Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576240 | XP_003631124.2 | 97.773 | 494 | 10 | 1 | 1 | 493 | 1 | 494 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576240 | sp|Q9M571|PEAMT_SPIOL | 72.672 | 494 | 134 | 1 | 1 | 493 | 1 | 494 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576240 | G7LE68 | 97.773 | 494 | 10 | 1 | 1 | 493 | 1 | 494 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0576240 | -0.812958 | 3.262212e-51 | -8.615850e-47 |
| Msa0038350 | Msa0576240 | -0.818220 | 2.196038e-52 | -8.615850e-47 |
| Msa0044710 | Msa0576240 | 0.821789 | 3.350320e-53 | -8.615850e-47 |
| Msa0111310 | Msa0576240 | 0.814974 | 1.172406e-51 | -8.615850e-47 |
| Msa0129790 | Msa0576240 | -0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa0142420 | Msa0576240 | 0.829807 | 4.185874e-55 | -8.615850e-47 |
| Msa0156650 | Msa0576240 | -0.804518 | 2.078347e-49 | -8.615850e-47 |
| Msa0182930 | Msa0576240 | 0.813435 | 2.563388e-51 | -8.615850e-47 |
| Msa0185640 | Msa0576240 | -0.825080 | 5.695478e-54 | -8.615850e-47 |
| Msa0196130 | Msa0576240 | -0.813453 | 2.540193e-51 | -8.615850e-47 |
| Msa0200950 | Msa0576240 | -0.843737 | 1.165900e-58 | -8.615850e-47 |
| Msa0377280 | Msa0576240 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa0378080 | Msa0576240 | 0.803318 | 3.691058e-49 | -8.615850e-47 |
| Msa0380040 | Msa0576240 | 0.830433 | 2.944974e-55 | -8.615850e-47 |
| Msa0404690 | Msa0576240 | 0.800690 | 1.280618e-48 | -8.615850e-47 |
| Msa0412190 | Msa0576240 | 0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa0429290 | Msa0576240 | 0.825354 | 4.908082e-54 | -8.615850e-47 |
| Msa0462590 | Msa0576240 | 0.818565 | 1.834265e-52 | -8.615850e-47 |
| Msa0467900 | Msa0576240 | -0.822676 | 2.085412e-53 | -8.615850e-47 |
| Msa0467960 | Msa0576240 | -0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0468160 | Msa0576240 | 0.820044 | 8.444512e-53 | -8.615850e-47 |
| Msa0475580 | Msa0576240 | 0.831655 | 1.476210e-55 | -8.615850e-47 |
| Msa0244270 | Msa0576240 | 0.816724 | 4.771267e-52 | -8.615850e-47 |
| Msa0258670 | Msa0576240 | -0.825574 | 4.352294e-54 | -8.615850e-47 |
| Msa0288330 | Msa0576240 | 0.809806 | 1.577507e-50 | -8.615850e-47 |
| Msa0318250 | Msa0576240 | 0.824969 | 6.049993e-54 | -8.615850e-47 |
| Msa0318270 | Msa0576240 | 0.815153 | 1.069488e-51 | -8.615850e-47 |
| Msa0318310 | Msa0576240 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
| Msa0339390 | Msa0576240 | 0.811423 | 7.051884e-51 | -8.615850e-47 |
| Msa0342340 | Msa0576240 | -0.837929 | 3.888107e-57 | -8.615850e-47 |
| Msa0358170 | Msa0576240 | 0.854099 | 1.541658e-61 | -8.615850e-47 |
| Msa0518040 | Msa0576240 | 0.805239 | 1.469510e-49 | -8.615850e-47 |
| Msa0519220 | Msa0576240 | 0.843884 | 1.064655e-58 | -8.615850e-47 |
| Msa0526640 | Msa0576240 | -0.815744 | 7.902231e-52 | -8.615850e-47 |
| Msa0540070 | Msa0576240 | 0.817417 | 3.334509e-52 | -8.615850e-47 |
| Msa0575850 | Msa0576240 | 0.970415 | 1.392395e-131 | -8.615850e-47 |
| Msa0576240 | Msa0579290 | 0.803302 | 3.719754e-49 | -8.615850e-47 |
| Msa0576240 | Msa0579390 | 0.807285 | 5.447177e-50 | -8.615850e-47 |
| Msa0576240 | Msa0582110 | 0.820083 | 8.273069e-53 | -8.615850e-47 |
| Msa0576240 | Msa0583740 | 0.813920 | 2.004877e-51 | -8.615850e-47 |
| Msa0576240 | Msa0585000 | -0.808789 | 2.605739e-50 | -8.615850e-47 |
| Msa0576240 | Msa0596100 | 0.810313 | 1.226408e-50 | -8.615850e-47 |
| Msa0576240 | Msa0624730 | 0.815002 | 1.155387e-51 | -8.615850e-47 |
| Msa0576240 | Msa0646640 | 0.811203 | 7.872346e-51 | -8.615850e-47 |
| Msa0576240 | Msa0672120 | 0.803959 | 2.717335e-49 | -8.615850e-47 |
| Msa0576240 | Msa0674220 | 0.800416 | 1.455898e-48 | -8.615850e-47 |
| Msa0576240 | Msa0705420 | 0.831082 | 2.041462e-55 | -8.615850e-47 |
| Msa0576240 | Msa0761800 | 0.808327 | 3.270581e-50 | -8.615850e-47 |
| Msa0576240 | Msa0804120 | 0.802405 | 5.697603e-49 | -8.615850e-47 |
| Msa0576240 | Msa0812990 | 0.815465 | 9.117737e-52 | -8.615850e-47 |
| Msa0576240 | Msa0828570 | 0.833522 | 5.080401e-56 | -8.615850e-47 |
| Msa0576240 | Msa0847200 | 0.804618 | 1.981594e-49 | -8.615850e-47 |
| Msa0576240 | Msa0853540 | 0.811788 | 5.876625e-51 | -8.615850e-47 |
| Msa0576240 | Msa0884450 | 0.814583 | 1.431059e-51 | -8.615850e-47 |
| Msa0576240 | Msa0929750 | 0.973817 | 4.474330e-137 | -8.615850e-47 |
| Msa0576240 | Msa0938420 | 0.810871 | 9.293062e-51 | -8.615850e-47 |
| Msa0576240 | Msa0949600 | 0.826398 | 2.773223e-54 | -8.615850e-47 |
| Msa0576240 | Msa1004900 | -0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0576240 | Msa1046610 | 0.801391 | 9.206118e-49 | -8.615850e-47 |
| Msa0576240 | Msa1058010 | 0.812544 | 4.020156e-51 | -8.615850e-47 |
| Msa0576240 | Msa1111630 | 0.857341 | 1.743286e-62 | -8.615850e-47 |
| Msa0576240 | Msa1113200 | 0.803648 | 3.152668e-49 | -8.615850e-47 |
| Msa0576240 | Msa1167170 | 0.847956 | 8.328823e-60 | -8.615850e-47 |
| Msa0576240 | Msa1177240 | 0.810728 | 9.979999e-51 | -8.615850e-47 |
| Msa0576240 | Msa1204980 | -0.835543 | 1.578825e-56 | -8.615850e-47 |
| Msa0576240 | Msa1205010 | -0.838643 | 2.545177e-57 | -8.615850e-47 |
| Msa0576240 | Msa1223460 | 0.803471 | 3.432196e-49 | -8.615850e-47 |
| Msa0576240 | Msa1252300 | 0.812448 | 4.218303e-51 | -8.615850e-47 |
| Msa0576240 | Msa1256540 | -0.829538 | 4.868687e-55 | -8.615850e-47 |
| Msa0576240 | Msa1296960 | -0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0576240 | Msa1313050 | 0.830127 | 3.498197e-55 | -8.615850e-47 |
| Msa0576240 | Msa1317030 | 0.803890 | 2.808918e-49 | -8.615850e-47 |
| Msa0576240 | Msa1335860 | 0.818167 | 2.257400e-52 | -8.615850e-47 |
| Msa0576240 | Msa1391490 | 0.826733 | 2.307154e-54 | -8.615850e-47 |
| Msa0576240 | Msa1395230 | -0.813341 | 2.688433e-51 | -8.615850e-47 |
| Msa0576240 | Msa1398800 | 0.830499 | 2.838026e-55 | -8.615850e-47 |
| Msa0576240 | Msa1427830 | 0.807021 | 6.196040e-50 | -8.615850e-47 |
| Msa0576240 | Msa1453620 | 0.843507 | 1.342612e-58 | -8.615850e-47 |
| Msa0576240 | Msa1456810 | 0.801919 | 7.174156e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576240 | MtrunA17_Chr8g0393121 | 97.773 | 494 | 10 | 1 | 1 | 493 | 1 | 494 | 0.0 | 999 |
| Msa0576240 | MtrunA17_Chr6g0478481 | 80.785 | 484 | 92 | 1 | 10 | 492 | 13 | 496 | 0.0 | 823 |
| Msa0576240 | MtrunA17_Chr3g0089671 | 31.707 | 164 | 103 | 4 | 277 | 431 | 86 | 249 | 1.25e-13 | 72.0 |
| Msa0576240 | MtrunA17_Chr4g0018381 | 27.966 | 118 | 83 | 1 | 284 | 399 | 75 | 192 | 9.35e-12 | 64.3 |
