Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956590 | A0A072TIL7 | 94.656 | 131 | 7 | 0 | 1 | 131 | 1 | 131 | 1.73e-42 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078110 | Msa0956590 | 0.800221 | 1.595203e-48 | -8.615850e-47 |
| Msa0608280 | Msa0956590 | 0.826963 | 2.032955e-54 | -8.615850e-47 |
| Msa0622930 | Msa0956590 | 0.815590 | 8.553348e-52 | -8.615850e-47 |
| Msa0655080 | Msa0956590 | 0.838285 | 3.149766e-57 | -8.615850e-47 |
| Msa0691350 | Msa0956590 | 0.819856 | 9.322712e-53 | -8.615850e-47 |
| Msa0700430 | Msa0956590 | 0.817617 | 3.004610e-52 | -8.615850e-47 |
| Msa0707870 | Msa0956590 | 0.805853 | 1.092495e-49 | -8.615850e-47 |
| Msa0811710 | Msa0956590 | 0.800158 | 1.643222e-48 | -8.615850e-47 |
| Msa0183960 | Msa0956590 | 0.810990 | 8.758575e-51 | -8.615850e-47 |
| Msa0216900 | Msa0956590 | 0.836051 | 1.173761e-56 | -8.615850e-47 |
| Msa0296100 | Msa0956590 | 0.811884 | 5.600720e-51 | -8.615850e-47 |
| Msa0334480 | Msa0956590 | 0.821555 | 3.793914e-53 | -8.615850e-47 |
| Msa0539570 | Msa0956590 | 0.822519 | 2.268088e-53 | -8.615850e-47 |
| Msa0561750 | Msa0956590 | 0.818674 | 1.732985e-52 | -8.615850e-47 |
| Msa0564000 | Msa0956590 | 0.812645 | 3.820515e-51 | -8.615850e-47 |
| Msa0577290 | Msa0956590 | 0.813472 | 2.516445e-51 | -8.615850e-47 |
| Msa0956580 | Msa0956590 | 0.899056 | 2.890013e-77 | -8.615850e-47 |
| Msa0956590 | Msa1038420 | 0.802175 | 6.354445e-49 | -8.615850e-47 |
| Msa0956590 | Msa1389990 | 0.805118 | 1.557819e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956590 | MtrunA17_Chr6g0472551 | 94.656 | 131 | 7 | 0 | 1 | 131 | 1 | 131 | 3.32e-46 | 155 |
| Msa0956590 | MtrunA17_Chr1g0203711 | 55.714 | 140 | 42 | 5 | 1 | 131 | 1 | 129 | 9.09e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGTTGGTGGGTGGTTC+TGG | 0.199441 | 6_3:+64286713 | None:intergenic |
| GTCGGCTTTCCGAGGTTATT+TGG | 0.252225 | 6_3:-64286393 | Msa0956590:intron |
| TTGGTGGGTGGTTCTGGTGG+TGG | 0.293579 | 6_3:+64286719 | None:intergenic |
| AACTTTCTCCGACGACTCTT+CGG | 0.424546 | 6_3:-64286761 | Msa0956590:CDS |
| GTGGTTCTGGTGGTGGATTA+CGG | 0.433997 | 6_3:+64286726 | None:intergenic |
| TTGTTGGTGGGTGGTTCTGG+TGG | 0.467901 | 6_3:+64286716 | None:intergenic |
| TGTTAGATTGACAAGTAATA+CGG | 0.469057 | 6_3:-64286504 | Msa0956590:CDS |
| TGCTGCTCATGCCGCCGCTG+AGG | 0.485155 | 6_3:-64286528 | Msa0956590:CDS |
| ACGGCTGGAGGAAATTCTGC+TGG | 0.494889 | 6_3:-64286485 | Msa0956590:CDS |
| GACTGGTCGGAGACGGTTGT+CGG | 0.496284 | 6_3:-64286444 | Msa0956590:CDS |
| CGACCAGTCGTCGGAGTTCG+AGG | 0.496448 | 6_3:+64286458 | None:intergenic |
| AGCGAGTGCAGCTTCAGCAA+CGG | 0.500718 | 6_3:+64286550 | None:intergenic |
| GGTCCTCGAACTCCGACGAC+TGG | 0.500976 | 6_3:-64286461 | Msa0956590:CDS |
| GAGTCGTCGGAGAAAGTTCA+TGG | 0.504928 | 6_3:+64286766 | None:intergenic |
| TCAGAGAAAGAAGAAGTTGA+AGG | 0.507739 | 6_3:+64286623 | None:intergenic |
| AGTAGCAGCAGCAACAGCAA+TGG | 0.516750 | 6_3:+64286577 | None:intergenic |
| CGGCTGGAGGAAATTCTGCT+GGG | 0.538919 | 6_3:-64286484 | Msa0956590:CDS |
| AAGATTCAGTCGGCTTTCCG+AGG | 0.566154 | 6_3:-64286401 | Msa0956590:CDS |
| CTCGAACTCCGACGACTGGT+CGG | 0.576655 | 6_3:-64286457 | Msa0956590:CDS |
