Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575850 | XP_003631124.2 | 97.976 | 494 | 9 | 1 | 1 | 493 | 1 | 494 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575850 | sp|Q9M571|PEAMT_SPIOL | 72.672 | 494 | 134 | 1 | 1 | 493 | 1 | 494 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575850 | G7LE68 | 97.976 | 494 | 9 | 1 | 1 | 493 | 1 | 494 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035400 | Msa0575850 | 0.810775 | 9.744923e-51 | -8.615850e-47 |
| Msa0038350 | Msa0575850 | -0.813952 | 1.972712e-51 | -8.615850e-47 |
| Msa0185640 | Msa0575850 | -0.834757 | 2.492327e-56 | -8.615850e-47 |
| Msa0200950 | Msa0575850 | -0.820580 | 6.362159e-53 | -8.615850e-47 |
| Msa0377280 | Msa0575850 | 0.818692 | 1.716338e-52 | -8.615850e-47 |
| Msa0404690 | Msa0575850 | 0.816886 | 4.387723e-52 | -8.615850e-47 |
| Msa0462590 | Msa0575850 | 0.807720 | 4.403812e-50 | -8.615850e-47 |
| Msa0467900 | Msa0575850 | -0.805576 | 1.248592e-49 | -8.615850e-47 |
| Msa0258670 | Msa0575850 | -0.811044 | 8.525062e-51 | -8.615850e-47 |
| Msa0308570 | Msa0575850 | 0.801994 | 6.924419e-49 | -8.615850e-47 |
| Msa0342340 | Msa0575850 | -0.843732 | 1.169525e-58 | -8.615850e-47 |
| Msa0358170 | Msa0575850 | 0.812342 | 4.448842e-51 | -8.615850e-47 |
| Msa0487490 | Msa0575850 | 0.809038 | 2.305230e-50 | -8.615850e-47 |
| Msa0540070 | Msa0575850 | 0.806032 | 1.001456e-49 | -8.615850e-47 |
| Msa0575850 | Msa0576240 | 0.970415 | 1.392395e-131 | -8.615850e-47 |
| Msa0575850 | Msa0583740 | 0.801200 | 1.007299e-48 | -8.615850e-47 |
| Msa0575850 | Msa0761800 | 0.801255 | 9.815187e-49 | -8.615850e-47 |
| Msa0575850 | Msa0828570 | 0.830823 | 2.363129e-55 | -8.615850e-47 |
| Msa0575850 | Msa0929750 | 0.966728 | 2.610672e-126 | -8.615850e-47 |
| Msa0575850 | Msa0938420 | 0.824233 | 9.020088e-54 | -8.615850e-47 |
| Msa0575850 | Msa0949600 | 0.808421 | 3.122593e-50 | -8.615850e-47 |
| Msa0575850 | Msa0986350 | 0.808859 | 2.518360e-50 | -8.615850e-47 |
| Msa0575850 | Msa1046610 | 0.801181 | 1.016383e-48 | -8.615850e-47 |
| Msa0575850 | Msa1111630 | 0.838487 | 2.792794e-57 | -8.615850e-47 |
| Msa0575850 | Msa1167170 | 0.838049 | 3.622166e-57 | -8.615850e-47 |
| Msa0575850 | Msa1204980 | -0.844735 | 6.287212e-59 | -8.615850e-47 |
| Msa0575850 | Msa1205010 | -0.842578 | 2.373935e-58 | -8.615850e-47 |
| Msa0575850 | Msa1232270 | 0.805615 | 1.225704e-49 | -8.615850e-47 |
| Msa0575850 | Msa1252300 | 0.844815 | 5.985074e-59 | -8.615850e-47 |
| Msa0575850 | Msa1256540 | -0.838596 | 2.618659e-57 | -8.615850e-47 |
| Msa0575850 | Msa1296960 | -0.836344 | 9.889400e-57 | -8.615850e-47 |
| Msa0575850 | Msa1313050 | 0.851399 | 9.101980e-61 | -8.615850e-47 |
| Msa0575850 | Msa1336470 | 0.801683 | 8.019152e-49 | -8.615850e-47 |
| Msa0575850 | Msa1340530 | 0.811064 | 8.439776e-51 | -8.615850e-47 |
| Msa0575850 | Msa1453620 | 0.808313 | 3.292872e-50 | -8.615850e-47 |
| Msa0575850 | Msa1454290 | -0.804901 | 1.728965e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575850 | MtrunA17_Chr8g0393121 | 97.976 | 494 | 9 | 1 | 1 | 493 | 1 | 494 | 0.0 | 1002 |
| Msa0575850 | MtrunA17_Chr6g0478481 | 80.372 | 484 | 94 | 1 | 10 | 492 | 13 | 496 | 0.0 | 820 |
| Msa0575850 | MtrunA17_Chr3g0089671 | 31.707 | 164 | 103 | 4 | 277 | 431 | 86 | 249 | 1.56e-13 | 71.6 |
| Msa0575850 | MtrunA17_Chr4g0018381 | 27.966 | 118 | 83 | 1 | 284 | 399 | 75 | 192 | 5.13e-12 | 65.1 |
| Msa0575850 | MtrunA17_Chr1g0150551 | 29.565 | 115 | 79 | 1 | 287 | 399 | 130 | 244 | 1.54e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575850 | AT1G48600.2 | 72.008 | 493 | 134 | 2 | 1 | 492 | 1 | 490 | 0.0 | 757 |
| Msa0575850 | AT3G18000.1 | 71.694 | 484 | 136 | 1 | 10 | 492 | 7 | 490 | 0.0 | 755 |
| Msa0575850 | AT1G73600.2 | 70.994 | 493 | 140 | 2 | 3 | 492 | 11 | 503 | 0.0 | 753 |
| Msa0575850 | AT1G73600.1 | 71.400 | 493 | 136 | 2 | 1 | 492 | 1 | 489 | 0.0 | 752 |
| Msa0575850 | AT1G48600.1 | 72.574 | 474 | 129 | 1 | 20 | 492 | 1 | 474 | 0.0 | 736 |
| Msa0575850 | AT5G13710.1 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 2.49e-14 | 74.7 |
| Msa0575850 | AT5G13710.2 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 2.49e-14 | 74.7 |
| Msa0575850 | AT1G64970.1 | 28.846 | 104 | 72 | 1 | 289 | 390 | 130 | 233 | 1.42e-11 | 66.2 |
Find 136 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCAACATACACATTATT+AGG | 0.167772 | 4_1:-79768517 | None:intergenic |
| TAATGATTGTTCTCCTCATT+TGG | 0.252000 | 4_1:+79768612 | Msa0575850:three_prime_UTR |
| AGCACGGGAAATCACATTTA+TGG | 0.261865 | 4_1:-79767183 | None:intergenic |
| TCCTTTGAGCTTTCTCTTGT+GGG | 0.273120 | 4_1:+79765750 | Msa0575850:CDS |
| CAACTCTATCCAAGAACTTC+TGG | 0.274824 | 4_1:-79765969 | None:intergenic |
| ACAAACCTTTGTGTAAAATC+TGG | 0.284632 | 4_1:-79765227 | None:intergenic |
| GTGAACGAGGGGAGCAGAAG+TGG | 0.305672 | 4_1:+79768403 | Msa0575850:CDS |
| GTTGAACAATAAATGTGTTT+TGG | 0.315616 | 4_1:+79768532 | Msa0575850:three_prime_UTR |
| GATGGAAGGCGAAGCAGATC+AGG | 0.322790 | 4_1:+79768379 | Msa0575850:CDS |
| CCTTCAGAAACATCCATCTT+TGG | 0.322834 | 4_1:-79764456 | None:intergenic |
| GAATCCTGTTTCCACCAATC+TGG | 0.329775 | 4_1:+79765163 | Msa0575850:CDS |
| CACTGATGAAGTCGTCCTTC+TGG | 0.335719 | 4_1:-79768228 | None:intergenic |
| CTTGTCGAGATCAGAAGCTT+TGG | 0.356843 | 4_1:-79763395 | None:intergenic |
| TGGTGCAGATTTGCTGGATA+TGG | 0.363415 | 4_1:+79765914 | Msa0575850:intron |
| TAGGGGATTCCAGAAGTTCT+TGG | 0.370705 | 4_1:+79765960 | Msa0575850:CDS |
| TGGAAGATTTACCGGAGAAT+TGG | 0.371460 | 4_1:+79764187 | Msa0575850:CDS |
| GCCGGTATTGGAAGATTTAC+CGG | 0.377974 | 4_1:+79764179 | Msa0575850:CDS |
| TTCCTTCATATTCTGGTAGC+AGG | 0.383460 | 4_1:-79764136 | None:intergenic |
| AGGTTAGATCACATAATGAT+AGG | 0.388397 | 4_1:+79765941 | Msa0575850:CDS |
| GCTGAAAGCTGGTCAATTGC+TGG | 0.390425 | 4_1:+79764211 | Msa0575850:CDS |
| ATCCCCAGATTGGTGGAAAC+AGG | 0.392051 | 4_1:-79765167 | None:intergenic |
| CTGTAGAACGAAAGCATTAA+CGG | 0.397285 | 4_1:+79764390 | Msa0575850:intron |
| TTCCTTTGAGCTTTCTCTTG+TGG | 0.410639 | 4_1:+79765749 | Msa0575850:CDS |
| AACCAACATCCAGTACTTTC+TGG | 0.412058 | 4_1:-79767091 | None:intergenic |
| TGTTGAGGATCGAACTGATC+AGG | 0.414212 | 4_1:+79768070 | Msa0575850:CDS |