| Msa0576240 | MtrunA17_Chr1g0150551 | 29.565 | 115 | 79 | 1 | 287 | 399 | 130 | 244 | 2.55e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576240 | AT1G48600.2 | 71.805 | 493 | 135 | 2 | 1 | 492 | 1 | 490 | 0.0 | 753 |
| Msa0576240 | AT3G18000.1 | 71.694 | 484 | 136 | 1 | 10 | 492 | 7 | 490 | 0.0 | 753 |
| Msa0576240 | AT1G73600.2 | 70.994 | 493 | 140 | 2 | 3 | 492 | 11 | 503 | 0.0 | 751 |
| Msa0576240 | AT1G73600.1 | 71.400 | 493 | 136 | 2 | 1 | 492 | 1 | 489 | 0.0 | 750 |
| Msa0576240 | AT1G48600.1 | 72.363 | 474 | 130 | 1 | 20 | 492 | 1 | 474 | 0.0 | 734 |
| Msa0576240 | AT5G13710.1 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 2.02e-14 | 74.7 |
| Msa0576240 | AT5G13710.2 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 2.02e-14 | 74.7 |
| Msa0576240 | AT1G64970.1 | 28.846 | 104 | 72 | 1 | 289 | 390 | 130 | 233 | 2.56e-11 | 65.5 |
Find 134 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCAACATACACATTATT+AGG | 0.167772 | 4_1:+80298586 | None:intergenic |
| TAATGATTGTTCTCCTCATT+TGG | 0.252000 | 4_1:-80298491 | Msa0576240:three_prime_UTR |
| AGCACGGGAAATCACATTTA+TGG | 0.261865 | 4_1:+80299923 | None:intergenic |
| CAACTCTATCTAAGAACTTC+TGG | 0.266070 | 4_1:+80301133 | None:intergenic |
| TCCTTTGAGCTTTCTCTTGT+GGG | 0.273120 | 4_1:-80301352 | Msa0576240:CDS |
| ACAAACCTTTGTGTAAAATC+TGG | 0.284632 | 4_1:+80301878 | None:intergenic |
| GTGAACGAGGGGAGCAGAAG+TGG | 0.305672 | 4_1:-80298700 | Msa0576240:CDS |
| GTTGAACAATAAATGTGTTT+TGG | 0.315616 | 4_1:-80298571 | Msa0576240:three_prime_UTR |
| GATGGAAGGCGAAGCAGATC+AGG | 0.322790 | 4_1:-80298724 | Msa0576240:CDS |
| CCTTCAGAAACATCCATCTT+TGG | 0.322834 | 4_1:+80302668 | None:intergenic |
| GAATCCTGTTTCCACCAATC+TGG | 0.329775 | 4_1:-80301942 | Msa0576240:CDS |
| CACTGATGAAGTCGTCCTTC+TGG | 0.335719 | 4_1:+80298875 | None:intergenic |
| CTTGTCGAGATCAGAAGCTT+TGG | 0.356843 | 4_1:+80303703 | None:intergenic |
| TGGTGCAGATTTGCTGGATA+TGG | 0.363415 | 4_1:-80301188 | Msa0576240:intron |
| AGGTTAGATCACATGATGAT+AGG | 0.371337 | 4_1:-80301161 | Msa0576240:CDS |
| TGGAAGATTTACCGGAGAAT+TGG | 0.371460 | 4_1:-80302931 | Msa0576240:CDS |
| GCCGGTATTGGAAGATTTAC+CGG | 0.377974 | 4_1:-80302939 | Msa0576240:CDS |
| TTCCTTCATATTCTGGTAGC+AGG | 0.383460 | 4_1:+80302982 | None:intergenic |
| GCTGAAAGCTGGTCAATTGC+TGG | 0.390425 | 4_1:-80302907 | Msa0576240:CDS |
| ATCCCCAGATTGGTGGAAAC+AGG | 0.392051 | 4_1:+80301938 | None:intergenic |
| CTGTAGAACGAAAGCATTAA+CGG | 0.397285 | 4_1:-80302734 | Msa0576240:intron |
| TTCCTTTGAGCTTTCTCTTG+TGG | 0.410639 | 4_1:-80301353 | Msa0576240:CDS |
| TGTTGAGGATCGAACTGATC+AGG | 0.414212 | 4_1:-80299033 | Msa0576240:intron |
| TTTATTAGCACTGGAGGACT+TGG | 0.419528 | 4_1:-80301060 | Msa0576240:intron |
| ATTGAGCTTGGAGCCGGTAT+TGG | 0.420522 | 4_1:-80302951 | Msa0576240:CDS |
| GGAAAATCAGTTATTGAGCT+TGG | 0.426730 | 4_1:-80302963 | Msa0576240:CDS |
| ATAAAGAGAGGTAAAGGAAA+GGG | 0.428954 | 4_1:+80298373 | None:intergenic |
| TTACGATATGAGCGCGTGTA+TGG | 0.432033 | 4_1:-80301090 | Msa0576240:CDS |
| GCTTGTATTCTTTCATGTCA+TGG | 0.435700 | 4_1:+80299192 | None:intergenic |
| CTGGATGTTGGTTGTGGTGT+TGG | 0.442233 | 4_1:-80300005 | Msa0576240:CDS |
| GGTTAGATCACATGATGATA+GGG | 0.442687 | 4_1:-80301160 | Msa0576240:CDS |
| AAAGAAATAAAGAGAGGTAA+AGG | 0.442777 | 4_1:+80298367 | None:intergenic |
| GTGAAATTCAGAAATCATAC+TGG | 0.443496 | 4_1:-80303772 | Msa0576240:CDS |
| GTTGGTTGTGGTGTTGGCGG+AGG | 0.443753 | 4_1:-80299999 | Msa0576240:CDS |
| TTCTCTTTGAATCCCCAGAT+TGG | 0.446538 | 4_1:+80301928 | None:intergenic |
| TGCCATATGAGTGATATCTC+TGG | 0.446888 | 4_1:-80301379 | Msa0576240:CDS |
| GGCCAAGGCTTTATTAGCAC+TGG | 0.447921 | 4_1:-80301069 | Msa0576240:CDS |
| CGATTCAAATCCTTACTAGT+TGG | 0.448131 | 4_1:+80298411 | None:intergenic |
| CTGCAGATGCTGGAGAATGC+TGG | 0.456311 | 4_1:-80299068 | Msa0576240:intron |
| AATCCTGTTTCCACCAATCT+GGG | 0.456764 | 4_1:-80301941 | Msa0576240:CDS |
| TCCCAGAGATATCACTCATA+TGG | 0.459147 | 4_1:+80301377 | None:intergenic |
| CAAACCTTTGTGTAAAATCT+GGG | 0.462103 | 4_1:+80301879 | None:intergenic |
| AGCTTTCAGCGCCAATTCTC+CGG | 0.462761 | 4_1:+80302920 | None:intergenic |
| CATTCTTCCATGGCTTCACC+AGG | 0.473107 | 4_1:-80303898 | Msa0576240:intron |
| GGAGAATTGGCGCTGAAAGC+TGG | 0.475774 | 4_1:-80302918 | Msa0576240:CDS |
| ATTGGTGGAAACAGGATTCT+CGG | 0.477277 | 4_1:+80301946 | None:intergenic |
| TGAACGAGGGGAGCAGAAGT+GGG | 0.479207 | 4_1:-80298699 | Msa0576240:CDS |
| AGCTGGTCAATTGCTGGCTG+TGG | 0.479823 | 4_1:-80302901 | Msa0576240:CDS |
| ACGAGTGTAGATTACATCAT+AGG | 0.479962 | 4_1:+80299821 | None:intergenic |
| CGTGCTATTGAACGTGCTAT+CGG | 0.481806 | 4_1:-80299906 | Msa0576240:CDS |
| GTAATTAGAAGTTGACCTCC+AGG | 0.482434 | 4_1:+80299287 | None:intergenic |
| ATTACAATCCTACTCACTAC+AGG | 0.482810 | 4_1:-80301905 | Msa0576240:CDS |
| GTTTGTGAAAACACTGCAGC+AGG | 0.484254 | 4_1:-80298917 | Msa0576240:CDS |
| TAAAATGATCTAAATAATGT+TGG | 0.485432 | 4_1:+80299323 | None:intergenic |
| CTTGTGGGCTGTAAATGCAT+TGG | 0.492972 | 4_1:-80301337 | Msa0576240:CDS |
| AAAGCCTGGTCAGAAAGTAC+TGG | 0.495881 | 4_1:-80300024 | Msa0576240:CDS |
| AAAGGAACTTGTAGCTAAGC+TGG | 0.495920 | 4_1:-80300051 | Msa0576240:CDS |
| CTCCAGTGCTAATAAAGCCT+TGG | 0.496405 | 4_1:+80301067 | None:intergenic |
| GCGAGACCTTGAGAAACTCC+TGG | 0.497412 | 4_1:+80303974 | None:intergenic |
| TCCGGTAAATCTTCCAATAC+CGG | 0.497820 | 4_1:+80302938 | None:intergenic |
| TCTTTGAATCCCCAGATTGG+TGG | 0.498788 | 4_1:+80301931 | None:intergenic |
| ATTACATCATAGGTCTTCTC+AGG | 0.499504 | 4_1:+80299831 | None:intergenic |
| TATTCAGCAAATTCTGAAGA+TGG | 0.499970 | 4_1:+80299239 | None:intergenic |
| GAGCTTCTAACCGTAGATCC+AGG | 0.511213 | 4_1:-80303992 | Msa0576240:five_prime_UTR |
| CCTTACTTTGATGTATAGCA+TGG | 0.513489 | 4_1:+80299794 | None:intergenic |
| GATGTTGGTTGTGGTGTTGG+CGG | 0.516899 | 4_1:-80300002 | Msa0576240:CDS |
| TCAGTTATTGAGCTTGGAGC+CGG | 0.519308 | 4_1:-80302957 | Msa0576240:CDS |
| AATAAAGAGAGGTAAAGGAA+AGG | 0.519582 | 4_1:+80298372 | None:intergenic |
| ACTGATTACTGCAAAAGTGC+TGG | 0.520458 | 4_1:-80299266 | Msa0576240:CDS |
| ACAATGAAATTGTGGAGAGA+TGG | 0.523489 | 4_1:-80298742 | Msa0576240:CDS |
| ATTCGCATTTCATTCTTCCA+TGG | 0.523985 | 4_1:-80303908 | Msa0576240:exon |
| AGAATTTGCTGAATACATCA+AGG | 0.524867 | 4_1:-80299231 | Msa0576240:CDS |
| GATTTGCTGGATATGGCAAA+AGG | 0.528860 | 4_1:-80301181 | Msa0576240:CDS |
| GATGTATCTTTCAGATAATG+AGG | 0.530422 | 4_1:-80302612 | Msa0576240:intron |
