AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453620 MtrunA17_Chr7g0244941 97.419 310 6 1 1 308 1 310 0.0 613
Msa1453620 MtrunA17_Chr7g0257051 32.184 174 106 2 127 296 54 219 8.23e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453620 AT2G38550.1 46.789 327 138 11 4 303 2 319 2.48e-80 247
Msa1453620 AT3G57280.1 28.931 159 102 3 146 296 57 212 5.71e-15 73.2

Find 107 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAAATTTACTCTCTTA+TGG 0.180959 tig0034810:+7901 None:intergenic
GATGGGTGTGGTTGAGTTTA+GGG 0.212767 tig0034810:+13450 None:intergenic
GATGATCTCAGCAAAGTTTC+TGG 0.226891 tig0034810:-11884 Msa1453620:CDS
AGATGGGTGTGGTTGAGTTT+AGG 0.238483 tig0034810:+13449 None:intergenic
CAAATCATGTCTTGCCTTAT+CGG 0.253536 tig0034810:+12015 None:intergenic
TTCCTTTCCTTTATGATAAC+AGG 0.269414 tig0034810:-10447 Msa1453620:CDS
CGGAAAATGCAGAGGAAGTT+TGG 0.270047 tig0034810:+13641 None:intergenic
CTGCGTGAGATCAGCATATT+AGG 0.305459 tig0034810:-9106 Msa1453620:CDS
GATGTTTCTCTTACCAAATA+AGG 0.308050 tig0034810:-7829 Msa1453620:three_prime_UTR
CAGGAAGCATTGCAGCAATA+AGG 0.309359 tig0034810:-10428 Msa1453620:CDS
GGGCGAAGAAAACGAGAGTT+TGG 0.320704 tig0034810:+13529 None:intergenic
GCCCTCTTCTCTTGCTTTGA+AGG 0.322787 tig0034810:-10334 Msa1453620:CDS
TTGCTGATGGTTAGGATTAG+TGG 0.332050 tig0034810:-8090 Msa1453620:three_prime_UTR
GCATTGCAGCAATAAGGTTT+GGG 0.336448 tig0034810:-10422 Msa1453620:CDS
TTAGAAGGTAAACCACAAAA+AGG 0.338660 tig0034810:-8392 Msa1453620:CDS
GAAACTCATCGAAGCCATTT+AGG 0.344874 tig0034810:+13499 None:intergenic
CTTCTTAGAATACACTTCAT+AGG 0.347106 tig0034810:+12084 None:intergenic
CAGCAAAGTTTCTGGAGTTC+GGG 0.348326 tig0034810:-11876 Msa1453620:CDS
TCAGCAAAGTTTCTGGAGTT+CGG 0.355747 tig0034810:-11877 Msa1453620:CDS
GAAAACGAGAGTTTGGGAAT+TGG 0.366535 tig0034810:+13536 None:intergenic
AGCATTGCAGCAATAAGGTT+TGG 0.368282 tig0034810:-10423 Msa1453620:CDS
AATCAAACAGGTTGGTTGTT+CGG 0.378634 tig0034810:+13621 None:intergenic
CGAAGCCATTTAGGTTGAAA+AGG 0.389526 tig0034810:+13508 None:intergenic
AATGCTTCCTGTTATCATAA+AGG 0.390887 tig0034810:+10440 None:intergenic
CCCTCTTCTCTTGCTTTGAA+GGG 0.393105 tig0034810:-10333 Msa1453620:CDS
CTTATTTCACTGCTTTGATC+AGG 0.394428 tig0034810:-8968 Msa1453620:intron
AACAATGGAATCAATGAAAG+AGG 0.408728 tig0034810:+13576 None:intergenic
CGGTTTGCTGCGTTGATTGA+GGG 0.408744 tig0034810:+13352 None:intergenic
GGAAGCATGGAAGCAGGCTT+TGG 0.413475 tig0034810:-12155 Msa1453620:CDS
TTTACATGCTTACTTGAGCC+TGG 0.419544 tig0034810:-7878 Msa1453620:three_prime_UTR
TGGTTAGGATTAGTGGTTCA+TGG 0.420233 tig0034810:-8083 Msa1453620:three_prime_UTR
CAGAGGAAGTTTGGAATAAT+CGG 0.424723 tig0034810:+13650 None:intergenic
AAGACTCGTTGCTGATGGTT+AGG 0.426716 tig0034810:-8098 Msa1453620:three_prime_UTR
ACTTTGCTGAGATCATCATC+TGG 0.441046 tig0034810:+11890 None:intergenic
TCCACAATTTCCTTCACCTC+AGG 0.451532 tig0034810:+11926 None:intergenic
GCAGCGAAAACGAGGGTTAA+CGG 0.453399 tig0034810:+13332 None:intergenic
AGCATATGATCTTACCTGTC+TGG 0.456066 tig0034810:+10310 None:intergenic
CATTTGCAGTGGTGCGGTAG+CGG 0.456458 tig0034810:-8438 Msa1453620:intron
TGCAGGTTTGTTACTATCTG+CGG 0.463565 tig0034810:-10475 Msa1453620:intron
GCAGGTTTGTTACTATCTGC+GGG 0.468290 tig0034810:-10474 Msa1453620:intron
TCAAACTTTGAAGGTGAAGC+AGG 0.469674 tig0034810:-8368 Msa1453620:CDS
GTTGGGCTTGCAGCTATAGC+AGG 0.473435 tig0034810:-9139 Msa1453620:intron
GGTGAAGTTGAGGTAGAGAA+GGG 0.479329 tig0034810:-12208 Msa1453620:CDS
AGTGAAGAATGAAATCAAAC+AGG 0.484400 tig0034810:+13609 None:intergenic
GGTTAGGATTAGTGGTTCAT+GGG 0.488878 tig0034810:-8082 Msa1453620:three_prime_UTR
TTAGGTGGGATATTATGAAC+TGG 0.491232 tig0034810:-7975 Msa1453620:three_prime_UTR
TGGTGAAGTTGAGGTAGAGA+AGG 0.492662 tig0034810:-12209 Msa1453620:CDS
GTTGAAGATACAGGCCGATA+AGG 0.495852 tig0034810:-12029 Msa1453620:CDS
AGGAAGAGAGAGTTTGAAAG+TGG 0.502707 tig0034810:+13382 None:intergenic
GCAGGCTTTGGATACATTCA+AGG 0.503712 tig0034810:-12143 Msa1453620:CDS
CTTGCTTTGAAGGGCCAGAC+AGG 0.507466 tig0034810:-10324 Msa1453620:intron
GGCGAAGAAAACGAGAGTTT+GGG 0.510115 tig0034810:+13530 None:intergenic
TTCAGAACAGTTGAAGATAC+AGG 0.510496 tig0034810:-12038 Msa1453620:CDS
CTATGAAGTGTATTCTAAGA+AGG 0.512585 tig0034810:-12083 Msa1453620:CDS
GAAGCCATTTAGGTTGAAAA+GGG 0.513339 tig0034810:+13509 None:intergenic
TTACATGCTTACTTGAGCCT+GGG 0.514785 tig0034810:-7877 Msa1453620:three_prime_UTR
AGGAAACTAGTTCAGTGATA+AGG 0.517640 tig0034810:-8348 Msa1453620:intron
GCGAAGGAAATCACTGAAGA+AGG 0.518243 tig0034810:-11983 Msa1453620:CDS
GAACAAGCTTTGAAGCTACA+AGG 0.523582 tig0034810:-12121 Msa1453620:CDS
ACGGTTTGCTGCGTTGATTG+AGG 0.525103 tig0034810:+13351 None:intergenic
ATCACAGGAAGCATGGAAGC+AGG 0.525285 tig0034810:-12161 Msa1453620:CDS
ACCTGAGGTGAAGGAAATTG+TGG 0.531778 tig0034810:-11927 Msa1453620:CDS
CCCTTCAAAGCAAGAGAAGA+GGG 0.533399 tig0034810:+10333 None:intergenic
CTTTGCTGAGATCATCATCT+GGG 0.538560 tig0034810:+11891 None:intergenic
GTTAGTTACTTTACAACCCC+AGG 0.543512 tig0034810:+7860 None:intergenic
AGGAGGAATCACAGGAAGCA+TGG 0.543731 tig0034810:-12168 Msa1453620:CDS
TGATTTGAGTGTTGTGGCGA+AGG 0.544539 tig0034810:-11999 Msa1453620:CDS