| TTTATTAGCACTGGAGGACT+TGG | 0.419528 | 4_1:+79766042 | Msa0575850:CDS |
| ATTGAGCTTGGAGCCGGTAT+TGG | 0.420522 | 4_1:+79764167 | Msa0575850:CDS |
| GGAAAATCAGTTATTGAGCT+TGG | 0.426730 | 4_1:+79764155 | Msa0575850:CDS |
| TTACGATATGAGCGCGTGTA+TGG | 0.432033 | 4_1:+79766012 | Msa0575850:CDS |
| CTGGATGTTGGTTGTGGTGT+TGG | 0.442233 | 4_1:+79767101 | Msa0575850:CDS |
| GTGAAATTCAGAAATCATAC+TGG | 0.443496 | 4_1:+79763326 | Msa0575850:CDS |
| CGATTCAAATCCTTACTAGT+TGG | 0.443622 | 4_1:-79768692 | None:intergenic |
| GTTGGTTGTGGTGTTGGCGG+AGG | 0.443753 | 4_1:+79767107 | Msa0575850:CDS |
| ACTAAAAGAAATAGAGGTAA+AGG | 0.445953 | 4_1:-79768736 | None:intergenic |
| TTCTCTTTGAATCCCCAGAT+TGG | 0.446538 | 4_1:-79765177 | None:intergenic |
| TGCCATATGAGTGATATCTC+TGG | 0.446888 | 4_1:+79765723 | Msa0575850:CDS |
| GGCCAAGGCTTTATTAGCAC+TGG | 0.447921 | 4_1:+79766033 | Msa0575850:CDS |
| AGAAATAGAGGTAAAGGAAA+GGG | 0.447931 | 4_1:-79768730 | None:intergenic |
| CTGCAGATGCTGGAGAATGC+TGG | 0.456311 | 4_1:+79768035 | Msa0575850:intron |
| AATCCTGTTTCCACCAATCT+GGG | 0.456764 | 4_1:+79765164 | Msa0575850:CDS |
| TCCCAGAGATATCACTCATA+TGG | 0.459147 | 4_1:-79765725 | None:intergenic |
| CAAACCTTTGTGTAAAATCT+GGG | 0.462103 | 4_1:-79765226 | None:intergenic |
| AGCTTTCAGCGCCAATTCTC+CGG | 0.462761 | 4_1:-79764198 | None:intergenic |
| GGTTAGATCACATAATGATA+GGG | 0.466219 | 4_1:+79765942 | Msa0575850:CDS |
| AGAAATACTAAAAGAAATAG+AGG | 0.467849 | 4_1:-79768742 | None:intergenic |
| AAAGCCTGGCCAGAAAGTAC+TGG | 0.469018 | 4_1:+79767082 | Msa0575850:CDS |
| CATTCTTCCATGGCTTCACC+AGG | 0.473107 | 4_1:+79763200 | Msa0575850:exon |
| GGAGAATTGGCGCTGAAAGC+TGG | 0.475774 | 4_1:+79764200 | Msa0575850:CDS |
| ATTGGTGGAAACAGGATTCT+CGG | 0.477277 | 4_1:-79765159 | None:intergenic |
| TGAACGAGGGGAGCAGAAGT+GGG | 0.479207 | 4_1:+79768404 | Msa0575850:CDS |
| AGCTGGTCAATTGCTGGCTG+TGG | 0.479823 | 4_1:+79764217 | Msa0575850:CDS |
| ACGAGTGTAGATTACATCAT+AGG | 0.479962 | 4_1:-79767285 | None:intergenic |
| CGTGCTATTGAACGTGCTAT+CGG | 0.481806 | 4_1:+79767200 | Msa0575850:CDS |
| GTAATTAGAAGTTGACCTCC+AGG | 0.482434 | 4_1:-79767816 | None:intergenic |
| ATTACAATCCTACTCACTAC+AGG | 0.482810 | 4_1:+79765200 | Msa0575850:CDS |
| GTTTGTGAAAACACTGCAGC+AGG | 0.484254 | 4_1:+79768186 | Msa0575850:intron |
| TAAAATGATCTAAATAATGT+TGG | 0.485432 | 4_1:-79767780 | None:intergenic |
| GCTCGTATTCTTTCATGTCA+TGG | 0.486707 | 4_1:-79767911 | None:intergenic |
| CTTGTGGGCTGTAAATGCAT+TGG | 0.492972 | 4_1:+79765765 | Msa0575850:CDS |
| AAAGGAACTTGTAGCTAAGC+TGG | 0.495920 | 4_1:+79767055 | Msa0575850:CDS |
| CTCCAGTGCTAATAAAGCCT+TGG | 0.496405 | 4_1:-79766035 | None:intergenic |
| GCGAGACCTTGAGAAACTCC+TGG | 0.497412 | 4_1:-79763124 | None:intergenic |
| TCCGGTAAATCTTCCAATAC+CGG | 0.497820 | 4_1:-79764180 | None:intergenic |
| TCTTTGAATCCCCAGATTGG+TGG | 0.498788 | 4_1:-79765174 | None:intergenic |
| ATTACATCATAGGTCTTCTC+AGG | 0.499504 | 4_1:-79767275 | None:intergenic |
| TATTCAGCAAATTCTGAAGA+TGG | 0.499970 | 4_1:-79767864 | None:intergenic |
| CAACTAGTAAGGATTTGAAT+CGG | 0.499991 | 4_1:+79768693 | Msa0575850:three_prime_UTR |
| GCTAAGCTGGAACTAAAGCC+TGG | 0.509289 | 4_1:+79767068 | Msa0575850:CDS |
| GAGCTTCTAACCGTAGATCC+AGG | 0.511213 | 4_1:+79763106 | Msa0575850:five_prime_UTR |
| CCTTACTTTGATGTATAGCA+TGG | 0.513489 | 4_1:-79767312 | None:intergenic |
| GATGTTGGTTGTGGTGTTGG+CGG | 0.516899 | 4_1:+79767104 | Msa0575850:CDS |
| TCAGTTATTGAGCTTGGAGC+CGG | 0.519308 | 4_1:+79764161 | Msa0575850:CDS |
| ACTGATTACTGCAAAAGTGC+TGG | 0.520458 | 4_1:+79767837 | Msa0575850:CDS |
| AAGAAATAGAGGTAAAGGAA+AGG | 0.521522 | 4_1:-79768731 | None:intergenic |
| ACAATGAAATTGTGGAGAGA+TGG | 0.523489 | 4_1:+79768361 | Msa0575850:CDS |
| ATTCGCATTTCATTCTTCCA+TGG | 0.523985 | 4_1:+79763190 | Msa0575850:exon |
| AGAATTTGCTGAATACATCA+AGG | 0.524867 | 4_1:+79767872 | Msa0575850:CDS |
| GATTTGCTGGATATGGCAAA+AGG | 0.528860 | 4_1:+79765921 | Msa0575850:intron |
| GATGTATCTTTCAGATAATG+AGG | 0.530422 | 4_1:+79764512 | Msa0575850:CDS |
| TTGAGAAACTCCTGGATCTA+CGG | 0.530800 | 4_1:-79763116 | None:intergenic |
| ACATCCAGTACTTTCTGGCC+AGG | 0.532420 | 4_1:-79767086 | None:intergenic |
| ATAATAGCAAGAACTGCAGC+AGG | 0.534274 | 4_1:-79768469 | None:intergenic |
| CATTGAGAGTGCAATAAAGA+AGG | 0.534730 | 4_1:+79764244 | Msa0575850:CDS |
| TCCTTCATATTCTGGTAGCA+GGG | 0.535206 | 4_1:-79764135 | None:intergenic |
| GCCATATGAGTGATATCTCT+GGG | 0.536166 | 4_1:+79765724 | Msa0575850:CDS |
| CATAATACCTGGTGAAGCCA+TGG | 0.538535 | 4_1:-79763207 | None:intergenic |
| TGATGTCACCTCTCCAAAGA+TGG | 0.540164 | 4_1:+79764443 | Msa0575850:CDS |
| TCTTCTCAAAGATCCAAATG+AGG | 0.542001 | 4_1:-79768625 | None:intergenic |
| AAGCAGATCAGGGGTGAACG+AGG | 0.552850 | 4_1:+79768390 | Msa0575850:CDS |
| GGAGATGGAAAATAAGATGA+GGG | 0.556711 | 4_1:-79768658 | None:intergenic |
| ATGGAAGGCGAAGCAGATCA+GGG | 0.557359 | 4_1:+79768380 | Msa0575850:CDS |
| TATGAGCGCGTGTATGGCCA+AGG | 0.560692 | 4_1:+79766018 | Msa0575850:CDS |
| TGGCGGAGGTGATTTCTACA+TGG | 0.570395 | 4_1:+79767121 | Msa0575850:CDS |
| CCAAAGATGGATGTTTCTGA+AGG | 0.571313 | 4_1:+79764456 | Msa0575850:CDS |
| ATGAAATGGTTGAAAGATGG+TGG | 0.574449 | 4_1:+79765124 | Msa0575850:CDS |
| CTGGGTTCCCTGTAGTGAGT+AGG | 0.586374 | 4_1:-79765208 | None:intergenic |
| TAGGAAAACTACTTTCACAC+TGG | 0.587206 | 4_1:-79768498 | None:intergenic |
| TGGATTTGATGTCATTGTTG+AGG | 0.596748 | 4_1:+79768055 | Msa0575850:CDS |
| GATAGCACGTTCAATAGCAC+GGG | 0.597140 | 4_1:-79767198 | None:intergenic |
| ATGATGAAATGGTTGAAAGA+TGG | 0.599340 | 4_1:+79765121 | Msa0575850:CDS |
| GAACGAGGGGAGCAGAAGTG+GGG | 0.600599 | 4_1:+79768405 | Msa0575850:CDS |
| AGGAGATGGAAAATAAGATG+AGG | 0.600661 | 4_1:-79768659 | None:intergenic |
| GGATGACTACAATGAAATTG+TGG | 0.600685 | 4_1:+79768353 | Msa0575850:intron |
| CGATAGCACGTTCAATAGCA+CGG | 0.601134 | 4_1:-79767199 | None:intergenic |
| ATTAAGTGCCTTCGATAGCG+AGG | 0.603456 | 4_1:-79763146 | None:intergenic |
| AGGTCTCGCCTCGCTATCGA+AGG | 0.605259 | 4_1:+79763138 | Msa0575850:five_prime_UTR |
| AGAAACATCCATCTTTGGAG+AGG | 0.608120 | 4_1:-79764451 | None:intergenic |