| TTGAGAAACTCCTGGATCTA+CGG | 0.530800 | 4_1:+80303982 | None:intergenic |
| ATAATAGCAAGAACTGCAGC+AGG | 0.534274 | 4_1:+80298634 | None:intergenic |
| CATTGAGAGTGCAATAAAGA+AGG | 0.534730 | 4_1:-80302874 | Msa0576240:intron |
| TCCTTCATATTCTGGTAGCA+GGG | 0.535206 | 4_1:+80302983 | None:intergenic |
| GCCATATGAGTGATATCTCT+GGG | 0.536166 | 4_1:-80301378 | Msa0576240:CDS |
| CATAATACCTGGTGAAGCCA+TGG | 0.538535 | 4_1:+80303891 | None:intergenic |
| TGATGTCACCTCTCCAAAGA+TGG | 0.540164 | 4_1:-80302681 | Msa0576240:CDS |
| TCTTCTCAAAGATCCAAATG+AGG | 0.542001 | 4_1:+80298478 | None:intergenic |
| AAGCAGATCAGGGGTGAACG+AGG | 0.552850 | 4_1:-80298713 | Msa0576240:CDS |
| TGTGAAGAGGTAGGCAGGCA+AGG | 0.555974 | 4_1:-80304066 | Msa0576240:five_prime_UTR |
| ATGGAAGGCGAAGCAGATCA+GGG | 0.557359 | 4_1:-80298723 | Msa0576240:CDS |
| TATGAGCGCGTGTATGGCCA+AGG | 0.560692 | 4_1:-80301084 | Msa0576240:CDS |
| GCTAAGCTGGAACTAAAGCC+TGG | 0.561514 | 4_1:-80300038 | Msa0576240:CDS |
| TGGCGGAGGTGATTTCTACA+TGG | 0.570395 | 4_1:-80299985 | Msa0576240:CDS |
| CCAAAGATGGATGTTTCTGA+AGG | 0.571313 | 4_1:-80302668 | Msa0576240:CDS |
| ATGAAATGGTTGAAAGATGG+TGG | 0.574449 | 4_1:-80301981 | Msa0576240:CDS |
| AGGAGATGGAAAACAAGATG+AGG | 0.575162 | 4_1:+80298444 | None:intergenic |
| ATTCTAAAAGAAATAAAGAG+AGG | 0.578364 | 4_1:+80298361 | None:intergenic |
| GTAGATTGTGTGGTGTGAAG+AGG | 0.585625 | 4_1:-80304079 | Msa0576240:five_prime_UTR |
| CTGGGTTCCCTGTAGTGAGT+AGG | 0.586374 | 4_1:+80301897 | None:intergenic |
| TAGGAAAACTACTTTCACAC+TGG | 0.587206 | 4_1:+80298605 | None:intergenic |
| TGGATTTGATGTCATTGTTG+AGG | 0.596748 | 4_1:-80299048 | Msa0576240:CDS |
| GATAGCACGTTCAATAGCAC+GGG | 0.597140 | 4_1:+80299908 | None:intergenic |
| GGAGATGGAAAACAAGATGA+GGG | 0.598192 | 4_1:+80298445 | None:intergenic |
| ATGATGAAATGGTTGAAAGA+TGG | 0.599340 | 4_1:-80301984 | Msa0576240:CDS |
| ACATCCAGTACTTTCTGACC+AGG | 0.599476 | 4_1:+80300020 | None:intergenic |
| GAACGAGGGGAGCAGAAGTG+GGG | 0.600599 | 4_1:-80298698 | Msa0576240:CDS |
| GGATGACTACAATGAAATTG+TGG | 0.600685 | 4_1:-80298750 | Msa0576240:CDS |
| CGATAGCACGTTCAATAGCA+CGG | 0.601134 | 4_1:+80299907 | None:intergenic |
| TGTGGTGTGAAGAGGTAGGC+AGG | 0.601652 | 4_1:-80304071 | Msa0576240:five_prime_UTR |
| ATTGTGTGGTGTGAAGAGGT+AGG | 0.602199 | 4_1:-80304075 | Msa0576240:five_prime_UTR |
| ATTAAGTGCCTTCGATAGCG+AGG | 0.603456 | 4_1:+80303952 | None:intergenic |
| AGGTCTCGCCTCGCTATCGA+AGG | 0.605259 | 4_1:-80303960 | Msa0576240:five_prime_UTR |
| AGAAACATCCATCTTTGGAG+AGG | 0.608120 | 4_1:+80302673 | None:intergenic |
| GCAGATCAGGGGTGAACGAG+GGG | 0.609433 | 4_1:-80298711 | Msa0576240:CDS |
| TTTGCTGAATACATCAAGGA+AGG | 0.610174 | 4_1:-80299227 | Msa0576240:CDS |
| AGCAGATCAGGGGTGAACGA+GGG | 0.610403 | 4_1:-80298712 | Msa0576240:CDS |
| CAAGGCTTTATTAGCACTGG+AGG | 0.615635 | 4_1:-80301066 | Msa0576240:CDS |
| CAAAGCTTCTGATCTCGACA+AGG | 0.622617 | 4_1:-80303702 | Msa0576240:CDS |
| AAATAAGAAGAATCAAAACC+AGG | 0.627133 | 4_1:-80301302 | Msa0576240:intron |
| GGTCAGAAAGTACTGGATGT+TGG | 0.630821 | 4_1:-80300017 | Msa0576240:CDS |
| ATCCTGTTTCCACCAATCTG+GGG | 0.633940 | 4_1:-80301940 | Msa0576240:CDS |
| TGAAATTGTGGAGAGATGGA+AGG | 0.635643 | 4_1:-80298738 | Msa0576240:CDS |
| GTTAGATCACATGATGATAG+GGG | 0.637701 | 4_1:-80301159 | Msa0576240:CDS |
| TTGTGCTGATCTCTCTGTCG+AGG | 0.638294 | 4_1:-80303741 | Msa0576240:CDS |
| TGACATGAAAGAATACAAGC+AGG | 0.639443 | 4_1:-80299189 | Msa0576240:intron |
| TACAAGTGGTTGAAACCTGG+AGG | 0.640796 | 4_1:-80299302 | Msa0576240:CDS |
| AATTGCTCTCGAGAGCCAGA+AGG | 0.643480 | 4_1:-80298890 | Msa0576240:CDS |
| GTAGATCCAGGAGTTTCTCA+AGG | 0.643884 | 4_1:-80303980 | Msa0576240:five_prime_UTR |
| AAAGTACTGGATGTTGGTTG+TGG | 0.647499 | 4_1:-80300011 | Msa0576240:CDS |
| TCCCTGCTACCAGAATATGA+AGG | 0.647755 | 4_1:-80302984 | Msa0576240:CDS |
| GCTGAATACATCAAGGAAGG+AGG | 0.652193 | 4_1:-80299224 | Msa0576240:CDS |
| GCCCACAAGAGAAAGCTCAA+AGG | 0.655286 | 4_1:+80301351 | None:intergenic |
| ATAAATGAAGGTAGATTGTG+TGG | 0.656478 | 4_1:-80304089 | None:intergenic |
| TTCTTGGGCAGAAACGACAA+AGG | 0.658742 | 4_1:-80300069 | Msa0576240:intron |
| TTACAATCCTACTCACTACA+GGG | 0.660434 | 4_1:-80301904 | Msa0576240:CDS |
| GGGAAATCACATTTATGGAG+AGG | 0.665644 | 4_1:+80299928 | None:intergenic |
| TGGAAGGCGAAGCAGATCAG+GGG | 0.665972 | 4_1:-80298722 | Msa0576240:CDS |
| GATCGATTAATGCAGCAGAG+AGG | 0.711666 | 4_1:-80304017 | Msa0576240:five_prime_UTR |
| CGACAAGGAAGAAAGACCTG+AGG | 0.732813 | 4_1:-80303687 | Msa0576240:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATTATTTTCATTTTAT+AGG | - | chr4_1:80298902-80298921 | Msa0576240:CDS | 10.0% |
| !!! | AGAATTATTTTCATTTTATA+GGG | - | chr4_1:80298903-80298922 | Msa0576240:CDS | 10.0% |
| !!! | ATTATCATTACATTTTATTT+TGG | - | chr4_1:80301632-80301651 | Msa0576240:intron | 10.0% |
| !!! | AAATTTTAAAACATATTGAT+TGG | - | chr4_1:80301893-80301912 | Msa0576240:CDS | 10.0% |
| !! | TAAATTAAAACCAAATGAAT+CGG | + | chr4_1:80299044-80299063 | None:intergenic | 15.0% |
| !! | AAAACAAAATGAAATGAAAA+AGG | + | chr4_1:80299323-80299342 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTCTTTTCAATT+CGG | - | chr4_1:80299858-80299877 | Msa0576240:CDS | 15.0% |
| !! | GTAAATAAAAAAATCAACTT+TGG | - | chr4_1:80299961-80299980 | Msa0576240:CDS | 15.0% |
| !!! | TTTTGTTTAATCTCAATTAT+TGG | - | chr4_1:80300112-80300131 | Msa0576240:intron | 15.0% |
| !! | TTTGTTTAATCTCAATTATT+GGG | - | chr4_1:80300113-80300132 | Msa0576240:intron | 15.0% |
| !!! | TTTTTAATCAAACAATAATC+TGG | + | chr4_1:80300582-80300601 | None:intergenic | 15.0% |
| !! | TAAAATGATCTAAATAATGT+TGG | + | chr4_1:80303082-80303101 | None:intergenic | 15.0% |
| !!! | CTTTTGTAATACTTTATTTT+AGG | - | chr4_1:80303590-80303609 | Msa0576240:intron | 15.0% |
| !!! | AATCAAAGCTTTTAAATTAA+GGG | + | chr4_1:80303625-80303644 | None:intergenic | 15.0% |
| !! | TCATTATTATTACGACATTA+AGG | + | chr4_1:80298569-80298588 | None:intergenic | 20.0% |
| !! | AAAATAATTCTTAACATCCA+CGG | + | chr4_1:80298894-80298913 | None:intergenic | 20.0% |
| !!! | ATTTTGATTAGACTATGAAT+TGG | + | chr4_1:80299190-80299209 | None:intergenic | 20.0% |
| !!! | ATAATTTTACTCAAACAAAC+TGG | - | chr4_1:80299242-80299261 | Msa0576240:CDS | 20.0% |
| !!! | CAAATTTTATGGAAATATGT+GGG | + | chr4_1:80299280-80299299 | None:intergenic | 20.0% |
| !! | TTAACATGTTCTTAAATTCA+CGG | + | chr4_1:80300025-80300044 | None:intergenic | 20.0% |
| !! | ACTAGAATAATTATTTGCAA+TGG | + | chr4_1:80300081-80300100 | None:intergenic | 20.0% |
