AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577290 MtrunA17_Chr8g0377941 94.937 474 20 3 1 472 1 472 0.0 906
Msa0577290 MtrunA17_Chr8g0377921 62.526 475 146 9 6 461 3 464 0.0 581
Msa0577290 MtrunA17_Chr3g0121991 57.787 488 167 11 4 467 76 548 0.0 541
Msa0577290 MtrunA17_Chr3g0122001 57.173 481 171 11 4 460 483 952 3.05e-179 526
Msa0577290 MtrunA17_Chr3g0122001 56.327 490 176 12 4 469 3 478 5.85e-176 518
Msa0577290 MtrunA17_Chr5g0414331 39.149 470 245 13 3 458 9 451 6.84e-107 325
Msa0577290 MtrunA17_Chr5g0414321 38.689 473 247 13 7 464 11 455 1.33e-103 317
Msa0577290 MtrunA17_Chr1g0207981 37.787 479 258 13 7 462 13 474 2.00e-100 309
Msa0577290 MtrunA17_Chr6g0464881 39.746 473 241 14 7 462 11 456 2.65e-100 308
Msa0577290 MtrunA17_Chr6g0464921 40.717 474 242 14 4 462 8 457 1.48e-99 306
Msa0577290 MtrunA17_Chr6g0464871 40.558 466 245 15 3 457 19 463 1.65e-99 306
Msa0577290 MtrunA17_Chr6g0464841 39.957 468 237 13 7 457 11 451 1.19e-97 301
Msa0577290 MtrunA17_Chr6g0464861 39.530 468 246 14 3 457 7 450 7.41e-97 299
Msa0577290 MtrunA17_Chr7g0250001 38.983 472 242 13 7 461 6 448 2.49e-93 290
Msa0577290 MtrunA17_Chr3g0098111 36.421 475 267 12 7 460 9 469 5.51e-93 290
Msa0577290 MtrunA17_Chr8g0380531 37.844 473 258 14 3 460 6 457 4.00e-92 287
Msa0577290 MtrunA17_Chr4g0053501 34.728 478 272 12 7 464 11 468 7.94e-88 277
Msa0577290 MtrunA17_Chr1g0207861 37.037 486 269 13 2 466 3 472 8.23e-87 274
Msa0577290 MtrunA17_Chr1g0161351 37.131 474 269 11 5 460 35 497 9.95e-87 275
Msa0577290 MtrunA17_Chr7g0249981 38.136 472 246 16 7 461 25 467 2.51e-86 273
Msa0577290 MtrunA17_Chr7g0249931 38.055 473 247 17 7 461 40 484 4.07e-86 272
Msa0577290 MtrunA17_Chr4g0053321 35.789 475 269 12 8 464 27 483 6.45e-84 267
Msa0577290 MtrunA17_Chr8g0365811 35.908 479 264 14 8 460 496 957 2.92e-80 268
Msa0577290 MtrunA17_Chr8g0365811 35.270 482 269 12 7 460 9 475 3.62e-78 262
Msa0577290 MtrunA17_Chr1g0207971 34.979 486 256 15 7 466 8 459 3.54e-79 253
Msa0577290 MtrunA17_Chr1g0207951 34.958 472 280 12 7 465 656 1113 1.85e-78 265
Msa0577290 MtrunA17_Chr1g0207951 34.232 482 254 11 7 460 124 570 3.68e-77 261
Msa0577290 MtrunA17_Chr5g0393591 33.262 469 248 14 7 460 17 435 2.15e-75 243
Msa0577290 MtrunA17_Chr1g0207831 33.898 472 276 10 8 460 9 463 1.51e-74 242
Msa0577290 MtrunA17_Chr5g0401721 31.120 482 285 14 8 461 9 471 1.23e-73 239
Msa0577290 MtrunA17_Chr1g0207931 33.403 476 225 14 7 460 92 497 5.04e-69 228
Msa0577290 MtrunA17_Chr7g0249961 47.009 234 103 6 242 461 34 260 5.96e-63 205
Msa0577290 MtrunA17_Chr3g0118671 29.592 490 297 12 7 465 6 478 6.10e-62 209
Msa0577290 MtrunA17_Chr1g0207881 31.356 472 211 11 7 460 8 384 1.39e-60 203
Msa0577290 MtrunA17_Chr3g0118771 29.878 492 293 15 7 465 21 493 1.23e-58 201
Msa0577290 MtrunA17_Chr5g0431441 30.544 478 280 12 7 461 18 466 1.39e-58 200
Msa0577290 MtrunA17_Chr2g0278711 30.864 486 288 14 7 462 11 478 3.89e-58 199
Msa0577290 MtrunA17_Chr5g0426431 30.550 491 285 15 7 463 12 480 6.97e-58 198
Msa0577290 MtrunA17_Chr3g0118711 29.495 495 291 14 7 465 13 485 7.53e-58 198
Msa0577290 MtrunA17_Chr6g0454341 29.615 493 299 15 2 463 5 480 7.67e-58 198
Msa0577290 MtrunA17_Chr5g0431421 29.895 475 278 14 7 461 10 449 2.94e-57 196
Msa0577290 MtrunA17_Chr3g0106231 30.670 463 285 13 7 461 18 452 4.92e-57 196
Msa0577290 MtrunA17_Chr8g0336331 29.637 496 294 14 2 463 5 479 5.27e-57 196
Msa0577290 MtrunA17_Chr5g0431361 29.895 475 279 15 7 460 12 453 7.59e-57 195
Msa0577290 MtrunA17_Chr5g0431401 29.247 465 292 14 7 460 10 448 8.05e-56 192
Msa0577290 MtrunA17_Chr6g0454301 29.577 497 294 16 2 463 258 733 4.53e-55 196
Msa0577290 MtrunA17_Chr6g0454301 33.491 212 127 3 255 459 24 228 4.96e-33 132
Msa0577290 MtrunA17_Chr3g0118701 29.175 497 290 15 7 465 15 487 6.57e-55 191
Msa0577290 MtrunA17_Chr3g0092641 30.266 489 287 17 7 462 12 479 2.14e-53 186
Msa0577290 MtrunA17_Chr3g0118691 29.039 489 301 15 7 465 15 487 2.85e-53 186
Msa0577290 MtrunA17_Chr6g0454181 29.960 494 288 13 7 463 10 482 4.70e-53 185
Msa0577290 MtrunA17_Chr7g0243631 29.719 498 290 17 3 460 9 486 5.26e-53 186
Msa0577290 MtrunA17_Chr3g0078841 29.796 490 292 15 7 463 10 480 7.26e-53 185
Msa0577290 MtrunA17_Chr7g0218811 29.806 463 284 14 7 458 15 447 2.19e-52 183
Msa0577290 MtrunA17_Chr4g0050341 29.124 491 288 14 1 452 13 482 3.65e-52 183
Msa0577290 MtrunA17_Chr6g0454191 30.444 496 284 16 7 463 10 483 5.39e-52 182
Msa0577290 MtrunA17_Chr7g0243681 30.522 498 283 19 2 460 6 479 5.86e-52 182
Msa0577290 MtrunA17_Chr5g0431371 29.053 475 280 15 7 460 10 448 2.69e-51 180
Msa0577290 MtrunA17_Chr5g0412111 30.146 481 285 15 7 460 5 461 2.87e-51 180
Msa0577290 MtrunA17_Chr3g0118721 35.314 303 167 7 180 465 4 294 4.23e-51 175
Msa0577290 MtrunA17_Chr6g0454321 28.778 483 288 14 2 449 5 466 1.96e-50 181
Msa0577290 MtrunA17_Chr6g0454361 29.508 488 298 16 7 463 11 483 2.18e-50 178
Msa0577290 MtrunA17_Chr3g0112771 31.423 471 279 14 6 461 11 452 3.29e-50 177
Msa0577290 MtrunA17_Chr5g0432731 33.333 303 189 5 164 461 3 297 6.94e-50 172
Msa0577290 MtrunA17_Chr3g0112761 30.561 481 270 15 7 461 8 450 7.99e-50 176
Msa0577290 MtrunA17_Chr7g0217881 30.864 486 276 17 7 463 10 464 1.59e-49 176
Msa0577290 MtrunA17_Chr7g0218791 29.873 472 277 17 7 458 5 442 1.62e-49 175
Msa0577290 MtrunA17_Chr7g0218831 28.758 459 291 13 7 457 6 436 4.68e-49 174
Msa0577290 MtrunA17_Chr6g0454331 28.916 498 302 14 1 463 1 481 1.43e-48 173
Msa0577290 MtrunA17_Chr4g0032331 29.670 455 264 15 5 436 6 427 2.10e-48 172
Msa0577290 MtrunA17_Chr6g0454401 28.911 505 284 19 7 465 10 485 2.75e-48 172
Msa0577290 MtrunA17_Chr7g0218821 28.541 473 288 15 7 458 5 448 2.87e-48 172
Msa0577290 MtrunA17_Chr6g0454291 30.677 502 286 18 1 463 1 479 3.31e-48 172
Msa0577290 MtrunA17_Chr7g0243771 28.398 493 291 15 7 460 6 475 6.18e-48 172
Msa0577290 MtrunA17_Chr3g0106251 38.281 256 153 4 219 472 52 304 7.34e-48 167
Msa0577290 MtrunA17_Chr6g0454201 29.637 496 287 15 7 463 11 483 7.44e-48 171
Msa0577290 MtrunA17_Chr8g0377911 55.405 148 60 3 1 148 1 142 1.11e-47 161
Msa0577290 MtrunA17_Chr6g0454261 28.715 498 289 15 7 463 10 482 1.19e-47 171
Msa0577290 MtrunA17_Chr6g0454151 28.291 509 277 16 7 464 10 481 1.44e-47 171
Msa0577290 MtrunA17_Chr7g0243801 31.452 372 217 11 115 460 117 476 2.89e-47 170
Msa0577290 MtrunA17_Chr7g0265101 31.122 392 221 12 110 467 117 493 3.56e-47 170
Msa0577290 MtrunA17_Chr5g0412131 29.630 486 282 15 7 460 12 469 4.24e-47 169
Msa0577290 MtrunA17_Chr7g0218841 28.540 459 293 13 7 457 6 437 4.63e-47 168
Msa0577290 MtrunA17_Chr7g0243951 28.283 495 302 16 2 460 6 483 5.42e-47 169
Msa0577290 MtrunA17_Chr5g0419771 28.343 501 290 17 7 461 36 513 6.35e-47 169
Msa0577290 MtrunA17_Chr5g0412101 29.243 489 281 15 7 460 12 470 1.04e-46 168
Msa0577290 MtrunA17_Chr3g0118661 29.098 488 289 14 7 459 13 478 1.10e-46 168
Msa0577290 MtrunA17_Chr6g0453951 28.112 498 294 17 7 464 57 530 2.21e-46 168
Msa0577290 MtrunA17_Chr8g0359821 28.283 495 293 14 7 463 10 480 6.23e-46 166
Msa0577290 MtrunA17_Chr5g0426401 35.987 314 167 11 168 462 14 312 9.12e-46 161
Msa0577290 MtrunA17_Chr7g0265051 28.571 497 305 17 7 467 9 491 1.37e-45 166
Msa0577290 MtrunA17_Chr3g0118751 27.479 484 286 15 7 465 6 449 1.54e-45 164
Msa0577290 MtrunA17_Chr7g0243871 39.231 260 135 7 220 460 217 472 1.95e-45 165
Msa0577290 MtrunA17_Chr8g0361371 28.455 492 292 16 1 457 1 467 3.96e-45 164
Msa0577290 MtrunA17_Chr8g0335141 29.289 478 280 12 8 453 10 461 4.84e-45 164
Msa0577290 MtrunA17_Chr5g0423981 28.778 483 273 17 7 463 10 447 1.74e-44 161
Msa0577290 MtrunA17_Chr6g0454141 27.655 499 293 16 7 463 10 482 2.04e-44 162
Msa0577290 MtrunA17_Chr6g0449931 38.846 260 126 7 219 453 209 460 2.95e-44 161
Msa0577290 MtrunA17_Chr6g0454131 29.459 499 283 17 7 463 10 481 3.25e-44 161