| CAGAGAAAGAAGAAGTTGAA+GGG | 0.585671 | 6_3:+64286624 | None:intergenic |
| GAAAGCCGACTGAATCTTCA+CGG | 0.590040 | 6_3:+64286406 | None:intergenic |
| GAGTGCAGCTTCAGCAACGG+CGG | 0.594777 | 6_3:+64286553 | None:intergenic |
| AACCGTCTCCGACCAGTCGT+CGG | 0.595592 | 6_3:+64286449 | None:intergenic |
| AGATTGACAAGTAATACGGC+TGG | 0.600552 | 6_3:-64286500 | Msa0956590:CDS |
| TGCTGCCGTGAAGATTCAGT+CGG | 0.618990 | 6_3:-64286411 | Msa0956590:CDS |
| GGCTGGAGGAAATTCTGCTG+GGG | 0.636550 | 6_3:-64286483 | Msa0956590:CDS |
| TTGACAAGTAATACGGCTGG+AGG | 0.641296 | 6_3:-64286497 | Msa0956590:CDS |
| TTTCTCCGACGACTCTTCGG+CGG | 0.651007 | 6_3:-64286758 | Msa0956590:CDS |
| CAATCTAACAACCTCAGCGG+CGG | 0.652974 | 6_3:+64286517 | None:intergenic |
| GCTGGAGGAAATTCTGCTGG+GGG | 0.668144 | 6_3:-64286482 | Msa0956590:CDS |
| TGTTACATACCAAATAACCT+CGG | 0.675147 | 6_3:+64286384 | None:intergenic |
| TGTCAATCTAACAACCTCAG+CGG | 0.725025 | 6_3:+64286514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTATTTAATGAATTTTA+TGG | + | chr6_3:64286236-64286255 | None:intergenic | 10.0% |
| !!! | TATCTTATGTTAAATTTTAT+AGG | - | chr6_3:64286756-64286775 | Msa0956590:CDS | 10.0% |
| !!! | TACTTATTTAATGAATTTTA+TGG | + | chr6_3:64286236-64286255 | None:intergenic | 10.0% |
| !!! | TATCTTATGTTAAATTTTAT+AGG | - | chr6_3:64286756-64286775 | Msa0956590:CDS | 10.0% |
| !!! | TTATTTCTCATAAAAAGAAT+CGG | + | chr6_3:64285216-64285235 | None:intergenic | 15.0% |
| !! | TATCGAGTTTAAAAAAAAAT+TGG | - | chr6_3:64285366-64285385 | Msa0956590:intron | 15.0% |
| !!! | TATTTTTTAACAGAATTTGA+AGG | - | chr6_3:64285437-64285456 | Msa0956590:intron | 15.0% |
| !! | TCCATTAAAAAAAAAATTGA+AGG | - | chr6_3:64285467-64285486 | Msa0956590:intron | 15.0% |
| !!! | TCCTTCAATTTTTTTTTTAA+TGG | + | chr6_3:64285471-64285490 | None:intergenic | 15.0% |
| !! | AACTAAAAAGTAATTAATGA+TGG | - | chr6_3:64286143-64286162 | Msa0956590:intron | 15.0% |
| !! | CATTTAATAAATGATGTATT+TGG | + | chr6_3:64286337-64286356 | None:intergenic | 15.0% |
| !! | AAAGAATAAAAAACTAAGTA+TGG | + | chr6_3:64286503-64286522 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTTTTTTTTTTG+AGG | - | chr6_3:64286688-64286707 | Msa0956590:CDS | 15.0% |
| !!! | GAGATTTTTTTTTTTTTTGA+GGG | - | chr6_3:64286689-64286708 | Msa0956590:CDS | 15.0% |
| !!! | TTATTTCTCATAAAAAGAAT+CGG | + | chr6_3:64285216-64285235 | None:intergenic | 15.0% |
| !! | TATCGAGTTTAAAAAAAAAT+TGG | - | chr6_3:64285366-64285385 | Msa0956590:intron | 15.0% |
| !!! | TATTTTTTAACAGAATTTGA+AGG | - | chr6_3:64285437-64285456 | Msa0956590:intron | 15.0% |
| !! | TCCATTAAAAAAAAAATTGA+AGG | - | chr6_3:64285467-64285486 | Msa0956590:intron | 15.0% |
| !!! | TCCTTCAATTTTTTTTTTAA+TGG | + | chr6_3:64285471-64285490 | None:intergenic | 15.0% |
| !! | AACTAAAAAGTAATTAATGA+TGG | - | chr6_3:64286143-64286162 | Msa0956590:intron | 15.0% |
| !! | CATTTAATAAATGATGTATT+TGG | + | chr6_3:64286337-64286356 | None:intergenic | 15.0% |
| !! | AAAGAATAAAAAACTAAGTA+TGG | + | chr6_3:64286503-64286522 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTTTTTTTTTTG+AGG | - | chr6_3:64286688-64286707 | Msa0956590:CDS | 15.0% |