| !! | TTGTTTAATCTCAATTATTG+GGG | - | chr4_1:80300114-80300133 | Msa0576240:intron | 20.0% |
| !!! | AGCTGTTTTATTTAATCAAA+AGG | + | chr4_1:80300665-80300684 | None:intergenic | 20.0% |
| !!! | TCATTGGATTATATTTTGTA+AGG | - | chr4_1:80300889-80300908 | Msa0576240:intron | 20.0% |
| !!! | TGTGTACAATAATATTTTCA+TGG | - | chr4_1:80301194-80301213 | Msa0576240:intron | 20.0% |
| !! | AATGAAAAGGTAGAAAATAT+TGG | + | chr4_1:80301581-80301600 | None:intergenic | 20.0% |
| !! | AATTATTATGTAATTGTACC+TGG | - | chr4_1:80301755-80301774 | Msa0576240:intron | 20.0% |
| !!! | TCATATAATTTTTTAGAGCA+TGG | - | chr4_1:80302072-80302091 | Msa0576240:intron | 20.0% |
| !! | AAAAAAGAAAAAACCAAGTA+TGG | + | chr4_1:80302228-80302247 | None:intergenic | 20.0% |
| !! | AATAACATTTACGAGTAATA+AGG | + | chr4_1:80302823-80302842 | None:intergenic | 20.0% |
| !!! | ATTTTGATCAATCATTTTGT+TGG | - | chr4_1:80302922-80302941 | Msa0576240:CDS | 20.0% |
| !!! | TATTTAGATCATTTTACAAG+TGG | - | chr4_1:80303086-80303105 | Msa0576240:intron | 20.0% |
| !!! | CAATCAAAGCTTTTAAATTA+AGG | + | chr4_1:80303626-80303645 | None:intergenic | 20.0% |
| !!! | ATTCTAAAAGAAATAAAGAG+AGG | + | chr4_1:80304044-80304063 | None:intergenic | 20.0% |
| ! | ATTAAGAAATGTGAAAGATG+AGG | + | chr4_1:80298748-80298767 | None:intergenic | 25.0% |
| ! | AGCTTAAGATGATAATATGA+TGG | + | chr4_1:80298840-80298859 | None:intergenic | 25.0% |
| ! | AAATAATTCTTAACATCCAC+GGG | + | chr4_1:80298893-80298912 | None:intergenic | 25.0% |
| ! | GGTATGATATATCAGATTAA+TGG | + | chr4_1:80299002-80299021 | None:intergenic | 25.0% |
| ! | GATATTGCAAAGAGAAAATT+AGG | + | chr4_1:80299136-80299155 | None:intergenic | 25.0% |
| !! | GCAAATTTTATGGAAATATG+TGG | + | chr4_1:80299281-80299300 | None:intergenic | 25.0% |
| ! | AACAATAACAATTCTCAGAA+TGG | + | chr4_1:80299570-80299589 | None:intergenic | 25.0% |
| !! | TTGATGTGATTTTCTCAAAT+TGG | - | chr4_1:80299762-80299781 | Msa0576240:intron | 25.0% |
| ! | TTGTACTAAATAGCATATTG+CGG | - | chr4_1:80300244-80300263 | Msa0576240:intron | 25.0% |
| ! | CAAATTATAAGTGTATAGTG+TGG | + | chr4_1:80300296-80300315 | None:intergenic | 25.0% |
| ! | CACACTATACACTTATAATT+TGG | - | chr4_1:80300294-80300313 | Msa0576240:intron | 25.0% |
| ! | TTAACAAAACATGACTTAGT+TGG | - | chr4_1:80300333-80300352 | Msa0576240:intron | 25.0% |
| ! | TAGCAAAAAGAATGATGAAA+TGG | - | chr4_1:80300407-80300426 | Msa0576240:intron | 25.0% |
| ! | AAAAAGATTGACATCAACTT+TGG | - | chr4_1:80300599-80300618 | Msa0576240:intron | 25.0% |
| ! | AAAAGATTGACATCAACTTT+GGG | - | chr4_1:80300600-80300619 | Msa0576240:intron | 25.0% |
| ! | AGTGTATGATTTCTATCTTA+TGG | - | chr4_1:80300631-80300650 | Msa0576240:intron | 25.0% |
| ! | ACATGTTTGAACCTAATTAA+CGG | - | chr4_1:80300690-80300709 | Msa0576240:intron | 25.0% |
| ! | AAATAAGAAGAATCAAAACC+AGG | - | chr4_1:80301100-80301119 | Msa0576240:CDS | 25.0% |
| !! | TCTAACATGTTAATTTGAAG+CGG | + | chr4_1:80301391-80301410 | None:intergenic | 25.0% |
| !! | TTTTCTACCTTTTCATTCTT+TGG | - | chr4_1:80301584-80301603 | Msa0576240:intron | 25.0% |
| ! | TAAGAGGAAGAATAATCAAA+TGG | + | chr4_1:80301699-80301718 | None:intergenic | 25.0% |
| ! | CATTACACGATAATTATAAG+AGG | + | chr4_1:80301715-80301734 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTTCAAGCTAT+TGG | - | chr4_1:80301852-80301871 | Msa0576240:intron | 25.0% |
| ! | CACAAACAAATATATCCATT+TGG | - | chr4_1:80302105-80302124 | Msa0576240:intron | 25.0% |
| ! | TTATGAGTTGCTTAATTCTT+GGG | - | chr4_1:80302318-80302337 | Msa0576240:intron | 25.0% |
| !!! | CTTCTCAGGATATATTTTTT+TGG | + | chr4_1:80302560-80302579 | None:intergenic | 25.0% |
| ! | TAAAAGAATACCTAAACTCT+AGG | - | chr4_1:80302769-80302788 | Msa0576240:intron | 25.0% |
| !! | TCGTAAATGTTATTCCTTTT+CGG | - | chr4_1:80302829-80302848 | Msa0576240:intron | 25.0% |
| ! | TTGCAAGCAAATTAAACTAT+TGG | - | chr4_1:80302861-80302880 | Msa0576240:intron | 25.0% |
| ! | TACAAAGTACAGACATAAAA+AGG | + | chr4_1:80302959-80302978 | None:intergenic | 25.0% |
| !! | AATAACTTCATTGTTACTTG+TGG | - | chr4_1:80303456-80303475 | Msa0576240:intron | 25.0% |
| !!! | TAAAAGCTTTGATTGTTTTC+AGG | - | chr4_1:80303631-80303650 | Msa0576240:intron | 25.0% |
| !! | ATAAGCGAATCATATTTTCT+TGG | + | chr4_1:80303741-80303760 | None:intergenic | 25.0% |
| ! | TGTTCAACATACACATTATT+AGG | + | chr4_1:80303819-80303838 | None:intergenic | 25.0% |
| !! | GTTGAACAATAAATGTGTTT+TGG | - | chr4_1:80303831-80303850 | Msa0576240:intron | 25.0% |
| !! | GACATTTTTGTTAAGTTTGT+TGG | - | chr4_1:80303888-80303907 | Msa0576240:intron | 25.0% |
| ! | AAAGAAATAAAGAGAGGTAA+AGG | + | chr4_1:80304038-80304057 | None:intergenic | 25.0% |
| GTGAAATTCAGAAATCATAC+TGG | - | chr4_1:80298630-80298649 | Msa0576240:three_prime_UTR | 30.0% | |
| ! | TGATAATATGATGGTGCAAT+TGG | + | chr4_1:80298831-80298850 | None:intergenic | 30.0% |
| TAAGTGTGGAAGTTTGAAAA+CGG | + | chr4_1:80299102-80299121 | None:intergenic | 30.0% | |
| AAACTTCCACACTTATACTT+TGG | - | chr4_1:80299107-80299126 | Msa0576240:intron | 30.0% | |
| TTCTCTTTGCAATATCAACA+AGG | - | chr4_1:80299140-80299159 | Msa0576240:intron | 30.0% | |
| GATTAGACTATGAATTGGAT+TGG | + | chr4_1:80299185-80299204 | None:intergenic | 30.0% | |
| ! | ACATTGACAGGCAAATTTTA+TGG | + | chr4_1:80299291-80299310 | None:intergenic | 30.0% |
| ATGAATACAAAAGCAATGTC+TGG | + | chr4_1:80299365-80299384 | None:intergenic | 30.0% | |
| !! | ACTGATTTTCCTTCATATTC+TGG | + | chr4_1:80299430-80299449 | None:intergenic | 30.0% |
| GATGTATCTTTCAGATAATG+AGG | - | chr4_1:80299790-80299809 | Msa0576240:intron | 30.0% | |
| ATGTATGATTGTATGAACTG+TGG | - | chr4_1:80299900-80299919 | Msa0576240:CDS | 30.0% | |
| TTAAGTTACTAAGCAAAGCA+TGG | - | chr4_1:80300041-80300060 | Msa0576240:CDS | 30.0% | |
| ATTATAAGTGTATAGTGTGG+CGG | + | chr4_1:80300293-80300312 | None:intergenic | 30.0% | |
| ATGATGAAATGGTTGAAAGA+TGG | - | chr4_1:80300418-80300437 | Msa0576240:intron | 30.0% | |
| CAAACCTTTGTGTAAAATCT+GGG | + | chr4_1:80300526-80300545 | None:intergenic | 30.0% | |
| ACAAACCTTTGTGTAAAATC+TGG | + | chr4_1:80300527-80300546 | None:intergenic | 30.0% | |
| CATGTTTGAACCTAATTAAC+GGG | - | chr4_1:80300691-80300710 | Msa0576240:intron | 30.0% | |
| !!! | GGTTGCTTTTCCAAATTTTA+CGG | - | chr4_1:80300751-80300770 | Msa0576240:intron | 30.0% |
| ! | GTAAGGCAAATAATACCTTT+TGG | - | chr4_1:80300906-80300925 | Msa0576240:intron | 30.0% |
| !! | GCAAATAATACCTTTTGGTT+TGG | - | chr4_1:80300911-80300930 | Msa0576240:intron | 30.0% |
| ATCAAAGTTACCAAACCAAA+AGG | + | chr4_1:80300924-80300943 | None:intergenic | 30.0% | |