| GCAGATCAGGGGTGAACGAG+GGG | 0.609433 | 4_1:+79768392 | Msa0575850:CDS |
| TTTGCTGAATACATCAAGGA+AGG | 0.610174 | 4_1:+79767876 | Msa0575850:CDS |
| AGCAGATCAGGGGTGAACGA+GGG | 0.610403 | 4_1:+79768391 | Msa0575850:CDS |
| GTTAGATCACATAATGATAG+GGG | 0.610923 | 4_1:+79765943 | Msa0575850:CDS |
| TTGTGTGGTGTGGTGTGAAG+AGG | 0.612194 | 4_1:+79763031 | Msa0575850:five_prime_UTR |
| CAAGGCTTTATTAGCACTGG+AGG | 0.615635 | 4_1:+79766036 | Msa0575850:CDS |
| GGCCAGAAAGTACTGGATGT+TGG | 0.619916 | 4_1:+79767089 | Msa0575850:CDS |
| CAAAGCTTCTGATCTCGACA+AGG | 0.622617 | 4_1:+79763396 | Msa0575850:CDS |
| AAATAAGAAGAATCAAAACC+AGG | 0.627133 | 4_1:+79765800 | Msa0575850:CDS |
| ATCCTGTTTCCACCAATCTG+GGG | 0.633940 | 4_1:+79765165 | Msa0575850:CDS |
| ATAAACGAAGGTAGATTGTG+TGG | 0.634907 | 4_1:+79763016 | None:intergenic |
| TGAAATTGTGGAGAGATGGA+AGG | 0.635643 | 4_1:+79768365 | Msa0575850:CDS |
| TTGTGCTGATCTCTCTGTCG+AGG | 0.638294 | 4_1:+79763357 | Msa0575850:CDS |
| TACAAGTGGTTGAAACCTGG+AGG | 0.640796 | 4_1:+79767801 | Msa0575850:CDS |
| AATTGCTCTCGAGAGCCAGA+AGG | 0.643480 | 4_1:+79768213 | Msa0575850:CDS |
| GTAGATCCAGGAGTTTCTCA+AGG | 0.643884 | 4_1:+79763118 | Msa0575850:five_prime_UTR |
| AAAGTACTGGATGTTGGTTG+TGG | 0.647499 | 4_1:+79767095 | Msa0575850:CDS |
| TCCCTGCTACCAGAATATGA+AGG | 0.647755 | 4_1:+79764134 | Msa0575850:CDS |
| GCTGAATACATCAAGGAAGG+AGG | 0.652193 | 4_1:+79767879 | Msa0575850:CDS |
| CGAAGGTAGATTGTGTGGTG+TGG | 0.655279 | 4_1:+79763021 | None:intergenic |
| GCCCACAAGAGAAAGCTCAA+AGG | 0.655286 | 4_1:-79765751 | None:intergenic |
| TTCTTGGGCAGAAACGACAA+AGG | 0.658742 | 4_1:+79767037 | Msa0575850:intron |
| TTACAATCCTACTCACTACA+GGG | 0.660434 | 4_1:+79765201 | Msa0575850:CDS |
| GGGAAATCACATTTATGGAG+AGG | 0.665644 | 4_1:-79767178 | None:intergenic |
| TGGAAGGCGAAGCAGATCAG+GGG | 0.665972 | 4_1:+79768381 | Msa0575850:CDS |
| GTGGTGTGGTGTGAAGAGGT+AGG | 0.669369 | 4_1:+79763035 | Msa0575850:five_prime_UTR |
| GTGGTGTGAAGAGGTAGGCA+AGG | 0.683026 | 4_1:+79763040 | Msa0575850:five_prime_UTR |
| GATCGATTAATGCAGCAGAG+AGG | 0.711666 | 4_1:+79763081 | Msa0575850:five_prime_UTR |
| CGACAAGGAAGAAAGACCTG+AGG | 0.732813 | 4_1:+79763411 | Msa0575850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTATTTTCATTTTATA+GGG | + | chr4_1:79763614-79763633 | Msa0575850:intron | 10.0% |
| !!! | ATTATCATTACATTTTATTT+TGG | + | chr4_1:79766332-79766351 | Msa0575850:intron | 10.0% |
| !!! | AAATTTTAAAACATATTGAT+TGG | + | chr4_1:79766594-79766613 | Msa0575850:intron | 10.0% |
| !!! | GAGAATTATTTTCATTTTAT+AGG | + | chr4_1:79763613-79763632 | Msa0575850:intron | 15.0% |
| !! | TAAATTAAAACCAAATGAAT+CGG | - | chr4_1:79763755-79763774 | None:intergenic | 15.0% |
| !! | AAAACAAAATGAAATGAAAA+AGG | - | chr4_1:79764034-79764053 | None:intergenic | 15.0% |
| !!! | ACAGTTTTTTTTTCTTTATT+CGG | + | chr4_1:79764561-79764580 | Msa0575850:intron | 15.0% |
| !! | GTAAATAAAAAAATCAACTT+TGG | + | chr4_1:79764664-79764683 | Msa0575850:intron | 15.0% |
| !!! | TTTTGTTTAATCTCAATTAT+TGG | + | chr4_1:79764815-79764834 | Msa0575850:intron | 15.0% |
| !! | TTTGTTTAATCTCAATTATT+GGG | + | chr4_1:79764816-79764835 | Msa0575850:intron | 15.0% |
| !!! | TTTTTAATCAAACAATAATC+TGG | - | chr4_1:79765285-79765304 | None:intergenic | 15.0% |
| !! | AAATTTCGTGTAATTATTAT+CGG | + | chr4_1:79765838-79765857 | Msa0575850:intron | 15.0% |
| !!! | TCATATAATTTTTTAGAACA+TGG | + | chr4_1:79766773-79766792 | Msa0575850:intron | 15.0% |
| !! | TAAAATGATCTAAATAATGT+TGG | - | chr4_1:79767783-79767802 | None:intergenic | 15.0% |
| !!! | CTTTTGTAATACTTTATTTT+AGG | + | chr4_1:79768291-79768310 | Msa0575850:intron | 15.0% |
| !!! | AATCAAAGCTTTTAAATTAA+GGG | - | chr4_1:79768326-79768345 | None:intergenic | 15.0% |
| !! | TCATTATTATTACGACATTA+AGG | - | chr4_1:79763265-79763284 | None:intergenic | 20.0% |
| !!! | ATTTTGATTAGACTATGAAT+TGG | - | chr4_1:79763901-79763920 | None:intergenic | 20.0% |
| !!! | ATAATTTTACTCAAACAAAC+TGG | + | chr4_1:79763953-79763972 | Msa0575850:intron | 20.0% |
| !!! | CAAATTTTATGGAAATATGT+GGG | - | chr4_1:79763991-79764010 | None:intergenic | 20.0% |
| !! | TTAACATGTTCTTAAATTCA+CGG | - | chr4_1:79764728-79764747 | None:intergenic | 20.0% |
| !! | ACTAGAATAATTATTTGCAA+TGG | - | chr4_1:79764784-79764803 | None:intergenic | 20.0% |
| !! | TTGTTTAATCTCAATTATTG+GGG | + | chr4_1:79764817-79764836 | Msa0575850:intron | 20.0% |
| !!! | AGCTGTTTTATTTAATCAAA+AGG | - | chr4_1:79765368-79765387 | None:intergenic | 20.0% |
| !!! | TCATTGGATTATATTTTGTA+AGG | + | chr4_1:79765592-79765611 | Msa0575850:intron | 20.0% |
| !! | AATTTCGTGTAATTATTATC+GGG | + | chr4_1:79765839-79765858 | Msa0575850:intron | 20.0% |
| !!! | TGTGTACAATAATATTTTCA+TGG | + | chr4_1:79765894-79765913 | Msa0575850:intron | 20.0% |
| !! | AATGAAAAGGTAGAAAATAT+TGG | - | chr4_1:79766281-79766300 | None:intergenic | 20.0% |
| !! | AATTATTATGTAATTGTACC+TGG | + | chr4_1:79766455-79766474 | Msa0575850:intron | 20.0% |
| !!! | ATTTTGATCAATCATTTTGT+TGG | + | chr4_1:79767623-79767642 | Msa0575850:intron | 20.0% |
| !!! | TATTTAGATCATTTTACAAG+TGG | + | chr4_1:79767787-79767806 | Msa0575850:CDS | 20.0% |
| !!! | CAATCAAAGCTTTTAAATTA+AGG | - | chr4_1:79768327-79768346 | None:intergenic | 20.0% |
| !! | AGAAATACTAAAAGAAATAG+AGG | - | chr4_1:79768745-79768764 | None:intergenic | 20.0% |
| ! | ATTAAGAAATGTGAAAGATG+AGG | - | chr4_1:79763444-79763463 | None:intergenic | 25.0% |
| ! | AGCTTAAGATGATAATATGA+TGG | - | chr4_1:79763551-79763570 | None:intergenic | 25.0% |
| ! | AAAATAATTCTCAACATCCA+CGG | - | chr4_1:79763605-79763624 | None:intergenic | 25.0% |
| ! | GGTATGATATATCAGATTAA+TGG | - | chr4_1:79763713-79763732 | None:intergenic | 25.0% |
| ! | GATATTGCAAAGAGAAAATT+AGG | - | chr4_1:79763847-79763866 | None:intergenic | 25.0% |
| !! | GCAAATTTTATGGAAATATG+TGG | - | chr4_1:79763992-79764011 | None:intergenic | 25.0% |
| ! | AACAATAACAATTCTCAGAA+TGG | - | chr4_1:79764286-79764305 | None:intergenic | 25.0% |
| !! | TTGATGTGATTTTCTCAAAT+TGG | + | chr4_1:79764484-79764503 | Msa0575850:CDS | 25.0% |
| ! | TTGTCAAATAGCTACTATAA+CGG | - | chr4_1:79764923-79764942 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAGCATATTG+CGG | + | chr4_1:79764947-79764966 | Msa0575850:intron | 25.0% |