Msa0577290 MtrunA17_Chr6g0459311 29.053 475 284 14 8 453 14 464 3.89e-44 161
Msa0577290 MtrunA17_Chr6g0454121 29.259 499 284 17 7 463 10 481 4.43e-44 161
Msa0577290 MtrunA17_Chr7g0243931 27.992 493 307 14 2 460 12 490 5.19e-44 161
Msa0577290 MtrunA17_Chr6g0452771 28.200 500 289 14 7 463 10 482 6.30e-44 160
Msa0577290 MtrunA17_Chr7g0235051 29.752 484 277 14 2 459 6 452 1.34e-43 159
Msa0577290 MtrunA17_Chr7g0243761 29.072 485 282 19 2 460 6 454 1.42e-43 159
Msa0577290 MtrunA17_Chr6g0486251 29.325 474 284 15 8 453 7 457 1.61e-43 159
Msa0577290 MtrunA17_Chr6g0486201 29.325 474 284 15 8 453 7 457 1.61e-43 159
Msa0577290 MtrunA17_Chr7g0232411 36.680 259 138 7 219 456 208 461 3.68e-43 158
Msa0577290 MtrunA17_Chr6g0454211 28.571 504 294 17 1 463 291 769 3.84e-43 162
Msa0577290 MtrunA17_Chr6g0454211 32.850 207 100 9 173 371 61 236 2.07e-18 88.6
Msa0577290 MtrunA17_Chr6g0453961 28.858 499 288 16 7 463 19 492 4.38e-43 159
Msa0577290 MtrunA17_Chr7g0243781 28.247 485 299 14 7 460 9 475 7.76e-43 158
Msa0577290 MtrunA17_Chr7g0232391 37.109 256 135 7 219 453 208 458 1.28e-42 157
Msa0577290 MtrunA17_Chr8g0335161 28.392 479 286 15 7 453 6 459 1.37e-42 157
Msa0577290 MtrunA17_Chr2g0307961 29.545 484 291 18 5 462 11 470 1.91e-42 156
Msa0577290 MtrunA17_Chr4g0060511 26.572 493 317 13 2 460 6 487 3.94e-42 156
Msa0577290 MtrunA17_Chr6g0454221 37.768 233 121 5 243 459 5 229 4.14e-42 151
Msa0577290 MtrunA17_Chr7g0243861 27.935 494 306 15 2 460 9 487 8.30e-42 155
Msa0577290 MtrunA17_Chr6g0462571 29.106 481 283 20 10 458 5 459 9.90e-42 155
Msa0577290 MtrunA17_Chr1g0179901 26.614 511 287 17 7 461 16 494 2.35e-41 154
Msa0577290 MtrunA17_Chr4g0072761 27.293 447 297 10 7 447 15 439 2.70e-41 153
Msa0577290 MtrunA17_Chr7g0265141 28.257 499 299 17 4 461 6 486 5.02e-41 153
Msa0577290 MtrunA17_Chr4g0072771 26.096 456 306 14 7 453 25 458 5.75e-41 152
Msa0577290 MtrunA17_Chr7g0232401 28.571 476 296 16 7 456 6 463 6.58e-41 152
Msa0577290 MtrunA17_Chr6g0462541 28.686 373 233 9 103 458 105 461 7.67e-41 152
Msa0577290 MtrunA17_Chr4g0014061 27.778 486 291 16 8 458 10 470 1.01e-40 152
Msa0577290 MtrunA17_Chr7g0250021 33.824 340 186 14 7 332 12 326 1.05e-40 148
Msa0577290 MtrunA17_Chr8g0339451 31.070 383 220 14 103 456 92 459 1.39e-40 151
Msa0577290 MtrunA17_Chr4g0066281 27.893 484 284 14 10 460 15 466 1.71e-40 151
Msa0577290 MtrunA17_Chr7g0232341 29.348 460 257 19 7 429 6 434 1.93e-40 151
Msa0577290 MtrunA17_Chr8g0334831 36.585 246 112 7 219 430 212 447 2.24e-40 151
Msa0577290 MtrunA17_Chr4g0011051 28.158 380 233 10 112 461 119 488 2.71e-40 151
Msa0577290 MtrunA17_Chr4g0044511 28.660 485 295 19 7 460 40 504 3.22e-40 151
Msa0577290 MtrunA17_Chr8g0336731 31.099 373 211 12 112 457 134 487 4.73e-40 150
Msa0577290 MtrunA17_Chr4g0042891 31.563 339 179 13 150 457 146 462 7.27e-40 149
Msa0577290 MtrunA17_Chr6g0462521 27.826 460 287 13 10 449 5 439 1.41e-39 148
Msa0577290 MtrunA17_Chr7g0275681 28.485 495 289 17 7 461 12 481 1.53e-39 149
Msa0577290 MtrunA17_Chr8g0339631 29.659 381 225 11 103 456 100 464 2.17e-39 148
Msa0577290 MtrunA17_Chr8g0347281 35.156 256 137 6 219 453 218 465 2.84e-39 148
Msa0577290 MtrunA17_Chr7g0232331 28.696 460 260 19 7 429 6 434 2.93e-39 147
Msa0577290 MtrunA17_Chr7g0265111 28.063 506 295 21 7 466 39 521 5.96e-39 148
Msa0577290 MtrunA17_Chr8g0336651 29.675 492 267 18 7 456 6 460 7.74e-39 150
Msa0577290 MtrunA17_Chr8g0336651 37.083 240 132 5 219 456 548 770 8.73e-37 144
Msa0577290 MtrunA17_Chr8g0336651 35.361 263 139 8 219 456 983 1239 6.98e-36 142
Msa0577290 MtrunA17_Chr8g0336691 28.986 483 284 15 7 456 919 1375 9.90e-39 150
Msa0577290 MtrunA17_Chr8g0336691 34.155 284 152 9 198 456 196 469 1.32e-34 138
Msa0577290 MtrunA17_Chr8g0336691 37.344 241 134 8 219 456 682 908 1.74e-34 137
Msa0577290 MtrunA17_Chr6g0462531 28.747 487 276 19 10 456 5 460 1.08e-38 146
Msa0577290 MtrunA17_Chr6g0454351 27.236 492 287 19 7 463 12 467 1.49e-38 145
Msa0577290 MtrunA17_Chr8g0339601 34.132 334 175 15 153 456 8 326 1.70e-38 142
Msa0577290 MtrunA17_Chr4g0066261 27.033 492 294 15 10 460 14 481 2.35e-38 145
Msa0577290 MtrunA17_Chr8g0347271 31.454 337 154 11 184 453 140 466 3.95e-38 145
Msa0577290 MtrunA17_Chr5g0440421 27.000 500 305 19 7 461 10 494 4.36e-38 145
Msa0577290 MtrunA17_Chr8g0339461 32.895 380 199 15 112 456 109 467 4.92e-38 144
Msa0577290 MtrunA17_Chr5g0442581 25.146 513 306 16 7 471 5 487 6.17e-38 145
Msa0577290 MtrunA17_Chr4g0066221 25.859 495 307 13 10 466 14 486 6.53e-38 144
Msa0577290 MtrunA17_Chr5g0448551 27.158 475 296 18 8 464 8 450 8.71e-38 143
Msa0577290 MtrunA17_Chr4g0066201 26.639 488 291 16 8 460 19 474 1.00e-37 144
Msa0577290 MtrunA17_Chr4g0066151 27.198 489 292 16 8 460 19 479 1.29e-37 143
Msa0577290 MtrunA17_Chr8g0336741 28.571 483 284 17 7 456 13 467 1.64e-37 143
Msa0577290 MtrunA17_Chr1g0153451 27.386 482 290 16 7 456 6 459 1.95e-37 142
Msa0577290 MtrunA17_Chr3g0079731 33.333 270 144 6 219 457 213 477 2.84e-37 142
Msa0577290 MtrunA17_Chr7g0265041 27.000 500 307 18 7 465 11 493 4.91e-37 142
Msa0577290 MtrunA17_Chr6g0454271 30.640 297 176 7 183 463 7 289 5.16e-37 137
Msa0577290 MtrunA17_Chr8g0373301 26.834 477 299 17 7 456 9 462 6.28e-37 141
Msa0577290 MtrunA17_Chr7g0232311 30.704 355 203 14 128 457 124 460 7.72e-37 141
Msa0577290 MtrunA17_Chr5g0442561 24.750 501 299 12 7 461 5 473 8.57e-37 141
Msa0577290 MtrunA17_Chr7g0265151 31.618 272 155 6 219 461 215 484 9.29e-37 141
Msa0577290 MtrunA17_Chr5g0442601 24.949 493 310 12 8 461 405 876 2.30e-36 143
Msa0577290 MtrunA17_Chr5g0442601 32.967 182 100 4 233 394 154 333 5.84e-24 105
Msa0577290 MtrunA17_Chr5g0431431 39.086 197 111 2 219 415 156 343 3.38e-36 137
Msa0577290 MtrunA17_Chr4g0066171 27.219 507 263 19 8 460 22 476 4.10e-36 139
Msa0577290 MtrunA17_Chr4g0042931 30.581 327 182 11 158 457 152 460 5.76e-36 139
Msa0577290 MtrunA17_Chr6g0462551 34.241 257 145 8 219 458 213 462 1.34e-35 137
Msa0577290 MtrunA17_Chr7g0243711 36.574 216 120 5 262 460 101 316 2.25e-35 134
Msa0577290 MtrunA17_Chr2g0329111 27.572 486 304 14 6 457 5 476 2.46e-35 137
Msa0577290 MtrunA17_Chr8g0374971 25.845 503 288 17 8 460 13 480 3.82e-35 136
Msa0577290 MtrunA17_Chr8g0374901 29.268 328 185 9 165 460 166 478 4.40e-35 136
Msa0577290 MtrunA17_Chr5g0429711 32.278 316 186 12 162 464 165 465 1.18e-34 135
Msa0577290 MtrunA17_Chr5g0403641 32.886 298 163 7 198 462 211 504 1.44e-34 135
Msa0577290 MtrunA17_Chr7g0243851 33.083 266 153 4 220 460 177 442 1.44e-34 134
Msa0577290 MtrunA17_Chr8g0382021 34.762 210 118 3 269 460 280 488 1.45e-34 135
Msa0577290 MtrunA17_Chr8g0366391 26.283 487 308 15 7 460 9 477 1.76e-34 135
Msa0577290 MtrunA17_Chr6g0454171 33.206 262 135 7 219 463 74 312 1.93e-34 131
Msa0577290 MtrunA17_Chr8g0334851 27.160 486 282 18 7 451 6 460 4.02e-34 134
Msa0577290 MtrunA17_Chr1g0159551 35.749 207 117 4 269 460 254 459 7.72e-34 132
Msa0577290 MtrunA17_Chr7g0275511 27.500 480 275 20 8 447 16 462 7.86e-34 133
Msa0577290 MtrunA17_Chr5g0442521 29.305 331 188 10 162 461 161 476 8.50e-34 132
Msa0577290 MtrunA17_Chr1g0173121 36.232 207 116 4 269 460 257 462 8.95e-34 132
Msa0577290 MtrunA17_Chr6g0463861 33.486 218 122 3 266 460 256 473 1.02e-33 132
Msa0577290 MtrunA17_Chr5g0448521 31.481 270 155 4 219 461 202 468 1.30e-33 132
Msa0577290 MtrunA17_Chr6g0454251 28.431 408 243 15 1 372 1 395 1.49e-33 130
Msa0577290 MtrunA17_Chr7g0243911 41.530 183 90 4 267 432 20 202 1.57e-33 126
Msa0577290 MtrunA17_Chr1g0153461 36.190 210 111 5 267 456 2 208 2.65e-33 125
Msa0577290 MtrunA17_Chr8g0374941 31.290 310 179 9 185 460 1108 1417 2.67e-33 134
Msa0577290 MtrunA17_Chr8g0374941 35.784 204 108 4 266 446 262 465 7.48e-30 124
Msa0577290 MtrunA17_Chr8g0374941 27.922 308 181 9 164 442 631 926 9.37e-27 114
Msa0577290 MtrunA17_Chr4g0066131 34.722 216 118 4 266 458 257 472 4.28e-33 130
