AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0949600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0949600 MtrunA17_Chr6g0464861 97.717 219 5 0 1 219 238 456 1.47e-155 439
Msa0949600 MtrunA17_Chr6g0464841 92.694 219 16 0 1 219 239 457 2.25e-148 421
Msa0949600 MtrunA17_Chr6g0464871 86.111 216 30 0 3 218 253 468 2.39e-132 380
Msa0949600 MtrunA17_Chr6g0464881 66.667 216 72 0 1 216 239 454 1.54e-109 322
Msa0949600 MtrunA17_Chr6g0464921 67.727 220 70 1 1 219 239 458 3.46e-105 311
Msa0949600 MtrunA17_Chr7g0249961 65.741 216 73 1 1 216 45 259 4.52e-100 291
Msa0949600 MtrunA17_Chr7g0249981 66.512 215 71 1 2 216 253 466 1.15e-98 295
Msa0949600 MtrunA17_Chr7g0250001 60.465 215 84 1 2 216 234 447 2.15e-92 278
Msa0949600 MtrunA17_Chr7g0249931 56.422 218 92 2 2 218 270 485 4.53e-84 258
Msa0949600 MtrunA17_Chr5g0414331 55.300 217 96 1 3 218 239 455 2.85e-82 252
Msa0949600 MtrunA17_Chr5g0414321 54.884 215 96 1 3 216 237 451 1.09e-81 251
Msa0949600 MtrunA17_Chr8g0380531 49.315 219 107 2 3 218 242 459 2.53e-67 214
Msa0949600 MtrunA17_Chr1g0207981 47.596 208 103 3 11 213 263 469 2.65e-64 206
Msa0949600 MtrunA17_Chr8g0377941 50.952 210 97 4 7 213 252 458 5.50e-63 202
Msa0949600 MtrunA17_Chr8g0377921 47.248 218 106 5 4 213 244 460 1.83e-61 199
Msa0949600 MtrunA17_Chr3g0121991 45.217 230 111 5 2 217 318 546 1.23e-60 198
Msa0949600 MtrunA17_Chr1g0207931 47.549 204 96 4 26 219 298 500 4.59e-60 196
Msa0949600 MtrunA17_Chr3g0122001 49.000 200 90 3 26 213 750 949 4.72e-59 199
Msa0949600 MtrunA17_Chr3g0122001 47.264 201 93 4 26 213 270 470 8.33e-55 187
Msa0949600 MtrunA17_Chr1g0207971 47.090 189 97 2 26 213 264 450 8.95e-59 191
Msa0949600 MtrunA17_Chr3g0098111 47.475 198 93 4 26 213 270 466 1.60e-57 189
Msa0949600 MtrunA17_Chr1g0207951 46.032 189 98 2 26 213 382 567 1.12e-56 193
Msa0949600 MtrunA17_Chr1g0207951 47.716 197 96 4 26 218 917 1110 1.18e-55 190
Msa0949600 MtrunA17_Chr4g0053501 43.842 203 104 2 25 217 263 465 1.50e-54 181
Msa0949600 MtrunA17_Chr5g0401721 43.367 196 104 2 25 213 272 467 9.99e-54 179
Msa0949600 MtrunA17_Chr1g0207861 48.485 198 91 4 26 213 269 465 4.16e-53 177
Msa0949600 MtrunA17_Chr8g0365811 44.878 205 98 4 23 213 751 954 4.71e-53 182
Msa0949600 MtrunA17_Chr8g0365811 45.050 202 96 5 26 213 272 472 1.23e-48 170
Msa0949600 MtrunA17_Chr4g0053321 42.079 202 107 2 25 216 278 479 9.84e-52 174
Msa0949600 MtrunA17_Chr1g0161351 47.980 198 92 4 26 213 298 494 2.65e-51 173
Msa0949600 MtrunA17_Chr1g0207831 43.005 193 102 4 26 213 271 460 8.85e-50 168
Msa0949600 MtrunA17_Chr7g0218811 41.579 190 106 2 26 213 260 446 4.48e-47 160
Msa0949600 MtrunA17_Chr2g0278711 41.624 197 105 4 25 214 281 474 1.80e-46 160
Msa0949600 MtrunA17_Chr8g0382021 37.850 214 115 4 23 218 277 490 6.27e-46 158
Msa0949600 MtrunA17_Chr6g0462551 42.132 197 105 4 25 212 264 460 5.26e-45 156
Msa0949600 MtrunA17_Chr4g0044511 37.981 208 113 4 25 216 297 504 5.29e-45 156
Msa0949600 MtrunA17_Chr3g0118721 37.557 221 118 5 6 213 73 286 5.48e-45 151
Msa0949600 MtrunA17_Chr1g0159551 37.799 209 115 4 25 218 253 461 6.38e-45 155
Msa0949600 MtrunA17_Chr6g0486251 41.872 203 100 4 21 205 251 453 1.45e-44 154
Msa0949600 MtrunA17_Chr6g0486201 41.872 203 100 4 21 205 251 453 1.45e-44 154
Msa0949600 MtrunA17_Chr4g0014061 41.429 210 105 5 25 216 263 472 1.83e-44 154
Msa0949600 MtrunA17_Chr7g0243871 40.670 209 106 4 26 216 264 472 1.95e-44 154
Msa0949600 MtrunA17_Chr6g0462541 41.117 197 107 3 25 212 263 459 3.22e-44 154
Msa0949600 MtrunA17_Chr7g0218831 39.175 194 109 3 25 214 249 437 3.48e-44 153
Msa0949600 MtrunA17_Chr1g0173121 36.019 211 120 4 23 218 254 464 1.86e-43 151
Msa0949600 MtrunA17_Chr8g0339451 38.813 219 113 3 21 218 247 465 2.20e-43 151
Msa0949600 MtrunA17_Chr7g0232391 37.681 207 112 3 25 214 257 463 2.62e-43 151
Msa0949600 MtrunA17_Chr3g0118771 36.771 223 127 4 6 218 272 490 3.30e-43 151
Msa0949600 MtrunA17_Chr8g0339461 40.376 213 106 3 21 212 255 467 7.95e-43 150
Msa0949600 MtrunA17_Chr3g0118711 38.863 211 114 5 11 213 274 477 9.37e-43 150
Msa0949600 MtrunA17_Chr5g0393591 40.306 196 93 3 25 213 254 432 1.02e-42 149
Msa0949600 MtrunA17_Chr7g0218841 38.660 194 110 3 25 214 250 438 1.35e-42 149
Msa0949600 MtrunA17_Chr7g0232311 38.356 219 116 3 15 214 243 461 1.60e-42 149
Msa0949600 MtrunA17_Chr7g0232401 39.252 214 111 4 17 212 251 463 1.60e-42 149
Msa0949600 MtrunA17_Chr3g0079731 38.498 213 104 5 25 213 268 477 2.21e-42 149
Msa0949600 MtrunA17_Chr8g0336691 40.580 207 104 3 25 212 1169 1375 3.34e-42 152
Msa0949600 MtrunA17_Chr8g0336691 37.500 216 116 3 16 212 254 469 1.18e-39 144
Msa0949600 MtrunA17_Chr8g0336691 39.487 195 105 3 19 211 724 907 3.04e-37 137
Msa0949600 MtrunA17_Chr8g0339601 37.674 215 113 3 19 212 112 326 4.01e-42 145