| ! | CAAATTATAAGTGTATAGTG+TGG | - | chr4_1:79764999-79765018 | None:intergenic | 25.0% |
| ! | CACACTATACACTTATAATT+TGG | + | chr4_1:79764997-79765016 | Msa0575850:intron | 25.0% |
| ! | TTAACAAAACATGACTTAGT+TGG | + | chr4_1:79765036-79765055 | Msa0575850:intron | 25.0% |
| ! | TAGCAAAAAGAATGATGAAA+TGG | + | chr4_1:79765110-79765129 | Msa0575850:CDS | 25.0% |
| ! | AAAAAGATTGACATCAACTT+TGG | + | chr4_1:79765302-79765321 | Msa0575850:intron | 25.0% |
| ! | AAAAGATTGACATCAACTTT+GGG | + | chr4_1:79765303-79765322 | Msa0575850:intron | 25.0% |
| ! | AGTGTATGATTTCTATCTTA+TGG | + | chr4_1:79765334-79765353 | Msa0575850:intron | 25.0% |
| ! | ACATGTTTGAACCTAATTAA+CGG | + | chr4_1:79765393-79765412 | Msa0575850:intron | 25.0% |
| ! | AAATAAGAAGAATCAAAACC+AGG | + | chr4_1:79765800-79765819 | Msa0575850:CDS | 25.0% |
| !! | TCTAACATGTTAATTTGAAG+CGG | - | chr4_1:79766091-79766110 | None:intergenic | 25.0% |
| !! | TTTTCTACCTTTTCATTCTT+TGG | + | chr4_1:79766284-79766303 | Msa0575850:intron | 25.0% |
| ! | TAAGAGGAAGAATAATCAAA+TGG | - | chr4_1:79766399-79766418 | None:intergenic | 25.0% |
| ! | CATTACACGATAATTATAAG+AGG | - | chr4_1:79766415-79766434 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTTCAAGCTAT+TGG | + | chr4_1:79766553-79766572 | Msa0575850:intron | 25.0% |
| ! | CACAAACAAATATATCCATT+TGG | + | chr4_1:79766806-79766825 | Msa0575850:intron | 25.0% |
| ! | AAAGAAAAGAAATCCAAGTA+TGG | - | chr4_1:79766929-79766948 | None:intergenic | 25.0% |
| ! | TTATGAGTTGCTTAATTCTT+GGG | + | chr4_1:79767022-79767041 | Msa0575850:intron | 25.0% |
| ! | TAAAAGAATACCTAAACTCT+AGG | + | chr4_1:79767473-79767492 | Msa0575850:intron | 25.0% |
| ! | ATAACATTTGAGTAATAAGG+TGG | - | chr4_1:79767524-79767543 | None:intergenic | 25.0% |
| ! | GGAATAACATTTGAGTAATA+AGG | - | chr4_1:79767527-79767546 | None:intergenic | 25.0% |
| !! | ACTCAAATGTTATTCCTTTT+CGG | + | chr4_1:79767531-79767550 | Msa0575850:intron | 25.0% |
| ! | AAATCCAGAATTCTTCTTAA+TGG | - | chr4_1:79767601-79767620 | None:intergenic | 25.0% |
| ! | TACAAAGTACAGACATAAAA+AGG | - | chr4_1:79767660-79767679 | None:intergenic | 25.0% |
| !! | AATAACTTCATTGTTACTTG+TGG | + | chr4_1:79768157-79768176 | Msa0575850:intron | 25.0% |
| !!! | TAAAAGCTTTGATTGTTTTC+AGG | + | chr4_1:79768332-79768351 | Msa0575850:intron | 25.0% |
| !! | ATAAGCGAATCATATTTTCT+TGG | - | chr4_1:79768442-79768461 | None:intergenic | 25.0% |
| ! | TGTTCAACATACACATTATT+AGG | - | chr4_1:79768520-79768539 | None:intergenic | 25.0% |
| !! | GTTGAACAATAAATGTGTTT+TGG | + | chr4_1:79768532-79768551 | Msa0575850:three_prime_UTR | 25.0% |
| !! | GACATTTTTGTTAAGTATGT+TGG | + | chr4_1:79768589-79768608 | Msa0575850:three_prime_UTR | 25.0% |
| ! | ACTAAAAGAAATAGAGGTAA+AGG | - | chr4_1:79768739-79768758 | None:intergenic | 25.0% |
| GTGAAATTCAGAAATCATAC+TGG | + | chr4_1:79763326-79763345 | Msa0575850:CDS | 30.0% | |
| ! | TGATAATATGATGGTGCAAT+TGG | - | chr4_1:79763542-79763561 | None:intergenic | 30.0% |
| AAATAATTCTCAACATCCAC+GGG | - | chr4_1:79763604-79763623 | None:intergenic | 30.0% | |
| TAAGTGTGGAAGTTTGAAAA+CGG | - | chr4_1:79763813-79763832 | None:intergenic | 30.0% | |
| AAACTTCCACACTTATACTT+TGG | + | chr4_1:79763818-79763837 | Msa0575850:intron | 30.0% | |
| TTCTCTTTGCAATATCAACA+AGG | + | chr4_1:79763851-79763870 | Msa0575850:intron | 30.0% | |
| GATTAGACTATGAATTGGAT+TGG | - | chr4_1:79763896-79763915 | None:intergenic | 30.0% | |
| ! | ACATTGACAGGCAAATTTTA+TGG | - | chr4_1:79764002-79764021 | None:intergenic | 30.0% |
| TGAATACAAAAGCAAATGTC+TGG | - | chr4_1:79764076-79764095 | None:intergenic | 30.0% | |
| !! | ACTGATTTTCCTTCATATTC+TGG | - | chr4_1:79764146-79764165 | None:intergenic | 30.0% |
| GATGTATCTTTCAGATAATG+AGG | + | chr4_1:79764512-79764531 | Msa0575850:CDS | 30.0% | |
| ATGTATGATTGTATGAACTG+TGG | + | chr4_1:79764603-79764622 | Msa0575850:intron | 30.0% | |
| TTAAGTTACTAAGCAAAGCA+TGG | + | chr4_1:79764744-79764763 | Msa0575850:intron | 30.0% | |
| ATTATAAGTGTATAGTGTGG+CGG | - | chr4_1:79764996-79765015 | None:intergenic | 30.0% | |
| ATGATGAAATGGTTGAAAGA+TGG | + | chr4_1:79765121-79765140 | Msa0575850:CDS | 30.0% | |
| CAAACCTTTGTGTAAAATCT+GGG | - | chr4_1:79765229-79765248 | None:intergenic | 30.0% | |
| ACAAACCTTTGTGTAAAATC+TGG | - | chr4_1:79765230-79765249 | None:intergenic | 30.0% | |
| CATGTTTGAACCTAATTAAC+GGG | + | chr4_1:79765394-79765413 | Msa0575850:intron | 30.0% | |
| !!! | GGTTGCTTTTCCAAATTTTA+CGG | + | chr4_1:79765454-79765473 | Msa0575850:intron | 30.0% |
| ! | GTAAGGCAAATAATACCTTT+TGG | + | chr4_1:79765609-79765628 | Msa0575850:intron | 30.0% |
| !! | GCAAATAATACCTTTTGGTT+TGG | + | chr4_1:79765614-79765633 | Msa0575850:intron | 30.0% |
| ATCAAAGTTACCAAACCAAA+AGG | - | chr4_1:79765627-79765646 | None:intergenic | 30.0% | |
| TTAAATACCTGCATGAACAA+AGG | - | chr4_1:79765699-79765718 | None:intergenic | 30.0% | |
| !!! | TTTAATCCTGCTTTTTTACC+TGG | - | chr4_1:79765821-79765840 | None:intergenic | 30.0% |
| ACATGTATACATCAGTCAAT+TGG | - | chr4_1:79765877-79765896 | None:intergenic | 30.0% | |
| AGGTTAGATCACATAATGAT+AGG | + | chr4_1:79765941-79765960 | Msa0575850:CDS | 30.0% | |
| GGTTAGATCACATAATGATA+GGG | + | chr4_1:79765942-79765961 | Msa0575850:CDS | 30.0% | |
| GTTAGATCACATAATGATAG+GGG | + | chr4_1:79765943-79765962 | Msa0575850:CDS | 30.0% | |
| ! | TCTAGTAATTACAAGGTGTT+AGG | + | chr4_1:79766163-79766182 | Msa0575850:intron | 30.0% |
| ATTTCAAGATACGATCCAAA+TGG | - | chr4_1:79766824-79766843 | None:intergenic | 30.0% | |
| CTATATTAAGTGATAAGCAG+CGG | - | chr4_1:79766862-79766881 | None:intergenic | 30.0% | |
| ATGATATGTTGTTCTTAGAC+TGG | + | chr4_1:79766890-79766909 | Msa0575850:intron | 30.0% | |
| AAAAGAACTTAACCTTGATC+AGG | - | chr4_1:79766974-79766993 | None:intergenic | 30.0% | |
| CTTATGAGTTGCTTAATTCT+TGG | + | chr4_1:79767021-79767040 | Msa0575850:intron | 30.0% | |
| !! | AATTTTGATGTTGAGGTTGT+TGG | + | chr4_1:79767149-79767168 | Msa0575850:CDS | 30.0% |
| !!! | CTTCTCAGGATATGTTTTTT+TGG | - | chr4_1:79767264-79767283 | None:intergenic | 30.0% |
| CTTGCAAGCAAATTATCTAT+TGG | + | chr4_1:79767562-79767581 | Msa0575850:intron | 30.0% | |