Msa0577290 MtrunA17_Chr8g0355011 36.788 193 108 3 278 463 179 364 4.81e-33 128
Msa0577290 MtrunA17_Chr4g0044501 28.378 370 227 14 115 460 120 475 9.58e-33 130
Msa0577290 MtrunA17_Chr1g0165701 37.681 207 114 3 269 460 277 483 1.65e-32 129
Msa0577290 MtrunA17_Chr5g0442541 25.743 505 286 17 7 463 5 468 1.75e-32 129
Msa0577290 MtrunA17_Chr5g0442491 31.136 273 150 7 219 461 211 475 2.57e-32 128
Msa0577290 MtrunA17_Chr7g0243611 33.770 305 154 11 120 402 1 279 3.38e-32 124
Msa0577290 MtrunA17_Chr5g0419761 26.016 492 313 16 7 461 9 486 3.49e-32 128
Msa0577290 MtrunA17_Chr2g0302961 24.025 487 311 14 7 460 5 465 4.08e-32 127
Msa0577290 MtrunA17_Chr8g0339441 26.423 492 248 15 7 456 6 425 5.60e-32 127
Msa0577290 MtrunA17_Chr6g0482061 25.150 501 294 16 7 459 11 478 6.75e-32 127
Msa0577290 MtrunA17_Chr8g0334861 35.686 255 129 9 219 447 205 450 7.33e-32 127
Msa0577290 MtrunA17_Chr4g0044521 31.818 308 179 9 173 457 164 463 9.15e-32 127
Msa0577290 MtrunA17_Chr6g0454371 35.165 182 104 3 291 465 1 175 1.24e-31 119
Msa0577290 MtrunA17_Chr2g0278721 26.087 460 298 15 7 445 517 955 1.30e-31 129
Msa0577290 MtrunA17_Chr2g0278721 25.112 446 292 15 7 432 15 438 3.71e-22 100
Msa0577290 MtrunA17_Chr5g0442511 29.213 267 161 4 219 460 230 493 1.87e-31 126
Msa0577290 MtrunA17_Chr7g0241801 26.395 466 280 14 7 461 9 422 3.39e-31 124
Msa0577290 MtrunA17_Chr8g0355221 35.885 209 117 3 269 460 278 486 4.69e-31 125
Msa0577290 MtrunA17_Chr5g0409591 24.180 488 270 14 8 432 5 455 1.33e-30 124
Msa0577290 MtrunA17_Chr7g0241781 26.013 469 278 17 7 461 9 422 1.44e-30 123
Msa0577290 MtrunA17_Chr5g0429681 34.848 264 146 10 219 464 248 503 1.75e-30 123
Msa0577290 MtrunA17_Chr8g0361411 27.708 480 287 21 7 460 8 453 3.03e-30 122
Msa0577290 MtrunA17_Chr1g0196851 25.275 455 293 13 4 436 46 475 3.17e-30 122
Msa0577290 MtrunA17_Chr5g0410941 25.992 504 296 14 8 466 24 495 3.49e-30 122
Msa0577290 MtrunA17_Chr5g0420801 26.964 471 293 20 1 446 1 445 6.22e-30 121
Msa0577290 MtrunA17_Chr5g0401851 36.364 209 117 4 268 460 275 483 1.14e-29 121
Msa0577290 MtrunA17_Chr8g0369341 26.626 492 299 18 1 457 1 465 2.61e-29 120
Msa0577290 MtrunA17_Chr8g0350881 33.803 213 118 3 271 460 268 480 4.35e-29 119
Msa0577290 MtrunA17_Chr8g0370941 25.494 506 274 19 7 447 8 475 5.41e-29 119
Msa0577290 MtrunA17_Chr6g0463851 32.558 215 118 4 271 460 270 482 1.53e-28 118
Msa0577290 MtrunA17_Chr2g0302991 28.788 264 159 8 219 460 206 462 4.51e-28 116
Msa0577290 MtrunA17_Chr7g0243811 30.976 297 182 7 115 401 99 382 4.70e-28 115
Msa0577290 MtrunA17_Chr8g0374931 33.180 217 123 4 266 460 265 481 6.50e-28 116
Msa0577290 MtrunA17_Chr5g0428081 25.051 491 303 12 10 460 14 479 8.26e-28 115
Msa0577290 MtrunA17_Chr7g0218311 32.743 226 130 3 263 466 264 489 9.05e-28 115
Msa0577290 MtrunA17_Chr4g0029131 25.942 451 286 17 7 436 12 435 9.31e-28 116
Msa0577290 MtrunA17_Chr2g0294931 25.203 492 307 13 8 460 12 481 1.81e-27 115
Msa0577290 MtrunA17_Chr5g0416821 23.848 499 294 14 8 460 15 473 2.48e-27 114
Msa0577290 MtrunA17_Chr5g0416741 32.864 213 128 3 263 460 271 483 3.82e-27 114
Msa0577290 MtrunA17_Chr4g0029151 25.490 459 278 18 7 436 20 443 6.76e-27 112
Msa0577290 MtrunA17_Chr2g0294941 34.673 199 108 4 266 442 163 361 1.49e-26 110
Msa0577290 MtrunA17_Chr4g0044481 41.135 141 76 2 266 399 262 402 3.34e-26 110
Msa0577290 MtrunA17_Chr6g0463891 32.589 224 130 3 253 460 266 484 3.52e-26 111
Msa0577290 MtrunA17_Chr8g0367221 25.641 468 279 16 7 438 798 1232 1.15e-25 111
Msa0577290 MtrunA17_Chr8g0367221 25.376 465 283 16 7 438 12 445 4.67e-24 106
Msa0577290 MtrunA17_Chr8g0367221 23.881 469 286 16 7 438 1288 1722 1.45e-21 98.6
Msa0577290 MtrunA17_Chr2g0283041 22.718 471 327 13 7 461 7 456 1.83e-25 108
Msa0577290 MtrunA17_Chr2g0319761 26.096 479 299 16 7 468 8 448 2.99e-25 108
Msa0577290 MtrunA17_Chr7g0232351 38.857 175 81 7 219 371 208 378 4.48e-25 106
Msa0577290 MtrunA17_Chr3g0079711 35.359 181 93 5 295 453 3 181 7.76e-25 101
Msa0577290 MtrunA17_Chr8g0336261 40.164 122 66 1 291 405 1 122 1.09e-24 99.4
Msa0577290 MtrunA17_Chr2g0294921 24.131 489 316 13 8 460 161 630 2.13e-24 106
Msa0577290 MtrunA17_Chr2g0302851 24.664 446 289 15 7 432 16 434 3.21e-24 105
Msa0577290 MtrunA17_Chr8g0337381 44.000 125 63 3 333 456 3 121 4.50e-24 97.4
Msa0577290 MtrunA17_Chr2g0319731 25.435 460 284 17 7 438 25 453 9.93e-24 103
Msa0577290 MtrunA17_Chr6g0454231 29.572 257 131 9 214 461 4 219 3.29e-23 102
Msa0577290 MtrunA17_Chr4g0069611 24.605 443 293 15 7 432 15 433 4.59e-23 101
Msa0577290 MtrunA17_Chr8g0336321 24.622 463 306 12 1 439 1 444 4.04e-22 99.0
Msa0577290 MtrunA17_Chr8g0336251 24.622 463 306 12 1 439 1 444 4.60e-22 98.6
Msa0577290 MtrunA17_Chr2g0278741 25.166 453 283 19 7 432 97 520 6.10e-22 99.0
Msa0577290 MtrunA17_Chr6g0466831 23.841 453 284 14 7 432 18 436 9.46e-22 97.8
Msa0577290 MtrunA17_Chr4g0066141 35.669 157 89 3 312 460 199 351 1.07e-21 96.3
Msa0577290 MtrunA17_Chr2g0319801 24.615 455 294 14 7 438 8 436 1.73e-21 97.1
Msa0577290 MtrunA17_Chr2g0319791 23.431 478 315 13 7 469 8 449 2.95e-21 96.3
Msa0577290 MtrunA17_Chr8g0357361 36.364 154 87 4 255 399 103 254 6.64e-21 92.4
Msa0577290 MtrunA17_Chr6g0466841 22.889 450 292 14 7 432 18 436 1.02e-20 94.7
Msa0577290 MtrunA17_Chr4g0040711 24.242 495 299 17 7 471 8 456 1.10e-20 94.4
Msa0577290 MtrunA17_Chr5g0427571 35.065 231 124 9 218 429 45 268 1.40e-20 92.0
Msa0577290 MtrunA17_Chr7g0231631 31.455 213 117 4 263 460 61 259 1.55e-20 91.3
Msa0577290 MtrunA17_Chr4g0039881 25.508 443 269 17 17 432 2 410 1.30e-19 91.3
Msa0577290 MtrunA17_Chr2g0319751 25.352 497 282 18 7 469 485 926 1.40e-19 92.0
Msa0577290 MtrunA17_Chr2g0319751 22.316 475 296 15 7 458 8 432 4.80e-15 78.2
Msa0577290 MtrunA17_Chr4g0040691 30.332 211 122 6 271 471 261 456 1.10e-18 88.6
Msa0577290 MtrunA17_Chr6g0464091 23.566 488 299 22 7 461 18 464 2.63e-18 87.4
Msa0577290 MtrunA17_Chr3g0092031 33.929 168 102 6 271 432 6 170 4.56e-18 82.4
Msa0577290 MtrunA17_Chr4g0029161 23.864 440 281 17 7 436 12 407 1.48e-15 78.6
Msa0577290 MtrunA17_Chr7g0243731 47.222 72 37 1 329 399 5 76 1.31e-13 66.2
Msa0577290 MtrunA17_Chr1g0207911 28.834 163 106 2 8 164 9 167 1.35e-13 70.9
Msa0577290 MtrunA17_Chr6g0454391 44.828 58 32 0 348 405 13 70 1.78e-12 64.3
Msa0577290 MtrunA17_Chr6g0453981 33.553 152 84 6 173 315 61 204 2.57e-12 66.6
Msa0577290 MtrunA17_Chr2g0321331 31.383 188 95 8 267 438 76 245 5.40e-12 66.2
Msa0577290 MtrunA17_Chr8g0377901 53.030 66 24 3 203 267 4 63 2.40e-11 59.7
Msa0577290 MtrunA17_Chr5g0442501 22.393 326 211 12 7 316 5 304 5.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577290 AT4G15550.1 45.895 475 220 12 7 459 13 472 2.12e-139 409
Msa0577290 AT1G05560.1 46.901 484 206 13 7 466 5 461 1.09e-135 399
Msa0577290 AT1G05560.2 46.901 484 206 13 7 466 55 511 2.13e-135 400
Msa0577290 AT4G14090.1 46.055 469 220 13 2 459 8 454 1.93e-129 383
Msa0577290 AT1G05530.1 45.168 476 215 12 7 461 5 455 6.98e-127 376
Msa0577290 AT2G43820.1 38.797 482 237 18 1 460 1 446 1.29e-93 291
Msa0577290 AT4G15500.1 36.653 472 265 13 7 461 9 463 2.88e-91 286
Msa0577290 AT1G05675.1 37.131 474 245 12 7 457 6 449 2.02e-90 283
Msa0577290 AT4G15480.1 35.924 476 267 12 7 460 19 478 2.71e-90 283
Msa0577290 AT2G31790.1 37.124 466 258 12 7 457 8 453 4.04e-90 282
Msa0577290 AT1G24100.1 36.461 469 262 12 7 460 11 458 4.32e-89 280
Msa0577290 AT1G05680.1 36.709 474 247 12 7 457 6 449 2.06e-88 278
Msa0577290 AT4G15490.1 34.728 478 281 12 5 464 6 470 3.23e-87 275
Msa0577290 AT2G43840.1 36.646 483 252 17 1 463 1 449 1.04e-86 273
Msa0577290 AT2G43840.2 36.439 483 253 17 1 463 1 449 2.89e-86 272
Msa0577290 AT3G21560.1 35.095 473 276 12 7 460 12 472 4.81e-86 273
Msa0577290 AT2G31750.1 37.209 473 254 17 7 461 8 455 1.28e-83 265
Msa0577290 AT2G31750.2 37.209 473 254 17 7 461 8 455 5.18e-83 265
