AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0884450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0884450 MtrunA17_Chr6g0464861 98.745 239 3 0 4 242 218 456 3.85e-172 482
Msa0884450 MtrunA17_Chr6g0464841 92.887 239 17 0 4 242 219 457 3.09e-164 462
Msa0884450 MtrunA17_Chr6g0464871 86.975 238 31 0 4 241 231 468 6.15e-148 421
Msa0884450 MtrunA17_Chr6g0464881 68.220 236 75 0 4 239 219 454 3.27e-122 355
Msa0884450 MtrunA17_Chr6g0464921 68.333 240 75 1 4 242 219 458 5.12e-117 342
Msa0884450 MtrunA17_Chr7g0249961 65.417 240 81 2 1 239 21 259 4.11e-112 323
Msa0884450 MtrunA17_Chr7g0249981 67.089 237 76 2 4 239 231 466 6.76e-111 327
Msa0884450 MtrunA17_Chr7g0250001 60.000 235 92 2 6 239 214 447 2.25e-101 302
Msa0884450 MtrunA17_Chr7g0249931 55.833 240 102 3 4 241 248 485 1.34e-92 280
Msa0884450 MtrunA17_Chr5g0414331 55.230 239 106 1 4 241 217 455 8.12e-90 273
Msa0884450 MtrunA17_Chr5g0414321 54.852 237 106 1 4 239 215 451 1.58e-89 272
Msa0884450 MtrunA17_Chr8g0380531 49.793 241 117 2 4 241 220 459 7.54e-76 236
Msa0884450 MtrunA17_Chr1g0207981 46.639 238 119 4 4 236 235 469 6.44e-71 224
Msa0884450 MtrunA17_Chr8g0377921 47.679 237 114 6 9 236 225 460 8.23e-65 208
Msa0884450 MtrunA17_Chr3g0121991 44.715 246 118 6 9 240 305 546 6.11e-64 208
Msa0884450 MtrunA17_Chr8g0377941 50.224 223 96 5 17 236 248 458 1.61e-63 205
Msa0884450 MtrunA17_Chr3g0122001 44.813 241 117 5 9 236 712 949 3.52e-60 204
Msa0884450 MtrunA17_Chr3g0122001 43.802 242 119 6 9 236 232 470 2.14e-57 196
Msa0884450 MtrunA17_Chr1g0207931 47.059 204 97 4 49 242 298 500 5.01e-59 194
Msa0884450 MtrunA17_Chr1g0207971 46.561 189 98 2 49 236 264 450 4.45e-58 191
Msa0884450 MtrunA17_Chr3g0098111 46.970 198 94 4 49 236 270 466 1.33e-56 187
Msa0884450 MtrunA17_Chr1g0207951 45.503 189 99 2 49 236 382 567 4.22e-56 192
Msa0884450 MtrunA17_Chr1g0207951 47.208 197 97 4 49 241 917 1110 6.49e-55 189
Msa0884450 MtrunA17_Chr4g0053501 42.276 246 124 5 5 239 226 464 7.97e-56 186
Msa0884450 MtrunA17_Chr5g0401721 40.948 232 126 4 13 236 239 467 4.99e-55 183
Msa0884450 MtrunA17_Chr4g0053321 40.244 246 129 5 5 239 241 479 6.63e-53 178
Msa0884450 MtrunA17_Chr1g0207861 47.980 198 92 4 49 236 269 465 3.01e-52 176
Msa0884450 MtrunA17_Chr8g0365811 40.496 242 122 6 9 236 721 954 3.77e-52 181
Msa0884450 MtrunA17_Chr8g0365811 44.554 202 97 5 49 236 272 472 7.98e-48 169
Msa0884450 MtrunA17_Chr1g0161351 47.475 198 93 4 49 236 298 494 1.46e-50 172
Msa0884450 MtrunA17_Chr1g0207831 38.865 229 129 5 13 236 238 460 2.24e-50 171
Msa0884450 MtrunA17_Chr7g0218811 41.579 190 106 2 49 236 260 446 1.73e-46 160
Msa0884450 MtrunA17_Chr8g0382021 38.318 214 114 4 46 241 277 490 2.77e-46 160
Msa0884450 MtrunA17_Chr1g0159551 36.250 240 128 6 17 241 232 461 3.06e-46 159
Msa0884450 MtrunA17_Chr2g0278711 41.624 197 105 4 48 237 281 474 5.74e-46 159
Msa0884450 MtrunA17_Chr6g0462551 40.444 225 112 6 13 228 242 453 5.02e-45 157
Msa0884450 MtrunA17_Chr3g0118721 35.950 242 125 6 8 236 62 286 5.17e-45 152
Msa0884450 MtrunA17_Chr6g0486251 40.865 208 105 4 41 230 248 455 9.24e-44 153
Msa0884450 MtrunA17_Chr6g0486201 40.865 208 105 4 41 230 248 455 9.24e-44 153
Msa0884450 MtrunA17_Chr1g0173121 36.493 211 119 4 46 241 254 464 9.57e-44 153
Msa0884450 MtrunA17_Chr4g0044511 37.500 208 114 4 48 239 297 504 1.02e-43 154
Msa0884450 MtrunA17_Chr6g0462541 42.105 190 101 3 48 228 263 452 2.08e-43 152
Msa0884450 MtrunA17_Chr4g0014061 40.952 210 106 5 48 239 263 472 2.63e-43 152
Msa0884450 MtrunA17_Chr3g0118771 35.246 244 134 5 8 241 261 490 3.03e-43 152
Msa0884450 MtrunA17_Chr7g0232391 37.681 207 112 3 48 237 257 463 3.53e-43 152
Msa0884450 MtrunA17_Chr7g0243871 40.191 209 107 4 49 239 264 472 3.61e-43 152
Msa0884450 MtrunA17_Chr3g0118711 36.709 237 130 6 8 236 253 477 5.01e-43 151
Msa0884450 MtrunA17_Chr7g0218831 38.660 194 110 3 48 237 249 437 5.01e-43 150
Msa0884450 MtrunA17_Chr6g0454301 36.667 240 139 7 4 236 494 727 8.35e-43 154
Msa0884450 MtrunA17_Chr6g0454301 32.456 228 143 5 14 236 5 226 6.89e-34 129
Msa0884450 MtrunA17_Chr8g0339451 38.813 219 113 3 44 241 247 465 8.76e-43 150
Msa0884450 MtrunA17_Chr5g0393591 40.306 196 93 3 48 236 254 432 1.95e-42 149
Msa0884450 MtrunA17_Chr8g0339461 40.376 213 106 3 44 235 255 467 2.19e-42 149
Msa0884450 MtrunA17_Chr8g0347281 39.614 207 104 4 46 232 260 465 2.68e-42 149
Msa0884450 MtrunA17_Chr8g0336691 36.777 242 122 5 13 235 1146 1375 2.74e-42 153
Msa0884450 MtrunA17_Chr8g0336691 37.500 216 116 3 39 235 254 469 4.11e-39 144
Msa0884450 MtrunA17_Chr8g0336691 39.487 195 105 3 42 234 724 907 7.10e-37 137
Msa0884450 MtrunA17_Chr3g0092641 37.826 230 130 6 13 236 252 474 3.01e-42 149
Msa0884450 MtrunA17_Chr5g0426431 38.696 230 128 6 13 236 252 474 3.25e-42 149
Msa0884450 MtrunA17_Chr7g0232311 38.356 219 116 3 38 237 243 461 4.13e-42 149
Msa0884450 MtrunA17_Chr8g0335141 40.476 210 107 5 48 239 259 468 4.16e-42 149
Msa0884450 MtrunA17_Chr3g0118671 36.017 236 135 5 8 237 246 471 6.10e-42 148
Msa0884450 MtrunA17_Chr3g0079731 38.498 213 104 5 48 236 268 477 1.36e-41 147
Msa0884450 MtrunA17_Chr8g0335161 39.524 210 109 4 48 239 257 466 1.62e-41 147
Msa0884450 MtrunA17_Chr7g0218841 38.660 194 110 3 48 237 250 438 1.82e-41 146
Msa0884450 MtrunA17_Chr8g0339601 38.009 221 115 4 37 235 106 326 1.89e-41 144
Msa0884450 MtrunA17_Chr8g0347271 39.024 205 104 4 48 232 263 466 1.98e-41 147
Msa0884450 MtrunA17_Chr8g0336731 38.208 212 114 3 42 236 276 487 2.05e-41 147