Msa0949600 MtrunA17_Chr8g0335161 39.524 210 109 4 25 216 257 466 4.10e-42 148
Msa0949600 MtrunA17_Chr8g0347281 39.048 210 107 4 23 212 260 468 4.45e-42 148
Msa0949600 MtrunA17_Chr7g0243801 38.938 226 119 5 9 216 252 476 6.43e-42 148
Msa0949600 MtrunA17_Chr5g0426431 40.513 195 105 4 25 213 285 474 6.99e-42 147
Msa0949600 MtrunA17_Chr3g0112761 41.176 204 110 3 20 216 249 449 7.01e-42 147
Msa0949600 MtrunA17_Chr4g0060511 39.234 209 109 4 26 216 279 487 9.76e-42 147
Msa0949600 MtrunA17_Chr6g0462571 39.086 197 111 3 25 212 261 457 9.91e-42 147
Msa0949600 MtrunA17_Chr3g0092641 40.206 194 105 4 25 212 285 473 1.04e-41 147
Msa0949600 MtrunA17_Chr7g0243781 39.336 211 108 4 26 216 265 475 1.16e-41 147
Msa0949600 MtrunA17_Chr6g0454301 38.350 206 117 4 13 213 527 727 1.19e-41 149
Msa0949600 MtrunA17_Chr6g0454301 33.505 194 120 3 25 213 37 226 1.27e-33 127
Msa0949600 MtrunA17_Chr6g0459311 40.394 203 103 4 21 205 258 460 1.22e-41 147
Msa0949600 MtrunA17_Chr4g0066151 38.756 209 104 6 25 209 264 472 1.25e-41 147
Msa0949600 MtrunA17_Chr7g0232331 37.619 210 113 4 25 216 257 466 1.37e-41 147
Msa0949600 MtrunA17_Chr7g0243771 38.938 226 119 5 9 216 251 475 1.88e-41 146
Msa0949600 MtrunA17_Chr1g0153461 36.893 206 112 3 25 212 3 208 2.26e-41 140
Msa0949600 MtrunA17_Chr7g0218791 39.896 193 108 3 23 213 255 441 2.26e-41 145
Msa0949600 MtrunA17_Chr7g0232411 36.715 207 114 3 25 214 257 463 2.51e-41 146
Msa0949600 MtrunA17_Chr8g0347271 38.462 208 107 4 25 212 263 469 2.93e-41 146
Msa0949600 MtrunA17_Chr8g0336731 37.736 212 115 3 19 213 276 487 3.09e-41 146
Msa0949600 MtrunA17_Chr7g0218821 37.173 191 115 2 25 213 260 447 3.43e-41 145
Msa0949600 MtrunA17_Chr3g0112771 41.206 199 106 4 25 216 257 451 4.30e-41 145
Msa0949600 MtrunA17_Chr8g0335141 39.524 210 109 5 25 216 259 468 4.36e-41 145
Msa0949600 MtrunA17_Chr4g0066221 40.367 218 106 6 25 218 265 482 5.12e-41 145
Msa0949600 MtrunA17_Chr8g0336651 38.389 211 113 3 19 212 250 460 5.50e-41 148
Msa0949600 MtrunA17_Chr8g0336651 39.252 214 109 4 19 211 1025 1238 3.93e-40 145
Msa0949600 MtrunA17_Chr8g0336651 38.660 194 106 2 19 212 590 770 5.25e-37 137
Msa0949600 MtrunA17_Chr6g0462531 41.053 190 103 4 25 205 264 453 6.90e-41 144
Msa0949600 MtrunA17_Chr3g0118671 37.755 196 112 3 25 214 280 471 7.27e-41 145
Msa0949600 MtrunA17_Chr6g0462521 42.105 190 101 4 25 205 250 439 7.71e-41 144
Msa0949600 MtrunA17_Chr5g0426401 41.341 179 95 3 25 198 118 291 7.80e-41 141
Msa0949600 MtrunA17_Chr7g0275511 38.991 218 113 5 11 209 252 468 8.55e-41 144
Msa0949600 MtrunA17_Chr5g0419771 37.799 209 109 6 26 213 301 509 1.25e-40 145
Msa0949600 MtrunA17_Chr6g0449931 38.863 211 109 3 26 216 257 467 1.45e-40 144
Msa0949600 MtrunA17_Chr8g0373301 37.981 208 113 3 21 212 255 462 1.48e-40 144
Msa0949600 MtrunA17_Chr6g0454221 37.113 194 113 3 25 213 38 227 1.54e-40 140
Msa0949600 MtrunA17_Chr8g0366391 39.604 202 112 4 25 216 276 477 1.58e-40 144
Msa0949600 MtrunA17_Chr8g0361371 38.498 213 107 5 25 213 255 467 1.64e-40 144
Msa0949600 MtrunA17_Chr8g0339441 38.278 209 108 3 25 212 217 425 1.68e-40 143
Msa0949600 MtrunA17_Chr8g0336741 37.915 211 114 3 19 212 257 467 1.84e-40 144
Msa0949600 MtrunA17_Chr7g0265141 39.914 233 116 9 1 213 254 482 2.87e-40 143
Msa0949600 MtrunA17_Chr6g0454401 36.765 204 114 4 25 219 288 485 3.02e-40 143
Msa0949600 MtrunA17_Chr1g0153451 36.893 206 112 3 25 212 254 459 3.61e-40 143
Msa0949600 MtrunA17_Chr4g0066201 36.620 213 115 4 26 218 264 476 4.53e-40 143
Msa0949600 MtrunA17_Chr5g0412111 38.776 196 111 4 25 216 271 461 5.10e-40 142
Msa0949600 MtrunA17_Chr7g0243931 38.756 209 110 3 26 216 282 490 6.06e-40 142
Msa0949600 MtrunA17_Chr3g0118701 37.915 211 116 5 11 213 276 479 6.29e-40 142
Msa0949600 MtrunA17_Chr4g0066131 36.111 216 114 5 25 216 259 474 7.02e-40 142
Msa0949600 MtrunA17_Chr4g0044501 38.164 207 118 3 21 217 270 476 8.45e-40 142
Msa0949600 MtrunA17_Chr6g0454141 36.364 198 109 3 25 213 287 476 1.02e-39 142
Msa0949600 MtrunA17_Chr7g0232341 42.529 174 83 3 25 181 257 430 1.14e-39 141
Msa0949600 MtrunA17_Chr6g0453961 37.629 194 112 3 25 213 297 486 1.15e-39 142
Msa0949600 MtrunA17_Chr7g0243631 38.095 210 111 4 26 216 277 486 1.40e-39 142
Msa0949600 MtrunA17_Chr6g0454201 37.113 194 113 3 25 213 288 477 1.59e-39 141
Msa0949600 MtrunA17_Chr3g0078841 37.629 194 112 3 25 213 285 474 1.84e-39 141
Msa0949600 MtrunA17_Chr8g0374971 35.780 218 116 5 25 218 265 482 2.40e-39 141
Msa0949600 MtrunA17_Chr6g0463861 35.135 222 120 6 21 218 254 475 2.95e-39 140
Msa0949600 MtrunA17_Chr4g0044521 37.131 237 125 5 2 219 234 465 3.07e-39 140
Msa0949600 MtrunA17_Chr4g0066261 35.931 231 124 6 2 209 245 474 3.28e-39 140
Msa0949600 MtrunA17_Chr3g0118691 36.916 214 120 5 8 213 273 479 3.38e-39 140
Msa0949600 MtrunA17_Chr7g0265101 37.379 206 111 4 26 213 278 483 3.39e-39 140