Msa0577290 AT2G23260.1 34.304 481 262 19 4 462 7 455 7.61e-78 250
Msa0577290 AT2G23250.1 34.632 462 264 15 10 460 1 435 1.16e-77 249
Msa0577290 AT2G36970.1 30.526 475 295 12 7 460 10 470 1.00e-62 212
Msa0577290 AT2G30140.1 31.524 479 271 15 3 460 9 451 3.01e-60 204
Msa0577290 AT2G28080.1 31.799 478 272 18 11 461 22 472 3.35e-60 205
Msa0577290 AT2G30140.2 31.799 478 270 15 3 460 9 450 6.13e-60 203
Msa0577290 AT1G22360.1 29.555 494 292 14 4 462 7 479 1.01e-58 201
Msa0577290 AT1G22360.2 29.124 491 286 14 4 462 7 467 8.86e-57 195
Msa0577290 AT2G30150.2 30.561 481 268 16 6 460 12 452 8.64e-56 192
Msa0577290 AT1G22400.1 28.402 507 288 16 7 468 13 489 1.65e-55 192
Msa0577290 AT2G30150.1 30.802 474 262 16 13 460 3 436 1.61e-54 189
Msa0577290 AT1G22380.1 29.098 488 296 14 7 462 13 482 1.73e-54 190
Msa0577290 AT1G78270.1 30.042 476 276 18 2 442 8 461 2.04e-52 184
Msa0577290 AT1G22340.1 29.200 500 285 19 7 464 13 485 3.53e-52 184
Msa0577290 AT5G38040.1 29.336 467 274 13 15 460 18 449 3.60e-51 180
Msa0577290 AT3G46670.1 29.792 480 267 14 6 457 8 445 3.96e-51 180
Msa0577290 AT3G46660.1 30.833 480 266 17 5 457 12 452 9.35e-51 179
Msa0577290 AT5G59580.1 28.661 478 288 14 6 464 8 451 5.82e-49 174
Msa0577290 AT1G22370.2 29.209 493 294 15 2 462 8 477 1.59e-48 174
Msa0577290 AT5G38010.1 29.792 480 281 13 3 461 6 450 1.08e-46 168
Msa0577290 AT5G59590.1 28.361 476 283 15 7 460 10 449 2.14e-46 167
Msa0577290 AT3G02100.1 27.195 467 303 12 7 458 13 457 6.06e-45 163
Msa0577290 AT2G36780.1 27.935 494 312 17 2 461 6 489 4.02e-44 162
Msa0577290 AT2G36770.1 28.629 496 306 18 2 461 6 489 5.34e-44 162
Msa0577290 AT3G46650.1 28.298 470 268 16 6 456 9 428 1.25e-43 159
Msa0577290 AT2G36800.1 28.310 491 302 17 7 461 12 488 6.73e-43 159
Msa0577290 AT2G36760.1 27.366 486 312 15 7 461 14 489 1.11e-42 158
Msa0577290 AT2G15490.3 29.388 490 303 16 1 460 1 477 8.61e-42 155
Msa0577290 AT3G16520.3 31.522 368 202 13 127 459 106 458 2.11e-41 154
Msa0577290 AT2G15490.1 28.803 493 305 16 1 460 1 480 2.53e-41 154
Msa0577290 AT3G46680.1 26.971 482 287 12 3 458 5 447 3.09e-41 153
Msa0577290 AT2G15480.1 29.278 485 298 16 7 460 10 480 4.10e-41 153
Msa0577290 AT4G34131.1 28.689 488 302 18 3 459 6 478 1.58e-40 152
Msa0577290 AT3G46700.1 26.477 491 281 15 4 463 6 447 2.02e-40 151
Msa0577290 AT3G46690.1 28.878 419 240 12 4 396 6 392 2.24e-40 150
Msa0577290 AT3G16520.2 31.921 354 191 13 127 445 106 444 2.61e-40 150
Msa0577290 AT3G16520.1 31.921 354 191 13 127 445 106 444 2.93e-40 150
Msa0577290 AT2G29710.1 27.010 485 298 14 7 461 5 463 3.13e-40 150
Msa0577290 AT3G55700.1 28.421 475 291 15 6 461 7 451 3.62e-40 150
Msa0577290 AT5G05870.1 35.686 255 140 6 219 460 211 454 8.23e-40 149
Msa0577290 AT2G15480.2 28.543 494 300 16 7 460 10 490 1.58e-39 149
Msa0577290 AT2G36790.1 26.380 489 313 16 7 461 13 488 1.90e-39 149
Msa0577290 AT3G46720.1 27.549 461 292 11 7 457 9 437 1.95e-39 148
Msa0577290 AT1G22370.1 34.084 311 154 10 180 462 20 307 3.41e-39 144
Msa0577290 AT2G36750.1 27.926 487 307 16 7 461 10 484 7.13e-39 147
Msa0577290 AT5G17050.1 24.786 468 317 12 7 461 12 457 8.34e-39 147
Msa0577290 AT3G53160.1 26.389 504 304 16 2 461 3 483 2.08e-38 146
Msa0577290 AT2G29730.1 25.684 475 317 12 7 461 5 463 6.30e-38 144
Msa0577290 AT2G29740.1 27.530 494 299 18 3 460 4 474 1.10e-37 144
Msa0577290 AT4G34138.1 27.992 493 295 16 7 462 11 480 1.51e-37 144
Msa0577290 AT5G05880.1 26.316 475 295 11 7 460 8 448 3.78e-37 142
Msa0577290 AT3G11340.1 27.872 470 289 16 8 461 10 445 4.21e-37 142
Msa0577290 AT1G01420.2 36.015 261 134 8 219 455 213 464 5.26e-37 142
Msa0577290 AT1G01420.1 36.015 261 134 8 219 455 210 461 5.51e-37 142
Msa0577290 AT1G73880.1 26.994 489 288 17 7 461 14 467 1.17e-36 141
Msa0577290 AT5G14860.1 27.579 504 288 20 6 466 7 476 1.25e-36 141
Msa0577290 AT5G05860.1 27.505 469 299 13 7 462 9 449 2.41e-36 139
Msa0577290 AT5G05900.1 27.917 480 280 15 7 460 8 447 2.43e-36 139
Msa0577290 AT1G10400.1 26.501 483 309 17 1 459 1 461 2.49e-36 140
Msa0577290 AT4G34135.1 27.570 428 261 15 2 396 3 414 3.38e-36 140
Msa0577290 AT2G16890.2 29.151 518 275 24 1 472 3 474 4.20e-36 139
Msa0577290 AT4G36770.1 35.496 262 125 7 212 442 197 445 4.81e-36 139
Msa0577290 AT4G01070.1 35.019 257 139 7 219 453 210 460 5.11e-36 139
Msa0577290 AT5G26310.1 26.739 460 288 8 7 439 7 444 7.18e-36 139
Msa0577290 AT4G15280.1 25.000 492 311 13 7 461 4 474 8.57e-36 139
Msa0577290 AT1G30530.1 25.745 470 305 15 6 461 12 451 1.26e-35 137
Msa0577290 AT4G15280.2 25.000 492 311 13 7 461 36 506 1.45e-35 138
Msa0577290 AT3G50740.1 33.213 277 155 7 219 467 209 483 2.26e-35 137
Msa0577290 AT1G01390.1 28.482 481 269 16 7 446 8 454 4.63e-35 136
Msa0577290 AT1G01390.2 28.482 481 269 16 7 446 25 471 5.26e-35 137
Msa0577290 AT5G66690.1 28.043 460 282 12 7 439 7 444 6.18e-35 136
Msa0577290 AT1G07250.1 26.800 500 289 18 7 461 6 473 9.29e-35 135
Msa0577290 AT2G29750.1 28.081 495 296 19 3 461 4 474 9.63e-35 135
Msa0577290 AT3G22250.1 26.809 470 276 14 8 442 9 445 1.18e-34 135
Msa0577290 AT3G55710.1 34.902 255 147 5 219 461 208 455 1.71e-34 135
Msa0577290 AT1G07260.1 27.126 494 294 19 7 461 6 472 3.12e-34 134
Msa0577290 AT3G21800.1 31.086 267 155 5 219 460 213 475 3.19e-34 134
Msa0577290 AT3G21750.1 28.962 366 213 10 128 461 119 469 6.39e-34 133
Msa0577290 AT5G17040.1 23.758 463 322 11 5 461 3 440 8.58e-34 132
Msa0577290 AT3G21790.1 24.899 494 312 14 7 460 4 478 2.90e-33 132
Msa0577290 AT5G17030.1 24.078 461 328 10 7 461 12 456 8.66e-33 130
Msa0577290 AT1G07240.1 32.184 261 154 7 219 461 221 476 1.09e-32 130
Msa0577290 AT4G15260.1 27.273 363 219 10 128 461 9 355 1.62e-32 127
Msa0577290 AT5G17040.2 30.488 246 161 4 219 461 100 338 8.99e-32 125
Msa0577290 AT5G05890.1 26.639 488 281 13 7 460 8 452 1.05e-31 127
Msa0577290 AT5G37950.2 30.292 274 171 5 108 373 78 339 3.34e-31 123
Msa0577290 AT2G18570.1 31.034 261 161 4 211 453 200 459 5.63e-31 125
Msa0577290 AT3G21780.1 32.210 267 150 6 219 460 208 468 9.73e-31 124
Msa0577290 AT3G53150.1 25.197 508 308 18 7 461 22 510 2.69e-30 123
Msa0577290 AT3G21760.1 24.603 504 303 16 7 460 4 480 2.97e-30 123
Msa0577290 AT2G18560.1 31.298 262 159 6 211 453 110 369 7.77e-30 120
Msa0577290 AT2G16890.3 28.947 456 243 20 1 415 3 418 1.10e-29 120
Msa0577290 AT5G03490.1 26.850 473 296 20 7 459 19 461 2.43e-29 120
Msa0577290 AT5G37950.1 30.000 280 170 7 108 373 78 345 4.83e-29 117
Msa0577290 AT1G06000.1 24.797 492 268 15 7 462 10 435 8.30e-29 118
Msa0577290 AT5G12890.1 32.955 264 155 6 220 465 227 486 1.55e-28 118
Msa0577290 AT1G51210.1 26.244 442 278 14 7 432 20 429 1.55e-28 117
Msa0577290 AT2G26480.1 27.907 258 163 4 219 463 201 448 2.10e-28 117
Msa0577290 AT5G53990.1 24.477 478 304 15 7 463 6 447 7.36e-28 115
Msa0577290 AT5G54010.1 24.738 477 310 15 7 463 6 453 4.52e-27 113
Msa0577290 AT5G65550.1 25.167 449 290 16 7 432 9 434 6.69e-27 113
Msa0577290 AT4G27570.1 23.965 459 292 12 7 443 7 430 4.04e-26 110
Msa0577290 AT4G27560.1 24.295 461 286 11 1 436 1 423 4.70e-26 110
Msa0577290 AT3G29630.1 26.009 446 283 15 7 436 6 420 1.26e-24 106
Msa0577290 AT5G54060.1 25.413 484 295 17 2 451 6 457 4.73e-24 105
Msa0577290 AT2G23210.1 30.877 285 161 13 7 280 10 269 5.14e-24 102
Msa0577290 AT5G49690.1 25.105 474 301 16 7 461 10 448 9.93e-24 103
Msa0577290 AT1G64910.1 24.689 482 301 18 7 469 6 444 1.46e-23 103
Msa0577290 AT1G50580.1 24.301 465 295 15 7 451 6 433 6.37e-23 101
Msa0577290 AT1G64920.1 22.545 448 297 12 7 436 6 421 2.49e-21 96.7
Msa0577290 AT2G22930.1 22.422 446 296 14 7 436 6 417 5.81e-21 95.5
Msa0577290 AT2G22590.1 24.086 465 289 19 7 438 15 448 7.40e-21 95.5
Msa0577290 AT3G29630.2 24.550 444 266 13 7 436 6 394 1.45e-20 94.4
Msa0577290 AT4G09500.2 22.247 454 301 14 7 443 6 424 1.24e-18 88.6
Msa0577290 AT4G34135.2 25.294 340 214 12 2 316 3 327 3.01e-15 77.4