Msa0884450 MtrunA17_Chr7g0232411 36.715 207 114 3 48 237 257 463 2.38e-41 147
Msa0884450 MtrunA17_Chr4g0066151 35.745 235 126 7 22 232 239 472 2.61e-41 147
Msa0884450 MtrunA17_Chr6g0454401 34.940 249 144 7 4 242 245 485 2.76e-41 147
Msa0884450 MtrunA17_Chr7g0217881 34.855 241 141 6 4 236 226 458 2.86e-41 146
Msa0884450 MtrunA17_Chr5g0426401 38.318 214 120 5 13 221 85 291 3.87e-41 143
Msa0884450 MtrunA17_Chr6g0454141 34.818 247 133 6 4 236 244 476 4.07e-41 146
Msa0884450 MtrunA17_Chr7g0218821 37.696 191 114 2 48 236 260 447 4.08e-41 145
Msa0884450 MtrunA17_Chr6g0462571 40.000 190 105 3 48 228 261 450 4.95e-41 146
Msa0884450 MtrunA17_Chr6g0459311 39.423 208 108 4 41 230 255 462 5.04e-41 146
Msa0884450 MtrunA17_Chr4g0060511 38.756 209 110 4 49 239 279 487 5.29e-41 146
Msa0884450 MtrunA17_Chr6g0462531 41.053 190 103 4 48 228 264 453 6.20e-41 145
Msa0884450 MtrunA17_Chr8g0336651 38.863 211 112 3 42 235 250 460 6.28e-41 149
Msa0884450 MtrunA17_Chr8g0336651 39.252 214 109 4 42 234 1025 1238 1.22e-39 145
Msa0884450 MtrunA17_Chr8g0336651 38.660 194 106 2 42 235 590 770 1.60e-36 136
Msa0884450 MtrunA17_Chr6g0463861 34.426 244 135 7 22 241 233 475 6.49e-41 146
Msa0884450 MtrunA17_Chr6g0462521 42.105 190 101 4 48 228 250 439 6.70e-41 145
Msa0884450 MtrunA17_Chr7g0243801 38.496 226 120 5 32 239 252 476 7.82e-41 145
Msa0884450 MtrunA17_Chr8g0336741 38.389 211 113 3 42 235 257 467 8.17e-41 145
Msa0884450 MtrunA17_Chr7g0243781 39.336 211 108 4 49 239 265 475 8.77e-41 145
Msa0884450 MtrunA17_Chr1g0153461 36.893 206 112 3 48 235 3 208 1.32e-40 139
Msa0884450 MtrunA17_Chr5g0412111 37.288 236 125 7 14 239 239 461 1.43e-40 144
Msa0884450 MtrunA17_Chr7g0275511 38.991 218 113 5 34 232 252 468 1.59e-40 145
Msa0884450 MtrunA17_Chr7g0218791 39.896 193 108 3 46 236 255 441 1.60e-40 144
Msa0884450 MtrunA17_Chr4g0066221 36.719 256 131 8 10 241 234 482 1.67e-40 145
Msa0884450 MtrunA17_Chr7g0243771 38.938 226 119 5 32 239 251 475 1.69e-40 145
Msa0884450 MtrunA17_Chr7g0232401 38.318 214 113 4 40 235 251 463 1.90e-40 144
Msa0884450 MtrunA17_Chr5g0432731 34.061 229 138 6 13 237 75 294 2.02e-40 140
Msa0884450 MtrunA17_Chr3g0106251 36.481 233 132 6 13 241 75 295 3.00e-40 140
Msa0884450 MtrunA17_Chr6g0454221 35.371 229 136 6 14 236 5 227 3.58e-40 140
Msa0884450 MtrunA17_Chr8g0373301 37.981 208 113 3 44 235 255 462 3.64e-40 144
Msa0884450 MtrunA17_Chr8g0339441 38.278 209 108 3 48 235 217 425 3.86e-40 143
Msa0884450 MtrunA17_Chr7g0232331 36.667 210 115 4 48 239 257 466 5.48e-40 143
Msa0884450 MtrunA17_Chr4g0066261 35.897 234 126 6 22 232 242 474 6.53e-40 143
Msa0884450 MtrunA17_Chr8g0361371 38.498 213 107 5 48 236 255 467 6.56e-40 143
Msa0884450 MtrunA17_Chr3g0118701 35.443 237 133 6 8 236 255 479 6.95e-40 143
Msa0884450 MtrunA17_Chr4g0066131 33.468 248 132 7 22 241 234 476 6.99e-40 143
Msa0884450 MtrunA17_Chr3g0112761 40.488 205 110 5 43 239 249 449 9.56e-40 142
Msa0884450 MtrunA17_Chr4g0066201 34.263 251 140 6 15 241 227 476 9.70e-40 142
Msa0884450 MtrunA17_Chr3g0112771 37.551 245 131 7 2 239 222 451 9.75e-40 142
Msa0884450 MtrunA17_Chr3g0118691 35.021 237 134 6 8 236 255 479 9.97e-40 142
Msa0884450 MtrunA17_Chr1g0153451 36.893 206 112 3 48 235 254 459 1.66e-39 142
Msa0884450 MtrunA17_Chr4g0044521 37.083 240 127 5 22 242 231 465 1.70e-39 142
Msa0884450 MtrunA17_Chr5g0431361 33.191 235 139 6 12 240 232 454 1.70e-39 141
Msa0884450 MtrunA17_Chr8g0366391 39.109 202 113 4 48 239 276 477 2.00e-39 142
Msa0884450 MtrunA17_Chr7g0265141 39.759 249 121 12 10 236 241 482 3.05e-39 141
Msa0884450 MtrunA17_Chr6g0449931 36.546 249 121 6 11 239 236 467 3.36e-39 141
Msa0884450 MtrunA17_Chr8g0336331 35.417 240 142 7 4 236 240 473 3.57e-39 141
Msa0884450 MtrunA17_Chr5g0419771 38.049 205 106 6 49 232 301 505 4.06e-39 141
Msa0884450 MtrunA17_Chr6g0454201 37.113 194 113 3 48 236 288 477 5.99e-39 140
Msa0884450 MtrunA17_Chr4g0044501 37.681 207 119 3 44 240 270 476 8.05e-39 140
Msa0884450 MtrunA17_Chr3g0106231 35.169 236 135 6 13 241 229 453 8.58e-39 140
Msa0884450 MtrunA17_Chr7g0275681 38.326 227 123 6 22 232 248 473 9.87e-39 140
Msa0884450 MtrunA17_Chr8g0334861 37.850 214 112 5 44 237 249 461 1.04e-38 140
Msa0884450 MtrunA17_Chr5g0431371 33.191 235 139 5 12 240 227 449 1.19e-38 139
Msa0884450 MtrunA17_Chr7g0243931 38.278 209 111 3 49 239 282 490 1.38e-38 140
Msa0884450 MtrunA17_Chr7g0232341 41.011 178 88 3 48 208 257 434 1.39e-38 139
Msa0884450 MtrunA17_Chr3g0078841 36.548 197 116 3 48 239 285 477 1.61e-38 139
Msa0884450 MtrunA17_Chr7g0243631 37.619 210 112 4 49 239 277 486 1.93e-38 139
Msa0884450 MtrunA17_Chr5g0440421 35.600 250 135 8 13 241 251 495 1.94e-38 139
Msa0884450 MtrunA17_Chr6g0454321 35.965 228 135 5 4 225 241 463 1.96e-38 141
Msa0884450 MtrunA17_Chr7g0265101 37.379 206 111 4 49 236 278 483 2.12e-38 139
Msa0884450 MtrunA17_Chr8g0339631 37.037 216 116 4 39 235 250 464 2.66e-38 139
Msa0884450 MtrunA17_Chr5g0412131 37.755 196 113 4 48 239 279 469 2.66e-38 139
Msa0884450 MtrunA17_Chr7g0243711 36.842 209 114 4 49 239 108 316 3.12e-38 135
Msa0884450 MtrunA17_Chr5g0412101 37.245 196 114 4 48 239 280 470 3.38e-38 138
Msa0884450 MtrunA17_Chr8g0374971 33.891 239 125 7 22 232 240 473 3.39e-38 139
Msa0884450 MtrunA17_Chr6g0454121 36.082 194 115 3 48 236 286 475 3.65e-38 138
Msa0884450 MtrunA17_Chr5g0431421 32.479 234 140 5 12 239 227 448 4.05e-38 138
Msa0884450 MtrunA17_Chr6g0454191 34.728 239 144 6 4 236 245 477 4.24e-38 138
Msa0884450 MtrunA17_Chr4g0066281 35.060 251 138 6 15 241 219 468 4.35e-38 138