Msa0949600 MtrunA17_Chr7g0217881 36.224 196 112 3 25 213 269 458 4.23e-39 140
Msa0949600 MtrunA17_Chr8g0339631 37.037 216 116 4 16 212 250 464 4.32e-39 140
Msa0949600 MtrunA17_Chr7g0243711 36.842 209 114 4 26 216 108 316 4.47e-39 137
Msa0949600 MtrunA17_Chr6g0454191 37.113 194 113 3 25 213 288 477 9.22e-39 139
Msa0949600 MtrunA17_Chr7g0275681 38.009 221 120 6 9 213 258 477 9.75e-39 139
Msa0949600 MtrunA17_Chr8g0374901 36.842 209 108 5 25 209 263 471 1.02e-38 139
Msa0949600 MtrunA17_Chr3g0106251 38.579 197 113 4 26 218 103 295 1.22e-38 135
Msa0949600 MtrunA17_Chr6g0454121 36.082 194 115 3 25 213 286 475 1.31e-38 139
Msa0949600 MtrunA17_Chr6g0454151 36.082 194 115 3 25 213 285 474 1.53e-38 139
Msa0949600 MtrunA17_Chr7g0243681 37.281 228 122 6 8 216 254 479 2.04e-38 138
Msa0949600 MtrunA17_Chr6g0454341 36.598 194 114 3 25 213 285 474 2.31e-38 138
Msa0949600 MtrunA17_Chr8g0336331 37.113 194 113 3 25 213 284 473 2.80e-38 138
Msa0949600 MtrunA17_Chr6g0454321 38.798 183 103 3 25 202 285 463 3.38e-38 139
Msa0949600 MtrunA17_Chr8g0334861 37.383 214 113 5 21 214 249 461 4.30e-38 137
Msa0949600 MtrunA17_Chr4g0050341 38.889 198 111 4 25 216 297 490 4.37e-38 137
Msa0949600 MtrunA17_Chr8g0374941 35.780 218 116 6 25 218 1202 1419 4.76e-38 140
Msa0949600 MtrunA17_Chr8g0374941 36.126 191 98 5 25 191 729 919 7.42e-33 125
Msa0949600 MtrunA17_Chr8g0374941 35.149 202 107 6 25 202 264 465 1.08e-32 124
Msa0949600 MtrunA17_Chr6g0454271 34.536 194 118 3 25 213 94 283 5.19e-38 133
Msa0949600 MtrunA17_Chr5g0412131 37.824 193 111 4 25 213 279 466 5.26e-38 137
Msa0949600 MtrunA17_Chr8g0334831 41.111 180 78 4 25 176 254 433 5.91e-38 137
Msa0949600 MtrunA17_Chr6g0454331 36.598 194 114 3 25 213 286 475 6.08e-38 137
Msa0949600 MtrunA17_Chr6g0454131 34.518 197 114 3 25 213 286 475 6.14e-38 137
Msa0949600 MtrunA17_Chr5g0412101 36.735 196 115 4 25 216 280 470 6.35e-38 137
Msa0949600 MtrunA17_Chr4g0066281 37.321 209 111 4 25 213 255 463 6.46e-38 137
Msa0949600 MtrunA17_Chr7g0235051 38.119 202 107 4 26 209 245 446 7.01e-38 137
Msa0949600 MtrunA17_Chr5g0423981 36.082 194 115 3 25 213 252 441 7.42e-38 136
Msa0949600 MtrunA17_Chr1g0179901 36.986 219 115 7 16 213 274 490 8.19e-38 137
Msa0949600 MtrunA17_Chr5g0432731 34.826 201 125 4 18 214 96 294 9.71e-38 133
Msa0949600 MtrunA17_Chr6g0454361 35.204 196 114 3 25 213 288 477 9.75e-38 136
Msa0949600 MtrunA17_Chr6g0452771 36.598 194 114 3 25 213 287 476 1.17e-37 136
Msa0949600 MtrunA17_Chr7g0243911 41.053 190 93 4 26 198 22 209 1.65e-37 130
Msa0949600 MtrunA17_Chr7g0243861 38.278 209 111 3 26 216 279 487 2.56e-37 135
Msa0949600 MtrunA17_Chr8g0370941 37.273 220 102 6 22 205 258 477 2.59e-37 135
Msa0949600 MtrunA17_Chr6g0454211 37.113 194 113 3 25 213 574 763 2.77e-37 137
Msa0949600 MtrunA17_Chr6g0454211 39.623 106 38 3 25 130 157 236 1.24e-17 80.9
Msa0949600 MtrunA17_Chr6g0463851 35.321 218 117 5 25 218 267 484 3.73e-37 135
Msa0949600 MtrunA17_Chr7g0243761 39.196 199 94 5 26 216 275 454 3.78e-37 134
Msa0949600 MtrunA17_Chr7g0265051 36.408 206 113 4 26 213 276 481 5.36e-37 135
Msa0949600 MtrunA17_Chr4g0066171 34.742 213 119 4 26 218 266 478 5.73e-37 134
Msa0949600 MtrunA17_Chr8g0359821 38.071 197 107 6 25 211 285 476 8.43e-37 134
Msa0949600 MtrunA17_Chr7g0265151 35.294 221 123 5 18 218 265 485 8.50e-37 134
Msa0949600 MtrunA17_Chr5g0448521 35.122 205 106 4 26 205 254 456 1.04e-36 134
Msa0949600 MtrunA17_Chr3g0106231 37.056 197 116 4 26 218 261 453 1.52e-36 133
Msa0949600 MtrunA17_Chr6g0454291 36.082 194 115 3 25 213 284 473 1.73e-36 133
Msa0949600 MtrunA17_Chr6g0454181 36.598 194 114 3 25 213 287 476 2.21e-36 133
Msa0949600 MtrunA17_Chr7g0243851 37.321 209 113 3 26 216 234 442 3.64e-36 132
Msa0949600 MtrunA17_Chr7g0243951 36.538 208 115 3 26 216 276 483 4.08e-36 132
Msa0949600 MtrunA17_Chr5g0431361 34.848 198 119 4 26 217 261 454 4.41e-36 132
Msa0949600 MtrunA17_Chr6g0453951 35.052 194 117 3 25 213 334 523 4.63e-36 132
Msa0949600 MtrunA17_Chr8g0350881 36.364 209 109 5 25 209 265 473 4.81e-36 132
Msa0949600 MtrunA17_Chr8g0334851 38.191 199 105 4 25 205 260 458 5.07e-36 132
Msa0949600 MtrunA17_Chr5g0401851 36.538 208 115 3 26 216 276 483 5.28e-36 132
Msa0949600 MtrunA17_Chr5g0440421 35.193 233 128 7 4 218 268 495 8.32e-36 131
Msa0949600 MtrunA17_Chr3g0118661 36.139 202 116 4 25 219 287 482 8.39e-36 131
Msa0949600 MtrunA17_Chr4g0011051 36.232 207 113 5 26 213 278 484 8.96e-36 131
Msa0949600 MtrunA17_Chr3g0079711 37.705 183 93 4 52 213 3 185 1.49e-35 124
Msa0949600 MtrunA17_Chr5g0431441 35.294 204 110 4 26 218 275 467 1.68e-35 130
Msa0949600 MtrunA17_Chr7g0265041 38.222 225 113 10 16 218 270 490 2.11e-35 130
Msa0949600 MtrunA17_Chr7g0243611 42.949 156 81 2 26 173 136 291 2.77e-35 126