| !!! | GAGATTTTTTTTTTTTTTGA+GGG | - | chr6_3:64286689-64286708 | Msa0956590:CDS | 15.0% |
| !! | TATGAACTAAATACATATGA+TGG | - | chr6_3:64285270-64285289 | Msa0956590:intron | 20.0% |
| !! | TCAACAATTCAATTCTTTAA+TGG | + | chr6_3:64285498-64285517 | None:intergenic | 20.0% |
| !!! | AGAATTGAATTGTTGATTTT+AGG | - | chr6_3:64285502-64285521 | Msa0956590:intron | 20.0% |
| !! | AGGTAGTTATAGTTATTAAT+TGG | - | chr6_3:64285531-64285550 | Msa0956590:intron | 20.0% |
| !! | CTCAATTAAAAGAACAATAA+TGG | + | chr6_3:64285557-64285576 | None:intergenic | 20.0% |
| !! | AAAATTTAAAGAGTGACTAT+TGG | - | chr6_3:64285601-64285620 | Msa0956590:intron | 20.0% |
| !!! | TTTCGTATCAAGAATAATTT+TGG | - | chr6_3:64285626-64285645 | Msa0956590:intron | 20.0% |
| !! | TTCAACTAGAAAAATAGAAT+GGG | + | chr6_3:64285859-64285878 | None:intergenic | 20.0% |
| !! | TTTCAACTAGAAAAATAGAA+TGG | + | chr6_3:64285860-64285879 | None:intergenic | 20.0% |
| !!! | CTATTTTTCTAGTTGAAAAT+TGG | - | chr6_3:64285862-64285881 | Msa0956590:intron | 20.0% |
| !! | TAAAAAGTAATTAATGATGG+TGG | - | chr6_3:64286146-64286165 | Msa0956590:intron | 20.0% |
| !! | AAAAAGTAATTAATGATGGT+GGG | - | chr6_3:64286147-64286166 | Msa0956590:intron | 20.0% |
| !!! | TAAGCAAAAGTTGATTTTTT+AGG | + | chr6_3:64286362-64286381 | None:intergenic | 20.0% |
| !!! | ATGTGTCAAAATCAAAATTT+TGG | + | chr6_3:64286534-64286553 | None:intergenic | 20.0% |
| !! | TATGAACTAAATACATATGA+TGG | - | chr6_3:64285270-64285289 | Msa0956590:intron | 20.0% |
| !! | TCAACAATTCAATTCTTTAA+TGG | + | chr6_3:64285498-64285517 | None:intergenic | 20.0% |
| !!! | AGAATTGAATTGTTGATTTT+AGG | - | chr6_3:64285502-64285521 | Msa0956590:intron | 20.0% |
| !! | AGGTAGTTATAGTTATTAAT+TGG | - | chr6_3:64285531-64285550 | Msa0956590:intron | 20.0% |
| !! | CTCAATTAAAAGAACAATAA+TGG | + | chr6_3:64285557-64285576 | None:intergenic | 20.0% |
| !! | AAAATTTAAAGAGTGACTAT+TGG | - | chr6_3:64285601-64285620 | Msa0956590:intron | 20.0% |
| !!! | TTTCGTATCAAGAATAATTT+TGG | - | chr6_3:64285626-64285645 | Msa0956590:intron | 20.0% |
| !! | TTCAACTAGAAAAATAGAAT+GGG | + | chr6_3:64285859-64285878 | None:intergenic | 20.0% |
| !! | TTTCAACTAGAAAAATAGAA+TGG | + | chr6_3:64285860-64285879 | None:intergenic | 20.0% |
| !!! | CTATTTTTCTAGTTGAAAAT+TGG | - | chr6_3:64285862-64285881 | Msa0956590:intron | 20.0% |
| !! | TAAAAAGTAATTAATGATGG+TGG | - | chr6_3:64286146-64286165 | Msa0956590:intron | 20.0% |
| !! | AAAAAGTAATTAATGATGGT+GGG | - | chr6_3:64286147-64286166 | Msa0956590:intron | 20.0% |
| !!! | TAAGCAAAAGTTGATTTTTT+AGG | + | chr6_3:64286362-64286381 | None:intergenic | 20.0% |
| !!! | ATGTGTCAAAATCAAAATTT+TGG | + | chr6_3:64286534-64286553 | None:intergenic | 20.0% |
| !!! | TCTTTTGTCTTTTTTGTTGT+TGG | + | chr6_3:64284812-64284831 | None:intergenic | 25.0% |
| ! | ACAAAAAAGACAAAAGAACA+TGG | - | chr6_3:64284815-64284834 | Msa0956590:intron | 25.0% |
| ! | TGTTAGATTGACAAGTAATA+CGG | - | chr6_3:64285005-64285024 | Msa0956590:intron | 25.0% |
| ! | TAACTGTGACTAAAATTTCA+AGG | + | chr6_3:64285161-64285180 | None:intergenic | 25.0% |
| !! | GAGTAACATTTTTACTATGT+TGG | + | chr6_3:64285190-64285209 | None:intergenic | 25.0% |