Msa0884450 MtrunA17_Chr5g0431401 33.051 236 138 5 12 240 227 449 5.47e-38 137
Msa0884450 MtrunA17_Chr4g0050341 37.879 198 113 3 48 239 297 490 5.72e-38 138
Msa0884450 MtrunA17_Chr6g0454211 38.144 194 111 3 48 236 574 763 6.13e-38 140
Msa0884450 MtrunA17_Chr6g0454211 39.623 106 38 3 48 153 157 236 3.97e-17 80.1
Msa0884450 MtrunA17_Chr1g0179901 36.638 232 126 6 22 232 255 486 7.03e-38 138
Msa0884450 MtrunA17_Chr7g0243681 36.842 228 123 5 31 239 254 479 7.39e-38 138
Msa0884450 MtrunA17_Chr6g0453961 36.364 198 109 3 48 236 297 486 8.35e-38 137
Msa0884450 MtrunA17_Chr6g0454151 34.310 239 143 7 5 236 243 474 8.62e-38 137
Msa0884450 MtrunA17_Chr8g0374901 36.364 209 109 5 48 232 263 471 9.41e-38 137
Msa0884450 MtrunA17_Chr6g0454131 33.058 242 144 6 4 236 243 475 9.94e-38 137
Msa0884450 MtrunA17_Chr8g0359821 37.190 242 134 9 4 234 242 476 1.13e-37 137
Msa0884450 MtrunA17_Chr6g0452771 34.728 239 144 6 4 236 244 476 3.10e-37 136
Msa0884450 MtrunA17_Chr6g0454271 34.536 194 118 3 48 236 94 283 3.39e-37 132
Msa0884450 MtrunA17_Chr6g0453951 33.473 239 147 6 4 236 291 523 3.94e-37 136
Msa0884450 MtrunA17_Chr6g0454341 36.082 194 115 3 48 236 285 474 4.19e-37 135
Msa0884450 MtrunA17_Chr7g0235051 37.624 202 108 3 49 232 245 446 4.89e-37 135
Msa0884450 MtrunA17_Chr8g0374941 35.321 218 117 6 48 241 1202 1419 5.15e-37 138
Msa0884450 MtrunA17_Chr8g0374941 33.333 228 127 7 22 225 239 465 2.70e-32 124
Msa0884450 MtrunA17_Chr8g0374941 33.036 224 125 6 22 221 704 926 6.65e-32 123
Msa0884450 MtrunA17_Chr8g0334831 41.111 180 78 4 48 199 254 433 6.00e-37 135
Msa0884450 MtrunA17_Chr6g0454331 36.082 194 115 3 48 236 286 475 6.36e-37 135
Msa0884450 MtrunA17_Chr5g0423981 35.354 198 111 3 48 236 252 441 7.37e-37 134
Msa0884450 MtrunA17_Chr8g0334851 38.424 203 107 4 48 232 260 462 8.17e-37 135
Msa0884450 MtrunA17_Chr7g0243911 39.216 204 98 5 49 235 22 216 8.27e-37 129
Msa0884450 MtrunA17_Chr7g0243861 38.278 209 111 4 49 239 279 487 1.11e-36 135
Msa0884450 MtrunA17_Chr7g0243761 39.196 199 94 5 49 239 275 454 1.30e-36 134
Msa0884450 MtrunA17_Chr5g0431441 32.917 240 133 5 13 241 245 467 1.34e-36 134
Msa0884450 MtrunA17_Chr5g0401851 37.019 208 114 3 49 239 276 483 1.40e-36 134
Msa0884450 MtrunA17_Chr6g0454361 34.694 196 115 3 48 236 288 477 1.41e-36 134
Msa0884450 MtrunA17_Chr8g0370941 36.818 220 103 6 45 228 258 477 3.28e-36 134
Msa0884450 MtrunA17_Chr7g0265051 36.408 206 113 4 49 236 276 481 3.83e-36 133
Msa0884450 MtrunA17_Chr6g0463851 34.862 218 118 5 48 241 267 484 4.24e-36 133
Msa0884450 MtrunA17_Chr7g0265151 35.294 221 123 5 41 241 265 485 4.34e-36 133
Msa0884450 MtrunA17_Chr4g0066171 34.272 213 120 4 49 241 266 478 4.89e-36 133
Msa0884450 MtrunA17_Chr6g0454291 36.082 194 115 3 48 236 284 473 6.49e-36 132
Msa0884450 MtrunA17_Chr5g0448521 33.061 245 127 8 9 228 224 456 9.61e-36 132
Msa0884450 MtrunA17_Chr5g0429711 34.513 226 129 7 10 228 237 450 1.58e-35 131
Msa0884450 MtrunA17_Chr7g0265041 37.295 244 125 11 22 241 251 490 3.89e-35 130
Msa0884450 MtrunA17_Chr7g0243851 36.842 209 114 4 49 239 234 442 4.40e-35 130
Msa0884450 MtrunA17_Chr8g0350881 35.885 209 110 5 48 232 265 473 4.45e-35 130
Msa0884450 MtrunA17_Chr7g0265111 35.468 203 112 5 49 232 306 508 4.69e-35 130
Msa0884450 MtrunA17_Chr3g0118661 36.139 202 116 4 48 242 287 482 4.76e-35 130
Msa0884450 MtrunA17_Chr6g0454261 33.058 242 144 7 4 236 244 476 6.73e-35 130
Msa0884450 MtrunA17_Chr4g0011051 36.232 207 113 5 49 236 278 484 7.52e-35 130
Msa0884450 MtrunA17_Chr7g0243951 35.885 209 115 5 49 239 276 483 9.99e-35 129
Msa0884450 MtrunA17_Chr7g0243611 42.949 156 81 2 49 196 136 291 1.02e-34 125
Msa0884450 MtrunA17_Chr4g0044481 44.375 160 83 4 22 176 239 397 1.03e-34 128
Msa0884450 MtrunA17_Chr3g0079711 37.705 183 93 4 75 236 3 185 1.12e-34 122
Msa0884450 MtrunA17_Chr6g0454181 35.567 194 116 3 48 236 287 476 1.28e-34 129
Msa0884450 MtrunA17_Chr5g0416741 32.500 240 144 4 16 239 246 483 4.49e-34 127
Msa0884450 MtrunA17_Chr4g0072761 37.363 182 110 2 48 228 263 441 7.57e-34 126
Msa0884450 MtrunA17_Chr8g0355221 33.884 242 140 4 16 239 247 486 1.21e-33 126
Msa0884450 MtrunA17_Chr5g0429681 34.894 235 121 8 10 228 270 488 1.56e-33 126
Msa0884450 MtrunA17_Chr2g0307961 37.838 185 111 4 51 233 280 462 2.18e-33 125
Msa0884450 MtrunA17_Chr1g0207881 44.361 133 70 2 107 236 250 381 2.61e-33 124
Msa0884450 MtrunA17_Chr5g0442561 33.171 205 110 4 49 228 259 461 5.99e-33 124
Msa0884450 MtrunA17_Chr5g0448551 44.776 134 70 2 48 177 259 392 6.77e-33 124
Msa0884450 MtrunA17_Chr6g0454171 33.621 232 126 7 11 236 97 306 7.98e-33 121
Msa0884450 MtrunA17_Chr4g0072771 34.737 190 120 2 48 236 276 462 8.31e-33 124
Msa0884450 MtrunA17_Chr6g0463891 34.146 246 132 7 16 239 247 484 1.32e-32 124
Msa0884450 MtrunA17_Chr2g0329111 33.636 220 124 5 44 241 262 481 1.36e-32 123
Msa0884450 MtrunA17_Chr6g0454371 33.149 181 106 4 71 242 1 175 2.58e-32 116
Msa0884450 MtrunA17_Chr4g0032331 38.202 178 97 4 48 216 255 428 2.59e-32 122
Msa0884450 MtrunA17_Chr8g0355011 33.679 193 118 4 49 236 171 358 3.10e-32 120
Msa0884450 MtrunA17_Chr5g0442521 32.093 215 118 5 48 236 260 472 4.32e-32 122
Msa0884450 MtrunA17_Chr7g0218311 35.096 208 112 5 48 232 269 476 7.04e-32 121
Msa0884450 MtrunA17_Chr5g0442541 33.659 205 109 4 49 228 252 454 7.31e-32 121
Msa0884450 MtrunA17_Chr2g0294931 32.157 255 143 7 10 241 236 483 1.06e-31 121
Msa0884450 MtrunA17_Chr8g0374931 32.245 245 136 7 10 231 236 473 2.38e-31 120