| ! | AAATTATCTATTGGTCTCGT+TGG | + | chr4_1:79767571-79767590 | Msa0575850:intron | 30.0% |
| !! | TCAATCATTTTGTTGGCTAA+AGG | + | chr4_1:79767630-79767649 | Msa0575850:intron | 30.0% |
| !! | CAATCATTTTGTTGGCTAAA+GGG | + | chr4_1:79767631-79767650 | Msa0575850:intron | 30.0% |
| ! | TATTCAGCAAATTCTGAAGA+TGG | - | chr4_1:79767867-79767886 | None:intergenic | 30.0% |
| !! | AGAATTTGCTGAATACATCA+AGG | + | chr4_1:79767872-79767891 | Msa0575850:CDS | 30.0% |
| AAAGAGAGTAAGACAACAAA+CGG | - | chr4_1:79767941-79767960 | None:intergenic | 30.0% | |
| TAATGATTGTTCTCCTCATT+TGG | + | chr4_1:79768612-79768631 | Msa0575850:three_prime_UTR | 30.0% | |
| !!! | TACTAGTTGGTTTTTCAACA+AGG | - | chr4_1:79768682-79768701 | None:intergenic | 30.0% |
| TGTTGAAAAACCAACTAGTA+AGG | + | chr4_1:79768682-79768701 | Msa0575850:three_prime_UTR | 30.0% | |
| CAACTAGTAAGGATTTGAAT+CGG | + | chr4_1:79768693-79768712 | Msa0575850:three_prime_UTR | 30.0% | |
| AGAAATAGAGGTAAAGGAAA+GGG | - | chr4_1:79768733-79768752 | None:intergenic | 30.0% | |
| AAGAAATAGAGGTAAAGGAA+AGG | - | chr4_1:79768734-79768753 | None:intergenic | 30.0% | |
| ATTCGCATTTCATTCTTCCA+TGG | + | chr4_1:79763190-79763209 | Msa0575850:exon | 35.0% | |
| ! | GATTCGCATTTCAATTTTGC+AGG | + | chr4_1:79763283-79763302 | Msa0575850:intron | 35.0% |
| AAATGTGAAAGATGAGGAGA+CGG | - | chr4_1:79763438-79763457 | None:intergenic | 35.0% | |
| CAAATGAATCGGCTACTAAA+TGG | - | chr4_1:79763744-79763763 | None:intergenic | 35.0% | |
| ! | CATTTAGTAGCCGATTCATT+TGG | + | chr4_1:79763742-79763761 | Msa0575850:intron | 35.0% |
| AAGTGTGGAAGTTTGAAAAC+GGG | - | chr4_1:79763812-79763831 | None:intergenic | 35.0% | |
| !! | GAATTGGATTGGTGCATTAT+TGG | - | chr4_1:79763885-79763904 | None:intergenic | 35.0% |
| GGAAAATCAGTTATTGAGCT+TGG | + | chr4_1:79764155-79764174 | Msa0575850:CDS | 35.0% | |
| ! | CATTGAGAGTGCAATAAAGA+AGG | + | chr4_1:79764244-79764263 | Msa0575850:CDS | 35.0% |
| !! | CTGTAGAACGAAAGCATTAA+CGG | + | chr4_1:79764390-79764409 | Msa0575850:intron | 35.0% |
| TTGTATGAACTGTGGAGTAA+TGG | + | chr4_1:79764611-79764630 | Msa0575850:intron | 35.0% | |
| TATCTTCTATCAGTGCTTTG+TGG | + | chr4_1:79764699-79764718 | Msa0575850:intron | 35.0% | |
| TTTCCCAATGCTGTTAAACA+CGG | + | chr4_1:79764854-79764873 | Msa0575850:intron | 35.0% | |
| !!! | CTAACCTTTTGTTTTTCCCT+TGG | + | chr4_1:79765069-79765088 | Msa0575850:intron | 35.0% |
| ATGAAATGGTTGAAAGATGG+TGG | + | chr4_1:79765124-79765143 | Msa0575850:CDS | 35.0% | |
| ATTACAATCCTACTCACTAC+AGG | + | chr4_1:79765200-79765219 | Msa0575850:CDS | 35.0% | |
| TTACAATCCTACTCACTACA+GGG | + | chr4_1:79765201-79765220 | Msa0575850:CDS | 35.0% | |
| TTGTAGTTATCTCTATCCCT+TGG | + | chr4_1:79765253-79765272 | Msa0575850:intron | 35.0% | |
| ! | GCTTTTCCAAATTTTACGGT+TGG | + | chr4_1:79765458-79765477 | Msa0575850:intron | 35.0% |
| GAGAAACCAACCGTAAAATT+TGG | - | chr4_1:79765467-79765486 | None:intergenic | 35.0% | |
| AGTTAATGTTGAGCACTCAT+TGG | + | chr4_1:79765576-79765595 | Msa0575850:intron | 35.0% | |
| ! | GTTTGGTAACTTTGATCTGT+AGG | + | chr4_1:79765631-79765650 | Msa0575850:intron | 35.0% |
| ! | CAAATAATACCCTGTTGGTT+TGG | + | chr4_1:79765654-79765673 | Msa0575850:intron | 35.0% |
| TTGAAGTTACCAAACCAACA+GGG | - | chr4_1:79765666-79765685 | None:intergenic | 35.0% | |
| ATTGAAGTTACCAAACCAAC+AGG | - | chr4_1:79765667-79765686 | None:intergenic | 35.0% | |
| TCAAAACCAGGTAAAAAAGC+AGG | + | chr4_1:79765812-79765831 | Msa0575850:intron | 35.0% | |
| GCGGAGAAAGGAAAATATAA+AGG | - | chr4_1:79766072-79766091 | None:intergenic | 35.0% | |
| ! | TGTTAATTTGAAGCGGAGAA+AGG | - | chr4_1:79766084-79766103 | None:intergenic | 35.0% |
| TACCTGGTCTAGTAATTACA+AGG | + | chr4_1:79766156-79766175 | Msa0575850:intron | 35.0% | |
| !!! | ACTGCTGTGTTTTTAGGTAA+GGG | - | chr4_1:79766195-79766214 | None:intergenic | 35.0% |
| !! | CTTTTCATTCTTTGGTGACT+GGG | + | chr4_1:79766292-79766311 | Msa0575850:intron | 35.0% |
| !! | TTTTCATTCTTTGGTGACTG+GGG | + | chr4_1:79766293-79766312 | Msa0575850:intron | 35.0% |
| ATACTTCAATACTAGCAACC+AGG | - | chr4_1:79766476-79766495 | None:intergenic | 35.0% | |
| TCAAAGCTAGGCATTTCAAA+AGG | - | chr4_1:79766679-79766698 | None:intergenic | 35.0% | |
| CAACAATGAGTATCAAAGCT+AGG | - | chr4_1:79766691-79766710 | None:intergenic | 35.0% | |
| TGAATGTATGATGCCATACT+TGG | + | chr4_1:79766913-79766932 | Msa0575850:intron | 35.0% | |
| AGAATCTATCATCCTGATCA+AGG | + | chr4_1:79766959-79766978 | Msa0575850:intron | 35.0% | |
| !! | GGCTGAAAATTTTGATGTTG+AGG | + | chr4_1:79767142-79767161 | Msa0575850:CDS | 35.0% |
| ATTACATCATAGGTCTTCTC+AGG | - | chr4_1:79767278-79767297 | None:intergenic | 35.0% | |
| ACGAGTGTAGATTACATCAT+AGG | - | chr4_1:79767288-79767307 | None:intergenic | 35.0% | |
| CCTTACTTTGATGTATAGCA+TGG | - | chr4_1:79767315-79767334 | None:intergenic | 35.0% | |
| CCATGCTATACATCAAAGTA+AGG | + | chr4_1:79767312-79767331 | Msa0575850:intron | 35.0% | |
| GTAACTGTAAGCATGAATGA+AGG | + | chr4_1:79767402-79767421 | Msa0575850:intron | 35.0% | |
| ATTCCAAGCAATTGTTACAG+AGG | - | chr4_1:79767454-79767473 | None:intergenic | 35.0% | |
| TCACTTTCAACCTAGAGTTT+AGG | - | chr4_1:79767486-79767505 | None:intergenic | 35.0% | |
| ! | ACTCTAGGTTGAAAGTGATT+TGG | + | chr4_1:79767488-79767507 | Msa0575850:intron | 35.0% |
| CATTTGAGTAATAAGGTGGA+TGG | - | chr4_1:79767520-79767539 | None:intergenic | 35.0% | |
| CTCTCCATTAAGAAGAATTC+TGG | + | chr4_1:79767594-79767613 | Msa0575850:intron | 35.0% | |
| GAGTACATTGCAGAATACAA+AGG | - | chr4_1:79767740-79767759 | None:intergenic | 35.0% | |
| TTGTATTCTGCAATGTACTC+TGG | + | chr4_1:79767740-79767759 | Msa0575850:intron | 35.0% | |
| ! | TTTTACAAGTGGTTGAAACC+TGG | + | chr4_1:79767798-79767817 | Msa0575850:CDS | 35.0% |
| TTTGCTGAATACATCAAGGA+AGG | + | chr4_1:79767876-79767895 | Msa0575850:CDS | 35.0% | |
| AGTGTCAGCTGAAATCAAAT+GGG | - | chr4_1:79767966-79767985 | None:intergenic | 35.0% | |
| TAGTGTCAGCTGAAATCAAA+TGG | - | chr4_1:79767967-79767986 | None:intergenic | 35.0% | |
| TGGATTTGATGTCATTGTTG+AGG | + | chr4_1:79768055-79768074 | Msa0575850:CDS | 35.0% | |
| ! | ATCAGGTTTGTTTGATCCTT+TGG | + | chr4_1:79768087-79768106 | Msa0575850:intron | 35.0% |