| !! | ATATTTTGTGAGTGTGTAAA+TGG | - | chr6_3:64285773-64285792 | Msa0956590:intron | 25.0% |
| ! | AGTAAAAAAGAAAAGAGAAC+CGG | + | chr6_3:64285973-64285992 | None:intergenic | 25.0% |
| !! | AAGAGCATGTTAATCTAATA+TGG | + | chr6_3:64286003-64286022 | None:intergenic | 25.0% |
| !! | GTCAATGAATTTCATTTTGA+AGG | + | chr6_3:64286049-64286068 | None:intergenic | 25.0% |
| !! | ATTTTATGGAGTATGCAATT+TGG | + | chr6_3:64286222-64286241 | None:intergenic | 25.0% |
| ! | CATTAAATAAGTATTCCATC+CGG | - | chr6_3:64286243-64286262 | Msa0956590:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr6_3:64286265-64286284 | None:intergenic | 25.0% |
| !!! | TCTTTTGTCTTTTTTGTTGT+TGG | + | chr6_3:64284812-64284831 | None:intergenic | 25.0% |
| ! | ACAAAAAAGACAAAAGAACA+TGG | - | chr6_3:64284815-64284834 | Msa0956590:intron | 25.0% |
| ! | TGTTAGATTGACAAGTAATA+CGG | - | chr6_3:64285005-64285024 | Msa0956590:intron | 25.0% |
| ! | TAACTGTGACTAAAATTTCA+AGG | + | chr6_3:64285161-64285180 | None:intergenic | 25.0% |
| !! | GAGTAACATTTTTACTATGT+TGG | + | chr6_3:64285190-64285209 | None:intergenic | 25.0% |
| !! | ATATTTTGTGAGTGTGTAAA+TGG | - | chr6_3:64285773-64285792 | Msa0956590:intron | 25.0% |
| ! | AGTAAAAAAGAAAAGAGAAC+CGG | + | chr6_3:64285973-64285992 | None:intergenic | 25.0% |
| !! | AAGAGCATGTTAATCTAATA+TGG | + | chr6_3:64286003-64286022 | None:intergenic | 25.0% |
| !! | GTCAATGAATTTCATTTTGA+AGG | + | chr6_3:64286049-64286068 | None:intergenic | 25.0% |
| !! | ATTTTATGGAGTATGCAATT+TGG | + | chr6_3:64286222-64286241 | None:intergenic | 25.0% |
| ! | CATTAAATAAGTATTCCATC+CGG | - | chr6_3:64286243-64286262 | Msa0956590:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr6_3:64286265-64286284 | None:intergenic | 25.0% |
| !!! | TTGTCTTTTTTGTTGTTGGT+GGG | + | chr6_3:64284808-64284827 | None:intergenic | 30.0% |
| !!! | TTTGTCTTTTTTGTTGTTGG+TGG | + | chr6_3:64284809-64284828 | None:intergenic | 30.0% |
| TGTTACATACCAAATAACCT+CGG | + | chr6_3:64285128-64285147 | None:intergenic | 30.0% | |
| TTCTCATAAAAAGAATCGGA+TGG | + | chr6_3:64285212-64285231 | None:intergenic | 30.0% | |
| ! | CAATTTTATTGCTCGCTAAA+TGG | + | chr6_3:64285325-64285344 | None:intergenic | 30.0% |
| CATTTAGCGAGCAATAAAAT+TGG | - | chr6_3:64285323-64285342 | Msa0956590:intron | 30.0% | |
| !!! | GAATTGTTGATTTTAGGTGA+TGG | - | chr6_3:64285508-64285527 | Msa0956590:intron | 30.0% |
| !!! | ATTTTGGAGTAATGTTTGTG+TGG | - | chr6_3:64285642-64285661 | Msa0956590:intron | 30.0% |
| ! | TGCTTTGTAATTTTCAACAC+CGG | - | chr6_3:64285951-64285970 | Msa0956590:intron | 30.0% |
| !! | TTTTGAAGGAGACAAAGAAT+TGG | + | chr6_3:64286035-64286054 | None:intergenic | 30.0% |
| GACTTAAGATCCTCTTTATT+TGG | - | chr6_3:64286066-64286085 | Msa0956590:intron | 30.0% | |
| ! | CTTTTGCTTATAATAGTGAC+CGG | - | chr6_3:64286372-64286391 | Msa0956590:intron | 30.0% |
| !!! | AACTTAGGACCATTAGTTTT+TGG | - | chr6_3:64286589-64286608 | Msa0956590:CDS | 30.0% |
| !!! | TTGTCTTTTTTGTTGTTGGT+GGG | + | chr6_3:64284808-64284827 | None:intergenic | 30.0% |
| !!! | TTTGTCTTTTTTGTTGTTGG+TGG | + | chr6_3:64284809-64284828 | None:intergenic | 30.0% |
| TGTTACATACCAAATAACCT+CGG | + | chr6_3:64285128-64285147 | None:intergenic | 30.0% | |
