AlfalfaGEDB | Msa0884450

M. sativa cultivar zhongmu-4 / Msa0884450

KEGG: K13691|K21374
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
PFAM: PF00201.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0884450	XP_013451916.2	98.745	239	3	0	4	242	218	456	4.19e-168	482

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0884450	sp\|K7NBW3\|74AC1_SIRGR	55.417	240	105	2	4	241	214	453	1.51e-96	292

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0884450	A0A396HCR2	98.745	239	3	0	4	242	218	456	2.00e-168	482

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0119850	Msa0884450	0.813073	3.078579e-51	-8.615850e-47
Msa0185640	Msa0884450	-0.809533	1.805576e-50	-8.615850e-47
Msa0258670	Msa0884450	-0.806090	9.738185e-50	-8.615850e-47
Msa0342340	Msa0884450	-0.804895	1.734533e-49	-8.615850e-47
Msa0380040	Msa0884450	0.811275	7.595600e-51	-8.615850e-47
Msa0467900	Msa0884450	-0.837095	6.363839e-57	-8.615850e-47
Msa0467960	Msa0884450	-0.800201	1.610504e-48	-8.615850e-47
Msa0519220	Msa0884450	0.805378	1.373878e-49	-8.615850e-47
Msa0540070	Msa0884450	0.815625	8.401444e-52	-8.615850e-47
Msa0576240	Msa0884450	0.814583	1.431059e-51	-8.615850e-47

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0884450	MtrunA17_Chr6g0464861	98.745	239	3	0	4	242	218	456	3.85e-172	482
Msa0884450	MtrunA17_Chr6g0464841	92.887	239	17	0	4	242	219	457	3.09e-164	462
Msa0884450	MtrunA17_Chr6g0464871	86.975	238	31	0	4	241	231	468	6.15e-148	421
Msa0884450	MtrunA17_Chr6g0464881	68.220	236	75	0	4	239	219	454	3.27e-122	355
Msa0884450	MtrunA17_Chr6g0464921	68.333	240	75	1	4	242	219	458	5.12e-117	342
Msa0884450	MtrunA17_Chr7g0249961	65.417	240	81	2	1	239	21	259	4.11e-112	323
Msa0884450	MtrunA17_Chr7g0249981	67.089	237	76	2	4	239	231	466	6.76e-111	327
Msa0884450	MtrunA17_Chr7g0250001	60.000	235	92	2	6	239	214	447	2.25e-101	302
Msa0884450	MtrunA17_Chr7g0249931	55.833	240	102	3	4	241	248	485	1.34e-92	280
Msa0884450	MtrunA17_Chr5g0414331	55.230	239	106	1	4	241	217	455	8.12e-90	273

Showing 1 to 10 of 277 entries

Previous1 2 3 4 5…28Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0884450	AT1G05680.1	56.962	237	101	1	4	239	216	452	1.23e-93	282
Msa0884450	AT1G05675.1	56.118	237	103	1	4	239	216	452	5.43e-93	281
Msa0884450	AT2G31750.1	53.527	241	109	2	4	241	216	456	4.19e-90	273
Msa0884450	AT2G31750.2	53.527	241	109	2	4	241	216	456	1.17e-89	273
Msa0884450	AT2G31790.1	51.240	242	112	3	4	240	217	457	5.04e-85	260
Msa0884450	AT2G43840.2	51.667	240	110	4	4	239	209	446	2.75e-80	248
Msa0884450	AT2G43840.1	52.119	236	107	4	8	239	213	446	3.49e-80	248
Msa0884450	AT2G43820.1	52.361	233	103	5	10	237	215	444	8.23e-79	244
Msa0884450	AT1G24100.1	48.899	227	114	2	17	241	234	460	1.90e-76	238
Msa0884450	AT4G15480.1	43.725	247	123	5	4	240	239	479	1.18e-58	193

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

Find 44 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTAAGAATTGCATAA+AGG	0.459142	6_1:+37786957	Msa0884450:CDS
AAGGATTCTGTTGATGAGGG+TGG	0.610303	6_1:+37787045	Msa0884450:CDS
AATAACATAGATGGCACTGA+TGG	0.583618	6_1:-37786445	None:intergenic
ACATTGGAAGCTTTGAGCAT+TGG	0.483808	6_1:+37786814	Msa0884450:CDS
AGAAAGGTTTAATAGTGACA+TGG	0.676362	6_1:+37786722	Msa0884450:CDS
ATAGTGAAAGTTATTTCTTA+TGG	0.261193	6_1:+37786644	Msa0884450:CDS
ATATGGCCATTAAAGACAAT+AGG	0.502416	6_1:+37786421	Msa0884450:CDS
ATCAAAGTAAGCTTCCAAAA+GGG	0.560368	6_1:+37786683	Msa0884450:CDS
ATCAGTGCCATCTATGTTAT+TGG	0.224424	6_1:+37786447	Msa0884450:CDS
ATTCTGTGTTTGGATCTGAA+AGG	0.602763	6_1:-37786507	None:intergenic