Msa0884450 MtrunA17_Chr7g0243811 44.853 136 67 2 49 176 240 375 2.88e-31 118
Msa0884450 MtrunA17_Chr1g0165701 32.500 240 144 4 16 239 246 483 3.68e-31 119
Msa0884450 MtrunA17_Chr2g0294921 31.102 254 147 7 15 241 380 632 4.04e-31 120
Msa0884450 MtrunA17_Chr3g0118751 30.544 239 123 5 8 241 246 446 4.82e-31 119
Msa0884450 MtrunA17_Chr2g0294941 32.540 252 140 9 15 237 129 379 7.89e-31 117
Msa0884450 MtrunA17_Chr5g0428081 31.687 243 142 6 22 241 240 481 1.19e-30 118
Msa0884450 MtrunA17_Chr6g0454351 34.682 173 100 3 71 236 295 461 2.67e-30 117
Msa0884450 MtrunA17_Chr5g0442511 32.195 205 112 4 49 228 280 482 5.22e-30 116
Msa0884450 MtrunA17_Chr5g0442601 32.683 205 111 4 49 228 662 864 5.50e-30 117
Msa0884450 MtrunA17_Chr5g0442601 35.484 155 78 4 42 174 182 336 4.72e-24 100
Msa0884450 MtrunA17_Chr5g0403641 32.057 209 119 4 47 232 287 495 5.55e-30 116
Msa0884450 MtrunA17_Chr7g0250021 50.000 110 52 2 4 112 220 327 8.10e-30 113
Msa0884450 MtrunA17_Chr5g0442581 31.604 212 118 4 42 228 256 465 1.00e-29 116
Msa0884450 MtrunA17_Chr5g0409591 32.456 228 117 6 13 211 236 455 1.29e-29 115
Msa0884450 MtrunA17_Chr2g0302991 31.818 220 128 5 42 241 247 464 2.18e-29 114
Msa0884450 MtrunA17_Chr5g0419761 35.808 229 118 9 22 225 248 472 2.27e-29 114
Msa0884450 MtrunA17_Chr5g0442491 31.220 205 114 4 49 228 261 463 5.22e-29 113
Msa0884450 MtrunA17_Chr2g0302961 29.545 220 133 5 42 241 250 467 8.25e-29 113
Msa0884450 MtrunA17_Chr8g0361411 32.510 243 139 8 10 241 227 455 8.50e-29 112
Msa0884450 MtrunA17_Chr8g0367221 35.321 218 116 9 43 240 252 464 9.73e-29 114
Msa0884450 MtrunA17_Chr8g0367221 36.723 177 102 5 50 217 1547 1722 3.22e-28 112
Msa0884450 MtrunA17_Chr8g0367221 36.723 177 102 6 50 217 1057 1232 6.92e-28 111
Msa0884450 MtrunA17_Chr8g0369341 31.863 204 126 5 49 241 269 470 1.49e-28 112
Msa0884450 MtrunA17_Chr5g0410941 32.203 236 132 7 22 232 250 482 2.67e-28 112
Msa0884450 MtrunA17_Chr5g0431431 39.024 164 77 5 13 171 179 324 4.46e-27 107
Msa0884450 MtrunA17_Chr5g0420801 34.146 205 122 5 48 241 258 460 5.89e-27 107
Msa0884450 MtrunA17_Chr4g0029131 35.676 185 105 4 50 220 256 440 8.02e-27 108
Msa0884450 MtrunA17_Chr4g0029151 35.676 185 105 4 50 220 264 448 8.34e-27 107
Msa0884450 MtrunA17_Chr5g0416821 30.705 241 133 6 17 239 249 473 9.34e-27 107
Msa0884450 MtrunA17_Chr8g0357361 42.069 145 77 4 44 183 113 255 1.04e-26 103
Msa0884450 MtrunA17_Chr7g0241801 33.862 189 117 6 35 220 227 410 1.10e-26 106
Msa0884450 MtrunA17_Chr7g0231631 31.381 239 132 5 17 239 37 259 1.65e-26 103
Msa0884450 MtrunA17_Chr4g0042931 34.286 245 122 10 13 236 234 460 1.80e-26 106
Msa0884450 MtrunA17_Chr7g0241781 32.683 205 126 7 35 236 227 422 3.66e-26 105
Msa0884450 MtrunA17_Chr7g0232351 41.606 137 62 4 35 153 242 378 4.46e-26 104
Msa0884450 MtrunA17_Chr4g0042891 33.193 238 130 8 13 236 240 462 5.75e-26 105
Msa0884450 MtrunA17_Chr1g0196851 35.676 185 105 6 50 220 296 480 9.80e-26 104
Msa0884450 MtrunA17_Chr4g0066141 37.241 145 77 4 102 232 200 344 2.01e-25 102
Msa0884450 MtrunA17_Chr8g0336261 37.681 138 77 3 71 203 1 134 5.37e-25 96.3
Msa0884450 MtrunA17_Chr6g0466841 31.304 230 143 8 19 241 241 462 1.64e-24 101
Msa0884450 MtrunA17_Chr2g0278721 31.959 194 122 6 51 239 785 973 6.44e-24 100
Msa0884450 MtrunA17_Chr2g0278721 29.614 233 149 6 13 241 243 464 2.75e-22 95.5
Msa0884450 MtrunA17_Chr8g0336251 31.000 200 123 5 49 241 269 460 6.92e-24 99.4
Msa0884450 MtrunA17_Chr6g0466831 32.328 232 138 10 19 241 241 462 7.30e-24 99.4
Msa0884450 MtrunA17_Chr4g0069611 29.583 240 149 8 7 241 235 459 9.54e-24 99.0
Msa0884450 MtrunA17_Chr8g0336321 31.000 200 123 5 49 241 269 460 1.14e-23 98.6
Msa0884450 MtrunA17_Chr6g0454251 45.045 111 56 2 48 153 284 394 3.18e-23 96.7
Msa0884450 MtrunA17_Chr8g0337381 37.500 128 66 2 114 235 2 121 5.60e-23 90.9
Msa0884450 MtrunA17_Chr2g0302851 31.863 204 126 6 13 211 239 434 7.01e-23 96.7
Msa0884450 MtrunA17_Chr3g0092031 30.612 196 126 6 51 241 6 196 7.85e-23 92.4
Msa0884450 MtrunA17_Chr5g0427571 33.533 167 103 4 49 208 103 268 9.98e-23 94.4
Msa0884450 MtrunA17_Chr2g0283041 32.292 192 116 5 37 214 240 431 1.67e-22 95.5
Msa0884450 MtrunA17_Chr4g0039881 31.863 204 126 6 13 211 215 410 9.14e-22 93.2
Msa0884450 MtrunA17_Chr6g0464091 30.802 237 141 8 13 241 248 469 1.29e-21 92.8
Msa0884450 MtrunA17_Chr2g0278741 28.755 233 151 6 13 241 325 546 1.09e-20 90.5
Msa0884450 MtrunA17_Chr2g0319731 35.955 178 103 6 51 217 276 453 9.14e-20 87.8
Msa0884450 MtrunA17_Chr4g0040691 31.818 176 111 4 51 217 261 436 1.49e-19 87.0
Msa0884450 MtrunA17_Chr2g0319791 34.444 180 107 6 49 217 257 436 5.77e-19 85.1
Msa0884450 MtrunA17_Chr7g0243731 47.500 80 41 1 107 185 1 80 2.11e-18 77.0
Msa0884450 MtrunA17_Chr2g0319761 35.088 171 100 6 51 210 259 429 2.48e-18 83.6
Msa0884450 MtrunA17_Chr6g0482061 29.218 243 135 7 13 234 252 478 2.58e-18 83.6
Msa0884450 MtrunA17_Chr6g0454231 33.077 130 80 3 109 236 91 215 4.80e-18 82.8
Msa0884450 MtrunA17_Chr4g0040711 30.682 176 113 4 51 217 261 436 2.12e-17 80.9
Msa0884450 MtrunA17_Chr2g0319801 34.831 178 105 6 51 217 259 436 3.20e-17 80.1
Msa0884450 MtrunA17_Chr2g0319751 30.882 204 130 6 49 241 734 937 4.36e-17 80.1
Msa0884450 MtrunA17_Chr2g0319751 29.143 175 99 7 49 217 257 412 2.43e-16 78.2
Msa0884450 MtrunA17_Chr2g0321331 31.868 182 97 6 46 217 81 245 1.36e-14 71.2
Msa0884450 MtrunA17_Chr4g0029161 30.978 184 87 7 50 220 256 412 5.12e-14 70.9
Msa0884450 MtrunA17_Chr7g0250011 51.923 52 25 0 155 206 1 52 4.70e-13 62.0