CTTCGGAGAATGAGAGAGAT+GGG 0.547043 tig0034810:+13433 None:intergenic
TGAGAATTCACCTGAGGTGA+AGG 0.548278 tig0034810:-11936 Msa1453620:CDS
TAGGATTAGTGGTTCATGGG+TGG 0.549493 tig0034810:-8079 Msa1453620:three_prime_UTR
TCGTCAAGACTCGTTGCTGA+TGG 0.551132 tig0034810:-8103 Msa1453620:three_prime_UTR
GTGTTGCGGTGTTTGAGTAA+AGG 0.557167 tig0034810:+13404 None:intergenic
ACTTCGGAGAATGAGAGAGA+TGG 0.559423 tig0034810:+13432 None:intergenic
TAACACAGAAACTGAATCCA+TGG 0.560337 tig0034810:+13475 None:intergenic
TACATGCTTACTTGAGCCTG+GGG 0.561937 tig0034810:-7876 Msa1453620:three_prime_UTR
TAGTTCTGAGGAGGAATCAC+AGG 0.564462 tig0034810:-12176 Msa1453620:CDS
GCGTAGCAGCAGCGAAAACG+AGG 0.568145 tig0034810:+13324 None:intergenic
TTGAGTAAAGGATGAAACTT+CGG 0.573545 tig0034810:+13416 None:intergenic
AAGAATGAAATCAAACAGGT+TGG 0.573943 tig0034810:+13613 None:intergenic
TTGTGAACTGTATAGGATCA+TGG 0.575738 tig0034810:-12229 Msa1453620:intron
GGGGAATGATGTTAGTTCTG+AGG 0.580091 tig0034810:-12188 Msa1453620:CDS
AACAAGCTTTGAAGCTACAA+GGG 0.592755 tig0034810:-12120 Msa1453620:CDS
CATTGCAGCAATAAGGTTTG+GGG 0.597894 tig0034810:-10421 Msa1453620:CDS
GCCCTTCAAAGCAAGAGAAG+AGG 0.598127 tig0034810:+10332 None:intergenic
GGACTTACAGAGTCATGTTG+AGG 0.601334 tig0034810:+13302 None:intergenic
AAGACATGATTTGAGTGTTG+TGG 0.608087 tig0034810:-12005 Msa1453620:CDS
ATAGGATCATGGTGAAGTTG+AGG 0.610635 tig0034810:-12218 Msa1453620:intron
AGTGAAGACTGAAGAATGCA+AGG 0.611193 tig0034810:+7924 None:intergenic
ACAATGGAATCAATGAAAGA+GGG 0.615187 tig0034810:+13577 None:intergenic
AGGAAGTTTGGAATAATCGG+TGG 0.620484 tig0034810:+13653 None:intergenic
TTCCTGTTATCATAAAGGAA+AGG 0.622707 tig0034810:+10445 None:intergenic
GGCTTCGATGAGTTTCACCA+TGG 0.627621 tig0034810:-13492 Msa1453620:CDS
GTGAAGTTGAGGTAGAGAAG+GGG 0.628557 tig0034810:-12207 Msa1453620:CDS
GAATGATGTTAGTTCTGAGG+AGG 0.633496 tig0034810:-12185 Msa1453620:CDS
ACAAGCTTTGAAGCTACAAG+GGG 0.644302 tig0034810:-12119 Msa1453620:CDS
GTATTCTAAGAAGGCCATTG+TGG 0.645713 tig0034810:-12074 Msa1453620:CDS
TGCTGCTGAGAATTCACCTG+AGG 0.654229 tig0034810:-11942 Msa1453620:CDS
GAGAATGAGAGAGATGGGTG+TGG 0.656406 tig0034810:+13438 None:intergenic
GCTGAGATCATCATCTGGGG+AGG 0.657948 tig0034810:+11895 None:intergenic
TGGTTGTTCGGAAAATGCAG+AGG 0.658234 tig0034810:+13633 None:intergenic
GGTTTGTTACTATCTGCGGG+TGG 0.661424 tig0034810:-10471 Msa1453620:CDS
GTTTGGCATTTGCAGTGGTG+CGG 0.667652 tig0034810:-8444 Msa1453620:intron
AGTATCTTGCAAAACCACAA+TGG 0.670863 tig0034810:+12060 None:intergenic
CGTTGATTGAGGGCATAACG+AGG 0.686365 tig0034810:+13362 None:intergenic
AGAGTTTGAAAGTGGTGTTG+CGG 0.690634 tig0034810:+13390 None:intergenic
TTTGCTGAGATCATCATCTG+GGG 0.696144 tig0034810:+11892 None:intergenic
CGTAGCAGCAGCGAAAACGA+GGG 0.710585 tig0034810:+13325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTATAAAAATATTGAA+AGG - tig0034810:8840-8859 Msa1453620:intron 10.0%
!!! ATGGTTAATAAATTTTAAAT+CGG - tig0034810:9619-9638 Msa1453620:intron 10.0%
!!! TTTTTTTCTTAATTCTAAAA+AGG - tig0034810:11166-11185 Msa1453620:intron 10.0%
!!! TTTTTTCTTAATTCTAAAAA+GGG - tig0034810:11167-11186 Msa1453620:intron 10.0%
!! TGAAACAAAATTATATAAAA+AGG + tig0034810:12054-12073 None:intergenic 10.0%
!! TTTAGTTGAAAATTGAAATT+TGG + tig0034810:8242-8261 None:intergenic 15.0%
!! ATTTATGTTTGAATATATCT+AGG - tig0034810:8516-8535 Msa1453620:intron 15.0%
!!! AAAGACAAAAAAATGTTTTA+GGG + tig0034810:8891-8910 None:intergenic 15.0%
!!! AAAAGACAAAAAAATGTTTT+AGG + tig0034810:8892-8911 None:intergenic 15.0%
!!! TGGTTAATAAATTTTAAATC+GGG - tig0034810:9620-9639 Msa1453620:intron 15.0%
!!! GTAATTTTGTAATTTTAGTA+GGG + tig0034810:11325-11344 None:intergenic 15.0%
!!! TGTAATTTTGTAATTTTAGT+AGG + tig0034810:11326-11345 None:intergenic 15.0%
!! AATCACAATAAACAATTAAT+TGG - tig0034810:11362-11381 Msa1453620:intron 15.0%
!!! GATTTCTTTTAAGAAAAAAA+TGG + tig0034810:11929-11948 None:intergenic 15.0%
!!! TATTTATTTTTGAAAAGTAG+TGG - tig0034810:13478-13497 Msa1453620:CDS 15.0%
!!! ACTTTATTCATTTTCTCAAA+TGG - tig0034810:8159-8178 Msa1453620:three_prime_UTR 20.0%
!!! CTTTATTCATTTTCTCAAAT+GGG - tig0034810:8160-8179 Msa1453620:three_prime_UTR 20.0%
!!! TTTATTCATTTTCTCAAATG+GGG - tig0034810:8161-8180 Msa1453620:three_prime_UTR 20.0%
!! ATAGATTATAGATAGATAGA+TGG - tig0034810:8279-8298 Msa1453620:intron 20.0%
!! AAAATTACAAAATGGCTAAA+AGG + tig0034810:8334-8353 None:intergenic 20.0%
!! TACATGTGAAAATTACAAAA+TGG + tig0034810:8342-8361 None:intergenic 20.0%
!!! TGATTCTATATAATTGATTC+TGG - tig0034810:8468-8487 Msa1453620:intron 20.0%
!! GTTTAATTGAAGCTAAAAAT+TGG + tig0034810:8599-8618 None:intergenic 20.0%
!! TCAATTAAACTCAATTCTAT+AGG - tig0034810:8609-8628 Msa1453620:intron 20.0%
!! ACAAAAAATACTCTCAAATA+CGG + tig0034810:8766-8785 None:intergenic 20.0%
!!! AAGACAAAAAAATGTTTTAG+GGG + tig0034810:8890-8909 None:intergenic 20.0%
!! TATTATGAAGAAAAACAGAT+TGG - tig0034810:8932-8951 Msa1453620:intron 20.0%
!! ATTATGAAGAAAAACAGATT+GGG - tig0034810:8933-8952 Msa1453620:intron 20.0%
!! TGAAATAAGACTTGATATTT+AGG - tig0034810:9082-9101 Msa1453620:intron 20.0%
!! GAAATAAGACTTGATATTTA+GGG - tig0034810:9083-9102 Msa1453620:intron 20.0%