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATATGGCCATTAAAGACAAT+AGG	+	chr6_1:37786421-37786440	Msa0884450:CDS	30.0%
CTCAAAGATGACAAAGAATA+TGG	+	chr6_1:37786478-37786497	Msa0884450:CDS	30.0%
TTGATGCAAAATTCTGTGTT+TGG	-	chr6_1:37786520-37786539	None:intergenic	30.0%
ATCAAAGTAAGCTTCCAAAA+GGG	+	chr6_1:37786683-37786702	Msa0884450:CDS	30.0%
TTTGTGGAATCATCAAAGAA+AGG	+	chr6_1:37786706-37786725	Msa0884450:CDS	30.0%
AGAAAGGTTTAATAGTGACA+TGG	+	chr6_1:37786722-37786741	Msa0884450:CDS	30.0%
TGTGTTAACACTAGTAATTG+TGG	-	chr6_1:37786751-37786770	None:intergenic	30.0%
ATATGGCCATTAAAGACAAT+AGG	+	chr6_1:37786421-37786440	Msa0884450:CDS	30.0%
CTCAAAGATGACAAAGAATA+TGG	+	chr6_1:37786478-37786497	Msa0884450:CDS	30.0%
TTGATGCAAAATTCTGTGTT+TGG	-	chr6_1:37786520-37786539	None:intergenic	30.0%

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	37786340	37787119	37786340	ID=Msa0884450;Name=Msa0884450
chr6_1	mRNA	37786340	37787119	37786340	ID=Msa0884450-mRNA-1;Parent=Msa0884450;Name=Msa0884450-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|0.5\|0\|0.5\|2\|0\|242
chr6_1	exon	37786340	37786348	37786340	ID=Msa0884450-mRNA-1:exon:8872;Parent=Msa0884450-mRNA-1
chr6_1	exon	37786400	37787119	37786400	ID=Msa0884450-mRNA-1:exon:8873;Parent=Msa0884450-mRNA-1
chr6_1	CDS	37786340	37786348	37786340	ID=Msa0884450-mRNA-1:cds;Parent=Msa0884450-mRNA-1
chr6_1	CDS	37786400	37787119	37786400	ID=Msa0884450-mRNA-1:cds;Parent=Msa0884450-mRNA-1

Gene Sequence

>Msa0884450

ATGCGACTGGTGGTTGATTGGTTAGTGAAGATATGGCCATTAAAGACAATAGGACCATCAGTGCCATCTATGTTATTGGACAAAAGACTCAAAGATGACAAAGAATATGGTGTAAGCCTTTCAGATCCAAACACAGAATTTTGCATCAAATGGCTAAATGATAAGCCTAAAGGTTCAGTTGTGTATGCTTCATTTGGTAGCATGGCTGGTCTCAATGAGGAGCAAACACAAGAACTAGCTTTAGGATTAAAAGATAGTGAAAGTTATTTCTTATGGGTTGTTAGAGAATGTGATCAAAGTAAGCTTCCAAAAGGGTTTGTGGAATCATCAAAGAAAGGTTTAATAGTGACATGGTGTCCACAATTACTAGTGTTAACACATGAAGCATTAGGTTGTTTTGTGACACATTGTGGTTGGAACTCGACATTGGAAGCTTTGAGCATTGGTGTTCCGTTGATTGCAATGCCGCTTTGGACCGATCAAGTTACGAATGCAAAGCTTATTGCTGATGTGTGGAAAATGGGAGTTAGAGCTGTTGCTGATGAGAAAGAGATTGTTAGAAGTGAAACAATTAAGAATTGCATAAAGGAAATAATTGAGACTGAAAAAGGAAGTGAAATTAAGAAAAATGCTTTGAAATGGAAGAATTTGGCTAAGGATTCTGTTGATGAGGGTGGAAGATCTGATAAAAATATTGAAGAATTTGTGGCTGCTTTGGCTCAATGTTGA

Protein sequence

>Msa0884450

MRLVVDWLVKIWPLKTIGPSVPSMLLDKRLKDDKEYGVSLSDPNTEFCIKWLNDKPKGSVVYASFGSMAGLNEEQTQELALGLKDSESYFLWVVRECDQSKLPKGFVESSKKGLIVTWCPQLLVLTHEALGCFVTHCGWNSTLEALSIGVPLIAMPLWTDQVTNAKLIADVWKMGVRAVADEKEIVRSETIKNCIKEIIETEKGSEIKKNALKWKNLAKDSVDEGGRSDKNIEEFVAALAQC*