| TTCTCATAAAAAGAATCGGA+TGG | + | chr6_3:64285212-64285231 | None:intergenic | 30.0% | |
| ! | CAATTTTATTGCTCGCTAAA+TGG | + | chr6_3:64285325-64285344 | None:intergenic | 30.0% |
| CATTTAGCGAGCAATAAAAT+TGG | - | chr6_3:64285323-64285342 | Msa0956590:intron | 30.0% | |
| !!! | GAATTGTTGATTTTAGGTGA+TGG | - | chr6_3:64285508-64285527 | Msa0956590:intron | 30.0% |
| !!! | ATTTTGGAGTAATGTTTGTG+TGG | - | chr6_3:64285642-64285661 | Msa0956590:intron | 30.0% |
| ! | TGCTTTGTAATTTTCAACAC+CGG | - | chr6_3:64285951-64285970 | Msa0956590:intron | 30.0% |
| !! | TTTTGAAGGAGACAAAGAAT+TGG | + | chr6_3:64286035-64286054 | None:intergenic | 30.0% |
| GACTTAAGATCCTCTTTATT+TGG | - | chr6_3:64286066-64286085 | Msa0956590:intron | 30.0% | |
| ! | CTTTTGCTTATAATAGTGAC+CGG | - | chr6_3:64286372-64286391 | Msa0956590:intron | 30.0% |
| !!! | AACTTAGGACCATTAGTTTT+TGG | - | chr6_3:64286589-64286608 | Msa0956590:CDS | 30.0% |
| ! | TGAAGGGTCAGAATTTTTGT+TGG | + | chr6_3:64284872-64284891 | None:intergenic | 35.0% |
| CAGAGAAAGAAGAAGTTGAA+GGG | + | chr6_3:64284888-64284907 | None:intergenic | 35.0% | |
| TCAGAGAAAGAAGAAGTTGA+AGG | + | chr6_3:64284889-64284908 | None:intergenic | 35.0% | |
| TTGGTCTACCTTAGTTGTTT+CGG | - | chr6_3:64285342-64285361 | Msa0956590:intron | 35.0% | |
| AGAGTAGACAAAAAGATGTG+AGG | - | chr6_3:64285411-64285430 | Msa0956590:intron | 35.0% | |
| !!! | TTGTTGATTTTAGGTGATGG+AGG | - | chr6_3:64285511-64285530 | Msa0956590:intron | 35.0% |
| GGAGAGAATACCAAATAAAG+AGG | + | chr6_3:64286079-64286098 | None:intergenic | 35.0% | |
| TTCTCTCCATTTCATCCATT+TGG | - | chr6_3:64286091-64286110 | Msa0956590:intron | 35.0% | |
| ATCTCTCCAAATGGATGAAA+TGG | + | chr6_3:64286100-64286119 | None:intergenic | 35.0% | |
| TGTGTCTATATCTCTCCAAA+TGG | + | chr6_3:64286109-64286128 | None:intergenic | 35.0% | |
| ! | ACTATGGAGTACAGTGTTTT+AGG | - | chr6_3:64286412-64286431 | Msa0956590:CDS | 35.0% |
| !! | CTATTCTAAGGCAAAGTTGT+CGG | + | chr6_3:64286449-64286468 | None:intergenic | 35.0% |
| ! | TGCCTTAGAATAGTGTCATT+TGG | - | chr6_3:64286456-64286475 | Msa0956590:CDS | 35.0% |
| GTCCAAATGACACTATTCTA+AGG | + | chr6_3:64286461-64286480 | None:intergenic | 35.0% | |
| ! | GTTTGCACTTGTTAGAACTT+AGG | - | chr6_3:64286574-64286593 | Msa0956590:CDS | 35.0% |
| ATACACGCACCAAAAACTAA+TGG | + | chr6_3:64286601-64286620 | None:intergenic | 35.0% | |
| ! | TGAAGGGTCAGAATTTTTGT+TGG | + | chr6_3:64284872-64284891 | None:intergenic | 35.0% |
| CAGAGAAAGAAGAAGTTGAA+GGG | + | chr6_3:64284888-64284907 | None:intergenic | 35.0% | |
| TCAGAGAAAGAAGAAGTTGA+AGG | + | chr6_3:64284889-64284908 | None:intergenic | 35.0% | |
| TTGGTCTACCTTAGTTGTTT+CGG | - | chr6_3:64285342-64285361 | Msa0956590:intron | 35.0% | |
| AGAGTAGACAAAAAGATGTG+AGG | - | chr6_3:64285411-64285430 | Msa0956590:intron | 35.0% | |
| !!! | TTGTTGATTTTAGGTGATGG+AGG | - | chr6_3:64285511-64285530 | Msa0956590:intron | 35.0% |
| GGAGAGAATACCAAATAAAG+AGG | + | chr6_3:64286079-64286098 | None:intergenic | 35.0% | |
| TTCTCTCCATTTCATCCATT+TGG | - | chr6_3:64286091-64286110 | Msa0956590:intron | 35.0% | |
| ATCTCTCCAAATGGATGAAA+TGG | + | chr6_3:64286100-64286119 | None:intergenic | 35.0% | |