Msa0577290 AT4G09500.1 21.145 454 281 14 7 443 6 399 2.54e-13 72.0

Find 147 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCTTTCACATTCTTCTT+TGG 0.160797 4_1:+81551975 Msa0577290:CDS
TGAAAATCTTGTTGAAAATA+TGG 0.193622 4_1:-81551556 None:intergenic
ACATAAACAACAGAAGATTT+TGG 0.246598 4_1:-81551778 None:intergenic
GGGTTTATGTGGCCTTGAGC+TGG 0.250910 4_1:-81550992 None:intergenic
GTTCTTTCACATTCTTCTTT+GGG 0.258852 4_1:+81551976 Msa0577290:CDS
ATTCAATGGTAGTTTGGTTT+TGG 0.261860 4_1:-81551447 None:intergenic
CTGGTAATTCAATGGTAGTT+TGG 0.310098 4_1:-81551453 None:intergenic
ATTCTCTATTACTACTTTCA+TGG 0.315279 4_1:+81551397 Msa0577290:CDS
ATTGAAGATGTGTGGAAGAT+AGG 0.321918 4_1:+81552108 Msa0577290:CDS
TCTGTTGTTTATGTTTCTTT+TGG 0.336383 4_1:+81551787 Msa0577290:CDS
CGTAAACACCTTTGAAGCTT+TGG 0.337494 4_1:+81551612 Msa0577290:CDS
TCTACACGTTAATGCTTCCT+TGG 0.338389 4_1:+81551302 Msa0577290:CDS
TGGATGGATTGAGGAGGATT+AGG 0.363651 4_1:-81551093 None:intergenic
AAGGTGTTTACGAGTATTAT+CGG 0.367438 4_1:-81551601 None:intergenic
CTCTAGTGGCATTTCCTCAA+TGG 0.368993 4_1:+81552058 Msa0577290:CDS
GTGGATGAGGATGGAATTGT+AGG 0.375063 4_1:+81552150 Msa0577290:CDS
GAACTCGACTTTGGAAAGTT+TGG 0.378098 4_1:+81552023 Msa0577290:CDS
GAAAGGTTTGGATTCTTGTT+TGG 0.378817 4_1:-81551269 None:intergenic
GGATGAAATTAGAAAGTGTT+TGG 0.378934 4_1:+81552176 Msa0577290:CDS
CGCTTGGCAAATTGAAGGGC+TGG 0.382574 4_1:-81551013 None:intergenic
TGAGAAAGAATGCAATGAAA+TGG 0.388985 4_1:+81552235 Msa0577290:CDS
CCACCACCACCACATCCTTC+TGG 0.390460 4_1:+81550961 Msa0577290:CDS
GAAGGATGTGGTGGTGGTGG+TGG 0.396112 4_1:-81550958 None:intergenic
CGGTAGAGGTGGAGGGTGAT+AGG 0.403832 4_1:-81551067 None:intergenic
GTGATGGGGAGAGGAGAGAA+AGG 0.406369 4_1:+81552204 Msa0577290:CDS
TAAAGATGAGTTGGAAAAGA+AGG 0.407665 4_1:+81551921 Msa0577290:CDS
AAGGGGTTGGCTAGAGAGGC+AGG 0.409507 4_1:+81552258 Msa0577290:CDS
GTCCCGCAGAAAAGAATCTA+AGG 0.412896 4_1:+81552292 Msa0577290:CDS
GAGGTTGGAGATGGTGGTTA+TGG 0.413944 4_1:-81551113 None:intergenic
ACTTTGGAAAGTTTGGTATC+GGG 0.421824 4_1:+81552030 Msa0577290:CDS
AGTCATTTGAAGGTTGCAAT+AGG 0.422571 4_1:-81551732 None:intergenic
CATTCAATATAGTCATTTGA+AGG 0.424031 4_1:-81551742 None:intergenic
GTTGAAATTTAAAGATGAGT+TGG 0.425358 4_1:+81551912 Msa0577290:CDS
TTGCAATAGGTCACCGCTAA+AGG 0.428659 4_1:-81551719 None:intergenic
GACTTTGGAAAGTTTGGTAT+CGG 0.429838 4_1:+81552029 Msa0577290:CDS
TTGAAGATGTGTGGAAGATA+GGG 0.430114 4_1:+81552109 Msa0577290:CDS
TTTGGCAGAGAGTATAAGAT+TGG 0.437133 4_1:-81551251 None:intergenic
CCAGAAGGATGTGGTGGTGG+TGG 0.440317 4_1:-81550961 None:intergenic
TTGTGGTTGGAACTCGACTT+TGG 0.444492 4_1:+81552014 Msa0577290:CDS
GTCGTCATGGCCATCGGAGA+AGG 0.445692 4_1:-81551146 None:intergenic
TATGGAGAGGTTGGAGATGG+TGG 0.448776 4_1:-81551119 None:intergenic
CAAGTGCGTTGTTGAATTGT+GGG 0.449033 4_1:+81551851 Msa0577290:CDS
CTACACGTTAATGCTTCCTT+GGG 0.449608 4_1:+81551303 Msa0577290:CDS
GGTTTATGTGGCCTTGAGCT+GGG 0.453046 4_1:-81550991 None:intergenic
TTAGGCGACGGTAGAGGTGG+AGG 0.465565 4_1:-81551075 None:intergenic
CTCTGGCTCCAAAGCTTCAA+AGG 0.465787 4_1:-81551620 None:intergenic
TGCCAAGCGACTCATATCAA+TGG 0.465795 4_1:+81551027 Msa0577290:CDS
AAAGATGAGTTGGAAAAGAA+GGG 0.469951 4_1:+81551922 Msa0577290:CDS
AGACAAGTCACCAGGATTTG+AGG 0.475080 4_1:-81551524 None:intergenic
ATTGAAGGGCTGGGTTTATG+TGG 0.477702 4_1:-81551003 None:intergenic
GAGTAAGCAAGTGAAAGGTT+TGG 0.478164 4_1:-81551281 None:intergenic
CTTCAAATGACTATATTGAA+TGG 0.480500 4_1:+81551743 Msa0577290:CDS
TTGGAGATGGTGGTTATGGA+TGG 0.481152 4_1:-81551109 None:intergenic
TCGTCATGGCCATCGGAGAA+GGG 0.490579 4_1:-81551145 None:intergenic
GCTAGAGAGGCAGGGAAGGA+AGG 0.496328 4_1:+81552267 Msa0577290:CDS
TCCGGTAGTACTTCCTTTAG+CGG 0.499324 4_1:+81551706 Msa0577290:CDS
AAAGTGTTTGGAAGTGGTGA+TGG 0.499781 4_1:+81552188 Msa0577290:CDS
TTGGAAGTGGTGATGGGGAG+AGG 0.502226 4_1:+81552195 Msa0577290:CDS
GATAGTGTGAAGGGCAATCC+TGG 0.502974 4_1:-81551472 None:intergenic
TCAACGGCTCTAAGTGCCTC+TGG 0.506658 4_1:-81551637 None:intergenic
GCCAAGCGACTCATATCAAT+GGG 0.506703 4_1:+81551028 Msa0577290:CDS
GTTGGCTAGAGAGGCAGGGA+AGG 0.508792 4_1:+81552263 Msa0577290:CDS
TGAGTCGCTTGGCAAATTGA+AGG 0.509396 4_1:-81551018 None:intergenic
GCAAGTGCGTTGTTGAATTG+TGG 0.515077 4_1:+81551850 Msa0577290:CDS
GCTTGGCAAATTGAAGGGCT+GGG 0.519390 4_1:-81551012 None:intergenic
GGTGAGAGTTGATGATAAAG+TGG 0.520496 4_1:+81552131 Msa0577290:CDS
CAAACTACCATTGAATTACC+AGG 0.521103 4_1:+81551454 Msa0577290:CDS
AAGGATGTGGTGGTGGTGGT+GGG 0.521392 4_1:-81550957 None:intergenic
TGTTGAACTGTGAAGTGTAT+AGG 0.522665 4_1:-81551207 None:intergenic
GGTGATGAAGTCGGAGCCAC+GGG 0.524438 4_1:-81551230 None:intergenic
CTTTGGAAAGTTTGGTATCG+GGG 0.525436 4_1:+81552031 Msa0577290:CDS
GTACTACCGGAGGGAATCAA+TGG 0.525946 4_1:-81551694 None:intergenic
ATGGAAGGGGTTGGCTAGAG+AGG 0.536943 4_1:+81552254 Msa0577290:CDS
GGATTAGGCGACGGTAGAGG+TGG 0.538007 4_1:-81551078 None:intergenic
AGAATATCAAACACTGTGGC+GGG 0.545004 4_1:-81551379 None:intergenic
ATCGGACCATTGATTCCCTC+CGG 0.545735 4_1:+81551688 Msa0577290:CDS
AAGTGTTTGGAAGTGGTGAT+GGG 0.545845 4_1:+81552189 Msa0577290:CDS
GTTTACGAGTATTATCGGAT+TGG 0.548691 4_1:-81551596 None:intergenic
GGTTATGGAGAGGTTGGAGA+TGG 0.552642 4_1:-81551122 None:intergenic
GGGCAATCCTGGTAATTCAA+TGG 0.555277 4_1:-81551461 None:intergenic
CTTTGAAGCTTTGGAGCCAG+AGG 0.557170 4_1:+81551621 Msa0577290:CDS
AGTTGATGATAAAGTGGATG+AGG 0.557996 4_1:+81552137 Msa0577290:CDS
CGTCATGGCCATCGGAGAAG+GGG 0.558285 4_1:-81551144 None:intergenic
ACCGCTAAAGGAAGTACTAC+CGG 0.558600 4_1:-81551707 None:intergenic
GGAGAATGCATGCATGGATA+CGG 0.559681 4_1:+81552338 Msa0577290:CDS
TGGTGATGAAGTCGGAGCCA+CGG 0.561307 4_1:-81551231 None:intergenic
ACCTCCGCTCAGCTAAACTC+TGG 0.561490 4_1:+81551350 Msa0577290:CDS
ACCCATTGATATGAGTCGCT+TGG 0.561897 4_1:-81551029 None:intergenic
ATGAGGATGGAATTGTAGGA+GGG 0.563817 4_1:+81552154 Msa0577290:CDS
TGGTGGTTATGGATGGATTG+AGG 0.564410 4_1:-81551102 None:intergenic
CGAGCTACTTGTGGAGCCCA+AGG 0.565805 4_1:-81551319 None:intergenic
GTCACGTGGCGATAGTGTGA+AGG 0.567114 4_1:-81551482 None:intergenic
AAAGAATGCAATGAAATGGA+AGG 0.567197 4_1:+81552239 Msa0577290:CDS
GGAGGATTAGGCGACGGTAG+AGG 0.575095 4_1:-81551081 None:intergenic
AATTAGAAAGTGTTTGGAAG+TGG 0.577533 4_1:+81552182 Msa0577290:CDS
TTGAATCCACGAGCTACTTG+TGG 0.578084 4_1:-81551328 None:intergenic
TGCAATGAAATGGAAGGGGT+TGG 0.578497 4_1:+81552245 Msa0577290:CDS
AAGAATGCAATGAAATGGAA+GGG 0.580916 4_1:+81552240 Msa0577290:CDS
GGAGGGAATCAATGGTCCGA+TGG 0.581754 4_1:-81551686 None:intergenic
ATCAGCGTCGGTCTTTGTGA+TGG 0.582570 4_1:-81551179 None:intergenic
AAGATGAGTTGGAAAAGAAG+GGG 0.583738 4_1:+81551923 Msa0577290:CDS
GAAACCGTCGTCATGGCCAT+CGG 0.585905 4_1:-81551152 None:intergenic
AGAGAGGCAGGGAAGGAAGG+TGG 0.586569 4_1:+81552270 Msa0577290:CDS
GATGAGGATGGAATTGTAGG+AGG 0.587770 4_1:+81552153 Msa0577290:CDS
CTGGTAACGTACCCAGCTCA+AGG 0.588788 4_1:+81550980 Msa0577290:CDS
GTGTAGAGTAAGCAAGTGAA+AGG 0.589149 4_1:-81551286 None:intergenic
GAGAATATCAAACACTGTGG+CGG 0.589449 4_1:-81551380 None:intergenic
TTCTCCGATGGCCATGACGA+CGG 0.590441 4_1:+81551148 Msa0577290:CDS
TGAAGATGTGTGGAAGATAG+GGG 0.590800 4_1:+81552110 Msa0577290:CDS
GAGGTTATGATGAGTATCAA+CGG 0.591472 4_1:-81551653 None:intergenic
AGTGAAGTGGTGTTCTCAAG+TGG 0.591682 4_1:+81551951 Msa0577290:CDS
TATAAGATTGGTGATGAAGT+CGG 0.591974 4_1:-81551239 None:intergenic
GAGGGAATCAATGGTCCGAT+GGG 0.595436 4_1:-81551685 None:intergenic
ATTATTGGAGAATGCATGCA+TGG 0.597677 4_1:+81552332 Msa0577290:CDS
GAGTCGCTTGGCAAATTGAA+GGG 0.597812 4_1:-81551017 None:intergenic
AGAAGGGGAAGATAGTGAAG+TGG 0.600131 4_1:+81551938 Msa0577290:CDS
TGGGCTCCACAAGTAGCTCG+TGG 0.600705 4_1:+81551322 Msa0577290:CDS
TGGCGATGAAACCGTCGTCA+TGG 0.601182 4_1:-81551159 None:intergenic
AAAACAAAAGACAAGTCACC+AGG 0.608502 4_1:-81551532 None:intergenic
