msa0929750:intron 50.0%
ATCCCCAGATTGGTGGAAAC+AGG + chr6_2:78570570-78570589 None:intergenic 50.0%
GCCCACAAGAGAAAGCTCAA+AGG + chr6_2:78571154-78571173 None:intergenic 50.0%
!! GGCCAAGGCTTTATTAGCAC+TGG - chr6_2:78571433-78571452 Msa0929750:CDS 50.0%
! GCTGCGACTGCTGTGTTTTT+AGG + chr6_2:78571601-78571620 None:intergenic 50.0%
GCTAAGCTGGAACTAAAGCC+TGG - chr6_2:78572467-78572486 Msa0929750:intron 50.0%
! CTGGATGTTGGTTGTGGTGT+TGG - chr6_2:78572500-78572519 Msa0929750:intron 50.0%
! GATGTTGGTTGTGGTGTTGG+CGG - chr6_2:78572503-78572522 Msa0929750:intron 50.0%
TGGCGGAGGTGATTTCTACA+TGG - chr6_2:78572520-78572539 Msa0929750:intron 50.0%
AATTGCTCTCGAGAGCCAGA+AGG - chr6_2:78573615-78573634 Msa0929750:intron 50.0%
CACTGATGAAGTCGTCCTTC+TGG + chr6_2:78573633-78573652 None:intergenic 50.0%
ATGGAAGGCGAAGCAGATCA+GGG - chr6_2:78573782-78573801 Msa0929750:intron 50.0%
TGTGGTGTGAAGGGTAGGCA+AGG - chr6_2:78568446-78568465 Msa0929750:three_prime_UTR 55.0%
GCGAGACCTTGAGAAACTCC+TGG + chr6_2:78568539-78568558 None:intergenic 55.0%
AAGATGAGGAGACGGACCTC+AGG + chr6_2:78568842-78568861 None:intergenic 55.0%
CATCCACGGGTGAACTGAAG+AGG + chr6_2:78568988-78569007 None:intergenic 55.0%
! GGAGAATTGGCGCTGAAAGC+TGG - chr6_2:78569592-78569611 Msa0929750:intron 55.0%
! AGCTGGTCAATTGCTGGCTG+TGG - chr6_2:78569609-78569628 Msa0929750:intron 55.0%
CTGGGTTCCCTGTAGTGAGT+AGG + chr6_2:78570611-78570630 None:intergenic 55.0%
TATGAGCGCGTGTATGGCCA+AGG - chr6_2:78571418-78571437 Msa0929750:intron 55.0%
! TCAGCGAGAAGCGTGTGATC+AGG - chr6_2:78572023-78572042 Msa0929750:CDS 55.0%
CTGCAGATGCTGGAGAATGC+TGG - chr6_2:78573437-78573456 Msa0929750:intron 55.0%
GATGGAAGGCGAAGCAGATC+AGG - chr6_2:78573781-78573800 Msa0929750:intron 55.0%
TGGAAGGCGAAGCAGATCAG+GGG - chr6_2:78573783-78573802 Msa0929750:intron 55.0%
AAGCAGATCAGGGGTGAACG+AGG - chr6_2:78573792-78573811 Msa0929750:intron 55.0%
AGCAGATCAGGGGTGAACGA+GGG - chr6_2:78573793-78573812 Msa0929750:intron 55.0%
TGAACGAGGGGAGCAGAAGT+GGG - chr6_2:78573806-78573825 Msa0929750:CDS 55.0%
AGGTCTCGCCTCGCTATCGA+AGG - chr6_2:78568550-78568569 Msa0929750:three_prime_UTR 60.0%
CTCCCTCTTCAGTTCACCCG+TGG - chr6_2:78568982-78569001 Msa0929750:CDS 60.0%
!! GTTGGTTGTGGTGTTGGCGG+AGG - chr6_2:78572506-78572525 Msa0929750:intron 60.0%
GCAGATCAGGGGTGAACGAG+GGG - chr6_2:78573794-78573813 Msa0929750:intron 60.0%
GTGAACGAGGGGAGCAGAAG+TGG - chr6_2:78573805-78573824 Msa0929750:CDS 60.0%
GAACGAGGGGAGCAGAAGTG+GGG - chr6_2:78573807-78573826 Msa0929750:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 78568437 78574205 78568437 ID=Msa0929750;Name=Msa0929750
chr6_2 mRNA 78568437 78574205 78568437 ID=Msa0929750-mRNA-1;Parent=Msa0929750;Name=Msa0929750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=184|1|1|1|1|1|12|351|493
chr6_2 exon 78568437 78568886 78568437 ID=Msa0929750-mRNA-1:exon:13229;Parent=Msa0929750-mRNA-1
chr6_2 exon 78568979 78569053 78568979 ID=Msa0929750-mRNA-1:exon:13228;Parent=Msa0929750-mRNA-1
chr6_2 exon 78569149 78569199 78569149 ID=Msa0929750-mRNA-1:exon:13227;Parent=Msa0929750-mRNA-1
chr6_2 exon 78569305 78569466 78569305 ID=Msa0929750-mRNA-1:exon:13226;Parent=Msa0929750-mRNA-1
chr6_2 exon 78569915 78570195 78569915 ID=Msa0929750-mRNA-1:exon:13225;Parent=Msa0929750-mRNA-1
chr6_2 exon 78571179 78571320 78571179 ID=Msa0929750-mRNA-1:exon:13224;Parent=Msa0929750-mRNA-1
chr6_2 exon 78571421 78571531 78571421 ID=Msa0929750-mRNA-1:exon:13223;Parent=Msa0929750-mRNA-1
chr6_2 exon 78571999 78572142 78571999 ID=Msa0929750-mRNA-1:exon:13222;Parent=Msa0929750-mRNA-1
chr6_2 exon 78572729 78572866 78572729 ID=Msa0929750-mRNA-1:exon:13221;Parent=Msa0929750-mRNA-1
chr6_2 exon 78572985 78573122 78572985 ID=Msa0929750-mRNA-1:exon:13220;Parent=Msa0929750-mRNA-1
chr6_2 exon 78573798 78573925 78573798 ID=Msa0929750-mRNA-1:exon:13219;Parent=Msa0929750-mRNA-1
chr6_2 exon 78574009 78574205 78574009 ID=Msa0929750-mRNA-1:exon:13218;Parent=Msa0929750-mRNA-1
chr6_2 five_prime_UTR 78574022 78574205 78574022 ID=Msa0929750-mRNA-1:five_prime_utr;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78574009 78574021 78574009 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78573798 78573925 78573798 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78572985 78573122 78572985 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78572729 78572866 78572729 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78571999 78572142 78571999 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78571421 78571531 78571421 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78571179 78571320 78571179 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78569915 78570195 78569915 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78569305 78569466 78569305 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78569149 78569199 78569149 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78568979 78569053 78568979 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 CDS 78568788 78568886 78568788 ID=Msa0929750-mRNA-1:cds;Parent=Msa0929750-mRNA-1
chr6_2 three_prime_UTR 78568437 78568787 78568437 ID=Msa0929750-mRNA-1:three_prime_utr;Parent=Msa0929750-mRNA-1
Gene Sequence