Msa0884450 MtrunA17_Chr8g0334841 52.459 61 27 1 45 105 84 142 2.29e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0884450 AT1G05680.1 56.962 237 101 1 4 239 216 452 1.23e-93 282
Msa0884450 AT1G05675.1 56.118 237 103 1 4 239 216 452 5.43e-93 281
Msa0884450 AT2G31750.1 53.527 241 109 2 4 241 216 456 4.19e-90 273
Msa0884450 AT2G31750.2 53.527 241 109 2 4 241 216 456 1.17e-89 273
Msa0884450 AT2G31790.1 51.240 242 112 3 4 240 217 457 5.04e-85 260
Msa0884450 AT2G43840.2 51.667 240 110 4 4 239 209 446 2.75e-80 248
Msa0884450 AT2G43840.1 52.119 236 107 4 8 239 213 446 3.49e-80 248
Msa0884450 AT2G43820.1 52.361 233 103 5 10 237 215 444 8.23e-79 244
Msa0884450 AT1G24100.1 48.899 227 114 2 17 241 234 460 1.90e-76 238
Msa0884450 AT4G15480.1 43.725 247 123 5 4 240 239 479 1.18e-58 193
Msa0884450 AT3G21560.1 46.445 211 101 4 38 240 267 473 4.01e-56 187
Msa0884450 AT1G05560.1 40.851 235 114 6 17 236 224 448 2.17e-53 179
Msa0884450 AT1G05560.2 40.851 235 114 6 17 236 274 498 3.28e-53 179
Msa0884450 AT4G15490.1 41.079 241 134 4 4 239 229 466 1.03e-52 177
Msa0884450 AT1G05530.1 40.506 237 121 6 17 239 224 454 9.32e-52 174
Msa0884450 AT4G15550.1 43.350 203 99 4 49 236 269 470 1.03e-49 169
Msa0884450 AT4G15500.1 38.525 244 134 5 5 239 226 462 2.79e-49 168
Msa0884450 AT4G14090.1 43.523 193 103 3 50 236 260 452 1.04e-47 164
Msa0884450 AT2G15490.3 41.872 203 107 4 48 239 275 477 5.27e-46 160
Msa0884450 AT2G23260.1 35.417 240 146 4 4 237 215 451 9.71e-46 158
Msa0884450 AT2G15490.1 41.262 206 107 4 48 239 275 480 2.13e-45 158
Msa0884450 AT2G30140.2 39.316 234 124 8 13 242 234 453 1.01e-43 153
Msa0884450 AT2G30140.1 39.316 234 124 8 13 242 235 454 1.04e-43 153
Msa0884450 AT2G15480.1 39.409 203 112 4 48 239 278 480 4.29e-43 152
Msa0884450 AT5G05870.1 39.149 235 123 6 13 240 234 455 4.57e-43 152
Msa0884450 AT1G22380.1 36.481 233 132 7 13 236 252 477 1.00e-42 151
Msa0884450 AT3G11340.1 39.698 199 109 4 48 239 250 444 1.34e-42 150
Msa0884450 AT1G01420.1 38.750 240 116 6 13 234 235 461 1.37e-42 150
Msa0884450 AT1G01420.2 38.750 240 116 6 13 234 238 464 1.52e-42 150
Msa0884450 AT4G01070.1 40.394 203 103 4 48 232 258 460 3.96e-42 149
Msa0884450 AT1G22360.1 36.777 242 130 8 11 236 240 474 5.91e-42 149
Msa0884450 AT2G15480.2 38.967 213 109 5 48 239 278 490 5.95e-42 149
Msa0884450 AT1G22400.1 34.468 235 140 6 13 239 253 481 6.33e-42 149
Msa0884450 AT2G23250.1 33.193 238 149 5 4 237 202 433 7.29e-42 148
Msa0884450 AT2G36750.1 37.849 251 130 8 10 241 242 485 8.10e-42 149
Msa0884450 AT2G36970.1 40.816 196 108 4 48 237 275 468 1.75e-41 148
Msa0884450 AT1G78270.1 36.475 244 135 8 14 242 245 483 5.86e-41 146
Msa0884450 AT5G38040.1 37.288 236 120 5 11 239 235 449 6.37e-41 145
Msa0884450 AT2G36800.1 38.559 236 122 8 16 232 249 480 1.25e-40 145
Msa0884450 AT3G46670.1 38.693 199 111 3 48 239 254 448 3.04e-40 144
Msa0884450 AT2G28080.1 35.622 233 132 6 13 239 251 471 5.84e-40 144
Msa0884450 AT5G17050.1 35.323 201 124 3 40 239 261 456 6.00e-40 143
Msa0884450 AT5G59590.1 35.565 239 122 6 13 239 231 449 7.66e-40 143
Msa0884450 AT2G36780.1 35.857 251 135 8 10 241 247 490 1.33e-39 143
Msa0884450 AT5G38010.1 35.983 239 125 5 8 239 236 453 2.08e-39 142
Msa0884450 AT5G59580.1 35.983 239 121 7 13 239 229 447 3.21e-39 141
Msa0884450 AT2G36760.1 39.256 242 121 7 10 232 247 481 3.64e-39 142
Msa0884450 AT4G34138.1 37.069 232 128 8 22 240 253 479 4.69e-39 141
Msa0884450 AT4G36770.1 40.102 197 95 6 48 223 253 447 8.86e-39 140
Msa0884450 AT2G30150.1 34.348 230 131 7 12 236 219 433 9.13e-39 140
Msa0884450 AT3G46660.1 36.017 236 119 6 13 236 237 452 1.06e-38 140
Msa0884450 AT3G55700.1 40.816 196 105 4 51 239 259 450 1.19e-38 140
Msa0884450 AT2G30150.2 34.348 230 131 7 12 236 235 449 1.39e-38 139
Msa0884450 AT1G22340.1 34.188 234 137 7 13 236 252 478 1.47e-38 140
Msa0884450 AT4G34131.1 36.283 226 131 6 22 236 253 476 4.70e-38 138
Msa0884450 AT2G36770.1 35.458 251 136 8 10 241 247 490 1.11e-37 137
Msa0884450 AT3G16520.3 36.364 231 119 8 10 229 236 449 1.37e-37 137
Msa0884450 AT1G22360.2 35.537 242 121 8 11 236 240 462 2.40e-37 136
Msa0884450 AT1G10400.1 39.175 194 109 6 49 236 269 459 3.25e-37 136
Msa0884450 AT3G02100.1 37.629 194 113 2 43 236 271 456 7.18e-37 135
Msa0884450 AT4G34135.1 38.235 204 115 4 48 240 279 482 9.49e-37 135
Msa0884450 AT2G29730.1 35.897 195 117 4 49 236 266 459 1.14e-36 134
Msa0884450 AT5G05860.1 39.487 195 107 4 46 233 251 441 1.19e-36 134
Msa0884450 AT3G16520.2 36.283 226 116 8 10 224 236 444 1.72e-36 134
Msa0884450 AT5G17040.2 33.846 195 123 3 40 233 142 331 2.07e-36 131
Msa0884450 AT3G53160.1 34.783 230 117 8 26 232 256 475 2.21e-36 134
Msa0884450 AT3G16520.1 36.283 226 116 8 10 224 236 444 2.29e-36 133
Msa0884450 AT1G30530.1 34.359 195 122 3 40 233 255 444 3.11e-36 133
Msa0884450 AT3G55710.1 36.325 234 132 6 13 239 231 454 3.88e-36 133
Msa0884450 AT5G17040.1 33.846 195 123 3 40 233 244 433 6.89e-36 132
Msa0884450 AT5G26310.1 37.811 201 101 5 51 228 256 455 8.90e-36 132
Msa0884450 AT5G17030.1 32.990 194 124 3 40 232 260 448 1.33e-35 131
Msa0884450 AT5G05880.1 34.043 235 134 6 13 240 229 449 3.14e-35 130
Msa0884450 AT3G46680.1 36.735 196 113 3 48 236 255 446 7.62e-35 129
Msa0884450 AT3G50740.1 37.799 209 104 7 49 232 259 466 8.23e-35 130
Msa0884450 AT1G22370.1 36.410 195 114 4 48 236 112 302 9.25e-35 126
Msa0884450 AT5G66690.1 36.058 208 108 6 49 232 254 460 2.03e-34 129
Msa0884450 AT4G15280.1 34.123 211 114 5 49 236 262 470 2.85e-34 128