AGAATGCAATGAAATGGAAG+GGG 0.608881 4_1:+81552241 Msa0577290:CDS
CAAAACTAATTGAAGATGTG+TGG 0.610455 4_1:+81552100 Msa0577290:CDS
AGGGGTTGGCTAGAGAGGCA+GGG 0.613392 4_1:+81552259 Msa0577290:CDS
GGGGAGAGGAGAGAAAGGAG+AGG 0.615489 4_1:+81552209 Msa0577290:CDS
GATGATAAAGTGGATGAGGA+TGG 0.616208 4_1:+81552141 Msa0577290:CDS
TCACGTGGCGATAGTGTGAA+GGG 0.616536 4_1:-81551481 None:intergenic
TGAGGATGGAATTGTAGGAG+GGG 0.617822 4_1:+81552155 Msa0577290:CDS
TCCAGAGTTTAGCTGAGCGG+AGG 0.617889 4_1:-81551351 None:intergenic
TAGGCGACGGTAGAGGTGGA+GGG 0.621593 4_1:-81551074 None:intergenic
TTTGGAAAGTTTGGTATCGG+GGG 0.621662 4_1:+81552032 Msa0577290:CDS
AACCTCAAAATGATTCCCAT+CGG 0.625304 4_1:+81551670 Msa0577290:CDS
TTACCAGAAGGATGTGGTGG+TGG 0.635353 4_1:-81550964 None:intergenic
TGAACTGTGAAGTGTATAGG+TGG 0.639900 4_1:-81551204 None:intergenic
AGTGTTTGGAAGTGGTGATG+GGG 0.640210 4_1:+81552190 Msa0577290:CDS
GAGCTGGGTACGTTACCAGA+AGG 0.640393 4_1:-81550976 None:intergenic
GGTACGTTACCAGAAGGATG+TGG 0.640781 4_1:-81550970 None:intergenic
GATTGAGGAGGATTAGGCGA+CGG 0.647039 4_1:-81551087 None:intergenic
GAAGTGGTGTTCTCAAGTGG+AGG 0.648671 4_1:+81551954 Msa0577290:CDS
GTCATGGCCATCGGAGAAGG+GGG 0.653155 4_1:-81551143 None:intergenic
CATTGAGGAAATGCCACTAG+AGG 0.659387 4_1:-81552057 None:intergenic
TGGTTATGGATGGATTGAGG+AGG 0.667299 4_1:-81551099 None:intergenic
ACTTCACAGTTCAACACCCG+TGG 0.674976 4_1:+81551214 Msa0577290:CDS
GTATAGGTGGAAATCAGCGT+CGG 0.675940 4_1:-81551191 None:intergenic
CAATCCAGAGTTTAGCTGAG+CGG 0.681614 4_1:-81551354 None:intergenic
ACGTTACCAGAAGGATGTGG+TGG 0.681851 4_1:-81550967 None:intergenic
CTAAAGGAAGTACTACCGGA+GGG 0.685931 4_1:-81551703 None:intergenic
GCTAAAGGAAGTACTACCGG+AGG 0.721504 4_1:-81551704 None:intergenic
ATAGAGAATATCAAACACTG+TGG 0.766397 4_1:-81551383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGGATGATATATTAT+TGG + chr4_1:81552317-81552336 Msa0577290:CDS 15.0%
!!! ATTTTTGGATGATATATTAT+TGG + chr4_1:81552317-81552336 Msa0577290:CDS 15.0%
!!! TTTGAGGTAAATAAAAAAGA+AGG - chr4_1:81551511-81551530 None:intergenic 20.0%
!! TGAAAATCTTGTTGAAAATA+TGG - chr4_1:81551559-81551578 None:intergenic 20.0%
!!! AAAGAATCTAAGGAAATTTT+TGG + chr4_1:81552302-81552321 Msa0577290:CDS 20.0%
!!! TTTGAGGTAAATAAAAAAGA+AGG - chr4_1:81551511-81551530 None:intergenic 20.0%
!! TGAAAATCTTGTTGAAAATA+TGG - chr4_1:81551559-81551578 None:intergenic 20.0%
!!! AAAGAATCTAAGGAAATTTT+TGG + chr4_1:81552302-81552321 Msa0577290:CDS 20.0%
! ATTCTCTATTACTACTTTCA+TGG + chr4_1:81551397-81551416 Msa0577290:CDS 25.0%
!!! TTTGGTTTTGGTTATTGATA+TGG - chr4_1:81551432-81551451 None:intergenic 25.0%
!!! TTTTTATTTACCTCAAATCC+TGG + chr4_1:81551514-81551533 Msa0577290:CDS 25.0%
! CATTCAATATAGTCATTTGA+AGG - chr4_1:81551745-81551764 None:intergenic 25.0%
! CTTCAAATGACTATATTGAA+TGG + chr4_1:81551743-81551762 Msa0577290:CDS 25.0%
!! ACATAAACAACAGAAGATTT+TGG - chr4_1:81551781-81551800 None:intergenic 25.0%
!!! TCTGTTGTTTATGTTTCTTT+TGG + chr4_1:81551787-81551806 Msa0577290:CDS 25.0%
! GTTGAAATTTAAAGATGAGT+TGG + chr4_1:81551912-81551931 Msa0577290:CDS 25.0%
! ATTCTCTATTACTACTTTCA+TGG + chr4_1:81551397-81551416 Msa0577290:CDS 25.0%
!!! TTTGGTTTTGGTTATTGATA+TGG - chr4_1:81551432-81551451 None:intergenic 25.0%
!!! TTTTTATTTACCTCAAATCC+TGG + chr4_1:81551514-81551533 Msa0577290:CDS 25.0%
! CATTCAATATAGTCATTTGA+AGG - chr4_1:81551745-81551764 None:intergenic 25.0%
! CTTCAAATGACTATATTGAA+TGG + chr4_1:81551743-81551762 Msa0577290:CDS 25.0%
!! ACATAAACAACAGAAGATTT+TGG - chr4_1:81551781-81551800 None:intergenic 25.0%
!!! TCTGTTGTTTATGTTTCTTT+TGG + chr4_1:81551787-81551806 Msa0577290:CDS 25.0%
! GTTGAAATTTAAAGATGAGT+TGG + chr4_1:81551912-81551931 Msa0577290:CDS 25.0%
!! TATAAGATTGGTGATGAAGT+CGG - chr4_1:81551242-81551261 None:intergenic 30.0%
ATAGAGAATATCAAACACTG+TGG - chr4_1:81551386-81551405 None:intergenic 30.0%
!! ATTCAATGGTAGTTTGGTTT+TGG - chr4_1:81551450-81551469 None:intergenic 30.0%
! AAGGTGTTTACGAGTATTAT+CGG - chr4_1:81551604-81551623 None:intergenic 30.0%
! TAAAGATGAGTTGGAAAAGA+AGG + chr4_1:81551921-81551940 Msa0577290:CDS 30.0%
! AAAGATGAGTTGGAAAAGAA+GGG + chr4_1:81551922-81551941 Msa0577290:CDS 30.0%
GTTCTTTCACATTCTTCTTT+GGG + chr4_1:81551976-81551995 Msa0577290:CDS 30.0%
CAAAACTAATTGAAGATGTG+TGG + chr4_1:81552100-81552119 Msa0577290:CDS 30.0%
!! GGATGAAATTAGAAAGTGTT+TGG + chr4_1:81552176-81552195 Msa0577290:CDS 30.0%
!! AATTAGAAAGTGTTTGGAAG+TGG + chr4_1:81552182-81552201 Msa0577290:CDS 30.0%
TGAGAAAGAATGCAATGAAA+TGG + chr4_1:81552235-81552254 Msa0577290:CDS 30.0%
AAAGAATGCAATGAAATGGA+AGG + chr4_1:81552239-81552258 Msa0577290:CDS 30.0%
AAGAATGCAATGAAATGGAA+GGG + chr4_1:81552240-81552259 Msa0577290:CDS 30.0%
! TTTCCTTAGATTCTTTTCTG+CGG - chr4_1:81552298-81552317 None:intergenic 30.0%
!! TATAAGATTGGTGATGAAGT+CGG - chr4_1:81551242-81551261 None:intergenic 30.0%
ATAGAGAATATCAAACACTG+TGG - chr4_1:81551386-81551405 None:intergenic 30.0%
!! ATTCAATGGTAGTTTGGTTT+TGG - chr4_1:81551450-81551469 None:intergenic 30.0%
! AAGGTGTTTACGAGTATTAT+CGG - chr4_1:81551604-81551623 None:intergenic 30.0%
! TAAAGATGAGTTGGAAAAGA+AGG + chr4_1:81551921-81551940 Msa0577290:CDS 30.0%
! AAAGATGAGTTGGAAAAGAA+GGG + chr4_1:81551922-81551941 Msa0577290:CDS 30.0%
GTTCTTTCACATTCTTCTTT+GGG + chr4_1:81551976-81551995 Msa0577290:CDS 30.0%
CAAAACTAATTGAAGATGTG+TGG + chr4_1:81552100-81552119 Msa0577290:CDS 30.0%
!! GGATGAAATTAGAAAGTGTT+TGG + chr4_1:81552176-81552195 Msa0577290:CDS 30.0%
!! AATTAGAAAGTGTTTGGAAG+TGG + chr4_1:81552182-81552201 Msa0577290:CDS 30.0%
TGAGAAAGAATGCAATGAAA+TGG + chr4_1:81552235-81552254 Msa0577290:CDS 30.0%
AAAGAATGCAATGAAATGGA+AGG + chr4_1:81552239-81552258 Msa0577290:CDS 30.0%
AAGAATGCAATGAAATGGAA+GGG + chr4_1:81552240-81552259 Msa0577290:CDS 30.0%
! TTTCCTTAGATTCTTTTCTG+CGG - chr4_1:81552298-81552317 None:intergenic 30.0%
TGTTGAACTGTGAAGTGTAT+AGG - chr4_1:81551210-81551229 None:intergenic 35.0%
! TTTGGCAGAGAGTATAAGAT+TGG - chr4_1:81551254-81551273 None:intergenic 35.0%
GAAAGGTTTGGATTCTTGTT+TGG - chr4_1:81551272-81551291 None:intergenic 35.0%
!!! TGGTAGTTTGGTTTTGGTTT+TGG - chr4_1:81551444-81551463 None:intergenic 35.0%
CTGGTAATTCAATGGTAGTT+TGG - chr4_1:81551456-81551475 None:intergenic 35.0%
CAAACTACCATTGAATTACC+AGG + chr4_1:81551454-81551473 Msa0577290:CDS 35.0%
! AAAAAAGAAGGTATGTCACG+TGG - chr4_1:81551499-81551518 None:intergenic 35.0%
AAAACAAAAGACAAGTCACC+AGG - chr4_1:81551535-81551554 None:intergenic 35.0%
GTTTACGAGTATTATCGGAT+TGG - chr4_1:81551599-81551618 None:intergenic 35.0%
GAGGTTATGATGAGTATCAA+CGG - chr4_1:81551656-81551675 None:intergenic 35.0%
AACCTCAAAATGATTCCCAT+CGG + chr4_1:81551670-81551689 Msa0577290:CDS 35.0%
AGTCATTTGAAGGTTGCAAT+AGG - chr4_1:81551735-81551754 None:intergenic 35.0%
! ATTGTGGGTTTTCATTCTTG+TGG + chr4_1:81551866-81551885 Msa0577290:CDS 35.0%
! TTGTGGGTTTTCATTCTTGT+GGG + chr4_1:81551867-81551886 Msa0577290:CDS 35.0%
! AAGATGAGTTGGAAAAGAAG+GGG + chr4_1:81551923-81551942 Msa0577290:CDS 35.0%
GGTTCTTTCACATTCTTCTT+TGG + chr4_1:81551975-81551994 Msa0577290:CDS 35.0%
!!! GGTTGTTTTTTGACTCATTG+TGG + chr4_1:81551997-81552016 Msa0577290:CDS 35.0%
!!! GTTTTTTGACTCATTGTGGT+TGG + chr4_1:81552001-81552020 Msa0577290:CDS 35.0%
! GACTTTGGAAAGTTTGGTAT+CGG + chr4_1:81552029-81552048 Msa0577290:CDS 35.0%
! ACTTTGGAAAGTTTGGTATC+GGG + chr4_1:81552030-81552049 Msa0577290:CDS 35.0%
ATTGAAGATGTGTGGAAGAT+AGG + chr4_1:81552108-81552127 Msa0577290:CDS 35.0%
TTGAAGATGTGTGGAAGATA+GGG + chr4_1:81552109-81552128 Msa0577290:CDS 35.0%
!! AGTTGATGATAAAGTGGATG+AGG + chr4_1:81552137-81552156 Msa0577290:CDS 35.0%
AGAATGCAATGAAATGGAAG+GGG + chr4_1:81552241-81552260 Msa0577290:CDS 35.0%
! TTCCTTAGATTCTTTTCTGC+GGG - chr4_1:81552297-81552316 None:intergenic 35.0%
ATTATTGGAGAATGCATGCA+TGG + chr4_1:81552332-81552351 Msa0577290:CDS 35.0%