!!! ACATAATTTTGTCTTCTAAA+GGG - tig0034810:9106-9125 Msa1453620:CDS 20.0%
!!! AATATAGCAAGGTTTTAAAT+TGG - tig0034810:9703-9722 Msa1453620:intron 20.0%
!! AGATTATTTATTGATGTTGT+TGG - tig0034810:9883-9902 Msa1453620:intron 20.0%
!! TCTCATTAAATGATTTAGTA+AGG - tig0034810:10812-10831 Msa1453620:intron 20.0%
!!! AGTCTGAAATCATATAAAAA+AGG - tig0034810:11067-11086 Msa1453620:intron 20.0%
!! AATTGTTTATTGTGATTCAA+AGG + tig0034810:11359-11378 None:intergenic 20.0%
!! AACAATTAATTGGACTTAAT+AGG - tig0034810:11372-11391 Msa1453620:intron 20.0%
!! CTAAATAGAGAAAATATAAG+TGG - tig0034810:11457-11476 Msa1453620:intron 20.0%
!! ACAATTAAACCAATGATAAT+TGG + tig0034810:11771-11790 None:intergenic 20.0%
!!! CATTTATTTTATGCCAATAA+GGG - tig0034810:11822-11841 Msa1453620:intron 20.0%
!!! ATTTATTTTATGCCAATAAG+GGG - tig0034810:11823-11842 Msa1453620:intron 20.0%
!! TTCAAAAAATCATTGTTTCA+TGG - tig0034810:11852-11871 Msa1453620:CDS 20.0%
!! TAAAAGAAATCGTAAAAGTA+TGG - tig0034810:11938-11957 Msa1453620:CDS 20.0%
!!! AAAAGAAATCGTAAAAGTAT+GGG - tig0034810:11939-11958 Msa1453620:CDS 20.0%
!! GTGATCAAATATATTAGAAT+TGG - tig0034810:12103-12122 Msa1453620:CDS 20.0%
!!! TCAACTATTTTGTAATTGAT+TGG - tig0034810:12198-12217 Msa1453620:CDS 20.0%
!! TAATGAATTAGTGTTACAAA+CGG - tig0034810:12694-12713 Msa1453620:intron 20.0%
!!! TTTTGTTGTATAACTTTGTT+TGG - tig0034810:12966-12985 Msa1453620:intron 20.0%
!! ATGATATCAATAAACTGAAT+AGG + tig0034810:13109-13128 None:intergenic 20.0%
!! ATGTTTAACTGAACTTTATT+GGG + tig0034810:13143-13162 None:intergenic 20.0%
!! TATGTTTAACTGAACTTTAT+TGG + tig0034810:13144-13163 None:intergenic 20.0%
! TCAAAGTAAGAGAAAAACAA+TGG + tig0034810:7869-7888 None:intergenic 25.0%
!! TGAATAAAGTTAGATCCTTT+TGG + tig0034810:8149-8168 None:intergenic 25.0%
! TGCATTGAATTTGACAAAAA+TGG + tig0034810:8192-8211 None:intergenic 25.0%
!!! TTCACCTCTAAAATCAATTT+TGG - tig0034810:8644-8663 Msa1453620:intron 25.0%
! TTATGAAGAAAAACAGATTG+GGG - tig0034810:8934-8953 Msa1453620:intron 25.0%
!! GACATAATTTTGTCTTCTAA+AGG - tig0034810:9105-9124 Msa1453620:CDS 25.0%
!! TTCTAAAGGGACTTATAATT+AGG - tig0034810:9119-9138 Msa1453620:CDS 25.0%
! TAACAGTTTCTGCATTATTT+AGG + tig0034810:9672-9691 None:intergenic 25.0%
! CGAAAAGTTATGAATAAATG+TGG - tig0034810:9765-9784 Msa1453620:intron 25.0%
! ATTACGATTTATGCATGATA+AGG - tig0034810:10058-10077 Msa1453620:intron 25.0%
! ATCATATAAATATGGCATTG+TGG - tig0034810:10222-10241 Msa1453620:intron 25.0%
! TTGATATGCTACATATGATT+TGG + tig0034810:10732-10751 None:intergenic 25.0%
!!! CAATTTTGACTACCATAATA+TGG - tig0034810:10749-10768 Msa1453620:intron 25.0%
! GAACATTAAAGTGGATATTT+GGG + tig0034810:10902-10921 None:intergenic 25.0%
! AGAACATTAAAGTGGATATT+TGG + tig0034810:10903-10922 None:intergenic 25.0%
!!! GATTTCATTTTTGACAATCT+TGG + tig0034810:11248-11267 None:intergenic 25.0%
!!! GTAACTTTTAAGTTAAGATG+GGG + tig0034810:11425-11444 None:intergenic 25.0%
!!! CGTAACTTTTAAGTTAAGAT+GGG + tig0034810:11426-11445 None:intergenic 25.0%
!!! TCGTAACTTTTAAGTTAAGA+TGG + tig0034810:11427-11446 None:intergenic 25.0%
! GTAAAAATTGCATTTGAACT+CGG + tig0034810:11732-11751 None:intergenic 25.0%
!!! GCATTTATTTTATGCCAATA+AGG - tig0034810:11821-11840 Msa1453620:intron 25.0%
!!! TTTATTTTATGCCAATAAGG+GGG - tig0034810:11824-11843 Msa1453620:intron 25.0%
!!! ATGAAAGTGTTGCATATTTT+AGG - tig0034810:11996-12015 Msa1453620:CDS 25.0%
!!! TGAAAGTGTTGCATATTTTA+GGG - tig0034810:11997-12016 Msa1453620:CDS 25.0%
!! AGCTGATTTAAATTACTTGT+TGG - tig0034810:12270-12289 Msa1453620:intron 25.0%
!! GCTGATTTAAATTACTTGTT+GGG - tig0034810:12271-12290 Msa1453620:intron 25.0%
!! ATTTGACTTAAACAGTAAAC+AGG + tig0034810:12650-12669 None:intergenic 25.0%
! GTTGAACATTAAATGACATT+TGG - tig0034810:12892-12911 Msa1453620:intron 25.0%
!! AGACTGTCATAGTAAATTTT+TGG - tig0034810:13295-13314 Msa1453620:intron 25.0%
!! TTATGCATGAACTACATTTT+AGG - tig0034810:13434-13453 Msa1453620:CDS 25.0%
! TTGTGAAATTTACTCTCTTA+TGG + tig0034810:13529-13548 None:intergenic 25.0%
AAGAATGAAATCAAACAGGT+TGG + tig0034810:7817-7836 None:intergenic 30.0%
AGTGAAGAATGAAATCAAAC+AGG + tig0034810:7821-7840 None:intergenic 30.0%
ACAATGGAATCAATGAAAGA+GGG + tig0034810:7853-7872 None:intergenic 30.0%
AACAATGGAATCAATGAAAG+AGG + tig0034810:7854-7873 None:intergenic 30.0%
TTGAGTAAAGGATGAAACTT+CGG + tig0034810:8014-8033 None:intergenic 30.0%
CACAGTTGAATTACACAAAA+TGG + tig0034810:8425-8444 None:intergenic 30.0%
AATTCAACTGTGTGTATGTT+TGG - tig0034810:8433-8452 Msa1453620:intron 30.0%
! TAAAAGTGAGTTGAAGGTAA+AGG - tig0034810:8492-8511 Msa1453620:intron 30.0%
AAAAATACTCTCAAATACGG+TGG + tig0034810:8763-8782 None:intergenic 30.0%
!!! CAAAAAAATGTTTTAGGGGA+GGG + tig0034810:8886-8905 None:intergenic 30.0%
!!! ACAAAAAAATGTTTTAGGGG+AGG + tig0034810:8887-8906 None:intergenic 30.0%
! TTTTTGTCTTTTCCCATGTT+AGG - tig0034810:8900-8919 Msa1453620:intron 30.0%
! TTTTGTCTTTTCCCATGTTA+GGG - tig0034810:8901-8920 Msa1453620:intron 30.0%
ATACAAAATTCCCCTAACAT+GGG + tig0034810:8915-8934 None:intergenic 30.0%
AATACAAAATTCCCCTAACA+TGG + tig0034810:8916-8935 None:intergenic 30.0%
TATGAAGAAAAACAGATTGG+GGG - tig0034810:8935-8954 Msa1453620:intron 30.0%