Msa0949600 MtrunA17_Chr6g0454261 35.025 197 113 4 25 213 287 476 2.84e-35 130
Msa0949600 MtrunA17_Chr4g0072761 36.316 190 117 2 25 213 263 449 4.85e-35 129
Msa0949600 MtrunA17_Chr5g0416741 33.188 229 137 3 4 216 255 483 5.73e-35 129
Msa0949600 MtrunA17_Chr5g0431401 35.678 199 116 4 26 217 256 449 6.40e-35 128
Msa0949600 MtrunA17_Chr7g0265111 35.468 203 112 5 26 209 306 508 8.03e-35 129
Msa0949600 MtrunA17_Chr5g0431421 34.158 202 123 4 21 216 251 448 8.28e-35 128
Msa0949600 MtrunA17_Chr4g0044481 48.507 134 64 3 25 153 264 397 8.88e-35 127
Msa0949600 MtrunA17_Chr5g0429711 35.714 196 116 5 17 205 258 450 1.13e-34 128
Msa0949600 MtrunA17_Chr5g0431371 33.962 212 130 4 12 217 242 449 1.15e-34 127
Msa0949600 MtrunA17_Chr8g0355221 36.792 212 116 3 23 216 275 486 2.89e-34 127
Msa0949600 MtrunA17_Chr1g0207881 45.113 133 69 2 84 213 250 381 3.45e-34 125
Msa0949600 MtrunA17_Chr5g0442561 33.171 205 110 4 26 205 259 461 1.08e-33 125
Msa0949600 MtrunA17_Chr6g0454171 35.052 194 101 4 25 213 133 306 1.22e-33 122
Msa0949600 MtrunA17_Chr6g0463891 36.190 210 113 4 26 216 277 484 1.50e-33 125
Msa0949600 MtrunA17_Chr4g0072771 35.263 190 119 2 25 213 276 462 1.53e-33 125
Msa0949600 MtrunA17_Chr4g0032331 38.202 178 97 4 25 193 255 428 2.58e-33 124
Msa0949600 MtrunA17_Chr5g0448551 44.776 134 70 2 25 154 259 392 3.31e-33 124
Msa0949600 MtrunA17_Chr2g0307961 37.297 185 112 4 28 210 280 462 3.68e-33 124
Msa0949600 MtrunA17_Chr8g0355011 33.679 193 118 4 26 213 171 358 5.13e-33 122
Msa0949600 MtrunA17_Chr5g0429681 37.563 197 104 6 23 205 297 488 5.18e-33 124
Msa0949600 MtrunA17_Chr5g0442521 32.093 215 118 5 25 213 260 472 5.79e-33 123
Msa0949600 MtrunA17_Chr5g0442541 33.495 206 110 4 25 205 251 454 9.69e-33 123
Msa0949600 MtrunA17_Chr7g0218311 34.884 215 117 5 25 216 269 483 1.61e-32 122
Msa0949600 MtrunA17_Chr2g0329111 34.101 217 121 5 21 215 262 478 1.62e-32 122
Msa0949600 MtrunA17_Chr1g0165701 35.714 210 119 3 23 216 274 483 1.69e-32 122
Msa0949600 MtrunA17_Chr2g0294931 33.937 221 123 5 21 218 263 483 7.89e-32 120
Msa0949600 MtrunA17_Chr7g0243811 44.853 136 67 2 26 153 240 375 9.99e-32 119
Msa0949600 MtrunA17_Chr6g0454371 32.597 181 107 4 48 219 1 175 1.24e-31 113
Msa0949600 MtrunA17_Chr8g0374931 33.043 230 130 6 2 208 245 473 4.42e-31 118
Msa0949600 MtrunA17_Chr3g0118751 31.651 218 116 4 6 218 257 446 7.41e-31 117
Msa0949600 MtrunA17_Chr2g0294921 31.250 240 141 6 2 218 394 632 7.85e-31 119
Msa0949600 MtrunA17_Chr5g0428081 32.083 240 139 6 2 218 243 481 1.15e-30 117
Msa0949600 MtrunA17_Chr5g0442511 32.195 205 112 4 26 205 280 482 1.17e-30 117
Msa0949600 MtrunA17_Chr2g0294941 38.202 178 88 5 21 176 161 338 1.53e-30 115
Msa0949600 MtrunA17_Chr5g0442601 32.524 206 112 4 25 205 661 864 1.68e-30 118
Msa0949600 MtrunA17_Chr5g0442601 35.484 155 78 4 19 151 182 336 2.51e-24 100
Msa0949600 MtrunA17_Chr5g0403641 32.057 209 119 4 24 209 287 495 1.75e-30 117
Msa0949600 MtrunA17_Chr5g0442491 31.707 205 113 4 26 205 261 463 5.48e-30 115
Msa0949600 MtrunA17_Chr5g0442581 31.604 212 118 4 19 205 256 465 6.88e-30 115
Msa0949600 MtrunA17_Chr6g0454351 34.104 173 101 3 48 213 295 461 1.57e-29 114
Msa0949600 MtrunA17_Chr5g0419761 36.946 203 100 8 25 202 273 472 1.68e-29 114
Msa0949600 MtrunA17_Chr2g0302991 31.364 220 129 5 19 218 247 464 5.02e-29 112
Msa0949600 MtrunA17_Chr5g0410941 34.272 213 113 6 26 213 276 486 5.79e-29 112
Msa0949600 MtrunA17_Chr8g0367221 36.723 177 102 5 27 194 1547 1722 7.43e-29 113
Msa0949600 MtrunA17_Chr8g0367221 36.410 195 103 7 20 194 252 445 2.26e-28 112
Msa0949600 MtrunA17_Chr8g0367221 36.723 177 102 6 27 194 1057 1232 5.03e-28 111
Msa0949600 MtrunA17_Chr5g0409591 35.233 193 101 4 17 188 266 455 8.52e-29 112
Msa0949600 MtrunA17_Chr2g0302961 29.091 220 134 5 19 218 250 467 2.04e-28 111
Msa0949600 MtrunA17_Chr8g0369341 30.732 205 129 5 25 218 268 470 3.84e-28 110
Msa0949600 MtrunA17_Chr4g0029131 35.149 202 113 6 14 197 239 440 5.54e-28 110
Msa0949600 MtrunA17_Chr7g0241801 34.973 183 111 6 18 197 233 410 1.47e-27 108
Msa0949600 MtrunA17_Chr4g0029151 34.158 202 115 5 14 197 247 448 3.45e-27 107
Msa0949600 MtrunA17_Chr8g0357361 42.361 144 78 3 21 160 113 255 4.37e-27 104
Msa0949600 MtrunA17_Chr7g0241781 35.870 184 108 7 18 197 233 410 5.04e-27 107
Msa0949600 MtrunA17_Chr5g0416821 30.303 231 129 5 4 216 257 473 5.69e-27 107
Msa0949600 MtrunA17_Chr8g0361411 34.500 200 113 5 28 216 261 453 7.30e-27 106
Msa0949600 MtrunA17_Chr5g0420801 33.171 205 124 5 25 218 258 460 1.07e-26 106
Msa0949600 MtrunA17_Chr1g0196851 36.216 185 104 6 27 197 296 480 1.34e-26 106
Msa0949600 MtrunA17_Chr7g0231631 31.602 231 124 5 4 216 45 259 1.81e-26 102
Msa0949600 MtrunA17_Chr7g0232351 42.222 135 60 4 14 130 244 378 2.14e-26 104
Msa0949600 MtrunA17_Chr8g0336261 38.406 138 76 3 48 180 1 134 3.62e-26 98.6