Msa0884450 AT4G15280.2 34.123 211 114 5 49 236 294 502 4.56e-34 128
Msa0884450 AT5G12890.1 36.735 245 124 9 9 236 248 478 6.43e-34 127
Msa0884450 AT1G01390.1 36.250 240 131 5 14 234 226 462 8.00e-34 127
Msa0884450 AT5G05900.1 36.126 191 118 2 46 236 258 444 8.52e-34 126
Msa0884450 AT1G22370.2 36.410 195 114 4 48 236 282 472 9.70e-34 127
Msa0884450 AT3G46720.1 38.021 192 115 1 48 239 253 440 1.01e-33 126
Msa0884450 AT1G01390.2 36.250 240 131 5 14 234 243 479 1.05e-33 127
Msa0884450 AT3G21750.1 34.884 215 109 5 49 236 255 465 1.26e-33 126
Msa0884450 AT2G36790.1 35.918 245 134 7 16 241 249 489 1.48e-33 126
Msa0884450 AT4G15260.1 33.019 212 116 4 49 236 142 351 1.50e-33 124
Msa0884450 AT2G18560.1 34.440 241 125 8 13 235 147 372 2.06e-33 124
Msa0884450 AT3G22250.1 45.139 144 73 3 48 185 273 416 2.76e-33 125
Msa0884450 AT2G16890.2 36.634 202 120 5 49 242 269 470 3.52e-33 125
Msa0884450 AT1G07260.1 32.353 238 139 6 13 239 245 471 4.58e-33 125
Msa0884450 AT3G46690.1 36.181 199 116 3 48 239 255 449 6.10e-33 124
Msa0884450 AT3G46700.1 33.636 220 121 5 38 239 232 444 2.28e-32 122
Msa0884450 AT2G29710.1 34.184 196 120 4 49 236 265 459 3.73e-32 122
Msa0884450 AT3G21790.1 33.486 218 117 5 49 241 266 480 5.41e-32 122
Msa0884450 AT3G21800.1 32.547 212 117 4 49 236 263 472 1.29e-31 121
Msa0884450 AT3G46650.1 35.025 197 113 3 48 235 238 428 1.34e-31 120
Msa0884450 AT1G73880.1 31.489 235 138 7 10 236 244 463 3.96e-31 119
Msa0884450 AT5G05890.1 33.493 209 127 5 39 240 250 453 4.93e-31 119
Msa0884450 AT5G49690.1 37.433 187 104 6 50 233 266 442 8.62e-31 119
Msa0884450 AT2G29740.1 33.498 203 120 5 49 239 275 474 9.14e-31 119
Msa0884450 AT3G21760.1 30.769 247 139 5 13 236 240 477 1.53e-30 118
Msa0884450 AT5G03490.1 35.602 191 116 5 49 236 273 459 1.71e-30 118
Msa0884450 AT2G18570.1 37.766 188 95 7 43 211 254 438 1.84e-30 118
Msa0884450 AT5G14860.1 33.473 239 139 8 23 241 239 477 2.53e-30 117
Msa0884450 AT1G07250.1 29.388 245 154 5 6 239 236 472 5.14e-30 117
Msa0884450 AT2G29750.1 31.683 202 124 4 49 239 275 473 6.53e-30 116
Msa0884450 AT2G26480.1 33.500 200 121 4 48 239 250 445 1.98e-29 115
Msa0884450 AT3G53150.1 32.099 243 132 9 22 232 261 502 3.11e-28 112
Msa0884450 AT1G07240.1 31.795 195 116 5 49 228 272 464 5.24e-28 111
Msa0884450 AT3G21780.1 31.754 211 119 4 49 236 257 465 1.08e-27 110
Msa0884450 AT1G51210.1 34.857 175 108 4 39 211 259 429 9.68e-27 107
Msa0884450 AT5G65550.1 34.673 199 117 7 19 211 243 434 7.04e-26 105
Msa0884450 AT2G16890.3 38.298 141 83 3 49 185 269 409 1.32e-25 103
Msa0884450 AT4G27570.1 32.500 200 122 5 49 239 248 443 4.03e-25 103
Msa0884450 AT1G06000.1 32.377 244 138 8 10 239 203 433 5.34e-25 102
Msa0884450 AT4G27560.1 32.000 200 123 4 49 239 248 443 1.10e-24 102
Msa0884450 AT5G54010.1 31.658 199 123 4 50 239 249 443 1.28e-23 99.0
Msa0884450 AT5G54060.1 32.653 196 118 6 50 235 267 458 2.83e-23 97.8
Msa0884450 AT5G53990.1 31.088 193 124 3 50 233 243 435 5.64e-23 97.1
Msa0884450 AT2G22590.1 29.648 199 126 6 50 239 273 466 7.69e-23 96.7
Msa0884450 AT5G37950.2 35.669 157 77 3 8 157 202 341 1.15e-22 95.1
Msa0884450 AT5G37950.1 35.669 157 77 3 8 157 208 347 1.41e-22 94.7
Msa0884450 AT1G50580.1 32.124 193 122 3 50 233 244 436 2.63e-22 95.1
Msa0884450 AT1G64910.1 30.052 193 126 4 50 233 243 435 1.38e-21 93.2
Msa0884450 AT3G29630.1 30.928 194 124 4 51 234 246 439 1.06e-19 87.8
Msa0884450 AT3G29630.2 30.928 194 124 4 51 234 220 413 1.23e-19 87.4
Msa0884450 AT2G22930.1 30.049 203 133 3 41 234 234 436 2.14e-19 86.7
Msa0884450 AT1G64920.1 28.643 199 125 4 50 233 243 439 3.47e-18 83.6
Msa0884450 AT4G09500.2 29.891 184 120 3 59 233 252 435 1.03e-17 82.0
Msa0884450 AT4G09500.1 30.952 168 107 3 59 217 227 394 1.13e-17 81.6
Msa0884450 AT4G01070.2 44.944 89 33 2 48 120 258 346 8.82e-15 73.2

Find 44 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGTCCTATTGTCTTTAA+TGG 0.180171 6_1:-37786427 None:intergenic
TGCTTTGAAATGGAAGAATT+TGG 0.190258 6_1:+37787020 Msa0884450:CDS
ATCAGTGCCATCTATGTTAT+TGG 0.224424 6_1:+37786447 Msa0884450:CDS
ATAGTGAAAGTTATTTCTTA+TGG 0.261193 6_1:+37786644 Msa0884450:CDS
CAAACACAAGAACTAGCTTT+AGG 0.323770 6_1:+37786613 Msa0884450:CDS
TATTGCTGATGTGTGGAAAA+TGG 0.324204 6_1:+37786891 Msa0884450:CDS
GAAATAATTGAGACTGAAAA+AGG 0.329294 6_1:+37786979 Msa0884450:CDS
TAGTGAAAGTTATTTCTTAT+GGG 0.350163 6_1:+37786645 Msa0884450:CDS
CTCAAAGATGACAAAGAATA+TGG 0.353363 6_1:+37786478 Msa0884450:CDS
CGTTGATTGCAATGCCGCTT+TGG 0.354076 6_1:+37786842 Msa0884450:CDS
GATGATTCCACAAACCCTTT+TGG 0.355174 6_1:-37786697 None:intergenic
TGAAGAATTTGTGGCTGCTT+TGG 0.359404 6_1:+37787086 Msa0884450:CDS
TTGATGCAAAATTCTGTGTT+TGG 0.366703 6_1:-37786517 None:intergenic
GCTTCATTTGGTAGCATGGC+TGG 0.376902 6_1:+37786577 Msa0884450:CDS
TCAGTTGTGTATGCTTCATT+TGG 0.388256 6_1:+37786565 Msa0884450:CDS
GTGTTAACACATGAAGCATT+AGG 0.401364 6_1:+37786760 Msa0884450:CDS
GATCAAAGTAAGCTTCCAAA+AGG 0.453618 6_1:+37786682 Msa0884450:CDS
TAAGCTTCCAAAAGGGTTTG+TGG 0.453622 6_1:+37786690 Msa0884450:CDS
ATTTGATTTAGGTGGTTGAT+TGG 0.455899 6_1:+37786389 Msa0884450:intron
AACAATTAAGAATTGCATAA+AGG 0.459142 6_1:+37786957 Msa0884450:CDS
TTTGTGGAATCATCAAAGAA+AGG 0.469200 6_1:+37786706 Msa0884450:CDS
TTGATTGGTTAGTGAAGATA+TGG 0.475425 6_1:+37786404 Msa0884450:CDS
ACATTGGAAGCTTTGAGCAT+TGG 0.483808 6_1:+37786814 Msa0884450:CDS
ATTGCTGATGTGTGGAAAAT+GGG 0.496220 6_1:+37786892 Msa0884450:CDS
ATATGGCCATTAAAGACAAT+AGG 0.502416 6_1:+37786421 Msa0884450:CDS