| ATCAGTGATTTCAGCAATGT+GGG | + | chr4_1:79768244-79768263 | Msa0575850:intron | 35.0% | |
| GGATGACTACAATGAAATTG+TGG | + | chr4_1:79768353-79768372 | Msa0575850:intron | 35.0% | |
| ACAATGAAATTGTGGAGAGA+TGG | + | chr4_1:79768361-79768380 | Msa0575850:CDS | 35.0% | |
| TAGGAAAACTACTTTCACAC+TGG | - | chr4_1:79768501-79768520 | None:intergenic | 35.0% | |
| TCTTCTCAAAGATCCAAATG+AGG | - | chr4_1:79768628-79768647 | None:intergenic | 35.0% | |
| GGAGATGGAAAATAAGATGA+GGG | - | chr4_1:79768661-79768680 | None:intergenic | 35.0% | |
| AGGAGATGGAAAATAAGATG+AGG | - | chr4_1:79768662-79768681 | None:intergenic | 35.0% | |
| !! | TTGGTTTTTCAACAAGGAGA+TGG | - | chr4_1:79768676-79768695 | None:intergenic | 35.0% |
| CGATTCAAATCCTTACTAGT+TGG | - | chr4_1:79768695-79768714 | None:intergenic | 35.0% | |
| TTGAGAAACTCCTGGATCTA+CGG | - | chr4_1:79763119-79763138 | None:intergenic | 40.0% | |
| TGAGTGAGTGACATAATACC+TGG | - | chr4_1:79763221-79763240 | None:intergenic | 40.0% | |
| GGCTACTAAATGGTAGATGA+TGG | - | chr4_1:79763734-79763753 | None:intergenic | 40.0% | |
| AGTGTGGAAGTTTGAAAACG+GGG | - | chr4_1:79763811-79763830 | None:intergenic | 40.0% | |
| AGGAGTCCAAAGTATAAGTG+TGG | - | chr4_1:79763827-79763846 | None:intergenic | 40.0% | |
| ! | ACAAGTAAGAGCATGACATC+AGG | + | chr4_1:79763922-79763941 | Msa0575850:intron | 40.0% |
| AGGTACGTAATGACATTGAC+AGG | - | chr4_1:79764014-79764033 | None:intergenic | 40.0% | |
| TCCTTCATATTCTGGTAGCA+GGG | - | chr4_1:79764138-79764157 | None:intergenic | 40.0% | |
| TTCCTTCATATTCTGGTAGC+AGG | - | chr4_1:79764139-79764158 | None:intergenic | 40.0% | |
| TCCGGTAAATCTTCCAATAC+CGG | - | chr4_1:79764183-79764202 | None:intergenic | 40.0% | |
| TGGAAGATTTACCGGAGAAT+TGG | + | chr4_1:79764187-79764206 | Msa0575850:CDS | 40.0% | |
| GTTCTACAGAACGTTATGAG+TGG | - | chr4_1:79764379-79764398 | None:intergenic | 40.0% | |
| ! | AGAAACATCCATCTTTGGAG+AGG | - | chr4_1:79764454-79764473 | None:intergenic | 40.0% |
| CCTTCAGAAACATCCATCTT+TGG | - | chr4_1:79764459-79764478 | None:intergenic | 40.0% | |
| ! | CCAAAGATGGATGTTTCTGA+AGG | + | chr4_1:79764456-79764475 | Msa0575850:CDS | 40.0% |
| TTACTGTCAGTTGGAACCAT+GGG | - | chr4_1:79764637-79764656 | None:intergenic | 40.0% | |
| TTTACTGTCAGTTGGAACCA+TGG | - | chr4_1:79764638-79764657 | None:intergenic | 40.0% | |
| ! | ACAGCTTGTTTACTGTCAGT+TGG | - | chr4_1:79764646-79764665 | None:intergenic | 40.0% |
| TTCCCAATGCTGTTAAACAC+GGG | + | chr4_1:79764855-79764874 | Msa0575850:intron | 40.0% | |
| TACCCGTGTTTAACAGCATT+GGG | - | chr4_1:79764860-79764879 | None:intergenic | 40.0% | |
| AGCATATTGCGGAACAATAG+TGG | + | chr4_1:79764958-79764977 | Msa0575850:intron | 40.0% | |
| AGCACCAAGGGAAAAACAAA+AGG | - | chr4_1:79765076-79765095 | None:intergenic | 40.0% | |
| ATTGGTGGAAACAGGATTCT+CGG | - | chr4_1:79765162-79765181 | None:intergenic | 40.0% | |
| AATCCTGTTTCCACCAATCT+GGG | + | chr4_1:79765164-79765183 | Msa0575850:CDS | 40.0% | |
| TTCTCTTTGAATCCCCAGAT+TGG | - | chr4_1:79765180-79765199 | None:intergenic | 40.0% | |
| ! | GGAACCCAGATTTTACACAA+AGG | + | chr4_1:79765222-79765241 | Msa0575850:CDS | 40.0% |
| AATAATCTGGCAGAGACCAA+GGG | - | chr4_1:79765272-79765291 | None:intergenic | 40.0% | |
| ACAGAACACTCCCGTTAATT+AGG | - | chr4_1:79765407-79765426 | None:intergenic | 40.0% | |
| TGTTCTGTGATGGTAAAGGT+GGG | + | chr4_1:79765419-79765438 | Msa0575850:intron | 40.0% | |
| GTAGGCAAATAATACCCTGT+TGG | + | chr4_1:79765649-79765668 | Msa0575850:intron | 40.0% | |
| TGCATGAACAAAGGAGAAGA+CGG | - | chr4_1:79765690-79765709 | None:intergenic | 40.0% | |
| TGCCATATGAGTGATATCTC+TGG | + | chr4_1:79765723-79765742 | Msa0575850:CDS | 40.0% | |
| GCCATATGAGTGATATCTCT+GGG | + | chr4_1:79765724-79765743 | Msa0575850:CDS | 40.0% | |
| TCCCAGAGATATCACTCATA+TGG | - | chr4_1:79765728-79765747 | None:intergenic | 40.0% | |
| TTCCTTTGAGCTTTCTCTTG+TGG | + | chr4_1:79765749-79765768 | Msa0575850:CDS | 40.0% | |
| TCCTTTGAGCTTTCTCTTGT+GGG | + | chr4_1:79765750-79765769 | Msa0575850:CDS | 40.0% | |
| ! | TTTTCATGGTGCAGATTTGC+TGG | + | chr4_1:79765908-79765927 | Msa0575850:intron | 40.0% |
| !! | GATTTGCTGGATATGGCAAA+AGG | + | chr4_1:79765921-79765940 | Msa0575850:intron | 40.0% |
| CAACTCTATCCAAGAACTTC+TGG | - | chr4_1:79765972-79765991 | None:intergenic | 40.0% | |
| ! | TTTATTAGCACTGGAGGACT+TGG | + | chr4_1:79766042-79766061 | Msa0575850:CDS | 40.0% |
| ! | ATGTTCCGTTGTCATTTACC+TGG | + | chr4_1:79766140-79766159 | Msa0575850:intron | 40.0% |
| CTAGACCAGGTAAATGACAA+CGG | - | chr4_1:79766148-79766167 | None:intergenic | 40.0% | |
| CACCTTGTAATTACTAGACC+AGG | - | chr4_1:79766161-79766180 | None:intergenic | 40.0% | |
| !!! | GACTGCTGTGTTTTTAGGTA+AGG | - | chr4_1:79766196-79766215 | None:intergenic | 40.0% |
| ACGTGTGCACAAGAAATAGT+TGG | + | chr4_1:79766255-79766274 | Msa0575850:intron | 40.0% | |
| CCAGTCACCAAAGAATGAAA+AGG | - | chr4_1:79766294-79766313 | None:intergenic | 40.0% | |
| !! | CCTTTTCATTCTTTGGTGAC+TGG | + | chr4_1:79766291-79766310 | Msa0575850:intron | 40.0% |
| AAAGGAACTTGTAGCTAAGC+TGG | + | chr4_1:79767055-79767074 | Msa0575850:CDS | 40.0% | |
| AACCAACATCCAGTACTTTC+TGG | - | chr4_1:79767094-79767113 | None:intergenic | 40.0% | |
| !! | AAAGTACTGGATGTTGGTTG+TGG | + | chr4_1:79767095-79767114 | Msa0575850:CDS | 40.0% |
| GGGAAATCACATTTATGGAG+AGG | - | chr4_1:79767181-79767200 | None:intergenic | 40.0% | |
| AGCACGGGAAATCACATTTA+TGG | - | chr4_1:79767186-79767205 | None:intergenic | 40.0% | |
| CTTACAGTTACATACACCTG+GGG | - | chr4_1:79767393-79767412 | None:intergenic | 40.0% | |
| GCTTACAGTTACATACACCT+GGG | - | chr4_1:79767394-79767413 | None:intergenic | 40.0% | |
| TGCTTACAGTTACATACACC+TGG | - | chr4_1:79767395-79767414 | None:intergenic | 40.0% | |
| CAAGCAATTGTTACAGAGGA+AGG | - | chr4_1:79767450-79767469 | None:intergenic | 40.0% | |
| CTTCCTCTGTAACAATTGCT+TGG | + | chr4_1:79767448-79767467 | Msa0575850:intron | 40.0% | |
| TGCAAGTGTAAGAACCGAAA+AGG | - | chr4_1:79767548-79767567 | None:intergenic | 40.0% | |
| CATTGCAGAATACAAAGGTC+AGG | - | chr4_1:79767735-79767754 | None:intergenic | 40.0% | |
| !! | ATGTACTCTGGATTTGTTGC+AGG | + | chr4_1:79767752-79767771 | Msa0575850:intron | 40.0% |