Msa0949600 MtrunA17_Chr4g0066141 36.842 152 82 4 79 216 200 351 1.11e-25 102
Msa0949600 MtrunA17_Chr6g0466841 32.653 196 122 6 28 218 272 462 6.23e-25 101
Msa0949600 MtrunA17_Chr4g0042891 36.139 202 113 7 25 213 264 462 7.13e-25 101
Msa0949600 MtrunA17_Chr4g0042931 34.615 208 105 7 27 213 263 460 1.13e-24 100
Msa0949600 MtrunA17_Chr5g0431431 41.135 141 73 4 13 148 189 324 1.24e-24 99.8
Msa0949600 MtrunA17_Chr4g0069611 33.673 196 120 6 28 218 269 459 2.26e-24 100
Msa0949600 MtrunA17_Chr6g0466831 32.653 196 122 6 28 218 272 462 2.59e-24 99.8
Msa0949600 MtrunA17_Chr8g0336251 31.500 200 122 5 26 218 269 460 3.01e-24 99.8
Msa0949600 MtrunA17_Chr8g0336321 31.500 200 122 5 26 218 269 460 4.26e-24 99.4
Msa0949600 MtrunA17_Chr2g0278721 31.959 194 122 6 28 216 785 973 4.42e-24 99.8
Msa0949600 MtrunA17_Chr2g0278721 30.769 195 127 4 28 218 274 464 6.65e-21 90.5
Msa0949600 MtrunA17_Chr6g0454251 45.045 111 56 2 25 130 284 394 1.04e-23 97.4
Msa0949600 MtrunA17_Chr7g0250021 52.273 88 40 1 2 89 242 327 1.14e-23 96.7
Msa0949600 MtrunA17_Chr5g0427571 34.132 167 102 4 26 185 103 268 1.25e-23 95.9
Msa0949600 MtrunA17_Chr2g0283041 32.812 192 115 5 14 191 240 431 1.33e-23 97.8
Msa0949600 MtrunA17_Chr8g0337381 37.500 128 66 2 91 212 2 121 1.37e-23 91.7
Msa0949600 MtrunA17_Chr3g0092031 30.612 196 126 6 28 218 6 196 2.09e-23 93.2
Msa0949600 MtrunA17_Chr2g0302851 31.553 206 131 6 18 218 260 460 3.39e-22 94.0
Msa0949600 MtrunA17_Chr4g0039881 30.275 218 139 7 6 218 227 436 6.15e-21 90.1
Msa0949600 MtrunA17_Chr4g0040691 32.386 176 110 4 28 194 261 436 2.55e-20 88.6
Msa0949600 MtrunA17_Chr2g0319731 35.955 178 103 6 28 194 276 453 8.69e-20 87.0
Msa0949600 MtrunA17_Chr2g0319791 35.000 180 106 6 26 194 257 436 1.59e-19 86.3
Msa0949600 MtrunA17_Chr6g0464091 37.600 125 74 2 27 147 278 402 2.40e-19 85.9
Msa0949600 MtrunA17_Chr2g0278741 29.744 195 129 4 28 218 356 546 3.90e-19 85.1
Msa0949600 MtrunA17_Chr6g0454231 33.846 130 79 3 86 213 91 215 1.24e-18 83.6
Msa0949600 MtrunA17_Chr2g0319761 35.088 171 100 6 28 187 259 429 1.40e-18 83.6
Msa0949600 MtrunA17_Chr7g0243731 47.500 80 41 1 84 162 1 80 1.47e-18 77.0
Msa0949600 MtrunA17_Chr6g0482061 30.435 207 120 5 22 211 275 474 3.80e-18 82.4
Msa0949600 MtrunA17_Chr4g0040711 31.658 199 121 5 28 211 261 459 3.83e-18 82.4
Msa0949600 MtrunA17_Chr2g0319751 32.609 184 113 6 26 198 734 917 1.49e-17 80.9
Msa0949600 MtrunA17_Chr2g0319751 28.492 179 103 7 26 198 257 416 1.44e-15 75.1
Msa0949600 MtrunA17_Chr2g0319801 34.831 178 105 6 28 194 259 436 3.27e-17 79.7
Msa0949600 MtrunA17_Chr2g0321331 31.868 182 97 6 23 194 81 245 6.56e-15 71.6
Msa0949600 MtrunA17_Chr4g0029161 29.500 200 99 7 14 197 239 412 2.09e-14 71.2
Msa0949600 MtrunA17_Chr7g0250011 53.061 49 23 0 132 180 1 49 5.27e-12 58.9
Msa0949600 MtrunA17_Chr8g0334841 52.459 61 27 1 22 82 84 142 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0949600 AT1G05680.1 57.604 217 91 1 1 216 236 452 4.05e-85 259
Msa0949600 AT1G05675.1 56.682 217 93 1 1 216 236 452 3.23e-84 257
Msa0949600 AT2G31750.1 53.394 221 100 2 1 218 236 456 1.86e-80 248
Msa0949600 AT2G31750.2 53.394 221 100 2 1 218 236 456 5.39e-80 248
Msa0949600 AT2G31790.1 50.226 221 104 3 2 217 238 457 1.57e-75 235
Msa0949600 AT2G43840.1 51.364 220 101 4 1 216 229 446 8.44e-73 228
Msa0949600 AT2G43840.2 51.364 220 101 4 1 216 229 446 9.30e-73 228
Msa0949600 AT1G24100.1 48.624 218 110 2 3 218 243 460 1.40e-72 228
Msa0949600 AT2G43820.1 52.055 219 97 5 1 214 229 444 2.42e-72 226
Msa0949600 AT4G15480.1 47.343 207 99 3 21 217 273 479 1.83e-56 186
Msa0949600 AT3G21560.1 45.972 211 102 4 15 217 267 473 1.01e-55 185
Msa0949600 AT1G05560.1 42.723 213 103 5 16 213 240 448 1.26e-52 176
Msa0949600 AT1G05560.2 42.723 213 103 5 16 213 290 498 1.96e-52 176
Msa0949600 AT4G15490.1 45.366 205 106 3 17 216 263 466 6.13e-52 174
Msa0949600 AT4G15550.1 43.842 203 98 4 26 213 269 470 3.05e-51 172
Msa0949600 AT1G05530.1 40.611 229 121 5 2 216 227 454 5.82e-51 171
Msa0949600 AT4G14090.1 44.041 193 102 3 27 213 260 452 4.48e-49 166
Msa0949600 AT4G15500.1 41.905 210 108 5 17 217 259 463 2.81e-47 162
Msa0949600 AT2G15490.3 42.365 203 106 4 25 216 275 477 3.22e-47 162
Msa0949600 AT2G15490.1 41.748 206 106 4 25 216 275 480 1.23e-46 160
Msa0949600 AT2G15480.1 39.901 203 111 4 25 216 278 480 1.98e-44 155
Msa0949600 AT2G23260.1 38.342 193 116 2 25 214 259 451 8.73e-44 152
Msa0949600 AT1G01420.1 44.279 201 89 7 18 199 250 446 1.20e-43 152
Msa0949600 AT1G01420.2 41.315 213 105 6 18 211 253 464 1.38e-43 152
Msa0949600 AT2G15480.2 39.437 213 108 5 25 216 278 490 4.69e-43 151
Msa0949600 AT5G05870.1 41.627 209 110 5 16 217 252 455 8.70e-43 150
Msa0949600 AT4G01070.1 39.901 203 104 4 25 209 258 460 1.48e-42 150