TGTTGAACTGTGAAGTGTAT+AGG - chr4_1:81551210-81551229 None:intergenic 35.0%
! TTTGGCAGAGAGTATAAGAT+TGG - chr4_1:81551254-81551273 None:intergenic 35.0%
GAAAGGTTTGGATTCTTGTT+TGG - chr4_1:81551272-81551291 None:intergenic 35.0%
!!! TGGTAGTTTGGTTTTGGTTT+TGG - chr4_1:81551444-81551463 None:intergenic 35.0%
CTGGTAATTCAATGGTAGTT+TGG - chr4_1:81551456-81551475 None:intergenic 35.0%
CAAACTACCATTGAATTACC+AGG + chr4_1:81551454-81551473 Msa0577290:CDS 35.0%
! AAAAAAGAAGGTATGTCACG+TGG - chr4_1:81551499-81551518 None:intergenic 35.0%
AAAACAAAAGACAAGTCACC+AGG - chr4_1:81551535-81551554 None:intergenic 35.0%
GTTTACGAGTATTATCGGAT+TGG - chr4_1:81551599-81551618 None:intergenic 35.0%
GAGGTTATGATGAGTATCAA+CGG - chr4_1:81551656-81551675 None:intergenic 35.0%
AACCTCAAAATGATTCCCAT+CGG + chr4_1:81551670-81551689 Msa0577290:CDS 35.0%
AGTCATTTGAAGGTTGCAAT+AGG - chr4_1:81551735-81551754 None:intergenic 35.0%
! ATTGTGGGTTTTCATTCTTG+TGG + chr4_1:81551866-81551885 Msa0577290:CDS 35.0%
! TTGTGGGTTTTCATTCTTGT+GGG + chr4_1:81551867-81551886 Msa0577290:CDS 35.0%
! AAGATGAGTTGGAAAAGAAG+GGG + chr4_1:81551923-81551942 Msa0577290:CDS 35.0%
GGTTCTTTCACATTCTTCTT+TGG + chr4_1:81551975-81551994 Msa0577290:CDS 35.0%
!!! GGTTGTTTTTTGACTCATTG+TGG + chr4_1:81551997-81552016 Msa0577290:CDS 35.0%
!!! GTTTTTTGACTCATTGTGGT+TGG + chr4_1:81552001-81552020 Msa0577290:CDS 35.0%
! GACTTTGGAAAGTTTGGTAT+CGG + chr4_1:81552029-81552048 Msa0577290:CDS 35.0%
! ACTTTGGAAAGTTTGGTATC+GGG + chr4_1:81552030-81552049 Msa0577290:CDS 35.0%
ATTGAAGATGTGTGGAAGAT+AGG + chr4_1:81552108-81552127 Msa0577290:CDS 35.0%
TTGAAGATGTGTGGAAGATA+GGG + chr4_1:81552109-81552128 Msa0577290:CDS 35.0%
!! AGTTGATGATAAAGTGGATG+AGG + chr4_1:81552137-81552156 Msa0577290:CDS 35.0%
AGAATGCAATGAAATGGAAG+GGG + chr4_1:81552241-81552260 Msa0577290:CDS 35.0%
! TTCCTTAGATTCTTTTCTGC+GGG - chr4_1:81552297-81552316 None:intergenic 35.0%
ATTATTGGAGAATGCATGCA+TGG + chr4_1:81552332-81552351 Msa0577290:CDS 35.0%
TGAACTGTGAAGTGTATAGG+TGG - chr4_1:81551207-81551226 None:intergenic 40.0%
GAGTAAGCAAGTGAAAGGTT+TGG - chr4_1:81551284-81551303 None:intergenic 40.0%
GTGTAGAGTAAGCAAGTGAA+AGG - chr4_1:81551289-81551308 None:intergenic 40.0%
TCTACACGTTAATGCTTCCT+TGG + chr4_1:81551302-81551321 Msa0577290:CDS 40.0%
CTACACGTTAATGCTTCCTT+GGG + chr4_1:81551303-81551322 Msa0577290:CDS 40.0%
AGAATATCAAACACTGTGGC+GGG - chr4_1:81551382-81551401 None:intergenic 40.0%
GAGAATATCAAACACTGTGG+CGG - chr4_1:81551383-81551402 None:intergenic 40.0%
!! CGTAAACACCTTTGAAGCTT+TGG + chr4_1:81551612-81551631 Msa0577290:CDS 40.0%
CAAGTGCGTTGTTGAATTGT+GGG + chr4_1:81551851-81551870 Msa0577290:CDS 40.0%
GGTCATGAGAGAAAAAGAAG+AGG + chr4_1:81551888-81551907 Msa0577290:CDS 40.0%
! GAACTCGACTTTGGAAAGTT+TGG + chr4_1:81552023-81552042 Msa0577290:CDS 40.0%
! CTTTGGAAAGTTTGGTATCG+GGG + chr4_1:81552031-81552050 Msa0577290:CDS 40.0%
! TTTGGAAAGTTTGGTATCGG+GGG + chr4_1:81552032-81552051 Msa0577290:CDS 40.0%
! GTCTTTTGATCAGTCCATTG+AGG - chr4_1:81552075-81552094 None:intergenic 40.0%
TGAAGATGTGTGGAAGATAG+GGG + chr4_1:81552110-81552129 Msa0577290:CDS 40.0%
!! GGTGAGAGTTGATGATAAAG+TGG + chr4_1:81552131-81552150 Msa0577290:CDS 40.0%
GATGATAAAGTGGATGAGGA+TGG + chr4_1:81552141-81552160 Msa0577290:CDS 40.0%
ATGAGGATGGAATTGTAGGA+GGG + chr4_1:81552154-81552173 Msa0577290:CDS 40.0%
! AAAGTGTTTGGAAGTGGTGA+TGG + chr4_1:81552188-81552207 Msa0577290:CDS 40.0%
AAGTGTTTGGAAGTGGTGAT+GGG + chr4_1:81552189-81552208 Msa0577290:CDS 40.0%
TGAACTGTGAAGTGTATAGG+TGG - chr4_1:81551207-81551226 None:intergenic 40.0%
GAGTAAGCAAGTGAAAGGTT+TGG - chr4_1:81551284-81551303 None:intergenic 40.0%
GTGTAGAGTAAGCAAGTGAA+AGG - chr4_1:81551289-81551308 None:intergenic 40.0%
TCTACACGTTAATGCTTCCT+TGG + chr4_1:81551302-81551321 Msa0577290:CDS 40.0%
CTACACGTTAATGCTTCCTT+GGG + chr4_1:81551303-81551322 Msa0577290:CDS 40.0%
AGAATATCAAACACTGTGGC+GGG - chr4_1:81551382-81551401 None:intergenic 40.0%
GAGAATATCAAACACTGTGG+CGG - chr4_1:81551383-81551402 None:intergenic 40.0%
!! CGTAAACACCTTTGAAGCTT+TGG + chr4_1:81551612-81551631 Msa0577290:CDS 40.0%
CAAGTGCGTTGTTGAATTGT+GGG + chr4_1:81551851-81551870 Msa0577290:CDS 40.0%
GGTCATGAGAGAAAAAGAAG+AGG + chr4_1:81551888-81551907 Msa0577290:CDS 40.0%
! GAACTCGACTTTGGAAAGTT+TGG + chr4_1:81552023-81552042 Msa0577290:CDS 40.0%
! CTTTGGAAAGTTTGGTATCG+GGG + chr4_1:81552031-81552050 Msa0577290:CDS 40.0%
! TTTGGAAAGTTTGGTATCGG+GGG + chr4_1:81552032-81552051 Msa0577290:CDS 40.0%
! GTCTTTTGATCAGTCCATTG+AGG - chr4_1:81552075-81552094 None:intergenic 40.0%
TGAAGATGTGTGGAAGATAG+GGG + chr4_1:81552110-81552129 Msa0577290:CDS 40.0%
!! GGTGAGAGTTGATGATAAAG+TGG + chr4_1:81552131-81552150 Msa0577290:CDS 40.0%
GATGATAAAGTGGATGAGGA+TGG + chr4_1:81552141-81552160 Msa0577290:CDS 40.0%
ATGAGGATGGAATTGTAGGA+GGG + chr4_1:81552154-81552173 Msa0577290:CDS 40.0%
! AAAGTGTTTGGAAGTGGTGA+TGG + chr4_1:81552188-81552207 Msa0577290:CDS 40.0%
AAGTGTTTGGAAGTGGTGAT+GGG + chr4_1:81552189-81552208 Msa0577290:CDS 40.0%
ATTGAAGGGCTGGGTTTATG+TGG - chr4_1:81551006-81551025 None:intergenic 45.0%
GAGTCGCTTGGCAAATTGAA+GGG - chr4_1:81551020-81551039 None:intergenic 45.0%
TGAGTCGCTTGGCAAATTGA+AGG - chr4_1:81551021-81551040 None:intergenic 45.0%
TGCCAAGCGACTCATATCAA+TGG + chr4_1:81551027-81551046 Msa0577290:CDS 45.0%
GCCAAGCGACTCATATCAAT+GGG + chr4_1:81551028-81551047 Msa0577290:CDS 45.0%
ACCCATTGATATGAGTCGCT+TGG - chr4_1:81551032-81551051 None:intergenic 45.0%
!! TGGATGGATTGAGGAGGATT+AGG - chr4_1:81551096-81551115 None:intergenic 45.0%
!! TGGTTATGGATGGATTGAGG+AGG - chr4_1:81551102-81551121 None:intergenic 45.0%
!! TGGTGGTTATGGATGGATTG+AGG - chr4_1:81551105-81551124 None:intergenic 45.0%
! TTGGAGATGGTGGTTATGGA+TGG - chr4_1:81551112-81551131 None:intergenic 45.0%
GTATAGGTGGAAATCAGCGT+CGG - chr4_1:81551194-81551213 None:intergenic 45.0%
TTGAATCCACGAGCTACTTG+TGG - chr4_1:81551331-81551350 None:intergenic 45.0%
CAATCCAGAGTTTAGCTGAG+CGG - chr4_1:81551357-81551376 None:intergenic 45.0%
GGGCAATCCTGGTAATTCAA+TGG - chr4_1:81551464-81551483 None:intergenic 45.0%
AGACAAGTCACCAGGATTTG+AGG - chr4_1:81551527-81551546 None:intergenic 45.0%
! GTCCGATGGGAATCATTTTG+AGG - chr4_1:81551675-81551694 None:intergenic 45.0%
!! CTAAAGGAAGTACTACCGGA+GGG - chr4_1:81551706-81551725 None:intergenic 45.0%
TCCGGTAGTACTTCCTTTAG+CGG + chr4_1:81551706-81551725 Msa0577290:CDS 45.0%
!! ACCGCTAAAGGAAGTACTAC+CGG - chr4_1:81551710-81551729 None:intergenic 45.0%
TTGCAATAGGTCACCGCTAA+AGG - chr4_1:81551722-81551741 None:intergenic 45.0%
GCAAGTGCGTTGTTGAATTG+TGG + chr4_1:81551850-81551869 Msa0577290:CDS 45.0%
AGAAGGGGAAGATAGTGAAG+TGG + chr4_1:81551938-81551957 Msa0577290:CDS 45.0%
AGTGAAGTGGTGTTCTCAAG+TGG + chr4_1:81551951-81551970 Msa0577290:CDS 45.0%
TTGTGGTTGGAACTCGACTT+TGG + chr4_1:81552014-81552033 Msa0577290:CDS 45.0%
CATTGAGGAAATGCCACTAG+AGG - chr4_1:81552060-81552079 None:intergenic 45.0%
CTCTAGTGGCATTTCCTCAA+TGG + chr4_1:81552058-81552077 Msa0577290:CDS 45.0%
GTGGATGAGGATGGAATTGT+AGG + chr4_1:81552150-81552169 Msa0577290:CDS 45.0%
GATGAGGATGGAATTGTAGG+AGG + chr4_1:81552153-81552172 Msa0577290:CDS 45.0%
TGAGGATGGAATTGTAGGAG+GGG + chr4_1:81552155-81552174 Msa0577290:CDS 45.0%
! AGTGTTTGGAAGTGGTGATG+GGG + chr4_1:81552190-81552209 Msa0577290:CDS 45.0%
TGCAATGAAATGGAAGGGGT+TGG + chr4_1:81552245-81552264 Msa0577290:CDS 45.0%
GTCCCGCAGAAAAGAATCTA+AGG + chr4_1:81552292-81552311 Msa0577290:CDS 45.0%
GGAGAATGCATGCATGGATA+CGG + chr4_1:81552338-81552357 Msa0577290:CDS 45.0%
ATTGAAGGGCTGGGTTTATG+TGG - chr4_1:81551006-81551025 None:intergenic 45.0%
GAGTCGCTTGGCAAATTGAA+GGG - chr4_1:81551020-81551039 None:intergenic 45.0%
TGAGTCGCTTGGCAAATTGA+AGG - chr4_1:81551021-81551040 None:intergenic 45.0%
TGCCAAGCGACTCATATCAA+TGG + chr4_1:81551027-81551046 Msa0577290:CDS 45.0%