| ! | ATAATAATACCCTGTTGGTT+TGG | - | chr4_1:80300954-80300973 | Msa0576240:intron | 30.0% |
| TTAAATACCTGCATGAACAA+AGG | + | chr4_1:80300999-80301018 | None:intergenic | 30.0% | |
| !!! | TTTAATCCTGCTTTTTTACC+TGG | + | chr4_1:80301121-80301140 | None:intergenic | 30.0% |
| ACATGTATACATCAGTCAAT+TGG | + | chr4_1:80301177-80301196 | None:intergenic | 30.0% | |
| ! | TCTAGTAATTACAAGGTGTT+AGG | - | chr4_1:80301463-80301482 | Msa0576240:intron | 30.0% |
| ATTTCAAGATACGATCCAAA+TGG | + | chr4_1:80302123-80302142 | None:intergenic | 30.0% | |
| CTATATTAAGTGATAAGCAG+CGG | + | chr4_1:80302161-80302180 | None:intergenic | 30.0% | |
| AAAAGAACTTAACCTTGATC+AGG | + | chr4_1:80302270-80302289 | None:intergenic | 30.0% | |
| CTTATGAGTTGCTTAATTCT+TGG | - | chr4_1:80302317-80302336 | Msa0576240:intron | 30.0% | |
| !! | AATTTTGATGTTGAGGTTGT+TGG | - | chr4_1:80302445-80302464 | Msa0576240:intron | 30.0% |
| AACATTTACGAGTAATAAGG+TGG | + | chr4_1:80302820-80302839 | None:intergenic | 30.0% | |
| ! | AATTAAACTATTGGTCTCGT+TGG | - | chr4_1:80302870-80302889 | Msa0576240:intron | 30.0% |
| CTCTCAATTAAGAAGAATTC+TGG | - | chr4_1:80302893-80302912 | Msa0576240:CDS | 30.0% | |
| !! | TCAATCATTTTGTTGGCTAA+AGG | - | chr4_1:80302929-80302948 | Msa0576240:CDS | 30.0% |
| !! | CAATCATTTTGTTGGCTAAA+GGG | - | chr4_1:80302930-80302949 | Msa0576240:CDS | 30.0% |
| ! | TATTCAGCAAATTCTGAAGA+TGG | + | chr4_1:80303166-80303185 | None:intergenic | 30.0% |
| !! | AGAATTTGCTGAATACATCA+AGG | - | chr4_1:80303171-80303190 | Msa0576240:intron | 30.0% |
| AAAGAGAGTAAGACAACAAA+CGG | + | chr4_1:80303240-80303259 | None:intergenic | 30.0% | |
| TAATGATTGTTCTCCTCATT+TGG | - | chr4_1:80303911-80303930 | Msa0576240:exon | 30.0% | |
| !!! | TACTAGTTGGTTTTTCAACA+AGG | + | chr4_1:80303981-80304000 | None:intergenic | 30.0% |
| TGTTGAAAAACCAACTAGTA+AGG | - | chr4_1:80303981-80304000 | Msa0576240:five_prime_UTR | 30.0% | |
| ATAAAGAGAGGTAAAGGAAA+GGG | + | chr4_1:80304032-80304051 | None:intergenic | 30.0% | |
| AATAAAGAGAGGTAAAGGAA+AGG | + | chr4_1:80304033-80304052 | None:intergenic | 30.0% | |
| ATTCGCATTTCATTCTTCCA+TGG | - | chr4_1:80298494-80298513 | Msa0576240:three_prime_UTR | 35.0% | |
| ! | GATTCGCATTTCAATTTTGC+AGG | - | chr4_1:80298587-80298606 | Msa0576240:three_prime_UTR | 35.0% |
| AAATGTGAAAGATGAGGAGA+CGG | + | chr4_1:80298742-80298761 | None:intergenic | 35.0% | |
| CAAATGAATCGGCTACTAAA+TGG | + | chr4_1:80299033-80299052 | None:intergenic | 35.0% | |
| ! | CATTTAGTAGCCGATTCATT+TGG | - | chr4_1:80299031-80299050 | Msa0576240:intron | 35.0% |
| AAGTGTGGAAGTTTGAAAAC+GGG | + | chr4_1:80299101-80299120 | None:intergenic | 35.0% | |
| !! | GAATTGGATTGGTGCATTAT+TGG | + | chr4_1:80299174-80299193 | None:intergenic | 35.0% |
| GGAAAATCAGTTATTGAGCT+TGG | - | chr4_1:80299439-80299458 | Msa0576240:intron | 35.0% | |
| ! | CATTGAGAGTGCAATAAAGA+AGG | - | chr4_1:80299528-80299547 | Msa0576240:intron | 35.0% |
| !! | CTGTAGAACGAAAGCATTAA+CGG | - | chr4_1:80299668-80299687 | Msa0576240:intron | 35.0% |
| TTACTGTCAGTTGGAATCAT+GGG | + | chr4_1:80299934-80299953 | None:intergenic | 35.0% | |
| TTTACTGTCAGTTGGAATCA+TGG | + | chr4_1:80299935-80299954 | None:intergenic | 35.0% | |
| TATCTTCTATCAGTGCTTTG+TGG | - | chr4_1:80299996-80300015 | Msa0576240:CDS | 35.0% | |
| TTTCCCAATGCTGTTAAACA+CGG | - | chr4_1:80300151-80300170 | Msa0576240:intron | 35.0% | |
| !!! | CTAACCTTTTGTTTTTCCCT+TGG | - | chr4_1:80300366-80300385 | Msa0576240:intron | 35.0% |
| ATGAAATGGTTGAAAGATGG+TGG | - | chr4_1:80300421-80300440 | Msa0576240:intron | 35.0% | |
| ATTACAATCCTACTCACTAC+AGG | - | chr4_1:80300497-80300516 | Msa0576240:intron | 35.0% | |
| TTACAATCCTACTCACTACA+GGG | - | chr4_1:80300498-80300517 | Msa0576240:intron | 35.0% | |
| TTGTAGTTATCTCTATCCCT+TGG | - | chr4_1:80300550-80300569 | Msa0576240:intron | 35.0% | |
| ACAAAACACTCCCGTTAATT+AGG | + | chr4_1:80300704-80300723 | None:intergenic | 35.0% | |
| ! | TGTTTTGTGATGGTAAAGGT+GGG | - | chr4_1:80300716-80300735 | Msa0576240:intron | 35.0% |
| ! | GCTTTTCCAAATTTTACGGT+TGG | - | chr4_1:80300755-80300774 | Msa0576240:intron | 35.0% |
| AGTTAATGTTGAGCACTCAT+TGG | - | chr4_1:80300873-80300892 | Msa0576240:intron | 35.0% | |
| ! | GTTTGGTAACTTTGATCTGT+AGG | - | chr4_1:80300928-80300947 | Msa0576240:intron | 35.0% |
| GGCAAATAATAATACCCTGT+TGG | - | chr4_1:80300949-80300968 | Msa0576240:intron | 35.0% | |
| TTGAAGTTACCAAACCAACA+GGG | + | chr4_1:80300966-80300985 | None:intergenic | 35.0% | |
| ATTGAAGTTACCAAACCAAC+AGG | + | chr4_1:80300967-80300986 | None:intergenic | 35.0% | |
| TCAAAACCAGGTAAAAAAGC+AGG | - | chr4_1:80301112-80301131 | Msa0576240:CDS | 35.0% | |
| AGGTTAGATCACATGATGAT+AGG | - | chr4_1:80301241-80301260 | Msa0576240:intron | 35.0% | |
| GGTTAGATCACATGATGATA+GGG | - | chr4_1:80301242-80301261 | Msa0576240:intron | 35.0% | |
| GTTAGATCACATGATGATAG+GGG | - | chr4_1:80301243-80301262 | Msa0576240:intron | 35.0% | |
| CAACTCTATCTAAGAACTTC+TGG | + | chr4_1:80301272-80301291 | None:intergenic | 35.0% | |
| GCGGAGAAAGGAAAATATAA+AGG | + | chr4_1:80301372-80301391 | None:intergenic | 35.0% | |
| ! | TGTTAATTTGAAGCGGAGAA+AGG | + | chr4_1:80301384-80301403 | None:intergenic | 35.0% |
| TACCTGGTCTAGTAATTACA+AGG | - | chr4_1:80301456-80301475 | Msa0576240:intron | 35.0% | |
| !!! | ACTGCTGTGTTTTTAGGTAA+GGG | + | chr4_1:80301495-80301514 | None:intergenic | 35.0% |
| !! | CTTTTCATTCTTTGGTGACT+GGG | - | chr4_1:80301592-80301611 | Msa0576240:intron | 35.0% |
| !! | TTTTCATTCTTTGGTGACTG+GGG | - | chr4_1:80301593-80301612 | Msa0576240:intron | 35.0% |
| ATACTTCAATACTAGCAACC+AGG | + | chr4_1:80301776-80301795 | None:intergenic | 35.0% | |
| TCAAAGCTAGGCATTTCAAA+AGG | + | chr4_1:80301978-80301997 | None:intergenic | 35.0% | |
| CAACAATGAGTATCAAAGCT+AGG | + | chr4_1:80301990-80302009 | None:intergenic | 35.0% | |
| ATGATATGTTGCTCTTAGAC+TGG | - | chr4_1:80302189-80302208 | Msa0576240:intron | 35.0% | |
| AGAATCTATCATCCTGATCA+AGG | - | chr4_1:80302255-80302274 | Msa0576240:intron | 35.0% | |
| !! | GGCTGAAAATTTTGATGTTG+AGG | - | chr4_1:80302438-80302457 | Msa0576240:intron | 35.0% |
| ATTACATCATAGGTCTTCTC+AGG | + | chr4_1:80302574-80302593 | None:intergenic | 35.0% | |
| ACGAGTGTAGATTACATCAT+AGG | + | chr4_1:80302584-80302603 | None:intergenic | 35.0% | |
| CCTTACTTTGATGTATAGCA+TGG | + | chr4_1:80302611-80302630 | None:intergenic | 35.0% | |
| CCATGCTATACATCAAAGTA+AGG | - | chr4_1:80302608-80302627 | Msa0576240:intron | 35.0% | |