Msa0949600 AT2G30140.1 40.488 205 112 6 19 219 256 454 4.17e-42 148
Msa0949600 AT2G30140.2 40.488 205 112 6 19 219 255 453 4.69e-42 148
Msa0949600 AT2G36750.1 38.136 236 126 6 2 218 251 485 7.89e-42 148
Msa0949600 AT5G17050.1 35.821 201 123 3 17 216 261 456 9.38e-42 147
Msa0949600 AT1G22380.1 36.893 206 117 5 1 198 261 461 1.01e-41 147
Msa0949600 AT3G11340.1 38.693 199 111 4 25 216 250 444 1.88e-41 146
Msa0949600 AT2G23250.1 36.224 196 120 3 23 214 239 433 2.79e-41 145
Msa0949600 AT2G36970.1 39.286 196 111 3 25 214 275 468 3.57e-41 146
Msa0949600 AT1G22360.1 37.436 195 112 4 25 213 284 474 3.98e-41 146
Msa0949600 AT2G36800.1 38.389 211 111 5 18 209 270 480 8.95e-41 145
Msa0949600 AT1G22400.1 36.735 196 114 4 25 214 288 479 9.03e-41 145
Msa0949600 AT5G38040.1 40.299 201 108 4 23 216 254 449 1.59e-40 144
Msa0949600 AT3G46670.1 38.191 199 112 3 25 216 254 448 1.74e-40 144
Msa0949600 AT1G78270.1 37.963 216 122 7 11 219 273 483 3.03e-40 144
Msa0949600 AT2G36780.1 37.559 213 114 5 25 218 278 490 5.42e-40 143
Msa0949600 AT2G36760.1 41.667 204 100 4 25 209 278 481 8.11e-40 142
Msa0949600 AT5G59590.1 37.688 199 113 3 25 216 255 449 1.19e-39 141
Msa0949600 AT3G55700.1 40.816 196 105 4 28 216 259 450 2.70e-39 140
Msa0949600 AT4G34131.1 39.000 200 110 5 25 213 278 476 3.05e-39 141
Msa0949600 AT5G38010.1 39.904 208 112 5 16 216 252 453 3.05e-39 140
Msa0949600 AT4G36770.1 40.102 197 95 6 25 200 253 447 3.08e-39 140
Msa0949600 AT2G28080.1 37.879 198 113 5 25 216 278 471 3.43e-39 140
Msa0949600 AT3G46660.1 38.776 196 109 4 25 213 261 452 6.14e-39 139
Msa0949600 AT5G59580.1 38.191 199 112 4 25 216 253 447 7.39e-39 139
Msa0949600 AT5G05860.1 40.513 195 105 4 23 210 251 441 1.28e-38 139
Msa0949600 AT4G34138.1 37.118 229 126 8 2 217 256 479 3.11e-38 138
Msa0949600 AT1G30530.1 35.385 195 120 3 17 210 255 444 3.19e-38 137
Msa0949600 AT2G30150.1 36.275 204 122 5 15 213 233 433 3.34e-38 137
Msa0949600 AT2G36770.1 37.089 213 115 5 25 218 278 490 3.98e-38 138
Msa0949600 AT3G02100.1 38.144 194 112 2 20 213 271 456 4.23e-38 137
Msa0949600 AT2G30150.2 36.275 204 122 5 15 213 249 449 4.50e-38 137
Msa0949600 AT3G16520.3 40.104 192 101 5 25 205 260 448 4.66e-38 137
Msa0949600 AT1G22340.1 35.714 196 115 4 25 213 287 478 4.74e-38 138
Msa0949600 AT5G17040.2 34.359 195 122 3 17 210 142 331 5.07e-38 135
Msa0949600 AT4G34135.1 38.725 204 114 4 25 217 279 482 5.47e-38 137
Msa0949600 AT3G53160.1 36.538 208 105 7 25 209 272 475 2.42e-37 136
Msa0949600 AT5G17040.1 34.359 195 122 3 17 210 244 433 2.55e-37 135
Msa0949600 AT2G29730.1 35.897 195 117 4 26 213 266 459 5.10e-37 135
Msa0949600 AT3G16520.2 39.894 188 99 5 25 201 260 444 5.95e-37 134
Msa0949600 AT3G16520.1 39.894 188 99 5 25 201 260 444 7.54e-37 134
Msa0949600 AT5G05880.1 36.364 209 121 5 16 217 246 449 1.13e-36 133
Msa0949600 AT5G17030.1 31.863 204 133 3 7 209 250 448 1.14e-36 134
Msa0949600 AT1G22360.2 35.897 195 103 4 25 213 284 462 1.88e-36 133
Msa0949600 AT5G26310.1 36.408 206 106 5 28 209 256 460 1.95e-36 133
Msa0949600 AT1G10400.1 38.660 194 110 6 26 213 269 459 1.97e-36 133
Msa0949600 AT3G55710.1 38.806 201 112 5 23 216 258 454 1.34e-35 130
Msa0949600 AT1G22370.1 35.897 195 115 4 25 213 112 302 2.38e-35 127
Msa0949600 AT3G50740.1 37.619 210 105 7 25 209 258 466 3.26e-35 130
Msa0949600 AT5G66690.1 36.058 208 108 6 26 209 254 460 4.06e-35 130
Msa0949600 AT3G46680.1 36.224 196 114 3 25 213 255 446 8.55e-35 128
Msa0949600 AT3G21750.1 34.884 215 109 5 26 213 255 465 1.49e-34 128
Msa0949600 AT3G46720.1 38.021 192 115 1 25 216 253 440 2.51e-34 127
Msa0949600 AT1G22370.2 35.897 195 115 4 25 213 282 472 3.32e-34 127
Msa0949600 AT2G36790.1 36.364 220 121 5 18 218 270 489 4.11e-34 127
Msa0949600 AT5G05900.1 36.548 197 118 3 23 216 258 450 4.92e-34 126
Msa0949600 AT3G22250.1 39.766 171 95 4 25 189 273 441 6.44e-34 126
Msa0949600 AT1G01390.1 38.049 205 109 3 25 211 258 462 8.00e-34 126
Msa0949600 AT4G15260.1 32.547 212 117 4 26 213 142 351 8.50e-34 124
Msa0949600 AT4G15280.1 33.175 211 116 5 26 213 262 470 1.01e-33 126
Msa0949600 AT1G01390.2 38.049 205 109 3 25 211 275 479 1.09e-33 126
Msa0949600 AT4G15280.2 33.175 211 116 5 26 213 294 502 1.21e-33 126
Msa0949600 AT2G18560.1 36.111 216 118 7 15 212 159 372 1.27e-33 124
Msa0949600 AT1G07260.1 33.945 218 129 5 7 213 255 468 1.80e-33 125
Msa0949600 AT3G46690.1 36.181 199 116 3 25 216 255 449 3.40e-33 124
Msa0949600 AT3G46650.1 35.533 197 112 3 25 212 238 428 5.54e-33 123
Msa0949600 AT3G21800.1 34.579 214 110 5 26 213 263 472 5.95e-33 124
Msa0949600 AT5G12890.1 37.915 211 113 7 21 213 268 478 7.14e-33 124
Msa0949600 AT3G46700.1 36.634 202 111 5 25 216 250 444 7.81e-33 123
Msa0949600 AT2G29710.1 34.184 196 120 4 26 213 265 459 1.11e-32 123
Msa0949600 AT3G21790.1 33.486 218 117 5 26 218 266 480 1.28e-32 123