| TGTGTCTATATCTCTCCAAA+TGG | + | chr6_3:64286109-64286128 | None:intergenic | 35.0% | |
| ! | ACTATGGAGTACAGTGTTTT+AGG | - | chr6_3:64286412-64286431 | Msa0956590:CDS | 35.0% |
| !! | CTATTCTAAGGCAAAGTTGT+CGG | + | chr6_3:64286449-64286468 | None:intergenic | 35.0% |
| ! | TGCCTTAGAATAGTGTCATT+TGG | - | chr6_3:64286456-64286475 | Msa0956590:CDS | 35.0% |
| GTCCAAATGACACTATTCTA+AGG | + | chr6_3:64286461-64286480 | None:intergenic | 35.0% | |
| ! | GTTTGCACTTGTTAGAACTT+AGG | - | chr6_3:64286574-64286593 | Msa0956590:CDS | 35.0% |
| ATACACGCACCAAAAACTAA+TGG | + | chr6_3:64286601-64286620 | None:intergenic | 35.0% | |
| !!! | TCTTTTTTGTTGTTGGTGGG+TGG | + | chr6_3:64284805-64284824 | None:intergenic | 40.0% |
| TGTCAATCTAACAACCTCAG+CGG | + | chr6_3:64284998-64285017 | None:intergenic | 40.0% | |
| AGATTGACAAGTAATACGGC+TGG | - | chr6_3:64285009-64285028 | Msa0956590:intron | 40.0% | |
| CTCGATATCCGAAACAACTA+AGG | + | chr6_3:64285353-64285372 | None:intergenic | 40.0% | |
| GTCAAACAAGTACAGTGATG+TGG | + | chr6_3:64285811-64285830 | None:intergenic | 40.0% | |
| AGTGTGTCCCACTATTAAGT+GGG | + | chr6_3:64286174-64286193 | None:intergenic | 40.0% | |
| TAGTGTGTCCCACTATTAAG+TGG | + | chr6_3:64286175-64286194 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+TGG | + | chr6_3:64286376-64286395 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6_3:64286375-64286394 | Msa0956590:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr6_3:64286376-64286395 | Msa0956590:intron | 40.0% | |
| CTGTACTCCATAGTCTAAAC+TGG | + | chr6_3:64286406-64286425 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTGTTGTTGGTGGG+TGG | + | chr6_3:64284805-64284824 | None:intergenic | 40.0% |
| TGTCAATCTAACAACCTCAG+CGG | + | chr6_3:64284998-64285017 | None:intergenic | 40.0% | |
| AGATTGACAAGTAATACGGC+TGG | - | chr6_3:64285009-64285028 | Msa0956590:intron | 40.0% | |
| CTCGATATCCGAAACAACTA+AGG | + | chr6_3:64285353-64285372 | None:intergenic | 40.0% | |
| GTCAAACAAGTACAGTGATG+TGG | + | chr6_3:64285811-64285830 | None:intergenic | 40.0% | |
| AGTGTGTCCCACTATTAAGT+GGG | + | chr6_3:64286174-64286193 | None:intergenic | 40.0% | |
| TAGTGTGTCCCACTATTAAG+TGG | + | chr6_3:64286175-64286194 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+TGG | + | chr6_3:64286376-64286395 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6_3:64286375-64286394 | Msa0956590:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr6_3:64286376-64286395 | Msa0956590:intron | 40.0% | |
| CTGTACTCCATAGTCTAAAC+TGG | + | chr6_3:64286406-64286425 | None:intergenic | 40.0% | |
| AACTTTCTCCGACGACTCTT+CGG | - | chr6_3:64284748-64284767 | Msa0956590:intron | 45.0% | |
| TTGACAAGTAATACGGCTGG+AGG | - | chr6_3:64285012-64285031 | Msa0956590:intron | 45.0% | |
| GAAAGCCGACTGAATCTTCA+CGG | + | chr6_3:64285106-64285125 | None:intergenic | 45.0% | |
| !! | GGGAGTACCAGTTTAGACTA+TGG | - | chr6_3:64286396-64286415 | Msa0956590:CDS | 45.0% |
| !! | TTCTAAGGCAAAGTTGTCGG+TGG | + | chr6_3:64286446-64286465 | None:intergenic | 45.0% |
| AACTTTCTCCGACGACTCTT+CGG | - | chr6_3:64284748-64284767 | Msa0956590:intron | 45.0% | |