| GTAACTGTAAGCATGAATGA+AGG | - | chr4_1:80302698-80302717 | Msa0576240:CDS | 35.0% | |
| ATTCCAAGCAATTGTTACAG+AGG | + | chr4_1:80302750-80302769 | None:intergenic | 35.0% | |
| TCACTTTCAACCTAGAGTTT+AGG | + | chr4_1:80302782-80302801 | None:intergenic | 35.0% | |
| ! | ACTCTAGGTTGAAAGTGATT+TGG | - | chr4_1:80302784-80302803 | Msa0576240:intron | 35.0% |
| TTTACGAGTAATAAGGTGGA+TGG | + | chr4_1:80302816-80302835 | None:intergenic | 35.0% | |
| GAGTACATTGCAGAATACAA+AGG | + | chr4_1:80303039-80303058 | None:intergenic | 35.0% | |
| TTGTATTCTGCAATGTACTC+TGG | - | chr4_1:80303039-80303058 | Msa0576240:intron | 35.0% | |
| ! | TTTTACAAGTGGTTGAAACC+TGG | - | chr4_1:80303097-80303116 | Msa0576240:intron | 35.0% |
| TTTGCTGAATACATCAAGGA+AGG | - | chr4_1:80303175-80303194 | Msa0576240:intron | 35.0% | |
| GCTTGTATTCTTTCATGTCA+TGG | + | chr4_1:80303213-80303232 | None:intergenic | 35.0% | |
| TGACATGAAAGAATACAAGC+AGG | - | chr4_1:80303213-80303232 | Msa0576240:intron | 35.0% | |
| AGTGTCAGCTGAAATCAAAT+GGG | + | chr4_1:80303265-80303284 | None:intergenic | 35.0% | |
| TAGTGTCAGCTGAAATCAAA+TGG | + | chr4_1:80303266-80303285 | None:intergenic | 35.0% | |
| TGGATTTGATGTCATTGTTG+AGG | - | chr4_1:80303354-80303373 | Msa0576240:intron | 35.0% | |
| ! | ATCAGGTTTGTTTGATCCTT+TGG | - | chr4_1:80303386-80303405 | Msa0576240:intron | 35.0% |
| ATCAGTGATTTCAGCAATGT+GGG | - | chr4_1:80303543-80303562 | Msa0576240:intron | 35.0% | |
| GGATGACTACAATGAAATTG+TGG | - | chr4_1:80303652-80303671 | Msa0576240:intron | 35.0% | |
| ACAATGAAATTGTGGAGAGA+TGG | - | chr4_1:80303660-80303679 | Msa0576240:intron | 35.0% | |
| TAGGAAAACTACTTTCACAC+TGG | + | chr4_1:80303800-80303819 | None:intergenic | 35.0% | |
| TCTTCTCAAAGATCCAAATG+AGG | + | chr4_1:80303927-80303946 | None:intergenic | 35.0% | |
| !! | TTGGTTTTTCAACAAGGAGA+TGG | + | chr4_1:80303975-80303994 | None:intergenic | 35.0% |
| CGATTCAAATCCTTACTAGT+TGG | + | chr4_1:80303994-80304013 | None:intergenic | 35.0% | |
| TTGAGAAACTCCTGGATCTA+CGG | + | chr4_1:80298423-80298442 | None:intergenic | 40.0% | |
| TGAGTGAGTGACATAATACC+TGG | + | chr4_1:80298525-80298544 | None:intergenic | 40.0% | |
| GGCTACTAAATGGTAGATGA+TGG | + | chr4_1:80299023-80299042 | None:intergenic | 40.0% | |
| AGTGTGGAAGTTTGAAAACG+GGG | + | chr4_1:80299100-80299119 | None:intergenic | 40.0% | |
| AGGAGTCCAAAGTATAAGTG+TGG | + | chr4_1:80299116-80299135 | None:intergenic | 40.0% | |
| AGGTACGTAATGACATTGAC+AGG | + | chr4_1:80299303-80299322 | None:intergenic | 40.0% | |
| TCCTTCATATTCTGGTAGCA+GGG | + | chr4_1:80299422-80299441 | None:intergenic | 40.0% | |
| TTCCTTCATATTCTGGTAGC+AGG | + | chr4_1:80299423-80299442 | None:intergenic | 40.0% | |
| TCCGGTAAATCTTCCAATAC+CGG | + | chr4_1:80299467-80299486 | None:intergenic | 40.0% | |
| TGGAAGATTTACCGGAGAAT+TGG | - | chr4_1:80299471-80299490 | Msa0576240:intron | 40.0% | |
| GTTCTACAGAACGTTATGAG+TGG | + | chr4_1:80299657-80299676 | None:intergenic | 40.0% | |
| ! | AGAAACATCCATCTTTGGAG+AGG | + | chr4_1:80299732-80299751 | None:intergenic | 40.0% |
| CCTTCAGAAACATCCATCTT+TGG | + | chr4_1:80299737-80299756 | None:intergenic | 40.0% | |
| ! | CCAAAGATGGATGTTTCTGA+AGG | - | chr4_1:80299734-80299753 | Msa0576240:intron | 40.0% |
| ! | ACAGCTTGTTTACTGTCAGT+TGG | + | chr4_1:80299943-80299962 | None:intergenic | 40.0% |
| TTCCCAATGCTGTTAAACAC+GGG | - | chr4_1:80300152-80300171 | Msa0576240:intron | 40.0% | |
| TACCCGTGTTTAACAGCATT+GGG | + | chr4_1:80300157-80300176 | None:intergenic | 40.0% | |
| ACTATAGCACTGTTGTGTAG+TGG | + | chr4_1:80300196-80300215 | None:intergenic | 40.0% | |
| AGCATATTGCGGAACAATAG+TGG | - | chr4_1:80300255-80300274 | Msa0576240:intron | 40.0% | |
| AGCACCAAGGGAAAAACAAA+AGG | + | chr4_1:80300373-80300392 | None:intergenic | 40.0% | |
| ATTGGTGGAAACAGGATTCT+CGG | + | chr4_1:80300459-80300478 | None:intergenic | 40.0% | |
| AATCCTGTTTCCACCAATCT+GGG | - | chr4_1:80300461-80300480 | Msa0576240:intron | 40.0% | |
| TTCTCTTTGAATCCCCAGAT+TGG | + | chr4_1:80300477-80300496 | None:intergenic | 40.0% | |
| ! | GGAACCCAGATTTTACACAA+AGG | - | chr4_1:80300519-80300538 | Msa0576240:intron | 40.0% |
| AATAATCTGGCAGAGACCAA+GGG | + | chr4_1:80300569-80300588 | None:intergenic | 40.0% | |
| !!! | TTAACGGGAGTGTTTTGTGA+TGG | - | chr4_1:80300706-80300725 | Msa0576240:intron | 40.0% |
| !! | GGAGTGTTTTGTGATGGTAA+AGG | - | chr4_1:80300712-80300731 | Msa0576240:intron | 40.0% |
| ! | GTGTTTTGTGATGGTAAAGG+TGG | - | chr4_1:80300715-80300734 | Msa0576240:intron | 40.0% |
| GAGACACCAACCGTAAAATT+TGG | + | chr4_1:80300764-80300783 | None:intergenic | 40.0% | |
| TGCATGAACAAAGGAGAAGA+CGG | + | chr4_1:80300990-80301009 | None:intergenic | 40.0% | |
| TGCCATATGAGTGATATCTC+TGG | - | chr4_1:80301023-80301042 | Msa0576240:intron | 40.0% | |
| GCCATATGAGTGATATCTCT+GGG | - | chr4_1:80301024-80301043 | Msa0576240:intron | 40.0% | |
| TCCCAGAGATATCACTCATA+TGG | + | chr4_1:80301028-80301047 | None:intergenic | 40.0% | |
| TTCCTTTGAGCTTTCTCTTG+TGG | - | chr4_1:80301049-80301068 | Msa0576240:intron | 40.0% | |
| TCCTTTGAGCTTTCTCTTGT+GGG | - | chr4_1:80301050-80301069 | Msa0576240:intron | 40.0% | |
| ! | TTTTCATGGTGCAGATTTGC+TGG | - | chr4_1:80301208-80301227 | Msa0576240:intron | 40.0% |
| !! | GATTTGCTGGATATGGCAAA+AGG | - | chr4_1:80301221-80301240 | Msa0576240:intron | 40.0% |
| ! | TTTATTAGCACTGGAGGACT+TGG | - | chr4_1:80301342-80301361 | Msa0576240:CDS | 40.0% |
| ! | ATGTTCCGTTGTCATTTACC+TGG | - | chr4_1:80301440-80301459 | Msa0576240:intron | 40.0% |
| CTAGACCAGGTAAATGACAA+CGG | + | chr4_1:80301448-80301467 | None:intergenic | 40.0% | |
| CACCTTGTAATTACTAGACC+AGG | + | chr4_1:80301461-80301480 | None:intergenic | 40.0% | |
| !!! | GACTGCTGTGTTTTTAGGTA+AGG | + | chr4_1:80301496-80301515 | None:intergenic | 40.0% |
| ACGTGTGCACAAGAAATAGT+TGG | - | chr4_1:80301555-80301574 | Msa0576240:intron | 40.0% | |
| CCAGTCACCAAAGAATGAAA+AGG | + | chr4_1:80301594-80301613 | None:intergenic | 40.0% | |
| !! | CCTTTTCATTCTTTGGTGAC+TGG | - | chr4_1:80301591-80301610 | Msa0576240:intron | 40.0% |
| TGCATGTATGATGCCATACT+TGG | - | chr4_1:80302212-80302231 | Msa0576240:intron | 40.0% | |
| AAAGGAACTTGTAGCTAAGC+TGG | - | chr4_1:80302351-80302370 | Msa0576240:intron | 40.0% | |
| !! | AAAGTACTGGATGTTGGTTG+TGG | - | chr4_1:80302391-80302410 | Msa0576240:intron | 40.0% |
| GGGAAATCACATTTATGGAG+AGG | + | chr4_1:80302477-80302496 | None:intergenic | 40.0% | |
| AGCACGGGAAATCACATTTA+TGG | + | chr4_1:80302482-80302501 | None:intergenic | 40.0% | |