Msa0949600 AT2G16890.2 37.500 192 112 5 26 209 269 460 1.41e-32 123
Msa0949600 AT5G05890.1 33.971 209 126 5 16 217 250 453 7.96e-32 120
Msa0949600 AT2G29740.1 33.990 203 119 5 26 216 275 474 1.44e-31 120
Msa0949600 AT5G49690.1 37.433 187 104 6 27 210 266 442 3.16e-31 119
Msa0949600 AT1G73880.1 32.500 200 126 3 21 213 266 463 3.28e-31 119
Msa0949600 AT5G03490.1 35.602 191 116 5 26 213 273 459 3.95e-31 119
Msa0949600 AT1G07250.1 32.673 202 123 4 26 216 273 472 5.31e-31 119
Msa0949600 AT2G18570.1 38.095 189 93 7 20 188 254 438 5.97e-31 118
Msa0949600 AT3G21760.1 30.493 223 130 4 14 213 257 477 1.51e-30 117
Msa0949600 AT2G29750.1 33.005 203 120 6 26 216 275 473 2.44e-30 117
Msa0949600 AT5G14860.1 36.702 188 111 5 26 205 276 463 2.93e-30 117
Msa0949600 AT2G26480.1 33.500 200 121 4 25 216 250 445 5.58e-30 115
Msa0949600 AT3G53150.1 33.953 215 112 7 25 209 288 502 1.80e-29 114
Msa0949600 AT1G07240.1 31.527 203 122 5 26 213 272 472 3.77e-29 113
Msa0949600 AT3G21780.1 32.227 211 118 4 26 213 257 465 9.89e-29 112
Msa0949600 AT1G51210.1 34.857 175 108 4 16 188 259 429 2.41e-27 108
Msa0949600 AT5G65550.1 35.928 167 101 5 27 188 269 434 8.27e-26 104
Msa0949600 AT2G16890.3 38.298 141 83 3 26 162 269 409 9.26e-26 103
Msa0949600 AT4G27570.1 33.000 200 121 5 26 216 248 443 2.15e-25 103
Msa0949600 AT4G27560.1 35.227 176 105 3 26 192 248 423 4.94e-25 102
Msa0949600 AT5G54010.1 32.161 199 122 4 27 216 249 443 1.81e-24 100
Msa0949600 AT1G06000.1 33.498 203 119 5 28 216 233 433 3.02e-24 99.8
Msa0949600 AT5G53990.1 32.323 198 119 4 27 209 243 440 6.91e-24 99.0
Msa0949600 AT5G37950.2 39.552 134 68 3 13 134 209 341 1.10e-22 94.4
Msa0949600 AT5G37950.1 39.552 134 68 3 13 134 215 347 1.19e-22 94.4
Msa0949600 AT5G54060.1 32.000 200 123 6 27 213 267 466 3.05e-22 94.4
Msa0949600 AT1G50580.1 32.663 199 121 4 27 216 244 438 4.54e-22 93.6
Msa0949600 AT1G64910.1 31.638 177 112 4 27 194 243 419 5.28e-22 93.6
Msa0949600 AT2G22590.1 29.000 200 128 6 27 217 273 467 1.08e-21 92.8
Msa0949600 AT3G29630.1 33.143 175 107 4 28 192 246 420 2.78e-20 88.6
Msa0949600 AT3G29630.2 33.143 175 107 4 28 192 220 394 3.24e-20 88.2
Msa0949600 AT1G64920.1 30.387 181 109 4 27 192 243 421 1.92e-18 83.6
Msa0949600 AT2G22930.1 29.064 203 135 3 18 211 234 436 2.91e-18 82.8
Msa0949600 AT4G09500.1 30.357 168 108 3 36 194 227 394 4.74e-17 79.3
Msa0949600 AT4G09500.2 30.357 168 108 3 36 194 252 419 5.37e-17 79.3
Msa0949600 AT4G01070.2 44.944 89 33 2 25 97 258 346 4.41e-15 73.2

Find 38 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGCAAAATTCTGTATT+TGG 0.145617 6_3:+36341876 None:intergenic
TGCTTTGAAATGGAAGAATT+TGG 0.190258 6_3:-36341373 Msa0949600:CDS
ATCAGTGCCATCTATGTTAT+TGG 0.224424 6_3:-36341946 None:intergenic
TATTGCTGATGTTTGGAAAA+TGG 0.261109 6_3:-36341502 Msa0949600:CDS
ATAGTGAAAGTTATTTCTTA+TGG 0.261193 6_3:-36341749 Msa0949600:CDS
GAAATAATTGAGACTGAAAA+AGG 0.300168 6_3:-36341414 Msa0949600:CDS
CAAACACAAGAACTAGCTTT+AGG 0.323770 6_3:-36341780 Msa0949600:CDS
TAAAGAATTTGTGGCTGCTT+TGG 0.335259 6_3:-36341307 Msa0949600:CDS
CAAAGCTTATTGCTGATGTT+TGG 0.347190 6_3:-36341509 Msa0949600:CDS
TAGTGAAAGTTATTTCTTAT+GGG 0.350163 6_3:-36341748 Msa0949600:CDS
CTCAAAGATGACAAAGAATA+TGG 0.353363 6_3:-36341915 Msa0949600:CDS
GATGATTCCACAAACCCTTT+TGG 0.355174 6_3:+36341696 None:intergenic
CATTGATTGCAATGCCGCTT+TGG 0.361290 6_3:-36341551 Msa0949600:CDS
GTGTTGACACATGAAGCTTT+AGG 0.361905 6_3:-36341633 Msa0949600:CDS
GCTTCATTTGGTAGCATGGC+TGG 0.376902 6_3:-36341816 Msa0949600:CDS
TCAAAATATTAAAGAATTTG+TGG 0.384193 6_3:-36341316 Msa0949600:CDS
TCAGTTGTGTATGCTTCATT+TGG 0.388256 6_3:-36341828 Msa0949600:CDS
ATTGCTGATGTTTGGAAAAT+GGG 0.391013 6_3:-36341501 Msa0949600:CDS
AACAATTAAGAAATGTATAA+AGG 0.403764 6_3:-36341436 Msa0949600:CDS
GCATACACAACTGAACCTTT+TGG 0.421387 6_3:+36341837 None:intergenic
TAAACTTCCAAAAGGGTTTG+TGG 0.447107 6_3:-36341703 Msa0949600:CDS
GATCAAAGTAAACTTCCAAA+AGG 0.466021 6_3:-36341711 Msa0949600:CDS
TTTGTGGAATCATCAAAGAA+AGG 0.469200 6_3:-36341687 Msa0949600:CDS
CAAAGCGGCATTGCAATCAA+TGG 0.496676 6_3:+36341552 None:intergenic
ACGTTGGAAGCTTTGAGCAT+TGG 0.504703 6_3:-36341579 Msa0949600:CDS
CTTTGCATTCGTAACTTGAT+CGG 0.507042 6_3:+36341527 None:intergenic
GTATGCTTCATTTGGTAGCA+TGG 0.507185 6_3:-36341820 Msa0949600:CDS
GAAATGGAAGAATTTGGCTA+AGG 0.509882 6_3:-36341367 Msa0949600:CDS
ATCAAAGTAAACTTCCAAAA+GGG 0.510130 6_3:-36341710 Msa0949600:CDS
TGGCTGAATGATAAGCCAAA+AGG 0.522568 6_3:-36341852 Msa0949600:CDS
GCTAAGGATTCTGTTGATGA+GGG 0.562446 6_3:-36341351 Msa0949600:CDS
GGCTAAGGATTCTGTTGATG+AGG 0.567753 6_3:-36341352 Msa0949600:CDS
AAGGATTCTGTTGATGAGGG+TGG 0.610303 6_3:-36341348 Msa0949600:CDS
ATTCTGTATTTGGATCTGAA+AGG 0.610725 6_3:+36341886 None:intergenic