CTTTGCATTCGTAACTTGAT+CGG 0.507042 6_1:-37786866 None:intergenic
GTATGCTTCATTTGGTAGCA+TGG 0.507185 6_1:+37786573 Msa0884450:CDS
GAAATGGAAGAATTTGGCTA+AGG 0.509882 6_1:+37787026 Msa0884450:CDS
GCATACACAACTGAACCTTT+AGG 0.517634 6_1:-37786556 None:intergenic
TGGCTAAATGATAAGCCTAA+AGG 0.533968 6_1:+37786541 Msa0884450:CDS
ATCAAAGTAAGCTTCCAAAA+GGG 0.560368 6_1:+37786683 Msa0884450:CDS
GCTAAGGATTCTGTTGATGA+GGG 0.562446 6_1:+37787042 Msa0884450:CDS
GGCTAAGGATTCTGTTGATG+AGG 0.567753 6_1:+37787041 Msa0884450:CDS
AATAACATAGATGGCACTGA+TGG 0.583618 6_1:-37786445 None:intergenic
TTGTGGTTGGAACTCGACAT+TGG 0.586441 6_1:+37786798 Msa0884450:CDS
TGTGTTAACACTAGTAATTG+TGG 0.587343 6_1:-37786748 None:intergenic
GAATCACAATCAAATGCGAC+TGG 0.602718 6_1:+37786327 None:intergenic
ATTCTGTGTTTGGATCTGAA+AGG 0.602763 6_1:-37786507 None:intergenic
AAGGATTCTGTTGATGAGGG+TGG 0.610303 6_1:+37787045 Msa0884450:CDS
CAAAGCGGCATTGCAATCAA+CGG 0.629608 6_1:-37786841 None:intergenic
CAAAGCTTATTGCTGATGTG+TGG 0.657129 6_1:+37786884 Msa0884450:CDS
AGAAAGGTTTAATAGTGACA+TGG 0.676362 6_1:+37786722 Msa0884450:CDS
TAGCATGGCTGGTCTCAATG+AGG 0.680726 6_1:+37786588 Msa0884450:CDS
GTAACTTGATCGGTCCAAAG+CGG 0.716923 6_1:-37786856 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATATTGAAGAATTTG+TGG + chr6_1:37787077-37787096 Msa0884450:CDS 15.0%
!! TAAAAATATTGAAGAATTTG+TGG + chr6_1:37787077-37787096 Msa0884450:CDS 15.0%
!! TTATCAACAGAAAATAAAGA+CGG - chr6_1:37786358-37786377 None:intergenic 20.0%
!!! TTCAAATCTGAATTTGATTT+AGG + chr6_1:37786378-37786397 Msa0884450:intron 20.0%
!!! ATAGTGAAAGTTATTTCTTA+TGG + chr6_1:37786644-37786663 Msa0884450:CDS 20.0%
!!! TAGTGAAAGTTATTTCTTAT+GGG + chr6_1:37786645-37786664 Msa0884450:CDS 20.0%
!! AACAATTAAGAATTGCATAA+AGG + chr6_1:37786957-37786976 Msa0884450:CDS 20.0%
!!! TTAAGAAAAATGCTTTGAAA+TGG + chr6_1:37787010-37787029 Msa0884450:CDS 20.0%
!! TTATCAACAGAAAATAAAGA+CGG - chr6_1:37786358-37786377 None:intergenic 20.0%
!!! TTCAAATCTGAATTTGATTT+AGG + chr6_1:37786378-37786397 Msa0884450:intron 20.0%
!!! ATAGTGAAAGTTATTTCTTA+TGG + chr6_1:37786644-37786663 Msa0884450:CDS 20.0%
!!! TAGTGAAAGTTATTTCTTAT+GGG + chr6_1:37786645-37786664 Msa0884450:CDS 20.0%
!! AACAATTAAGAATTGCATAA+AGG + chr6_1:37786957-37786976 Msa0884450:CDS 20.0%
!!! TTAAGAAAAATGCTTTGAAA+TGG + chr6_1:37787010-37787029 Msa0884450:CDS 20.0%
!! AAATCTGAATTTGATTTAGG+TGG + chr6_1:37786381-37786400 Msa0884450:intron 25.0%
! GAAATAATTGAGACTGAAAA+AGG + chr6_1:37786979-37786998 Msa0884450:CDS 25.0%
!! AAATCTGAATTTGATTTAGG+TGG + chr6_1:37786381-37786400 Msa0884450:intron 25.0%
! GAAATAATTGAGACTGAAAA+AGG + chr6_1:37786979-37786998 Msa0884450:CDS 25.0%
! ATTTGATTTAGGTGGTTGAT+TGG + chr6_1:37786389-37786408 Msa0884450:intron 30.0%
! TTGATTGGTTAGTGAAGATA+TGG + chr6_1:37786404-37786423 Msa0884450:CDS 30.0%
ATATGGCCATTAAAGACAAT+AGG + chr6_1:37786421-37786440 Msa0884450:CDS 30.0%
! CTTTTGTCCAATAACATAGA+TGG - chr6_1:37786457-37786476 None:intergenic 30.0%
CTCAAAGATGACAAAGAATA+TGG + chr6_1:37786478-37786497 Msa0884450:CDS 30.0%
TTGATGCAAAATTCTGTGTT+TGG - chr6_1:37786520-37786539 None:intergenic 30.0%
! ACACAGAATTTTGCATCAAA+TGG + chr6_1:37786521-37786540 Msa0884450:CDS 30.0%
ATCAAAGTAAGCTTCCAAAA+GGG + chr6_1:37786683-37786702 Msa0884450:CDS 30.0%
TTTGTGGAATCATCAAAGAA+AGG + chr6_1:37786706-37786725 Msa0884450:CDS 30.0%
AGAAAGGTTTAATAGTGACA+TGG + chr6_1:37786722-37786741 Msa0884450:CDS 30.0%
TGTGTTAACACTAGTAATTG+TGG - chr6_1:37786751-37786770 None:intergenic 30.0%
!! TGCTTTGAAATGGAAGAATT+TGG + chr6_1:37787020-37787039 Msa0884450:CDS 30.0%
! ATTTGATTTAGGTGGTTGAT+TGG + chr6_1:37786389-37786408 Msa0884450:intron 30.0%
! TTGATTGGTTAGTGAAGATA+TGG + chr6_1:37786404-37786423 Msa0884450:CDS 30.0%
ATATGGCCATTAAAGACAAT+AGG + chr6_1:37786421-37786440 Msa0884450:CDS 30.0%
! CTTTTGTCCAATAACATAGA+TGG - chr6_1:37786457-37786476 None:intergenic 30.0%
CTCAAAGATGACAAAGAATA+TGG + chr6_1:37786478-37786497 Msa0884450:CDS 30.0%
TTGATGCAAAATTCTGTGTT+TGG - chr6_1:37786520-37786539 None:intergenic 30.0%
! ACACAGAATTTTGCATCAAA+TGG + chr6_1:37786521-37786540 Msa0884450:CDS 30.0%
ATCAAAGTAAGCTTCCAAAA+GGG + chr6_1:37786683-37786702 Msa0884450:CDS 30.0%
TTTGTGGAATCATCAAAGAA+AGG + chr6_1:37786706-37786725 Msa0884450:CDS 30.0%
AGAAAGGTTTAATAGTGACA+TGG + chr6_1:37786722-37786741 Msa0884450:CDS 30.0%
TGTGTTAACACTAGTAATTG+TGG - chr6_1:37786751-37786770 None:intergenic 30.0%
!! TGCTTTGAAATGGAAGAATT+TGG + chr6_1:37787020-37787039 Msa0884450:CDS 30.0%
CAACAGAAAATAAAGACGGT+AGG - chr6_1:37786354-37786373 None:intergenic 35.0%
GATGGTCCTATTGTCTTTAA+TGG - chr6_1:37786430-37786449 None:intergenic 35.0%
! AATAACATAGATGGCACTGA+TGG - chr6_1:37786448-37786467 None:intergenic 35.0%
ATCAGTGCCATCTATGTTAT+TGG + chr6_1:37786447-37786466 Msa0884450:CDS 35.0%
ATTCTGTGTTTGGATCTGAA+AGG - chr6_1:37786510-37786529 None:intergenic 35.0%
TGGCTAAATGATAAGCCTAA+AGG + chr6_1:37786541-37786560 Msa0884450:CDS 35.0%
TCAGTTGTGTATGCTTCATT+TGG + chr6_1:37786565-37786584 Msa0884450:CDS 35.0%
!! CAAACACAAGAACTAGCTTT+AGG + chr6_1:37786613-37786632 Msa0884450:CDS 35.0%
GATCAAAGTAAGCTTCCAAA+AGG + chr6_1:37786682-37786701 Msa0884450:CDS 35.0%
! GTGTTAACACATGAAGCATT+AGG + chr6_1:37786760-37786779 Msa0884450:CDS 35.0%
CTTTGCATTCGTAACTTGAT+CGG - chr6_1:37786869-37786888 None:intergenic 35.0%
TATTGCTGATGTGTGGAAAA+TGG + chr6_1:37786891-37786910 Msa0884450:CDS 35.0%
ATTGCTGATGTGTGGAAAAT+GGG + chr6_1:37786892-37786911 Msa0884450:CDS 35.0%
GAAATGGAAGAATTTGGCTA+AGG + chr6_1:37787026-37787045 Msa0884450:CDS 35.0%