>Msa0929750

ATGGCTTCACCAGGTATGACGATGAGTGATGAACGTGAAATTCAGAAATCATACTGGATTCAGCATTGTGCTGATCTCTCTGTCGAGGCTATGATGCTTGATTCCAAAGCTTCTGATCTCGACAAGGAAGAAAGACCTGAGGTACTTTCCCTGCTACCAGAATATGAAGGAAAATCAGTTATTGAGCTTGGAGCCGGTATTGGAAGATTTACCGGAGAATTGGCGCTGAAAGCTGGTCAATTGCTGGCTGTGGACTTCATTGAGAGTGCAATAAAGAAGAACGAAAGCATTAACGGACACTACAAAAATGCCAAGTTTTTGTGCGCTGATGTCACCTCTCCAAAGATGGATGTTTCTGAAGGATCTGTTGATGTGATTTTCTCAAATTGGTTACTGATGTATCTTTCAGATAATGAGGTTGAGAATTTAGCAAAAAGAATGATGAAATGGTTGAAAGATGGTGGATATATATTCTTCCGAGAATCCTGTTTCCACCAATCTGGGGATTCAAAGAGAAATTACAATCCTACTCACTACAGGGAACCCAGATTTTACACAAAGGTATTTAAACAATGCCATATGAGTGATATCTCTGGGAATTCCTTTGAGCTTTCTCTTGTGGGCTGTAAATGCATTGGAGCATATGTTCGAAATAAGAAGAATCAAAACCAGATTTGCTGGATATGGCAAAAGGTTAGATCACATGATGATAGGGGATTCCAGAAGTTCTTAGATAGAGTTGAATATAGTGAGAAGCGTATTTTACGATATGAGCGCGTGTATGGCCAAGGCTTTATTAGCACTGGAGGACTTGAAACGACAAAGGAACTTGTAGCTAAGCTGGAACTAAAGCCTGGTCAGAAAGTACTGGATGTTGGTTGTGGTGTTGGCGGAGGTGATTTCTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGGTGTAGACCTCTCCATAAATGTGATTTCCCGTGCTATTGAACGTGCTATCGGACTGAAATACACTGTTGAATTTGATTGTGCTGATTGCTCCAAAAAAACATATCCTGAGAAGACCTATGATGTAATCTACACTCGTGATGCCATGCTATACATCAAAGACAAACCAACATTATTTAGATCATTTTACAAGTGGTTGAAACCTGGAGGTCAACTTCTAATTACTGATTACTGCAAAAGTGCTGGAAGTCCATCTTCAGAATTTGCTGAATACATCAAGGAAGGAGGATATTATATCCATGACATGAAAGAATACGAGCAGATGCTGGAGAATGCTGGATTTGATGTCATTGTTGAGGATCGAACTGATCAGTTTGTGAAAACACTGCAGCAGGAGCTAATTGCTCTCGAGAGCCAGAAGGACGACTTCATCAGTGATTTCAGCAATGATGACTACAATGAAATTGTGGAGAGATGGAAGGCGAAGCAGATCAGGGGTGAACGAGGGGAGCAGAAGTGGGGCTTGTTCATTGCCAAGAAAATATGA

Protein sequence

>Msa0929750

MASPGMTMSDEREIQKSYWIQHCADLSVEAMMLDSKASDLDKEERPEVLSLLPEYEGKSVIELGAGIGRFTGELALKAGQLLAVDFIESAIKKNESINGHYKNAKFLCADVTSPKMDVSEGSVDVIFSNWLLMYLSDNEVENLAKRMMKWLKDGGYIFFRESCFHQSGDSKRNYNPTHYREPRFYTKVFKQCHMSDISGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVRSHDDRGFQKFLDRVEYSEKRILRYERVYGQGFISTGGLETTKELVAKLELKPGQKVLDVGCGVGGGDFYMAENFDVEVVGVDLSINVISRAIERAIGLKYTVEFDCADCSKKTYPEKTYDVIYTRDAMLYIKDKPTLFRSFYKWLKPGGQLLITDYCKSAGSPSSEFAEYIKEGGYYIHDMKEYEQMLENAGFDVIVEDRTDQFVKTLQQELIALESQKDDFISDFSNDDYNEIVERWKAKQIRGERGEQKWGLFIAKKI*