| TTGACAAGTAATACGGCTGG+AGG | - | chr6_3:64285012-64285031 | Msa0956590:intron | 45.0% | |
| GAAAGCCGACTGAATCTTCA+CGG | + | chr6_3:64285106-64285125 | None:intergenic | 45.0% | |
| !! | GGGAGTACCAGTTTAGACTA+TGG | - | chr6_3:64286396-64286415 | Msa0956590:CDS | 45.0% |
| !! | TTCTAAGGCAAAGTTGTCGG+TGG | + | chr6_3:64286446-64286465 | None:intergenic | 45.0% |
| !!! | AGAATTTTTTAATATTTTTT+TGG | - | chr6_3:64285891-64285910 | Msa0956590:intron | 5.0% |
| !!! | AGAATTTTTTAATATTTTTT+TGG | - | chr6_3:64285891-64285910 | Msa0956590:intron | 5.0% |
| !! | GTGGTTCTGGTGGTGGATTA+CGG | + | chr6_3:64284786-64284805 | None:intergenic | 50.0% |
| ! | TTGTTGTTGGTGGGTGGTTC+TGG | + | chr6_3:64284799-64284818 | None:intergenic | 50.0% |
| AGTAGCAGCAGCAACAGCAA+TGG | + | chr6_3:64284935-64284954 | None:intergenic | 50.0% | |
| CAATCTAACAACCTCAGCGG+CGG | + | chr6_3:64284995-64285014 | None:intergenic | 50.0% | |
| TGCTGCCGTGAAGATTCAGT+CGG | - | chr6_3:64285098-64285117 | Msa0956590:intron | 50.0% | |
| ! | AAGATTCAGTCGGCTTTCCG+AGG | - | chr6_3:64285108-64285127 | Msa0956590:intron | 50.0% |
| ! | GTCGGCTTTCCGAGGTTATT+TGG | - | chr6_3:64285116-64285135 | Msa0956590:intron | 50.0% |
| TGGTGGGACCCACTTAATAG+TGG | - | chr6_3:64286163-64286182 | Msa0956590:intron | 50.0% | |
| GGTGGGACCCACTTAATAGT+GGG | - | chr6_3:64286164-64286183 | Msa0956590:intron | 50.0% | |
| GTCTAAACTGGTACTCCCTC+CGG | + | chr6_3:64286394-64286413 | None:intergenic | 50.0% | |
| GGCAAAGTTGTCGGTGGAAA+TGG | + | chr6_3:64286440-64286459 | None:intergenic | 50.0% | |
| !! | GTGGTTCTGGTGGTGGATTA+CGG | + | chr6_3:64284786-64284805 | None:intergenic | 50.0% |
| ! | TTGTTGTTGGTGGGTGGTTC+TGG | + | chr6_3:64284799-64284818 | None:intergenic | 50.0% |
| AGTAGCAGCAGCAACAGCAA+TGG | + | chr6_3:64284935-64284954 | None:intergenic | 50.0% | |
| CAATCTAACAACCTCAGCGG+CGG | + | chr6_3:64284995-64285014 | None:intergenic | 50.0% | |
| TGCTGCCGTGAAGATTCAGT+CGG | - | chr6_3:64285098-64285117 | Msa0956590:intron | 50.0% | |
| ! | AAGATTCAGTCGGCTTTCCG+AGG | - | chr6_3:64285108-64285127 | Msa0956590:intron | 50.0% |
| ! | GTCGGCTTTCCGAGGTTATT+TGG | - | chr6_3:64285116-64285135 | Msa0956590:intron | 50.0% |
| TGGTGGGACCCACTTAATAG+TGG | - | chr6_3:64286163-64286182 | Msa0956590:intron | 50.0% | |
| GGTGGGACCCACTTAATAGT+GGG | - | chr6_3:64286164-64286183 | Msa0956590:intron | 50.0% | |
| GTCTAAACTGGTACTCCCTC+CGG | + | chr6_3:64286394-64286413 | None:intergenic | 50.0% | |
| GGCAAAGTTGTCGGTGGAAA+TGG | + | chr6_3:64286440-64286459 | None:intergenic | 50.0% | |
| TTTCTCCGACGACTCTTCGG+CGG | - | chr6_3:64284751-64284770 | Msa0956590:intron | 55.0% | |
| ! | TTTTGCCGCCGAAGAGTCGT+CGG | + | chr6_3:64284759-64284778 | None:intergenic | 55.0% |
| !! | TTGTTGGTGGGTGGTTCTGG+TGG | + | chr6_3:64284796-64284815 | None:intergenic | 55.0% |
| AGCGAGTGCAGCTTCAGCAA+CGG | + | chr6_3:64284962-64284981 | None:intergenic | 55.0% | |
| ACGGCTGGAGGAAATTCTGC+TGG | - | chr6_3:64285024-64285043 | Msa0956590:intron | 55.0% | |
| CGGCTGGAGGAAATTCTGCT+GGG | - | chr6_3:64285025-64285044 | Msa0956590:intron | 55.0% | |
| GGCTGGAGGAAATTCTGCTG+GGG | - | chr6_3:64285026-64285045 | Msa0956590:intron | 55.0% | |