CAACAGAAAATAAAGACGGT+AGG - chr6_1:37786354-37786373 None:intergenic 35.0%
GATGGTCCTATTGTCTTTAA+TGG - chr6_1:37786430-37786449 None:intergenic 35.0%
! AATAACATAGATGGCACTGA+TGG - chr6_1:37786448-37786467 None:intergenic 35.0%
ATCAGTGCCATCTATGTTAT+TGG + chr6_1:37786447-37786466 Msa0884450:CDS 35.0%
ATTCTGTGTTTGGATCTGAA+AGG - chr6_1:37786510-37786529 None:intergenic 35.0%
TGGCTAAATGATAAGCCTAA+AGG + chr6_1:37786541-37786560 Msa0884450:CDS 35.0%
TCAGTTGTGTATGCTTCATT+TGG + chr6_1:37786565-37786584 Msa0884450:CDS 35.0%
!! CAAACACAAGAACTAGCTTT+AGG + chr6_1:37786613-37786632 Msa0884450:CDS 35.0%
GATCAAAGTAAGCTTCCAAA+AGG + chr6_1:37786682-37786701 Msa0884450:CDS 35.0%
! GTGTTAACACATGAAGCATT+AGG + chr6_1:37786760-37786779 Msa0884450:CDS 35.0%
CTTTGCATTCGTAACTTGAT+CGG - chr6_1:37786869-37786888 None:intergenic 35.0%
TATTGCTGATGTGTGGAAAA+TGG + chr6_1:37786891-37786910 Msa0884450:CDS 35.0%
ATTGCTGATGTGTGGAAAAT+GGG + chr6_1:37786892-37786911 Msa0884450:CDS 35.0%
GAAATGGAAGAATTTGGCTA+AGG + chr6_1:37787026-37787045 Msa0884450:CDS 35.0%
GCATACACAACTGAACCTTT+AGG - chr6_1:37786559-37786578 None:intergenic 40.0%
! GTATGCTTCATTTGGTAGCA+TGG + chr6_1:37786573-37786592 Msa0884450:CDS 40.0%
TAAGCTTCCAAAAGGGTTTG+TGG + chr6_1:37786690-37786709 Msa0884450:CDS 40.0%
! GATGATTCCACAAACCCTTT+TGG - chr6_1:37786700-37786719 None:intergenic 40.0%
!! GGTTGTTTTGTGACACATTG+TGG + chr6_1:37786781-37786800 Msa0884450:CDS 40.0%
! GTTTTGTGACACATTGTGGT+TGG + chr6_1:37786785-37786804 Msa0884450:CDS 40.0%
!! ACATTGGAAGCTTTGAGCAT+TGG + chr6_1:37786814-37786833 Msa0884450:CDS 40.0%
CAAAGCTTATTGCTGATGTG+TGG + chr6_1:37786884-37786903 Msa0884450:CDS 40.0%
! GCTAAGGATTCTGTTGATGA+GGG + chr6_1:37787042-37787061 Msa0884450:CDS 40.0%
TGAAGAATTTGTGGCTGCTT+TGG + chr6_1:37787086-37787105 Msa0884450:CDS 40.0%
GCATACACAACTGAACCTTT+AGG - chr6_1:37786559-37786578 None:intergenic 40.0%
! GTATGCTTCATTTGGTAGCA+TGG + chr6_1:37786573-37786592 Msa0884450:CDS 40.0%
TAAGCTTCCAAAAGGGTTTG+TGG + chr6_1:37786690-37786709 Msa0884450:CDS 40.0%
! GATGATTCCACAAACCCTTT+TGG - chr6_1:37786700-37786719 None:intergenic 40.0%
!! GGTTGTTTTGTGACACATTG+TGG + chr6_1:37786781-37786800 Msa0884450:CDS 40.0%
! GTTTTGTGACACATTGTGGT+TGG + chr6_1:37786785-37786804 Msa0884450:CDS 40.0%
!! ACATTGGAAGCTTTGAGCAT+TGG + chr6_1:37786814-37786833 Msa0884450:CDS 40.0%
CAAAGCTTATTGCTGATGTG+TGG + chr6_1:37786884-37786903 Msa0884450:CDS 40.0%
! GCTAAGGATTCTGTTGATGA+GGG + chr6_1:37787042-37787061 Msa0884450:CDS 40.0%
TGAAGAATTTGTGGCTGCTT+TGG + chr6_1:37787086-37787105 Msa0884450:CDS 40.0%
TTGTGGTTGGAACTCGACAT+TGG + chr6_1:37786798-37786817 Msa0884450:CDS 45.0%
CAAAGCGGCATTGCAATCAA+CGG - chr6_1:37786844-37786863 None:intergenic 45.0%
GTAACTTGATCGGTCCAAAG+CGG - chr6_1:37786859-37786878 None:intergenic 45.0%
GGCTAAGGATTCTGTTGATG+AGG + chr6_1:37787041-37787060 Msa0884450:CDS 45.0%
! AAGGATTCTGTTGATGAGGG+TGG + chr6_1:37787045-37787064 Msa0884450:CDS 45.0%
TTGTGGTTGGAACTCGACAT+TGG + chr6_1:37786798-37786817 Msa0884450:CDS 45.0%
CAAAGCGGCATTGCAATCAA+CGG - chr6_1:37786844-37786863 None:intergenic 45.0%
GTAACTTGATCGGTCCAAAG+CGG - chr6_1:37786859-37786878 None:intergenic 45.0%
GGCTAAGGATTCTGTTGATG+AGG + chr6_1:37787041-37787060 Msa0884450:CDS 45.0%
! AAGGATTCTGTTGATGAGGG+TGG + chr6_1:37787045-37787064 Msa0884450:CDS 45.0%
! GCTTCATTTGGTAGCATGGC+TGG + chr6_1:37786577-37786596 Msa0884450:CDS 50.0%
!! TAGCATGGCTGGTCTCAATG+AGG + chr6_1:37786588-37786607 Msa0884450:CDS 50.0%
! CGTTGATTGCAATGCCGCTT+TGG + chr6_1:37786842-37786861 Msa0884450:CDS 50.0%
! GCTTCATTTGGTAGCATGGC+TGG + chr6_1:37786577-37786596 Msa0884450:CDS 50.0%
!! TAGCATGGCTGGTCTCAATG+AGG + chr6_1:37786588-37786607 Msa0884450:CDS 50.0%
! CGTTGATTGCAATGCCGCTT+TGG + chr6_1:37786842-37786861 Msa0884450:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 37786340 37787119 37786340 ID=Msa0884450;Name=Msa0884450
chr6_1 mRNA 37786340 37787119 37786340 ID=Msa0884450-mRNA-1;Parent=Msa0884450;Name=Msa0884450-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.5|0|0.5|2|0|242
chr6_1 exon 37786340 37786348 37786340 ID=Msa0884450-mRNA-1:exon:8872;Parent=Msa0884450-mRNA-1
chr6_1 exon 37786400 37787119 37786400 ID=Msa0884450-mRNA-1:exon:8873;Parent=Msa0884450-mRNA-1
chr6_1 CDS 37786340 37786348 37786340 ID=Msa0884450-mRNA-1:cds;Parent=Msa0884450-mRNA-1
chr6_1 CDS 37786400 37787119 37786400 ID=Msa0884450-mRNA-1:cds;Parent=Msa0884450-mRNA-1
Gene Sequence

>Msa0884450

ATGCGACTGGTGGTTGATTGGTTAGTGAAGATATGGCCATTAAAGACAATAGGACCATCAGTGCCATCTATGTTATTGGACAAAAGACTCAAAGATGACAAAGAATATGGTGTAAGCCTTTCAGATCCAAACACAGAATTTTGCATCAAATGGCTAAATGATAAGCCTAAAGGTTCAGTTGTGTATGCTTCATTTGGTAGCATGGCTGGTCTCAATGAGGAGCAAACACAAGAACTAGCTTTAGGATTAAAAGATAGTGAAAGTTATTTCTTATGGGTTGTTAGAGAATGTGATCAAAGTAAGCTTCCAAAAGGGTTTGTGGAATCATCAAAGAAAGGTTTAATAGTGACATGGTGTCCACAATTACTAGTGTTAACACATGAAGCATTAGGTTGTTTTGTGACACATTGTGGTTGGAACTCGACATTGGAAGCTTTGAGCATTGGTGTTCCGTTGATTGCAATGCCGCTTTGGACCGATCAAGTTACGAATGCAAAGCTTATTGCTGATGTGTGGAAAATGGGAGTTAGAGCTGTTGCTGATGAGAAAGAGATTGTTAGAAGTGAAACAATTAAGAATTGCATAAAGGAAATAATTGAGACTGAAAAAGGAAGTGAAATTAAGAAAAATGCTTTGAAATGGAAGAATTTGGCTAAGGATTCTGTTGATGAGGGTGGAAGATCTGATAAAAATATTGAAGAATTTGTGGCTGCTTTGGCTCAATGTTGA
Protein sequence

>Msa0884450

MRLVVDWLVKIWPLKTIGPSVPSMLLDKRLKDDKEYGVSLSDPNTEFCIKWLNDKPKGSVVYASFGSMAGLNEEQTQELALGLKDSESYFLWVVRECDQSKLPKGFVESSKKGLIVTWCPQLLVLTHEALGCFVTHCGWNSTLEALSIGVPLIAMPLWTDQVTNAKLIADVWKMGVRAVADEKEIVRSETIKNCIKEIIETEKGSEIKKNALKWKNLAKDSVDEGGRSDKNIEEFVAALAQC*