CTTTCAATAATGCTACTACT+AGG + tig0034810:9040-9059 None:intergenic 30.0%
GGACTTATAATTAGGAAGAT+AGG - tig0034810:9127-9146 Msa1453620:CDS 30.0%
!! TGTTGTTGAATTTGCTAATG+TGG - tig0034810:9174-9193 Msa1453620:intron 30.0%
CTTCTTAGAATACACTTCAT+AGG + tig0034810:9346-9365 None:intergenic 30.0%
! CTATGAAGTGTATTCTAAGA+AGG - tig0034810:9344-9363 Msa1453620:intron 30.0%
! TTTTATGTTGGTATACCCTA+TGG - tig0034810:9576-9595 Msa1453620:intron 30.0%
TACCCTATGGTATGTATTTA+TGG - tig0034810:9589-9608 Msa1453620:intron 30.0%
AGCCATAAATACATACCATA+GGG + tig0034810:9594-9613 None:intergenic 30.0%
ATGTATTTATGGCTGTTGTA+TGG - tig0034810:9600-9619 Msa1453620:intron 30.0%
AGATGCATTTGAATATAGCA+AGG - tig0034810:9692-9711 Msa1453620:intron 30.0%
!!! AAGGTTTTAAATTGGAGTTG+TGG - tig0034810:9711-9730 Msa1453620:intron 30.0%
CTGCAATATCATTATTTGGA+AGG + tig0034810:9822-9841 None:intergenic 30.0%
TCAATAAATAATCTAGTCCG+TGG + tig0034810:9877-9896 None:intergenic 30.0%
TTGTCCTCAACCTATTAATA+GGG + tig0034810:9985-10004 None:intergenic 30.0%
ATTGTCCTCAACCTATTAAT+AGG + tig0034810:9986-10005 None:intergenic 30.0%
GCATATTTAAGTCCTACAAA+AGG + tig0034810:10089-10108 None:intergenic 30.0%
AGGACTTAAATATGCTGATA+AGG - tig0034810:10094-10113 Msa1453620:intron 30.0%
TGATGAAAGTTATCCTCTAA+TGG - tig0034810:10133-10152 Msa1453620:intron 30.0%
! GTCATTGATAACATTGACAA+GGG + tig0034810:10169-10188 None:intergenic 30.0%
CTTGTCAATGTTATCAATGA+CGG - tig0034810:10168-10187 Msa1453620:intron 30.0%
! TGATAAAGCATTCAATAAGC+CGG + tig0034810:10775-10794 None:intergenic 30.0%
GATATGACTATTATACTGAC+TGG - tig0034810:10851-10870 Msa1453620:intron 30.0%
ATTAAAGTGGATATTTGGGA+GGG + tig0034810:10898-10917 None:intergenic 30.0%
ACATCACAAGAACATTAAAG+TGG + tig0034810:10911-10930 None:intergenic 30.0%
TAACAAACCTGCAAAGTAAT+AGG + tig0034810:10945-10964 None:intergenic 30.0%
TTCCTTTCCTTTATGATAAC+AGG - tig0034810:10980-10999 Msa1453620:intron 30.0%
TTCCTGTTATCATAAAGGAA+AGG + tig0034810:10985-11004 None:intergenic 30.0%
AATGCTTCCTGTTATCATAA+AGG + tig0034810:10990-11009 None:intergenic 30.0%
GAGAGAAAACATTTAAATCC+AGG - tig0034810:11289-11308 Msa1453620:intron 30.0%
TGTTTATTGTGATTCAAAGG+TGG + tig0034810:11356-11375 None:intergenic 30.0%
!! TTAATGGGCTTCTATTTCAT+GGG + tig0034810:11519-11538 None:intergenic 30.0%
TGTAAATTACATACCCTTTC+CGG + tig0034810:11546-11565 None:intergenic 30.0%
! AAATCATATCTTGGTGTGAT+TGG + tig0034810:11655-11674 None:intergenic 30.0%
! TCACACCAAGATATGATTTT+TGG - tig0034810:11656-11675 Msa1453620:intron 30.0%
!!! ATTTTTGGTGTGCATAAGAT+TGG - tig0034810:11671-11690 Msa1453620:intron 30.0%
! ATTGGTCAATAGTATTGAAC+TGG - tig0034810:11689-11708 Msa1453620:intron 30.0%
TCAATGCATCCAATTATCAT+TGG - tig0034810:11759-11778 Msa1453620:intron 30.0%
TCATGGTCGAAATGATTTAT+TGG - tig0034810:11869-11888 Msa1453620:CDS 30.0%
CATGGTCGAAATGATTTATT+GGG - tig0034810:11870-11889 Msa1453620:CDS 30.0%
TCGAAATGATTTATTGGGTT+TGG - tig0034810:11875-11894 Msa1453620:CDS 30.0%
AATTTAAATCAGCTATGCGA+TGG + tig0034810:12264-12283 None:intergenic 30.0%
TTGAATAGAAACCTAATGCT+AGG + tig0034810:12857-12876 None:intergenic 30.0%
TTAGAAGGTAAACCACAAAA+AGG - tig0034810:13035-13054 Msa1453620:intron 30.0%
! TCAAAGTTTGAACCTTTTTG+TGG + tig0034810:13050-13069 None:intergenic 30.0%
CAAAAAGGTTCAAACTTTGA+AGG - tig0034810:13050-13069 Msa1453620:intron 30.0%
! AAGCAATATCATGATTTTCC+AGG + tig0034810:13384-13403 None:intergenic 30.0%
GATGTTTCTCTTACCAAATA+AGG - tig0034810:13598-13617 Msa1453620:five_prime_UTR 30.0%
!!! CACTTTTTCACATCCTTATT+TGG + tig0034810:13614-13633 None:intergenic 30.0%
! ATAAGGATGTGAAAAAGTGT+AGG - tig0034810:13615-13634 Msa1453620:five_prime_UTR 30.0%
! CAGAGGAAGTTTGGAATAAT+CGG + tig0034810:7780-7799 None:intergenic 35.0%
!! AATCAAACAGGTTGGTTGTT+CGG + tig0034810:7809-7828 None:intergenic 35.0%
!! GAAGCCATTTAGGTTGAAAA+GGG + tig0034810:7921-7940 None:intergenic 35.0%
TAACACAGAAACTGAATCCA+TGG + tig0034810:7955-7974 None:intergenic 35.0%
!! GGGACCAAAATTGATTTTAG+AGG + tig0034810:8651-8670 None:intergenic 35.0%
!! AAAATCAATTTTGGTCCCTC+TGG - tig0034810:8653-8672 Msa1453620:intron 35.0%
! TTTGTCTTTTCCCATGTTAG+GGG - tig0034810:8902-8921 Msa1453620:intron 35.0%
!! AAGAGCTTTGAGAAAAAGGA+AGG + tig0034810:8970-8989 None:intergenic 35.0%
TATGTTTGGGAGTTTAGTAG+GGG + tig0034810:8997-9016 None:intergenic 35.0%
CTATGTTTGGGAGTTTAGTA+GGG + tig0034810:8998-9017 None:intergenic 35.0%
! ATGTGGATTGTGAACTGTAT+AGG - tig0034810:9191-9210 Msa1453620:intron 35.0%
TTGTGAACTGTATAGGATCA+TGG - tig0034810:9198-9217 Msa1453620:intron 35.0%
!! AACAAGCTTTGAAGCTACAA+GGG - tig0034810:9307-9326 Msa1453620:intron 35.0%
AGTATCTTGCAAAACCACAA+TGG + tig0034810:9370-9389 None:intergenic 35.0%
TTCAGAACAGTTGAAGATAC+AGG - tig0034810:9389-9408 Msa1453620:intron 35.0%
CAAATCATGTCTTGCCTTAT+CGG + tig0034810:9415-9434 None:intergenic 35.0%
! AAGACATGATTTGAGTGTTG+TGG - tig0034810:9422-9441 Msa1453620:intron 35.0%
CAGCCATAAATACATACCAT+AGG + tig0034810:9595-9614 None:intergenic 35.0%
GAATAAATGTGGCTGAATTG+TGG - tig0034810:9776-9795 Msa1453620:intron 35.0%
TAGTCCGTGGTTTCAATTTA+CGG + tig0034810:9864-9883 None:intergenic 35.0%
!! TGTTGTTGGCTAAAGTTTTG+TGG - tig0034810:9897-9916 Msa1453620:intron 35.0%