| GTAATTAGAAGTTGACCTCC+AGG | - | chr4_1:79767819-79767838 | None:intergenic | 40.0% | |
| ! | ACTGATTACTGCAAAAGTGC+TGG | + | chr4_1:79767837-79767856 | Msa0575850:CDS | 40.0% |
| GCTCGTATTCTTTCATGTCA+TGG | - | chr4_1:79767914-79767933 | None:intergenic | 40.0% | |
| !! | ATCCTTTGGTCTAGTTTGCT+TGG | + | chr4_1:79768101-79768120 | Msa0575850:intron | 40.0% |
| TACCAAGCAAACTAGACCAA+AGG | - | chr4_1:79768106-79768125 | None:intergenic | 40.0% | |
| CATCAGTGATTTCAGCAATG+TGG | + | chr4_1:79768243-79768262 | Msa0575850:intron | 40.0% | |
| TGAAATTGTGGAGAGATGGA+AGG | + | chr4_1:79768365-79768384 | Msa0575850:CDS | 40.0% | |
| ATAATAGCAAGAACTGCAGC+AGG | - | chr4_1:79768472-79768491 | None:intergenic | 40.0% | |
| GATCGATTAATGCAGCAGAG+AGG | + | chr4_1:79763081-79763100 | Msa0575850:five_prime_UTR | 45.0% | |
| GTAGATCCAGGAGTTTCTCA+AGG | + | chr4_1:79763118-79763137 | Msa0575850:five_prime_UTR | 45.0% | |
| ATTAAGTGCCTTCGATAGCG+AGG | - | chr4_1:79763149-79763168 | None:intergenic | 45.0% | |
| CATAATACCTGGTGAAGCCA+TGG | - | chr4_1:79763210-79763229 | None:intergenic | 45.0% | |
| CTTGTCGAGATCAGAAGCTT+TGG | - | chr4_1:79763398-79763417 | None:intergenic | 45.0% | |
| CAAAGCTTCTGATCTCGACA+AGG | + | chr4_1:79763396-79763415 | Msa0575850:CDS | 45.0% | |
| TCCCTGCTACCAGAATATGA+AGG | + | chr4_1:79764134-79764153 | Msa0575850:CDS | 45.0% | |
| TCAGTTATTGAGCTTGGAGC+CGG | + | chr4_1:79764161-79764180 | Msa0575850:CDS | 45.0% | |
| ! | GCCGGTATTGGAAGATTTAC+CGG | + | chr4_1:79764179-79764198 | Msa0575850:CDS | 45.0% |
| GACATCAGCGCACAAAAACT+TGG | - | chr4_1:79764430-79764449 | None:intergenic | 45.0% | |
| TGATGTCACCTCTCCAAAGA+TGG | + | chr4_1:79764443-79764462 | Msa0575850:CDS | 45.0% | |
| ! | CAGCATTGGGAAATACTACG+CGG | - | chr4_1:79764847-79764866 | None:intergenic | 45.0% |
| CTACCCGTGTTTAACAGCAT+TGG | - | chr4_1:79764861-79764880 | None:intergenic | 45.0% | |
| ACTATAGCACTGTCGTGTAG+TGG | - | chr4_1:79764899-79764918 | None:intergenic | 45.0% | |
| ! | GTGTATAGTGTGGCGGAATT+TGG | - | chr4_1:79764989-79765008 | None:intergenic | 45.0% |
| !!! | TGTTTTTCCCTTGGTGCTTC+AGG | + | chr4_1:79765078-79765097 | Msa0575850:intron | 45.0% |
| ! | TTCTCAACCTGAAGCACCAA+GGG | - | chr4_1:79765088-79765107 | None:intergenic | 45.0% |
| ! | ATTCTCAACCTGAAGCACCA+AGG | - | chr4_1:79765089-79765108 | None:intergenic | 45.0% |
| GAATCCTGTTTCCACCAATC+TGG | + | chr4_1:79765163-79765182 | Msa0575850:CDS | 45.0% | |
| ATCCTGTTTCCACCAATCTG+GGG | + | chr4_1:79765165-79765184 | Msa0575850:CDS | 45.0% | |
| TCTTTGAATCCCCAGATTGG+TGG | - | chr4_1:79765177-79765196 | None:intergenic | 45.0% | |
| CAATAATCTGGCAGAGACCA+AGG | - | chr4_1:79765273-79765292 | None:intergenic | 45.0% | |
| !! | TTAACGGGAGTGTTCTGTGA+TGG | + | chr4_1:79765409-79765428 | Msa0575850:intron | 45.0% |
| ! | GGAGTGTTCTGTGATGGTAA+AGG | + | chr4_1:79765415-79765434 | Msa0575850:intron | 45.0% |
| GTGTTCTGTGATGGTAAAGG+TGG | + | chr4_1:79765418-79765437 | Msa0575850:intron | 45.0% | |
| !! | TGATGGTAAAGGTGGGCTAT+AGG | + | chr4_1:79765426-79765445 | Msa0575850:intron | 45.0% |
| !! | TAAAGGTGGGCTATAGGTCA+TGG | + | chr4_1:79765432-79765451 | Msa0575850:intron | 45.0% |
| !! | AAAGGTGGGCTATAGGTCAT+GGG | + | chr4_1:79765433-79765452 | Msa0575850:intron | 45.0% |
| GTCTTCTCCTTTGTTCATGC+AGG | + | chr4_1:79765689-79765708 | Msa0575850:intron | 45.0% | |
| ! | CTTGTGGGCTGTAAATGCAT+TGG | + | chr4_1:79765765-79765784 | Msa0575850:CDS | 45.0% |
| !! | TGGTGCAGATTTGCTGGATA+TGG | + | chr4_1:79765914-79765933 | Msa0575850:intron | 45.0% |
| TAGGGGATTCCAGAAGTTCT+TGG | + | chr4_1:79765960-79765979 | Msa0575850:CDS | 45.0% | |
| TTACGATATGAGCGCGTGTA+TGG | + | chr4_1:79766012-79766031 | Msa0575850:CDS | 45.0% | |
| CTCCAGTGCTAATAAAGCCT+TGG | - | chr4_1:79766038-79766057 | None:intergenic | 45.0% | |
| !! | CAAGGCTTTATTAGCACTGG+AGG | + | chr4_1:79766036-79766055 | Msa0575850:CDS | 45.0% |
| GATAAGCAGCGGTGAATCTT+TGG | - | chr4_1:79766851-79766870 | None:intergenic | 45.0% | |
| TTCTTGGGCAGAAACGACAA+AGG | + | chr4_1:79767037-79767056 | Msa0575850:intron | 45.0% | |
| GATAGCACGTTCAATAGCAC+GGG | - | chr4_1:79767201-79767220 | None:intergenic | 45.0% | |
| CGATAGCACGTTCAATAGCA+CGG | - | chr4_1:79767202-79767221 | None:intergenic | 45.0% | |
| ! | CGTGCTATTGAACGTGCTAT+CGG | + | chr4_1:79767200-79767219 | Msa0575850:CDS | 45.0% |
| !! | AGCTTTATCCTTTTAGCCCC+AGG | + | chr4_1:79767374-79767393 | Msa0575850:intron | 45.0% |
| TACATACACCTGGGGCTAAA+AGG | - | chr4_1:79767385-79767404 | None:intergenic | 45.0% | |
| ! | GGTTGAAAGTGATTTGGCAG+TGG | + | chr4_1:79767494-79767513 | Msa0575850:intron | 45.0% |
| TACAAGTGGTTGAAACCTGG+AGG | + | chr4_1:79767801-79767820 | Msa0575850:CDS | 45.0% | |
| GCTGAATACATCAAGGAAGG+AGG | + | chr4_1:79767879-79767898 | Msa0575850:CDS | 45.0% | |
| TCTAAATCTGCTGCAGATGC+TGG | + | chr4_1:79768025-79768044 | Msa0575850:intron | 45.0% | |
| TGTTGAGGATCGAACTGATC+AGG | + | chr4_1:79768070-79768089 | Msa0575850:CDS | 45.0% | |
| GTTTGTGAAAACACTGCAGC+AGG | + | chr4_1:79768186-79768205 | Msa0575850:intron | 45.0% | |
| !!! | TTTTTTTTTTTTATATACAT+AGG | + | chr4_1:79764106-79764125 | Msa0575850:intron | 5.0% |
| TTGTGTGGTGTGGTGTGAAG+AGG | + | chr4_1:79763031-79763050 | Msa0575850:five_prime_UTR | 50.0% | |
| GAGCTTCTAACCGTAGATCC+AGG | + | chr4_1:79763106-79763125 | Msa0575850:five_prime_UTR | 50.0% | |
| CATTCTTCCATGGCTTCACC+AGG | + | chr4_1:79763200-79763219 | Msa0575850:exon | 50.0% | |
| ! | TTGTGCTGATCTCTCTGTCG+AGG | + | chr4_1:79763357-79763376 | Msa0575850:CDS | 50.0% |
| CGACAAGGAAGAAAGACCTG+AGG | + | chr4_1:79763411-79763430 | Msa0575850:CDS | 50.0% | |
| ATCCACGGGTGAACTGAAGA+GGG | - | chr4_1:79763590-79763609 | None:intergenic | 50.0% | |
| ATTGAGCTTGGAGCCGGTAT+TGG | + | chr4_1:79764167-79764186 | Msa0575850:CDS | 50.0% | |
| AGCTTTCAGCGCCAATTCTC+CGG | - | chr4_1:79764201-79764220 | None:intergenic | 50.0% | |
| GCTGAAAGCTGGTCAATTGC+TGG | + | chr4_1:79764211-79764230 | Msa0575850:CDS | 50.0% | |
| AACTGTGGAGTAATGGCCCA+TGG | + | chr4_1:79764618-79764637 | Msa0575850:intron | 50.0% | |
| ATCCCCAGATTGGTGGAAAC+AGG | - | chr4_1:79765170-79765189 | None:intergenic | 50.0% | |