TGTGTCAACACTAGTAGTTG+TGG 0.636708 6_3:+36341645 None:intergenic
TTGTGGTTGGAACTCGACGT+TGG 0.656712 6_3:-36341595 Msa0949600:CDS
AGAAAGGTTTAATAGTGACA+TGG 0.676362 6_3:-36341671 Msa0949600:CDS
GTAACTTGATCGGTCCAAAG+CGG 0.716923 6_3:+36341537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAAGAAATGTATAA+AGG - chr6_3:36341793-36341812 Msa0949600:CDS 15.0%
!! TCAAAATATTAAAGAATTTG+TGG - chr6_3:36341913-36341932 Msa0949600:CDS 15.0%
!!! ATAGTGAAAGTTATTTCTTA+TGG - chr6_3:36341480-36341499 Msa0949600:CDS 20.0%
!!! TAGTGAAAGTTATTTCTTAT+GGG - chr6_3:36341481-36341500 Msa0949600:CDS 20.0%
!!! TTAAGAAAAATGCTTTGAAA+TGG - chr6_3:36341846-36341865 Msa0949600:CDS 20.0%
! TTGATGCAAAATTCTGTATT+TGG + chr6_3:36341356-36341375 None:intergenic 25.0%
!! ATACAGAATTTTGCATCAAA+TGG - chr6_3:36341357-36341376 Msa0949600:CDS 25.0%
! ATCAAAGTAAACTTCCAAAA+GGG - chr6_3:36341519-36341538 Msa0949600:CDS 25.0%
! GAAATAATTGAGACTGAAAA+AGG - chr6_3:36341815-36341834 Msa0949600:CDS 25.0%
CTCAAAGATGACAAAGAATA+TGG - chr6_3:36341314-36341333 Msa0949600:CDS 30.0%
ATTCTGTATTTGGATCTGAA+AGG + chr6_3:36341346-36341365 None:intergenic 30.0%
GATCAAAGTAAACTTCCAAA+AGG - chr6_3:36341518-36341537 Msa0949600:CDS 30.0%
TTTGTGGAATCATCAAAGAA+AGG - chr6_3:36341542-36341561 Msa0949600:CDS 30.0%
AGAAAGGTTTAATAGTGACA+TGG - chr6_3:36341558-36341577 Msa0949600:CDS 30.0%
TATTGCTGATGTTTGGAAAA+TGG - chr6_3:36341727-36341746 Msa0949600:CDS 30.0%
ATTGCTGATGTTTGGAAAAT+GGG - chr6_3:36341728-36341747 Msa0949600:CDS 30.0%
!! TGCTTTGAAATGGAAGAATT+TGG - chr6_3:36341856-36341875 Msa0949600:CDS 30.0%
TCAGTTGTGTATGCTTCATT+TGG - chr6_3:36341401-36341420 Msa0949600:CDS 35.0%
!! CAAACACAAGAACTAGCTTT+AGG - chr6_3:36341449-36341468 Msa0949600:CDS 35.0%
TAAACTTCCAAAAGGGTTTG+TGG - chr6_3:36341526-36341545 Msa0949600:CDS 35.0%
!! GGTTGTTTTGTTACACATTG+TGG - chr6_3:36341617-36341636 Msa0949600:CDS 35.0%
!! GTTTTGTTACACATTGTGGT+TGG - chr6_3:36341621-36341640 Msa0949600:CDS 35.0%
CTTTGCATTCGTAACTTGAT+CGG + chr6_3:36341705-36341724 None:intergenic 35.0%
CAAAGCTTATTGCTGATGTT+TGG - chr6_3:36341720-36341739 Msa0949600:CDS 35.0%
GAAATGGAAGAATTTGGCTA+AGG - chr6_3:36341862-36341881 Msa0949600:CDS 35.0%
TAAAGAATTTGTGGCTGCTT+TGG - chr6_3:36341922-36341941 Msa0949600:CDS 35.0%
TGGCTGAATGATAAGCCAAA+AGG - chr6_3:36341377-36341396 Msa0949600:CDS 40.0%
! GCATACACAACTGAACCTTT+TGG + chr6_3:36341395-36341414 None:intergenic 40.0%
! GTATGCTTCATTTGGTAGCA+TGG - chr6_3:36341409-36341428 Msa0949600:CDS 40.0%
! GATGATTCCACAAACCCTTT+TGG + chr6_3:36341536-36341555 None:intergenic 40.0%
TGTGTCAACACTAGTAGTTG+TGG + chr6_3:36341587-36341606 None:intergenic 40.0%
! GTGTTGACACATGAAGCTTT+AGG - chr6_3:36341596-36341615 Msa0949600:CDS 40.0%
! GCTAAGGATTCTGTTGATGA+GGG - chr6_3:36341878-36341897 Msa0949600:CDS 40.0%
!! ACGTTGGAAGCTTTGAGCAT+TGG - chr6_3:36341650-36341669 Msa0949600:CDS 45.0%
CAAAGCGGCATTGCAATCAA+TGG + chr6_3:36341680-36341699 None:intergenic 45.0%
! CATTGATTGCAATGCCGCTT+TGG - chr6_3:36341678-36341697 Msa0949600:CDS 45.0%
GTAACTTGATCGGTCCAAAG+CGG + chr6_3:36341695-36341714 None:intergenic 45.0%
GGCTAAGGATTCTGTTGATG+AGG - chr6_3:36341877-36341896 Msa0949600:CDS 45.0%
! AAGGATTCTGTTGATGAGGG+TGG - chr6_3:36341881-36341900 Msa0949600:CDS 45.0%
! GCTTCATTTGGTAGCATGGC+TGG - chr6_3:36341413-36341432 Msa0949600:CDS 50.0%
TTGTGGTTGGAACTCGACGT+TGG - chr6_3:36341634-36341653 Msa0949600:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 36341296 36341955 36341296 ID=Msa0949600;Name=Msa0949600
chr6_3 mRNA 36341296 36341955 36341296 ID=Msa0949600-mRNA-1;Parent=Msa0949600;Name=Msa0949600-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|219
chr6_3 exon 36341296 36341955 36341296 ID=Msa0949600-mRNA-1:exon:9004;Parent=Msa0949600-mRNA-1
chr6_3 CDS 36341296 36341955 36341296 ID=Msa0949600-mRNA-1:cds;Parent=Msa0949600-mRNA-1
Gene Sequence

>Msa0949600

ATGTTATTGGACAAAAGACTCAAAGATGACAAAGAATATGGTGTTAGCCTTTCAGATCCAAATACAGAATTTTGCATCAAATGGCTGAATGATAAGCCAAAAGGTTCAGTTGTGTATGCTTCATTTGGTAGCATGGCTGGTCTCAATGAAGAGCAAACACAAGAACTAGCTTTAGGATTAAAAGATAGTGAAAGTTATTTCTTATGGGTTGTTAGAGAATGTGATCAAAGTAAACTTCCAAAAGGGTTTGTGGAATCATCAAAGAAAGGTTTAATAGTGACATGGTGTCCACAACTACTAGTGTTGACACATGAAGCTTTAGGTTGTTTTGTTACACATTGTGGTTGGAACTCGACGTTGGAAGCTTTGAGCATTGGTGTTCCATTGATTGCAATGCCGCTTTGGACCGATCAAGTTACGAATGCAAAGCTTATTGCTGATGTTTGGAAAATGGGAGTTAGAGCTGTTGCTGATGAGAAAGAGATTGTTAGAAGTGAAACAATTAAGAAATGTATAAAGGAAATAATTGAGACTGAAAAAGGAAATGAAATTAAGAAAAATGCTTTGAAATGGAAGAATTTGGCTAAGGATTCTGTTGATGAGGGTGGAAGATCTGATCAAAATATTAAAGAATTTGTGGCTGCTTTGGCTCAATGTTGA
Protein sequence

>Msa0949600

MLLDKRLKDDKEYGVSLSDPNTEFCIKWLNDKPKGSVVYASFGSMAGLNEEQTQELALGLKDSESYFLWVVRECDQSKLPKGFVESSKKGLIVTWCPQLLVLTHEALGCFVTHCGWNSTLEALSIGVPLIAMPLWTDQVTNAKLIADVWKMGVRAVADEKEIVRSETIKKCIKEIIETEKGNEIKKNALKWKNLAKDSVDEGGRSDQNIKEFVAALAQC*