GATTCTATACCGACACATTT+AGG - tig0034810:9953-9972 Msa1453620:intron 35.0%
TAGGCTAAGTCCCTATTAAT+AGG - tig0034810:9972-9991 Msa1453620:intron 35.0%
AAGTCCCTATTAATAGGTTG+AGG - tig0034810:9978-9997 Msa1453620:intron 35.0%
ACTTGATCATCTTCACATGT+TGG - tig0034810:10011-10030 Msa1453620:intron 35.0%
CTTGATCATCTTCACATGTT+GGG - tig0034810:10012-10031 Msa1453620:intron 35.0%
AAATCGTAATCCCCATTAGT+AGG + tig0034810:10048-10067 None:intergenic 35.0%
!!! GATAAGGATTAGCCTTTTGT+AGG - tig0034810:10074-10093 Msa1453620:intron 35.0%
AAAGTTATCCTCTAATGGAG+AGG - tig0034810:10138-10157 Msa1453620:intron 35.0%
! CGTCATTGATAACATTGACA+AGG + tig0034810:10170-10189 None:intergenic 35.0%
ATGCCTATATTATCTGCCAT+AGG + tig0034810:10248-10267 None:intergenic 35.0%
TATGGCAGATAATATAGGCA+TGG - tig0034810:10247-10266 Msa1453620:intron 35.0%
GTTGTTGACACAATCAATCA+TGG - tig0034810:10269-10288 Msa1453620:intron 35.0%
ATAATGCCATGTCAGCAATT+TGG - tig0034810:10293-10312 Msa1453620:intron 35.0%
ATCAGTCCTTACTCCTTATA+AGG + tig0034810:10329-10348 None:intergenic 35.0%
TTTGACTACCATAATATGGC+CGG - tig0034810:10753-10772 Msa1453620:intron 35.0%
CATTAAAGTGGATATTTGGG+AGG + tig0034810:10899-10918 None:intergenic 35.0%
TGATACTCCTATTACTTTGC+AGG - tig0034810:10935-10954 Msa1453620:intron 35.0%
!! ATAAGGTTTGGGGTGATTTT+AGG - tig0034810:11016-11035 Msa1453620:intron 35.0%
CATACTATTGCAAACGTTAG+AGG + tig0034810:11222-11241 None:intergenic 35.0%
TGAAATCTCCTACCTAAGAT+TGG - tig0034810:11261-11280 Msa1453620:intron 35.0%
! TAGTAGGGTTTTCTAATTCC+TGG + tig0034810:11310-11329 None:intergenic 35.0%
ATGCAAACTCATAAGTCACA+AGG - tig0034810:11399-11418 Msa1453620:intron 35.0%
GAGAAAATATAAGTGGAGAC+CGG - tig0034810:11464-11483 Msa1453620:intron 35.0%
!! CTTAATGGGCTTCTATTTCA+TGG + tig0034810:11520-11539 None:intergenic 35.0%
ATAGAAGCCCATTAAGTAAC+CGG - tig0034810:11524-11543 Msa1453620:intron 35.0%
! GGAAAGGGTATGTAATTTAC+AGG - tig0034810:11545-11564 Msa1453620:intron 35.0%
TAGGATGACCTAGAATACTT+GGG + tig0034810:11630-11649 None:intergenic 35.0%
GCACACCAAAAATCATATCT+TGG + tig0034810:11664-11683 None:intergenic 35.0%
TTTGAAGAAAACCCCCTTAT+TGG + tig0034810:11838-11857 None:intergenic 35.0%
! GAAATCGTAAAAGTATGGGT+TGG - tig0034810:11943-11962 Msa1453620:CDS 35.0%
AACAAGTGCAAGCTAGTAAT+TGG + tig0034810:11974-11993 None:intergenic 35.0%
!! AAGGCACATATAAGTATCGA+TGG + tig0034810:12156-12175 None:intergenic 35.0%
TGTTTAGAGAGCTGGATAAA+AGG + tig0034810:12175-12194 None:intergenic 35.0%
!! AGTGAAATAAGTTGATCCCT+GGG + tig0034810:12450-12469 None:intergenic 35.0%
CTTATTTCACTGCTTTGATC+AGG - tig0034810:12459-12478 Msa1453620:intron 35.0%
TTGAGATTATCGGTAAAGGT+TGG + tig0034810:12571-12590 None:intergenic 35.0%
AAACATGAAAAAGCAGCAAG+TGG + tig0034810:12594-12613 None:intergenic 35.0%
TTCCTACTTGACATTGCATT+TGG - tig0034810:12721-12740 Msa1453620:intron 35.0%
! GGCATTTTATGTCTATAGAC+TGG - tig0034810:13010-13029 Msa1453620:intron 35.0%
!!! GTCTATAGACTGGTTTTAGA+AGG - tig0034810:13020-13039 Msa1453620:intron 35.0%
AGGAAACTAGTTCAGTGATA+AGG - tig0034810:13079-13098 Msa1453620:intron 35.0%
GAAGTGTGTATGTTGAAAAG+AGG + tig0034810:13179-13198 None:intergenic 35.0%
! TGCATGAACTACATTTTAGG+TGG - tig0034810:13437-13456 Msa1453620:CDS 35.0%
!! GCATGAACTACATTTTAGGT+GGG - tig0034810:13438-13457 Msa1453620:CDS 35.0%
TTAGGTGGGATATTATGAAC+TGG - tig0034810:13452-13471 Msa1453620:CDS 35.0%
! AGGAAGTTTGGAATAATCGG+TGG + tig0034810:7777-7796 None:intergenic 40.0%
GAAAACGAGAGTTTGGGAAT+TGG + tig0034810:7894-7913 None:intergenic 40.0%
! TTCGCCCTTTTCAACCTAAA+TGG - tig0034810:7914-7933 Msa1453620:three_prime_UTR 40.0%
!! CGAAGCCATTTAGGTTGAAA+AGG + tig0034810:7922-7941 None:intergenic 40.0%
GAAACTCATCGAAGCCATTT+AGG + tig0034810:7931-7950 None:intergenic 40.0%
! AGAGTTTGAAAGTGGTGTTG+CGG + tig0034810:8040-8059 None:intergenic 40.0%
AGGAAGAGAGAGTTTGAAAG+TGG + tig0034810:8048-8067 None:intergenic 40.0%
CATGACTCTGTAAGTCCAAA+AGG - tig0034810:8131-8150 Msa1453620:three_prime_UTR 40.0%
! TCTGGCTAAAAGTGAGTTGA+AGG - tig0034810:8486-8505 Msa1453620:intron 40.0%
! GTTTTTCTGCAGCTCTGTTT+GGG - tig0034810:8675-8694 Msa1453620:intron 40.0%
!!! AATGTTTTAGGGGAGGGTTT+AGG + tig0034810:8880-8899 None:intergenic 40.0%
!! AGGGAAGAGCTTTGAGAAAA+AGG + tig0034810:8974-8993 None:intergenic 40.0%
GCTATGTTTGGGAGTTTAGT+AGG + tig0034810:8999-9018 None:intergenic 40.0%
TGCTACTACTAGGTTGTCTT+GGG + tig0034810:9030-9049 None:intergenic 40.0%
ATGCTACTACTAGGTTGTCT+TGG + tig0034810:9031-9050 None:intergenic 40.0%
ATAGGATCATGGTGAAGTTG+AGG - tig0034810:9209-9228 Msa1453620:intron 40.0%
!! GAATGATGTTAGTTCTGAGG+AGG - tig0034810:9242-9261 Msa1453620:intron 40.0%
!! GAACAAGCTTTGAAGCTACA+AGG - tig0034810:9306-9325 Msa1453620:intron 40.0%
!! ACAAGCTTTGAAGCTACAAG+GGG - tig0034810:9308-9327 Msa1453620:intron 40.0%
! GTATTCTAAGAAGGCCATTG+TGG - tig0034810:9353-9372 Msa1453620:intron 40.0%
TTTGCTGAGATCATCATCTG+GGG + tig0034810:9538-9557 None:intergenic 40.0%
CTTTGCTGAGATCATCATCT+GGG + tig0034810:9539-9558 None:intergenic 40.0%
ACTTTGCTGAGATCATCATC+TGG + tig0034810:9540-9559 None:intergenic 40.0%
GATGATCTCAGCAAAGTTTC+TGG - tig0034810:9543-9562 Msa1453620:intron 40.0%