| CTTACAGTTACATACACCTG+GGG | + | chr4_1:80302689-80302708 | None:intergenic | 40.0% | |
| GCTTACAGTTACATACACCT+GGG | + | chr4_1:80302690-80302709 | None:intergenic | 40.0% | |
| TGCTTACAGTTACATACACC+TGG | + | chr4_1:80302691-80302710 | None:intergenic | 40.0% | |
| CAAGCAATTGTTACAGAGGA+AGG | + | chr4_1:80302746-80302765 | None:intergenic | 40.0% | |
| CTTCCTCTGTAACAATTGCT+TGG | - | chr4_1:80302744-80302763 | Msa0576240:intron | 40.0% | |
| TGCAAGTGTAAGAACCGAAA+AGG | + | chr4_1:80302846-80302865 | None:intergenic | 40.0% | |
| CATTGCAGAATACAAAGGTC+AGG | + | chr4_1:80303034-80303053 | None:intergenic | 40.0% | |
| !! | ATGTACTCTGGATTTGTTGC+AGG | - | chr4_1:80303051-80303070 | Msa0576240:intron | 40.0% |
| GTAATTAGAAGTTGACCTCC+AGG | + | chr4_1:80303118-80303137 | None:intergenic | 40.0% | |
| ! | ACTGATTACTGCAAAAGTGC+TGG | - | chr4_1:80303136-80303155 | Msa0576240:intron | 40.0% |
| !! | ATCCTTTGGTCTAGTTTGCT+TGG | - | chr4_1:80303400-80303419 | Msa0576240:intron | 40.0% |
| TACCAAGCAAACTAGACCAA+AGG | + | chr4_1:80303405-80303424 | None:intergenic | 40.0% | |
| CATCAGTGATTTCAGCAATG+TGG | - | chr4_1:80303542-80303561 | Msa0576240:intron | 40.0% | |
| TGAAATTGTGGAGAGATGGA+AGG | - | chr4_1:80303664-80303683 | Msa0576240:intron | 40.0% | |
| ATAATAGCAAGAACTGCAGC+AGG | + | chr4_1:80303771-80303790 | None:intergenic | 40.0% | |
| GGAGATGGAAAACAAGATGA+GGG | + | chr4_1:80303960-80303979 | None:intergenic | 40.0% | |
| AGGAGATGGAAAACAAGATG+AGG | + | chr4_1:80303961-80303980 | None:intergenic | 40.0% | |
| GTAGATTGTGTGGTGTGAAG+AGG | - | chr4_1:80298323-80298342 | Msa0576240:three_prime_UTR | 45.0% | |
| ATTGTGTGGTGTGAAGAGGT+AGG | - | chr4_1:80298327-80298346 | Msa0576240:three_prime_UTR | 45.0% | |
| GATCGATTAATGCAGCAGAG+AGG | - | chr4_1:80298385-80298404 | Msa0576240:three_prime_UTR | 45.0% | |
| GTAGATCCAGGAGTTTCTCA+AGG | - | chr4_1:80298422-80298441 | Msa0576240:three_prime_UTR | 45.0% | |
| ATTAAGTGCCTTCGATAGCG+AGG | + | chr4_1:80298453-80298472 | None:intergenic | 45.0% | |
| CATAATACCTGGTGAAGCCA+TGG | + | chr4_1:80298514-80298533 | None:intergenic | 45.0% | |
| CTTGTCGAGATCAGAAGCTT+TGG | + | chr4_1:80298702-80298721 | None:intergenic | 45.0% | |
| CAAAGCTTCTGATCTCGACA+AGG | - | chr4_1:80298700-80298719 | Msa0576240:CDS | 45.0% | |
| ! | ACAAGTAAGAGCATGACGTC+AGG | - | chr4_1:80299211-80299230 | Msa0576240:CDS | 45.0% |
| TCCCTGCTACCAGAATATGA+AGG | - | chr4_1:80299418-80299437 | Msa0576240:intron | 45.0% | |
| TCAGTTATTGAGCTTGGAGC+CGG | - | chr4_1:80299445-80299464 | Msa0576240:intron | 45.0% | |
| ! | GCCGGTATTGGAAGATTTAC+CGG | - | chr4_1:80299463-80299482 | Msa0576240:intron | 45.0% |
| GACATCAGCGCACAAAAACT+TGG | + | chr4_1:80299708-80299727 | None:intergenic | 45.0% | |
| TGATGTCACCTCTCCAAAGA+TGG | - | chr4_1:80299721-80299740 | Msa0576240:intron | 45.0% | |
| ! | CAGCATTGGGAAATACTACG+CGG | + | chr4_1:80300144-80300163 | None:intergenic | 45.0% |
| CTACCCGTGTTTAACAGCAT+TGG | + | chr4_1:80300158-80300177 | None:intergenic | 45.0% | |
| ATGCTGTTAAACACGGGTAG+TGG | - | chr4_1:80300158-80300177 | Msa0576240:intron | 45.0% | |
| ! | GTGTATAGTGTGGCGGAATT+TGG | + | chr4_1:80300286-80300305 | None:intergenic | 45.0% |
| !!! | TGTTTTTCCCTTGGTGCTTC+AGG | - | chr4_1:80300375-80300394 | Msa0576240:intron | 45.0% |
| ! | TTCTCAACCTGAAGCACCAA+GGG | + | chr4_1:80300385-80300404 | None:intergenic | 45.0% |
| ! | ATTCTCAACCTGAAGCACCA+AGG | + | chr4_1:80300386-80300405 | None:intergenic | 45.0% |
| GAATCCTGTTTCCACCAATC+TGG | - | chr4_1:80300460-80300479 | Msa0576240:intron | 45.0% | |
| ATCCTGTTTCCACCAATCTG+GGG | - | chr4_1:80300462-80300481 | Msa0576240:intron | 45.0% | |
| TCTTTGAATCCCCAGATTGG+TGG | + | chr4_1:80300474-80300493 | None:intergenic | 45.0% | |
| CAATAATCTGGCAGAGACCA+AGG | + | chr4_1:80300570-80300589 | None:intergenic | 45.0% | |
| !! | TGATGGTAAAGGTGGGCTAT+AGG | - | chr4_1:80300723-80300742 | Msa0576240:intron | 45.0% |
| !! | TAAAGGTGGGCTATAGGTCA+TGG | - | chr4_1:80300729-80300748 | Msa0576240:intron | 45.0% |
| !! | AAAGGTGGGCTATAGGTCAT+GGG | - | chr4_1:80300730-80300749 | Msa0576240:intron | 45.0% |
| GTCTTCTCCTTTGTTCATGC+AGG | - | chr4_1:80300989-80301008 | Msa0576240:intron | 45.0% | |
| ! | CTTGTGGGCTGTAAATGCAT+TGG | - | chr4_1:80301065-80301084 | Msa0576240:CDS | 45.0% |
| !! | TGGTGCAGATTTGCTGGATA+TGG | - | chr4_1:80301214-80301233 | Msa0576240:intron | 45.0% |
| TTACGATATGAGCGCGTGTA+TGG | - | chr4_1:80301312-80301331 | Msa0576240:CDS | 45.0% | |
| CTCCAGTGCTAATAAAGCCT+TGG | + | chr4_1:80301338-80301357 | None:intergenic | 45.0% | |
| !! | CAAGGCTTTATTAGCACTGG+AGG | - | chr4_1:80301336-80301355 | Msa0576240:CDS | 45.0% |
| GATAAGCAGCGGTGAATCTT+TGG | + | chr4_1:80302150-80302169 | None:intergenic | 45.0% | |
| TTCTTGGGCAGAAACGACAA+AGG | - | chr4_1:80302333-80302352 | Msa0576240:intron | 45.0% | |
| ! | AAAGCCTGGTCAGAAAGTAC+TGG | - | chr4_1:80302378-80302397 | Msa0576240:intron | 45.0% |
| ACATCCAGTACTTTCTGACC+AGG | + | chr4_1:80302385-80302404 | None:intergenic | 45.0% | |
| !! | GGTCAGAAAGTACTGGATGT+TGG | - | chr4_1:80302385-80302404 | Msa0576240:intron | 45.0% |
| GATAGCACGTTCAATAGCAC+GGG | + | chr4_1:80302497-80302516 | None:intergenic | 45.0% | |
| CGATAGCACGTTCAATAGCA+CGG | + | chr4_1:80302498-80302517 | None:intergenic | 45.0% | |
| ! | CGTGCTATTGAACGTGCTAT+CGG | - | chr4_1:80302496-80302515 | Msa0576240:intron | 45.0% |
| !! | AGCTTTATCCTTTTAGCCCC+AGG | - | chr4_1:80302670-80302689 | Msa0576240:CDS | 45.0% |
| TACATACACCTGGGGCTAAA+AGG | + | chr4_1:80302681-80302700 | None:intergenic | 45.0% | |
| ! | GGTTGAAAGTGATTTGGCAG+TGG | - | chr4_1:80302790-80302809 | Msa0576240:intron | 45.0% |
| TACAAGTGGTTGAAACCTGG+AGG | - | chr4_1:80303100-80303119 | Msa0576240:intron | 45.0% | |
| GCTGAATACATCAAGGAAGG+AGG | - | chr4_1:80303178-80303197 | Msa0576240:intron | 45.0% | |
| TCTAAATCTGCTGCAGATGC+TGG | - | chr4_1:80303324-80303343 | Msa0576240:intron | 45.0% | |
| TGTTGAGGATCGAACTGATC+AGG | - | chr4_1:80303369-80303388 | Msa0576240:intron | 45.0% | |
| GTTTGTGAAAACACTGCAGC+AGG | - | chr4_1:80303485-80303504 | Msa0576240:intron | 45.0% | |
| !!! | TTTTTTTTTTTTATATACAT+AGG | - | chr4_1:80299390-80299409 | Msa0576240:intron | 5.0% |
| GAGCTTCTAACCGTAGATCC+AGG | - | chr4_1:80298410-80298429 | Msa0576240:three_prime_UTR | 50.0% | |
| CATTCTTCCATGGCTTCACC+AGG | - | chr4_1:80298504-80298523 | Msa0576240:three_prime_UTR | 50.0% | |
| ! | TTGTGCTGATCTCTCTGTCG+AGG | - | chr4_1:80298661-80298680 | Msa0576240:exon | 50.0% |