| GCTGGAGGAAATTCTGCTGG+GGG | - | chr6_3:64285027-64285046 | Msa0956590:intron | 55.0% | |
| TTTCTCCGACGACTCTTCGG+CGG | - | chr6_3:64284751-64284770 | Msa0956590:intron | 55.0% | |
| ! | TTTTGCCGCCGAAGAGTCGT+CGG | + | chr6_3:64284759-64284778 | None:intergenic | 55.0% |
| !! | TTGTTGGTGGGTGGTTCTGG+TGG | + | chr6_3:64284796-64284815 | None:intergenic | 55.0% |
| AGCGAGTGCAGCTTCAGCAA+CGG | + | chr6_3:64284962-64284981 | None:intergenic | 55.0% | |
| ACGGCTGGAGGAAATTCTGC+TGG | - | chr6_3:64285024-64285043 | Msa0956590:intron | 55.0% | |
| CGGCTGGAGGAAATTCTGCT+GGG | - | chr6_3:64285025-64285044 | Msa0956590:intron | 55.0% | |
| GGCTGGAGGAAATTCTGCTG+GGG | - | chr6_3:64285026-64285045 | Msa0956590:intron | 55.0% | |
| GCTGGAGGAAATTCTGCTGG+GGG | - | chr6_3:64285027-64285046 | Msa0956590:intron | 55.0% | |
| !! | TTGGTGGGTGGTTCTGGTGG+TGG | + | chr6_3:64284793-64284812 | None:intergenic | 60.0% |
| GAGTGCAGCTTCAGCAACGG+CGG | + | chr6_3:64284959-64284978 | None:intergenic | 60.0% | |
| CTCGAACTCCGACGACTGGT+CGG | - | chr6_3:64285052-64285071 | Msa0956590:intron | 60.0% | |
| AACCGTCTCCGACCAGTCGT+CGG | + | chr6_3:64285063-64285082 | None:intergenic | 60.0% | |
| ! | GACTGGTCGGAGACGGTTGT+CGG | - | chr6_3:64285065-64285084 | Msa0956590:intron | 60.0% |
| !! | TTGGTGGGTGGTTCTGGTGG+TGG | + | chr6_3:64284793-64284812 | None:intergenic | 60.0% |
| GAGTGCAGCTTCAGCAACGG+CGG | + | chr6_3:64284959-64284978 | None:intergenic | 60.0% | |
| CTCGAACTCCGACGACTGGT+CGG | - | chr6_3:64285052-64285071 | Msa0956590:intron | 60.0% | |
| AACCGTCTCCGACCAGTCGT+CGG | + | chr6_3:64285063-64285082 | None:intergenic | 60.0% | |
| ! | GACTGGTCGGAGACGGTTGT+CGG | - | chr6_3:64285065-64285084 | Msa0956590:intron | 60.0% |
| GGTCCTCGAACTCCGACGAC+TGG | - | chr6_3:64285048-64285067 | Msa0956590:intron | 65.0% | |
| CGACCAGTCGTCGGAGTTCG+AGG | + | chr6_3:64285054-64285073 | None:intergenic | 65.0% | |
| ! | CTCCGACGACTGGTCGGAGA+CGG | - | chr6_3:64285058-64285077 | Msa0956590:intron | 65.0% |
| GGTCCTCGAACTCCGACGAC+TGG | - | chr6_3:64285048-64285067 | Msa0956590:intron | 65.0% | |
| CGACCAGTCGTCGGAGTTCG+AGG | + | chr6_3:64285054-64285073 | None:intergenic | 65.0% | |
| ! | CTCCGACGACTGGTCGGAGA+CGG | - | chr6_3:64285058-64285077 | Msa0956590:intron | 65.0% |
| TGCTGCTCATGCCGCCGCTG+AGG | - | chr6_3:64284981-64285000 | Msa0956590:intron | 70.0% | |
| TGCTGCTCATGCCGCCGCTG+AGG | - | chr6_3:64284981-64285000 | Msa0956590:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 64284745 | 64286786 | 64284745 | ID=Msa0956590;Name=Msa0956590 |
| chr6_3 | mRNA | 64284745 | 64286786 | 64284745 | ID=Msa0956590-mRNA-1;Parent=Msa0956590;Name=Msa0956590-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.5|1|1|2|0|133 |
| chr6_3 | exon | 64286394 | 64286786 | 64286394 | ID=Msa0956590-mRNA-1:exon:12267;Parent=Msa0956590-mRNA-1 |
| chr6_3 | exon | 64284745 | 64284753 | 64284745 | ID=Msa0956590-mRNA-1:exon:12266;Parent=Msa0956590-mRNA-1 |
| chr6_3 | CDS | 64286394 | 64286786 | 64286394 | ID=Msa0956590-mRNA-1:cds;Parent=Msa0956590-mRNA-1 |
| chr6_3 | CDS | 64284745 | 64284753 | 64284745 | ID=Msa0956590-mRNA-1:cds;Parent=Msa0956590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