!! TCAGCAAAGTTTCTGGAGTT+CGG - tig0034810:9550-9569 Msa1453620:intron 40.0%
GCGGCTGCAATATCATTATT+TGG + tig0034810:9826-9845 None:intergenic 40.0%
TCGACCGTAAATTGAAACCA+CGG - tig0034810:9857-9876 Msa1453620:intron 40.0%
!! TGTTGGCTAAAGTTTTGTGG+CGG - tig0034810:9900-9919 Msa1453620:intron 40.0%
!! GAGGTATTGCTCCTACTAAT+GGG - tig0034810:10034-10053 Msa1453620:intron 40.0%
! AGGTATTGCTCCTACTAATG+GGG - tig0034810:10035-10054 Msa1453620:intron 40.0%
AAATATGGCATTGTGGCCTA+TGG - tig0034810:10229-10248 Msa1453620:intron 40.0%
TGGCCTATGGCAGATAATAT+AGG - tig0034810:10242-10261 Msa1453620:intron 40.0%
ACCAGTCCTTATAAGGAGTA+AGG - tig0034810:10320-10339 Msa1453620:intron 40.0%
TCCTTACTCCTTATAAGGAC+TGG + tig0034810:10324-10343 None:intergenic 40.0%
TGATGTTGTGGGTGTCTTTA+TGG - tig0034810:10345-10364 Msa1453620:CDS 40.0%
TGGGTGTCTTTATGGATGTT+GGG - tig0034810:10353-10372 Msa1453620:CDS 40.0%
CGTTGAATTGTATGCGCTTT+CGG - tig0034810:10419-10438 Msa1453620:CDS 40.0%
TCAATAAGCCGGCCATATTA+TGG + tig0034810:10764-10783 None:intergenic 40.0%
!! TGCAGGTTTGTTACTATCTG+CGG - tig0034810:10952-10971 Msa1453620:intron 40.0%
AGCATTGCAGCAATAAGGTT+TGG - tig0034810:11004-11023 Msa1453620:intron 40.0%
GCATTGCAGCAATAAGGTTT+GGG - tig0034810:11005-11024 Msa1453620:intron 40.0%
CATTGCAGCAATAAGGTTTG+GGG - tig0034810:11006-11025 Msa1453620:intron 40.0%
!! GATTTTAGGTGGTGTGCTAT+TGG - tig0034810:11030-11049 Msa1453620:intron 40.0%
AGCATATGATCTTACCTGTC+TGG + tig0034810:11120-11139 None:intergenic 40.0%
ATCTCCTACCTAAGATTGGA+AGG - tig0034810:11265-11284 Msa1453620:intron 40.0%
TCTCCTACCTAAGATTGGAA+GGG - tig0034810:11266-11285 Msa1453620:intron 40.0%
! GACTATCGTCCTCTATTTTC+CGG + tig0034810:11486-11505 None:intergenic 40.0%
ACCCTTTCCGGTTACTTAAT+GGG + tig0034810:11534-11553 None:intergenic 40.0%
TACCCTTTCCGGTTACTTAA+TGG + tig0034810:11535-11554 None:intergenic 40.0%
GTAGGATGACCTAGAATACT+TGG + tig0034810:11631-11650 None:intergenic 40.0%
! TATCTTGGTGTGATTGGTGT+AGG + tig0034810:11649-11668 None:intergenic 40.0%
! GGTCAATAGTATTGAACTGG+AGG - tig0034810:11692-11711 Msa1453620:intron 40.0%
! GTTGATGTTGTTTAGAGAGC+TGG + tig0034810:12183-12202 None:intergenic 40.0%
!!! CTCTTGTTTTCCTTTTCCCA+GGG - tig0034810:12431-12450 Msa1453620:intron 40.0%
!! ATAAGTTGATCCCTGGGAAA+AGG + tig0034810:12444-12463 None:intergenic 40.0%
!! CAGTGAAATAAGTTGATCCC+TGG + tig0034810:12451-12470 None:intergenic 40.0%
ATTATCGGTAAAGGTTGGCA+TGG + tig0034810:12566-12585 None:intergenic 40.0%
GTGGTTGAGATTATCGGTAA+AGG + tig0034810:12575-12594 None:intergenic 40.0%
CAGCAAGTGGTTGAGATTAT+CGG + tig0034810:12581-12600 None:intergenic 40.0%
GTCCAAATGCAATGTCAAGT+AGG + tig0034810:12726-12745 None:intergenic 40.0%
ACTTGACATTGCATTTGGAC+TGG - tig0034810:12726-12745 Msa1453620:intron 40.0%
CAGAAAACTCACCTAGCATT+AGG - tig0034810:12843-12862 Msa1453620:intron 40.0%
TATTCAACCTGCAGAAATGC+AGG - tig0034810:12870-12889 Msa1453620:intron 40.0%
! ACTTTGTTTGGCATTTGCAG+TGG - tig0034810:12978-12997 Msa1453620:intron 40.0%
! TCAAACTTTGAAGGTGAAGC+AGG - tig0034810:13059-13078 Msa1453620:intron 40.0%
TTGCTGATGGTTAGGATTAG+TGG - tig0034810:13337-13356 Msa1453620:CDS 40.0%
! TGGTTAGGATTAGTGGTTCA+TGG - tig0034810:13344-13363 Msa1453620:CDS 40.0%
! GGTTAGGATTAGTGGTTCAT+GGG - tig0034810:13345-13364 Msa1453620:CDS 40.0%
AGTGAAGACTGAAGAATGCA+AGG + tig0034810:13506-13525 None:intergenic 40.0%
TTTACATGCTTACTTGAGCC+TGG - tig0034810:13549-13568 Msa1453620:five_prime_UTR 40.0%
TTACATGCTTACTTGAGCCT+GGG - tig0034810:13550-13569 Msa1453620:five_prime_UTR 40.0%
! GTTAGTTACTTTACAACCCC+AGG + tig0034810:13570-13589 None:intergenic 40.0%
!! GGTTTTGTCACGTGTGTGTT+GGG + tig0034810:7756-7775 None:intergenic 45.0%
!!! TGGTTTTGTCACGTGTGTGT+TGG + tig0034810:7757-7776 None:intergenic 45.0%
CGGAAAATGCAGAGGAAGTT+TGG + tig0034810:7789-7808 None:intergenic 45.0%
TGGTTGTTCGGAAAATGCAG+AGG + tig0034810:7797-7816 None:intergenic 45.0%
GGCGAAGAAAACGAGAGTTT+GGG + tig0034810:7900-7919 None:intergenic 45.0%
GATGGGTGTGGTTGAGTTTA+GGG + tig0034810:7980-7999 None:intergenic 45.0%
AGATGGGTGTGGTTGAGTTT+AGG + tig0034810:7981-8000 None:intergenic 45.0%
CTTCGGAGAATGAGAGAGAT+GGG + tig0034810:7997-8016 None:intergenic 45.0%
ACTTCGGAGAATGAGAGAGA+TGG + tig0034810:7998-8017 None:intergenic 45.0%
GTGTTGCGGTGTTTGAGTAA+AGG + tig0034810:8026-8045 None:intergenic 45.0%
GGACTTACAGAGTCATGTTG+AGG + tig0034810:8128-8147 None:intergenic 45.0%
AGAGCTGCAGAAAAACCAGA+GGG + tig0034810:8671-8690 None:intergenic 45.0%
! GGTTTTTCTGCAGCTCTGTT+TGG - tig0034810:8674-8693 Msa1453620:intron 45.0%
TTTGGGAGTTTAGTAGGGGA+GGG + tig0034810:8993-9012 None:intergenic 45.0%
GGGAGATGAAGGCTATGTTT+GGG + tig0034810:9010-9029 None:intergenic 45.0%
TGGGAGATGAAGGCTATGTT+TGG + tig0034810:9011-9030 None:intergenic 45.0%
TAGGTTGTCTTGGGAGATGA+AGG + tig0034810:9021-9040 None:intergenic 45.0%
TGGTGAAGTTGAGGTAGAGA+AGG - tig0034810:9218-9237 Msa1453620:intron 45.0%
GGTGAAGTTGAGGTAGAGAA+GGG - tig0034810:9219-9238 Msa1453620:intron 45.0%
GTGAAGTTGAGGTAGAGAAG+GGG - tig0034810:9220-9239 Msa1453620:intron 45.0%
!! GGGGAATGATGTTAGTTCTG+AGG - tig0034810:9239-9258 Msa1453620:intron 45.0%