| CGACAAGGAAGAAAGACCTG+AGG | - | chr4_1:80298715-80298734 | Msa0576240:CDS | 50.0% | |
| ATCCACGGGTGAACTGAAGA+GGG | + | chr4_1:80298879-80298898 | None:intergenic | 50.0% | |
| ATTGAGCTTGGAGCCGGTAT+TGG | - | chr4_1:80299451-80299470 | Msa0576240:intron | 50.0% | |
| AGCTTTCAGCGCCAATTCTC+CGG | + | chr4_1:80299485-80299504 | None:intergenic | 50.0% | |
| GCTGAAAGCTGGTCAATTGC+TGG | - | chr4_1:80299495-80299514 | Msa0576240:intron | 50.0% | |
| ATCCCCAGATTGGTGGAAAC+AGG | + | chr4_1:80300467-80300486 | None:intergenic | 50.0% | |
| GCCCACAAGAGAAAGCTCAA+AGG | + | chr4_1:80301054-80301073 | None:intergenic | 50.0% | |
| !! | GGCCAAGGCTTTATTAGCAC+TGG | - | chr4_1:80301333-80301352 | Msa0576240:CDS | 50.0% |
| ! | GCTGCGACTGCTGTGTTTTT+AGG | + | chr4_1:80301501-80301520 | None:intergenic | 50.0% |
| GCTAAGCTGGAACTAAAGCC+TGG | - | chr4_1:80302364-80302383 | Msa0576240:intron | 50.0% | |
| ! | CTGGATGTTGGTTGTGGTGT+TGG | - | chr4_1:80302397-80302416 | Msa0576240:intron | 50.0% |
| ! | GATGTTGGTTGTGGTGTTGG+CGG | - | chr4_1:80302400-80302419 | Msa0576240:intron | 50.0% |
| TGGCGGAGGTGATTTCTACA+TGG | - | chr4_1:80302417-80302436 | Msa0576240:intron | 50.0% | |
| AATTGCTCTCGAGAGCCAGA+AGG | - | chr4_1:80303512-80303531 | Msa0576240:intron | 50.0% | |
| CACTGATGAAGTCGTCCTTC+TGG | + | chr4_1:80303530-80303549 | None:intergenic | 50.0% | |
| ATGGAAGGCGAAGCAGATCA+GGG | - | chr4_1:80303679-80303698 | Msa0576240:intron | 50.0% | |
| TGTGGTGTGAAGAGGTAGGC+AGG | - | chr4_1:80298331-80298350 | Msa0576240:three_prime_UTR | 55.0% | |
| TGTGAAGAGGTAGGCAGGCA+AGG | - | chr4_1:80298336-80298355 | Msa0576240:three_prime_UTR | 55.0% | |
| GCGAGACCTTGAGAAACTCC+TGG | + | chr4_1:80298431-80298450 | None:intergenic | 55.0% | |
| AAGATGAGGAGACGGACCTC+AGG | + | chr4_1:80298734-80298753 | None:intergenic | 55.0% | |
| CATCCACGGGTGAACTGAAG+AGG | + | chr4_1:80298880-80298899 | None:intergenic | 55.0% | |
| ! | GGAGAATTGGCGCTGAAAGC+TGG | - | chr4_1:80299484-80299503 | Msa0576240:intron | 55.0% |
| ! | AGCTGGTCAATTGCTGGCTG+TGG | - | chr4_1:80299501-80299520 | Msa0576240:intron | 55.0% |
| CTGGGTTCCCTGTAGTGAGT+AGG | + | chr4_1:80300508-80300527 | None:intergenic | 55.0% | |
| TATGAGCGCGTGTATGGCCA+AGG | - | chr4_1:80301318-80301337 | Msa0576240:CDS | 55.0% | |
| ! | TCAGCGAGAAGCGTGTGATC+AGG | - | chr4_1:80301923-80301942 | Msa0576240:CDS | 55.0% |
| CTGCAGATGCTGGAGAATGC+TGG | - | chr4_1:80303334-80303353 | Msa0576240:intron | 55.0% | |
| GATGGAAGGCGAAGCAGATC+AGG | - | chr4_1:80303678-80303697 | Msa0576240:intron | 55.0% | |
| TGGAAGGCGAAGCAGATCAG+GGG | - | chr4_1:80303680-80303699 | Msa0576240:intron | 55.0% | |
| AAGCAGATCAGGGGTGAACG+AGG | - | chr4_1:80303689-80303708 | Msa0576240:CDS | 55.0% | |
| AGCAGATCAGGGGTGAACGA+GGG | - | chr4_1:80303690-80303709 | Msa0576240:CDS | 55.0% | |
| TGAACGAGGGGAGCAGAAGT+GGG | - | chr4_1:80303703-80303722 | Msa0576240:CDS | 55.0% | |
| AGGTCTCGCCTCGCTATCGA+AGG | - | chr4_1:80298442-80298461 | Msa0576240:three_prime_UTR | 60.0% | |
| CTCCCTCTTCAGTTCACCCG+TGG | - | chr4_1:80298874-80298893 | Msa0576240:CDS | 60.0% | |
| !! | GTTGGTTGTGGTGTTGGCGG+AGG | - | chr4_1:80302403-80302422 | Msa0576240:intron | 60.0% |
| GCAGATCAGGGGTGAACGAG+GGG | - | chr4_1:80303691-80303710 | Msa0576240:CDS | 60.0% | |
| GTGAACGAGGGGAGCAGAAG+TGG | - | chr4_1:80303702-80303721 | Msa0576240:CDS | 60.0% | |
| GAACGAGGGGAGCAGAAGTG+GGG | - | chr4_1:80303704-80303723 | Msa0576240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 80298322 | 80304102 | 80298322 | ID=Msa0576240;Name=Msa0576240 |
| chr4_1 | mRNA | 80298322 | 80304102 | 80298322 | ID=Msa0576240-mRNA-1;Parent=Msa0576240;Name=Msa0576240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191|1|1|1|1|1|12|351|493 |
| chr4_1 | exon | 80298322 | 80298771 | 80298322 | ID=Msa0576240-mRNA-1:exon:28730;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80298864 | 80298938 | 80298864 | ID=Msa0576240-mRNA-1:exon:28729;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80299034 | 80299084 | 80299034 | ID=Msa0576240-mRNA-1:exon:28728;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80299190 | 80299351 | 80299190 | ID=Msa0576240-mRNA-1:exon:28727;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80299800 | 80300080 | 80299800 | ID=Msa0576240-mRNA-1:exon:28726;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80301061 | 80301202 | 80301061 | ID=Msa0576240-mRNA-1:exon:28725;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80301303 | 80301413 | 80301303 | ID=Msa0576240-mRNA-1:exon:28724;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80301884 | 80302027 | 80301884 | ID=Msa0576240-mRNA-1:exon:28723;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80302613 | 80302750 | 80302613 | ID=Msa0576240-mRNA-1:exon:28722;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80302875 | 80303012 | 80302875 | ID=Msa0576240-mRNA-1:exon:28721;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80303688 | 80303815 | 80303688 | ID=Msa0576240-mRNA-1:exon:28720;Parent=Msa0576240-mRNA-1 |
| chr4_1 | exon | 80303899 | 80304102 | 80303899 | ID=Msa0576240-mRNA-1:exon:28719;Parent=Msa0576240-mRNA-1 |
| chr4_1 | five_prime_UTR | 80303912 | 80304102 | 80303912 | ID=Msa0576240-mRNA-1:five_prime_utr;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80303899 | 80303911 | 80303899 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80303688 | 80303815 | 80303688 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80302875 | 80303012 | 80302875 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80302613 | 80302750 | 80302613 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80301884 | 80302027 | 80301884 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80301303 | 80301413 | 80301303 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80301061 | 80301202 | 80301061 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80299800 | 80300080 | 80299800 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80299190 | 80299351 | 80299190 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80299034 | 80299084 | 80299034 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80298864 | 80298938 | 80298864 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | CDS | 80298673 | 80298771 | 80298673 | ID=Msa0576240-mRNA-1:cds;Parent=Msa0576240-mRNA-1 |
| chr4_1 | three_prime_UTR | 80298322 | 80298672 | 80298322 | ID=Msa0576240-mRNA-1:three_prime_utr;Parent=Msa0576240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