| GCCCACAAGAGAAAGCTCAA+AGG | - | chr4_1:79765754-79765773 | None:intergenic | 50.0% | |
| !! | GGCCAAGGCTTTATTAGCAC+TGG | + | chr4_1:79766033-79766052 | Msa0575850:CDS | 50.0% |
| ! | GCTGCGACTGCTGTGTTTTT+AGG | - | chr4_1:79766201-79766220 | None:intergenic | 50.0% |
| GCTAAGCTGGAACTAAAGCC+TGG | + | chr4_1:79767068-79767087 | Msa0575850:CDS | 50.0% | |
| ! | AAAGCCTGGCCAGAAAGTAC+TGG | + | chr4_1:79767082-79767101 | Msa0575850:CDS | 50.0% |
| ! | ACATCCAGTACTTTCTGGCC+AGG | - | chr4_1:79767089-79767108 | None:intergenic | 50.0% |
| !! | GGCCAGAAAGTACTGGATGT+TGG | + | chr4_1:79767089-79767108 | Msa0575850:CDS | 50.0% |
| ! | CTGGATGTTGGTTGTGGTGT+TGG | + | chr4_1:79767101-79767120 | Msa0575850:CDS | 50.0% |
| ! | GATGTTGGTTGTGGTGTTGG+CGG | + | chr4_1:79767104-79767123 | Msa0575850:CDS | 50.0% |
| TGGCGGAGGTGATTTCTACA+TGG | + | chr4_1:79767121-79767140 | Msa0575850:CDS | 50.0% | |
| AATTGCTCTCGAGAGCCAGA+AGG | + | chr4_1:79768213-79768232 | Msa0575850:CDS | 50.0% | |
| CACTGATGAAGTCGTCCTTC+TGG | - | chr4_1:79768231-79768250 | None:intergenic | 50.0% | |
| ATGGAAGGCGAAGCAGATCA+GGG | + | chr4_1:79768380-79768399 | Msa0575850:CDS | 50.0% | |
| GTGGTGTGGTGTGAAGAGGT+AGG | + | chr4_1:79763035-79763054 | Msa0575850:five_prime_UTR | 55.0% | |
| GTGGTGTGAAGAGGTAGGCA+AGG | + | chr4_1:79763040-79763059 | Msa0575850:five_prime_UTR | 55.0% | |
| GCGAGACCTTGAGAAACTCC+TGG | - | chr4_1:79763127-79763146 | None:intergenic | 55.0% | |
| AAGATGAGGAGACGGACCTC+AGG | - | chr4_1:79763430-79763449 | None:intergenic | 55.0% | |
| CATCCACGGGTGAACTGAAG+AGG | - | chr4_1:79763591-79763610 | None:intergenic | 55.0% | |
| ! | GGAGAATTGGCGCTGAAAGC+TGG | + | chr4_1:79764200-79764219 | Msa0575850:CDS | 55.0% |
| ! | AGCTGGTCAATTGCTGGCTG+TGG | + | chr4_1:79764217-79764236 | Msa0575850:CDS | 55.0% |
| CTGGGTTCCCTGTAGTGAGT+AGG | - | chr4_1:79765211-79765230 | None:intergenic | 55.0% | |
| TATGAGCGCGTGTATGGCCA+AGG | + | chr4_1:79766018-79766037 | Msa0575850:CDS | 55.0% | |
| ! | TCAGCGAGAAGCGTGTGATC+AGG | + | chr4_1:79766624-79766643 | Msa0575850:intron | 55.0% |
| CTGCAGATGCTGGAGAATGC+TGG | + | chr4_1:79768035-79768054 | Msa0575850:intron | 55.0% | |
| GATGGAAGGCGAAGCAGATC+AGG | + | chr4_1:79768379-79768398 | Msa0575850:CDS | 55.0% | |
| TGGAAGGCGAAGCAGATCAG+GGG | + | chr4_1:79768381-79768400 | Msa0575850:CDS | 55.0% | |
| AAGCAGATCAGGGGTGAACG+AGG | + | chr4_1:79768390-79768409 | Msa0575850:CDS | 55.0% | |
| AGCAGATCAGGGGTGAACGA+GGG | + | chr4_1:79768391-79768410 | Msa0575850:CDS | 55.0% | |
| TGAACGAGGGGAGCAGAAGT+GGG | + | chr4_1:79768404-79768423 | Msa0575850:CDS | 55.0% | |
| AGGTCTCGCCTCGCTATCGA+AGG | + | chr4_1:79763138-79763157 | Msa0575850:five_prime_UTR | 60.0% | |
| CTCCCTCTTCAGTTCACCCG+TGG | + | chr4_1:79763585-79763604 | Msa0575850:intron | 60.0% | |
| !! | GTTGGTTGTGGTGTTGGCGG+AGG | + | chr4_1:79767107-79767126 | Msa0575850:CDS | 60.0% |
| GCAGATCAGGGGTGAACGAG+GGG | + | chr4_1:79768392-79768411 | Msa0575850:CDS | 60.0% | |
| GTGAACGAGGGGAGCAGAAG+TGG | + | chr4_1:79768403-79768422 | Msa0575850:CDS | 60.0% | |
| GAACGAGGGGAGCAGAAGTG+GGG | + | chr4_1:79768405-79768424 | Msa0575850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79763025 | 79768799 | 79763025 | ID=Msa0575850;Name=Msa0575850 |
| chr4_1 | mRNA | 79763025 | 79768799 | 79763025 | ID=Msa0575850-mRNA-1;Parent=Msa0575850;Name=Msa0575850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=184|1|1|1|1|1|12|347|493 |
| chr4_1 | exon | 79763025 | 79763221 | 79763025 | ID=Msa0575850-mRNA-1:exon:28468;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79763305 | 79763432 | 79763305 | ID=Msa0575850-mRNA-1:exon:28469;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79764128 | 79764265 | 79764128 | ID=Msa0575850-mRNA-1:exon:28470;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79764396 | 79764533 | 79764396 | ID=Msa0575850-mRNA-1:exon:28471;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79765100 | 79765243 | 79765100 | ID=Msa0575850-mRNA-1:exon:28472;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79765711 | 79765821 | 79765711 | ID=Msa0575850-mRNA-1:exon:28473;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79765922 | 79766063 | 79765922 | ID=Msa0575850-mRNA-1:exon:28474;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79767048 | 79767328 | 79767048 | ID=Msa0575850-mRNA-1:exon:28475;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79767774 | 79767935 | 79767774 | ID=Msa0575850-mRNA-1:exon:28476;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79768041 | 79768091 | 79768041 | ID=Msa0575850-mRNA-1:exon:28477;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79768187 | 79768261 | 79768187 | ID=Msa0575850-mRNA-1:exon:28478;Parent=Msa0575850-mRNA-1 |
| chr4_1 | exon | 79768354 | 79768799 | 79768354 | ID=Msa0575850-mRNA-1:exon:28479;Parent=Msa0575850-mRNA-1 |
| chr4_1 | five_prime_UTR | 79763025 | 79763208 | 79763025 | ID=Msa0575850-mRNA-1:five_prime_utr;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79763209 | 79763221 | 79763209 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79763305 | 79763432 | 79763305 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79764128 | 79764265 | 79764128 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79764396 | 79764533 | 79764396 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79765100 | 79765243 | 79765100 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79765711 | 79765821 | 79765711 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79765922 | 79766063 | 79765922 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79767048 | 79767328 | 79767048 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79767774 | 79767935 | 79767774 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79768041 | 79768091 | 79768041 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79768187 | 79768261 | 79768187 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | CDS | 79768354 | 79768452 | 79768354 | ID=Msa0575850-mRNA-1:cds;Parent=Msa0575850-mRNA-1 |
| chr4_1 | three_prime_UTR | 79768453 | 79768799 | 79768453 | ID=Msa0575850-mRNA-1:three_prime_utr;Parent=Msa0575850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