!! TAGTTCTGAGGAGGAATCAC+AGG - tig0034810:9251-9270 Msa1453620:intron 45.0%
!! GCAGGCTTTGGATACATTCA+AGG - tig0034810:9284-9303 Msa1453620:intron 45.0%
GTTGAAGATACAGGCCGATA+AGG - tig0034810:9398-9417 Msa1453620:intron 45.0%
! TGATTTGAGTGTTGTGGCGA+AGG - tig0034810:9428-9447 Msa1453620:intron 45.0%
GCGAAGGAAATCACTGAAGA+AGG - tig0034810:9444-9463 Msa1453620:intron 45.0%
TGAGAATTCACCTGAGGTGA+AGG - tig0034810:9491-9510 Msa1453620:intron 45.0%
ACCTGAGGTGAAGGAAATTG+TGG - tig0034810:9500-9519 Msa1453620:intron 45.0%
TCCACAATTTCCTTCACCTC+AGG + tig0034810:9504-9523 None:intergenic 45.0%
!! CAGCAAAGTTTCTGGAGTTC+GGG - tig0034810:9551-9570 Msa1453620:intron 45.0%
! GGAGTTCGGGACTTTTATGT+TGG - tig0034810:9564-9583 Msa1453620:intron 45.0%
GCTGAATTGTGGTTACGATG+CGG - tig0034810:9787-9806 Msa1453620:intron 45.0%
GGGACTTAGCCTAAATGTGT+CGG + tig0034810:9965-9984 None:intergenic 45.0%
GATCATCTTCACATGTTGGG+AGG - tig0034810:10015-10034 Msa1453620:intron 45.0%
!! GGAGGTATTGCTCCTACTAA+TGG - tig0034810:10033-10052 Msa1453620:intron 45.0%
!! CAATGACGGACGACAGATTA+TGG - tig0034810:10182-10201 Msa1453620:intron 45.0%
GTGTTGCCAAATTGCTGACA+TGG + tig0034810:10302-10321 None:intergenic 45.0%
TGGCAACACCAGTCCTTATA+AGG - tig0034810:10313-10332 Msa1453620:intron 45.0%
AGGAGTAAGGACTGATGTTG+TGG - tig0034810:10333-10352 Msa1453620:CDS 45.0%
GGAGTAAGGACTGATGTTGT+GGG - tig0034810:10334-10353 Msa1453620:CDS 45.0%
GTGGGTGTCTTTATGGATGT+TGG - tig0034810:10352-10371 Msa1453620:CDS 45.0%
GATGTTGGGCTGATGTAACA+GGG - tig0034810:10367-10386 Msa1453620:CDS 45.0%
!! GCAGGTTTGTTACTATCTGC+GGG - tig0034810:10953-10972 Msa1453620:intron 45.0%
!! CAGGAAGCATTGCAGCAATA+AGG - tig0034810:10999-11018 Msa1453620:intron 45.0%
!! AGGTTTGGGGTGATTTTAGG+TGG - tig0034810:11019-11038 Msa1453620:intron 45.0%
CCCTTCAAAGCAAGAGAAGA+GGG + tig0034810:11097-11116 None:intergenic 45.0%
! CCCTCTTCTCTTGCTTTGAA+GGG - tig0034810:11094-11113 Msa1453620:intron 45.0%
CTCCTACCTAAGATTGGAAG+GGG - tig0034810:11267-11286 Msa1453620:intron 45.0%
TTCTCTCCCCTTCCAATCTT+AGG + tig0034810:11276-11295 None:intergenic 45.0%
AAGTGGAGACCGGAAAATAG+AGG - tig0034810:11474-11493 Msa1453620:intron 45.0%
CTTCTATTTCATGGGACCGT+GGG + tig0034810:11511-11530 None:intergenic 45.0%
AGCCCATTAAGTAACCGGAA+AGG - tig0034810:11529-11548 Msa1453620:intron 45.0%
GCCCATTAAGTAACCGGAAA+GGG - tig0034810:11530-11549 Msa1453620:intron 45.0%
ACCTTTACTGCAGGTCTAGT+GGG + tig0034810:11574-11593 None:intergenic 45.0%
! TAGACCTGCAGTAAAGGTGT+GGG - tig0034810:11576-11595 Msa1453620:intron 45.0%
ACCTAGAATACTTGGGCGAT+TGG + tig0034810:11623-11642 None:intergenic 45.0%
CTGCGTGAGATCAGCATATT+AGG - tig0034810:12321-12340 Msa1453620:intron 45.0%
!!! GCTCTTGTTTTCCTTTTCCC+AGG - tig0034810:12430-12449 Msa1453620:intron 45.0%
TGTTCAACCTGCATTTCTGC+AGG + tig0034810:12880-12899 None:intergenic 45.0%
AAGACTCGTTGCTGATGGTT+AGG - tig0034810:13329-13348 Msa1453620:CDS 45.0%
! TAGGATTAGTGGTTCATGGG+TGG - tig0034810:13348-13367 Msa1453620:CDS 45.0%
TACATGCTTACTTGAGCCTG+GGG - tig0034810:13551-13570 Msa1453620:five_prime_UTR 45.0%
!!! TATTTATATGATAAATTTTT+TGG + tig0034810:10214-10233 None:intergenic 5.0%
!! AAAAATTTATCATATAAATA+TGG - tig0034810:10214-10233 Msa1453620:intron 5.0%
!!! ATTTTGTTTTTATATAATAT+TGG - tig0034810:12026-12045 Msa1453620:CDS 5.0%
GGGCGAAGAAAACGAGAGTT+TGG + tig0034810:7901-7920 None:intergenic 50.0%
GGCTTCGATGAGTTTCACCA+TGG - tig0034810:7935-7954 Msa1453620:three_prime_UTR 50.0%
GAGAATGAGAGAGATGGGTG+TGG + tig0034810:7992-8011 None:intergenic 50.0%
! CGTTGATTGAGGGCATAACG+AGG + tig0034810:8068-8087 None:intergenic 50.0%
!! CGGTTTGCTGCGTTGATTGA+GGG + tig0034810:8078-8097 None:intergenic 50.0%
!! ACGGTTTGCTGCGTTGATTG+AGG + tig0034810:8079-8098 None:intergenic 50.0%
GCAGCGAAAACGAGGGTTAA+CGG + tig0034810:8098-8117 None:intergenic 50.0%
CAGAGCTGCAGAAAAACCAG+AGG + tig0034810:8672-8691 None:intergenic 50.0%
! TGCAGCTCTGTTTGGGACTT+TGG - tig0034810:8682-8701 Msa1453620:intron 50.0%
! AGCTCTGTTTGGGACTTTGG+AGG - tig0034810:8685-8704 Msa1453620:intron 50.0%
! GCTCTGTTTGGGACTTTGGA+GGG - tig0034810:8686-8705 Msa1453620:intron 50.0%
! CTCTGTTTGGGACTTTGGAG+GGG - tig0034810:8687-8706 Msa1453620:intron 50.0%
GTTTGGGAGTTTAGTAGGGG+AGG + tig0034810:8994-9013 None:intergenic 50.0%
AGGAGGAATCACAGGAAGCA+TGG - tig0034810:9259-9278 Msa1453620:intron 50.0%
! ATCACAGGAAGCATGGAAGC+AGG - tig0034810:9266-9285 Msa1453620:intron 50.0%
TGCTGCTGAGAATTCACCTG+AGG - tig0034810:9485-9504 Msa1453620:intron 50.0%
ACGGTCGATGACAGCAATTG+CGG + tig0034810:9845-9864 None:intergenic 50.0%
!! TGGCTAAAGTTTTGTGGCGG+CGG - tig0034810:9903-9922 Msa1453620:intron 50.0%
GGGCTTTACCTCTCCATTAG+AGG + tig0034810:10149-10168 None:intergenic 50.0%
GGATGTTGGGCTGATGTAAC+AGG - tig0034810:10366-10385 Msa1453620:CDS 50.0%
!! GGTTTGTTACTATCTGCGGG+TGG - tig0034810:10956-10975 Msa1453620:intron 50.0%
GCCCTCTTCTCTTGCTTTGA+AGG - tig0034810:11093-11112 Msa1453620:intron 50.0%
GCCCTTCAAAGCAAGAGAAG+AGG + tig0034810:11098-11117 None:intergenic 50.0%
CTCCCCTTCCAATCTTAGGT+AGG + tig0034810:11272-11291 None:intergenic 50.0%
GCTTCTATTTCATGGGACCG+TGG + tig0034810:11512-11531 None:intergenic 50.0%
ACCCACTAGACCTGCAGTAA+AGG - tig0034810:11570-11589 Msa1453620:intron 50.0%
CACCTTTACTGCAGGTCTAG+TGG + tig0034810:11575-11594 None:intergenic 50.0%
CTAGACCTGCAGTAAAGGTG+TGG - tig0034810:11575-11594 Msa1453620:intron 50.0%
ATTGGCAGGCTTCTGCAATC+AGG + tig0034810:11605-11624 None:intergenic 50.0%
AGAATACTTGGGCGATTGGC+AGG + tig0034810:11619-11638 None:intergenic 50.0%
GCCAATCGCCCAAGTATTCT+AGG - tig0034810:11619-11638 Msa1453620:intron 50.0%
GTTTGGCATTTGCAGTGGTG+CGG - tig0034810:12983-13002 Msa1453620:intron 50.0%
TCGTCAAGACTCGTTGCTGA+TGG - tig0034810:13324-13343 Msa1453620:CDS 50.0%
ATGGGTGGAAAAATCGAGCC+TGG - tig0034810:13363-13382 Msa1453620:CDS 50.0%
CGTAGCAGCAGCGAAAACGA+GGG + tig0034810:8105-8124 None:intergenic 55.0%
! GGACTTTGGAGGGGAGTAGA+GGG - tig0034810:8696-8715 Msa1453620:intron 55.0%
! GGAAGCATGGAAGCAGGCTT+TGG - tig0034810:9272-9291 Msa1453620:intron 55.0%
GCTGAGATCATCATCTGGGG+AGG + tig0034810:9535-9554 None:intergenic 55.0%
GGCTGATGTAACAGGGCTCA+TGG - tig0034810:10374-10393 Msa1453620:CDS 55.0%
!! CTTGCTTTGAAGGGCCAGAC+AGG - tig0034810:11103-11122 Msa1453620:intron 55.0%
AGAGGACGATAGTCAGCCCA+CGG - tig0034810:11492-11511 Msa1453620:intron 55.0%
GATGCCCACACCTTTACTGC+AGG + tig0034810:11583-11602 None:intergenic 55.0%
GTTGGGCTTGCAGCTATAGC+AGG - tig0034810:12288-12307 Msa1453620:intron 55.0%
CATTTGCAGTGGTGCGGTAG+CGG - tig0034810:12989-13008 Msa1453620:intron 55.0%
GCGTAGCAGCAGCGAAAACG+AGG + tig0034810:8106-8125 None:intergenic 60.0%
! GGGACTTTGGAGGGGAGTAG+AGG - tig0034810:8695-8714 Msa1453620:intron 60.0%
TGGAGGGGAGTAGAGGGCTT+TGG - tig0034810:8702-8721 Msa1453620:intron 60.0%
GGAGGGGAGTAGAGGGCTTT+GGG - tig0034810:8703-8722 Msa1453620:intron 60.0%
GAGGGGAGTAGAGGGCTTTG+GGG - tig0034810:8704-8723 Msa1453620:intron 60.0%
! AGGGGAGTAGAGGGCTTTGG+GGG - tig0034810:8705-8724 Msa1453620:intron 60.0%
!! AGTAGAGGGCTTTGGGGGGA+GGG - tig0034810:8710-8729 Msa1453620:intron 60.0%
!! GGGGAGTAGAGGGCTTTGGG+GGG - tig0034810:8706-8725 Msa1453620:intron 65.0%
!! GAGTAGAGGGCTTTGGGGGG+AGG - tig0034810:8709-8728 Msa1453620:intron 65.0%
!! GTAGAGGGCTTTGGGGGGAG+GGG - tig0034810:8711-8730 Msa1453620:intron 65.0%
! CTTTGGGGGGAGGGGAAGAG+AGG - tig0034810:8719-8738 Msa1453620:intron 65.0%
Chromosome Type Strat End Strand Name
tig0034810 gene 7752 13697 7752 ID=Msa1453620;Name=Msa1453620
tig0034810 mRNA 7752 13697 7752 ID=Msa1453620-mRNA-1;Parent=Msa1453620;Name=Msa1453620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181|1|1|1|0.83|0.71|7|470|308
tig0034810 exon 7752 8209 7752 ID=Msa1453620-mRNA-1:exon:19234;Parent=Msa1453620-mRNA-1
tig0034810 exon 8349 8451 8349 ID=Msa1453620-mRNA-1:exon:19233;Parent=Msa1453620-mRNA-1
tig0034810 exon 8969 8997 8969 ID=Msa1453620-mRNA-1:exon:19232;Parent=Msa1453620-mRNA-1
tig0034810 exon 9102 9148 9102 ID=Msa1453620-mRNA-1:exon:19231;Parent=Msa1453620-mRNA-1
tig0034810 exon 10325 10492 10325 ID=Msa1453620-mRNA-1:exon:19230;Parent=Msa1453620-mRNA-1
tig0034810 exon 11852 12236 11852 ID=Msa1453620-mRNA-1:exon:19229;Parent=Msa1453620-mRNA-1
tig0034810 exon 13310 13697 13310 ID=Msa1453620-mRNA-1:exon:19228;Parent=Msa1453620-mRNA-1
tig0034810 five_prime_UTR 13517 13697 13517 ID=Msa1453620-mRNA-1:five_prime_utr;Parent=Msa1453620-mRNA-1
tig0034810 CDS 13310 13516 13310 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 CDS 11852 12236 11852 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 CDS 10325 10492 10325 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 CDS 9102 9148 9102 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 CDS 8969 8997 8969 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 CDS 8361 8451 8361 ID=Msa1453620-mRNA-1:cds;Parent=Msa1453620-mRNA-1
tig0034810 three_prime_UTR 8349 8360 8349 ID=Msa1453620-mRNA-1:three_prime_utr;Parent=Msa1453620-mRNA-1
tig0034810 three_prime_UTR 7752 8209 7752 ID=Msa1453620-mRNA-1:three_prime_utr;Parent=Msa1453620-mRNA-1
Gene Sequence

>Msa1453620

ATGGCTTCGATGAGTTTCACCATGGATTCAGTTTCTGTGTTAAACCCTAAACTCAACCACACCCATCTCTCTCATTCTCCGAAGTTTCATCCTTTACTCAAACACCGCAACACCACTTTCAAACTCTCTCTTCCTCGTTATGCCCTCAATCAACGCAGCAAACCGTTAACCCTCGTTTTCGCTGCTGCTACGCCTCAACATGACTCTGATCATGGTGAAGTTGAGGTAGAGAAGGGGAATGATGTTAGTTCTGAGGAGGAATCACAGGAAGCATGGAAGCAGGCTTTGGATACATTCAAGGAACAAGCTTTGAAGCTACAAGGGGTTTCTCAAGAAGCCTATGAAGTGTATTCTAAGAAGGCCATTGTGGTTTTGCAAGATACTTCAGAACAGTTGAAGATACAGGCCGATAAGGCAAGACATGATTTGAGTGTTGTGGCGAAGGAAATCACTGAAGAAGGAAAAGAGTATTTCTCTTCTGCTGCTGAGAATTCACCTGAGGTGAAGGAAATTGTGGAAACTTTTACCTCCCCAGATGATGATCTCAGCAAAGTTTCTGGAGTTCGGGACTTTTATGTTGGTATACCCTATGGTTTGTTACTATCTGCGGGTGGCTTCCTTTCCTTTATGATAACAGGAAGCATTGCAGCAATAAGGTTTGGGGTGATTTTAGGTGGTGTGCTATTGGCTTTAAGCATTTCAAGTCTGAAATCATATAAAAAAGGACAGCCCTCTTCTCTTGCTTTGAAGGGCCAGACAGCTATAGCAGGTATCTTGTTTCTGCGTGAGATCAGCATATTAGGCAGAGGATCAACTTATTTCACTGCTTTGATCAGTGGTGCGGTAGCGGCATTTTATGTCTATAGACTGGTTTTAGAAGGTAAACCACAAAAAGGTTCAAACTTTGAAGGTGAAGCAGGAAACTAG

Protein sequence

>Msa1453620

MASMSFTMDSVSVLNPKLNHTHLSHSPKFHPLLKHRNTTFKLSLPRYALNQRSKPLTLVFAAATPQHDSDHGEVEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYKKGQPSSLALKGQTAIAGILFLREISILGRGSTYFTALISGAVAAFYVYRLVLEGKPQKGSNFEGEAGN*