GCCAAGCGACTCATATCAAT+GGG + chr4_1:81551028-81551047 Msa0577290:CDS 45.0%
ACCCATTGATATGAGTCGCT+TGG - chr4_1:81551032-81551051 None:intergenic 45.0%
!! TGGATGGATTGAGGAGGATT+AGG - chr4_1:81551096-81551115 None:intergenic 45.0%
!! TGGTTATGGATGGATTGAGG+AGG - chr4_1:81551102-81551121 None:intergenic 45.0%
!! TGGTGGTTATGGATGGATTG+AGG - chr4_1:81551105-81551124 None:intergenic 45.0%
! TTGGAGATGGTGGTTATGGA+TGG - chr4_1:81551112-81551131 None:intergenic 45.0%
GTATAGGTGGAAATCAGCGT+CGG - chr4_1:81551194-81551213 None:intergenic 45.0%
TTGAATCCACGAGCTACTTG+TGG - chr4_1:81551331-81551350 None:intergenic 45.0%
CAATCCAGAGTTTAGCTGAG+CGG - chr4_1:81551357-81551376 None:intergenic 45.0%
GGGCAATCCTGGTAATTCAA+TGG - chr4_1:81551464-81551483 None:intergenic 45.0%
AGACAAGTCACCAGGATTTG+AGG - chr4_1:81551527-81551546 None:intergenic 45.0%
! GTCCGATGGGAATCATTTTG+AGG - chr4_1:81551675-81551694 None:intergenic 45.0%
!! CTAAAGGAAGTACTACCGGA+GGG - chr4_1:81551706-81551725 None:intergenic 45.0%
TCCGGTAGTACTTCCTTTAG+CGG + chr4_1:81551706-81551725 Msa0577290:CDS 45.0%
!! ACCGCTAAAGGAAGTACTAC+CGG - chr4_1:81551710-81551729 None:intergenic 45.0%
TTGCAATAGGTCACCGCTAA+AGG - chr4_1:81551722-81551741 None:intergenic 45.0%
GCAAGTGCGTTGTTGAATTG+TGG + chr4_1:81551850-81551869 Msa0577290:CDS 45.0%
AGAAGGGGAAGATAGTGAAG+TGG + chr4_1:81551938-81551957 Msa0577290:CDS 45.0%
AGTGAAGTGGTGTTCTCAAG+TGG + chr4_1:81551951-81551970 Msa0577290:CDS 45.0%
TTGTGGTTGGAACTCGACTT+TGG + chr4_1:81552014-81552033 Msa0577290:CDS 45.0%
CATTGAGGAAATGCCACTAG+AGG - chr4_1:81552060-81552079 None:intergenic 45.0%
CTCTAGTGGCATTTCCTCAA+TGG + chr4_1:81552058-81552077 Msa0577290:CDS 45.0%
GTGGATGAGGATGGAATTGT+AGG + chr4_1:81552150-81552169 Msa0577290:CDS 45.0%
GATGAGGATGGAATTGTAGG+AGG + chr4_1:81552153-81552172 Msa0577290:CDS 45.0%
TGAGGATGGAATTGTAGGAG+GGG + chr4_1:81552155-81552174 Msa0577290:CDS 45.0%
! AGTGTTTGGAAGTGGTGATG+GGG + chr4_1:81552190-81552209 Msa0577290:CDS 45.0%
TGCAATGAAATGGAAGGGGT+TGG + chr4_1:81552245-81552264 Msa0577290:CDS 45.0%
GTCCCGCAGAAAAGAATCTA+AGG + chr4_1:81552292-81552311 Msa0577290:CDS 45.0%
GGAGAATGCATGCATGGATA+CGG + chr4_1:81552338-81552357 Msa0577290:CDS 45.0%
TTACCAGAAGGATGTGGTGG+TGG - chr4_1:81550967-81550986 None:intergenic 50.0%
ACGTTACCAGAAGGATGTGG+TGG - chr4_1:81550970-81550989 None:intergenic 50.0%
GGTACGTTACCAGAAGGATG+TGG - chr4_1:81550973-81550992 None:intergenic 50.0%
! GGTTTATGTGGCCTTGAGCT+GGG - chr4_1:81550994-81551013 None:intergenic 50.0%
GCTTGGCAAATTGAAGGGCT+GGG - chr4_1:81551015-81551034 None:intergenic 50.0%
GATTGAGGAGGATTAGGCGA+CGG - chr4_1:81551090-81551109 None:intergenic 50.0%
! GAGGTTGGAGATGGTGGTTA+TGG - chr4_1:81551116-81551135 None:intergenic 50.0%
TATGGAGAGGTTGGAGATGG+TGG - chr4_1:81551122-81551141 None:intergenic 50.0%
GGTTATGGAGAGGTTGGAGA+TGG - chr4_1:81551125-81551144 None:intergenic 50.0%
!! ATCAGCGTCGGTCTTTGTGA+TGG - chr4_1:81551182-81551201 None:intergenic 50.0%
ACTTCACAGTTCAACACCCG+TGG + chr4_1:81551214-81551233 Msa0577290:CDS 50.0%
GATAGTGTGAAGGGCAATCC+TGG - chr4_1:81551475-81551494 None:intergenic 50.0%
TCACGTGGCGATAGTGTGAA+GGG - chr4_1:81551484-81551503 None:intergenic 50.0%
! CTCTGGCTCCAAAGCTTCAA+AGG - chr4_1:81551623-81551642 None:intergenic 50.0%
!! CTTTGAAGCTTTGGAGCCAG+AGG + chr4_1:81551621-81551640 Msa0577290:CDS 50.0%
GAGGGAATCAATGGTCCGAT+GGG - chr4_1:81551688-81551707 None:intergenic 50.0%
!! ATCGGACCATTGATTCCCTC+CGG + chr4_1:81551688-81551707 Msa0577290:CDS 50.0%
GTACTACCGGAGGGAATCAA+TGG - chr4_1:81551697-81551716 None:intergenic 50.0%
!! GCTAAAGGAAGTACTACCGG+AGG - chr4_1:81551707-81551726 None:intergenic 50.0%
GAAGTGGTGTTCTCAAGTGG+AGG + chr4_1:81551954-81551973 Msa0577290:CDS 50.0%
TTACCAGAAGGATGTGGTGG+TGG - chr4_1:81550967-81550986 None:intergenic 50.0%
ACGTTACCAGAAGGATGTGG+TGG - chr4_1:81550970-81550989 None:intergenic 50.0%
GGTACGTTACCAGAAGGATG+TGG - chr4_1:81550973-81550992 None:intergenic 50.0%
! GGTTTATGTGGCCTTGAGCT+GGG - chr4_1:81550994-81551013 None:intergenic 50.0%
GCTTGGCAAATTGAAGGGCT+GGG - chr4_1:81551015-81551034 None:intergenic 50.0%
GATTGAGGAGGATTAGGCGA+CGG - chr4_1:81551090-81551109 None:intergenic 50.0%
! GAGGTTGGAGATGGTGGTTA+TGG - chr4_1:81551116-81551135 None:intergenic 50.0%
TATGGAGAGGTTGGAGATGG+TGG - chr4_1:81551122-81551141 None:intergenic 50.0%
GGTTATGGAGAGGTTGGAGA+TGG - chr4_1:81551125-81551144 None:intergenic 50.0%
!! ATCAGCGTCGGTCTTTGTGA+TGG - chr4_1:81551182-81551201 None:intergenic 50.0%
ACTTCACAGTTCAACACCCG+TGG + chr4_1:81551214-81551233 Msa0577290:CDS 50.0%
GATAGTGTGAAGGGCAATCC+TGG - chr4_1:81551475-81551494 None:intergenic 50.0%
TCACGTGGCGATAGTGTGAA+GGG - chr4_1:81551484-81551503 None:intergenic 50.0%
! CTCTGGCTCCAAAGCTTCAA+AGG - chr4_1:81551623-81551642 None:intergenic 50.0%
!! CTTTGAAGCTTTGGAGCCAG+AGG + chr4_1:81551621-81551640 Msa0577290:CDS 50.0%
GAGGGAATCAATGGTCCGAT+GGG - chr4_1:81551688-81551707 None:intergenic 50.0%
!! ATCGGACCATTGATTCCCTC+CGG + chr4_1:81551688-81551707 Msa0577290:CDS 50.0%
GTACTACCGGAGGGAATCAA+TGG - chr4_1:81551697-81551716 None:intergenic 50.0%
!! GCTAAAGGAAGTACTACCGG+AGG - chr4_1:81551707-81551726 None:intergenic 50.0%
GAAGTGGTGTTCTCAAGTGG+AGG + chr4_1:81551954-81551973 Msa0577290:CDS 50.0%
!! AAGGATGTGGTGGTGGTGGT+GGG - chr4_1:81550960-81550979 None:intergenic 55.0%
GAGCTGGGTACGTTACCAGA+AGG - chr4_1:81550979-81550998 None:intergenic 55.0%
! CTGGTAACGTACCCAGCTCA+AGG + chr4_1:81550980-81550999 Msa0577290:CDS 55.0%
! GGGTTTATGTGGCCTTGAGC+TGG - chr4_1:81550995-81551014 None:intergenic 55.0%
CGCTTGGCAAATTGAAGGGC+TGG - chr4_1:81551016-81551035 None:intergenic 55.0%
GAAGGGGGTTATGGAGAGGT+TGG - chr4_1:81551131-81551150 None:intergenic 55.0%
TCCATAACCCCCTTCTCCGA+TGG + chr4_1:81551136-81551155 Msa0577290:CDS 55.0%
TCGTCATGGCCATCGGAGAA+GGG - chr4_1:81551148-81551167 None:intergenic 55.0%
TTCTCCGATGGCCATGACGA+CGG + chr4_1:81551148-81551167 Msa0577290:CDS 55.0%
GAAACCGTCGTCATGGCCAT+CGG - chr4_1:81551155-81551174 None:intergenic 55.0%
TGGCGATGAAACCGTCGTCA+TGG - chr4_1:81551162-81551181 None:intergenic 55.0%
! TGGTGATGAAGTCGGAGCCA+CGG - chr4_1:81551234-81551253 None:intergenic 55.0%
ACCTCCGCTCAGCTAAACTC+TGG + chr4_1:81551350-81551369 Msa0577290:CDS 55.0%
TCCAGAGTTTAGCTGAGCGG+AGG - chr4_1:81551354-81551373 None:intergenic 55.0%
GTCACGTGGCGATAGTGTGA+AGG - chr4_1:81551485-81551504 None:intergenic 55.0%
!! TCAACGGCTCTAAGTGCCTC+TGG - chr4_1:81551640-81551659 None:intergenic 55.0%
GGAGGGAATCAATGGTCCGA+TGG - chr4_1:81551689-81551708 None:intergenic 55.0%
!! TTGGAAGTGGTGATGGGGAG+AGG + chr4_1:81552195-81552214 Msa0577290:CDS 55.0%
! GTGATGGGGAGAGGAGAGAA+AGG + chr4_1:81552204-81552223 Msa0577290:CDS 55.0%
!! ATGGAAGGGGTTGGCTAGAG+AGG + chr4_1:81552254-81552273 Msa0577290:CDS 55.0%
!! AAGGATGTGGTGGTGGTGGT+GGG - chr4_1:81550960-81550979 None:intergenic 55.0%
GAGCTGGGTACGTTACCAGA+AGG - chr4_1:81550979-81550998 None:intergenic 55.0%
! CTGGTAACGTACCCAGCTCA+AGG + chr4_1:81550980-81550999 Msa0577290:CDS 55.0%
! GGGTTTATGTGGCCTTGAGC+TGG - chr4_1:81550995-81551014 None:intergenic 55.0%
CGCTTGGCAAATTGAAGGGC+TGG - chr4_1:81551016-81551035 None:intergenic 55.0%
GAAGGGGGTTATGGAGAGGT+TGG - chr4_1:81551131-81551150 None:intergenic 55.0%
TCCATAACCCCCTTCTCCGA+TGG + chr4_1:81551136-81551155 Msa0577290:CDS 55.0%
TCGTCATGGCCATCGGAGAA+GGG - chr4_1:81551148-81551167 None:intergenic 55.0%
TTCTCCGATGGCCATGACGA+CGG + chr4_1:81551148-81551167 Msa0577290:CDS 55.0%
GAAACCGTCGTCATGGCCAT+CGG - chr4_1:81551155-81551174 None:intergenic 55.0%
TGGCGATGAAACCGTCGTCA+TGG - chr4_1:81551162-81551181 None:intergenic 55.0%
! TGGTGATGAAGTCGGAGCCA+CGG - chr4_1:81551234-81551253 None:intergenic 55.0%
ACCTCCGCTCAGCTAAACTC+TGG + chr4_1:81551350-81551369 Msa0577290:CDS 55.0%
TCCAGAGTTTAGCTGAGCGG+AGG - chr4_1:81551354-81551373 None:intergenic 55.0%
GTCACGTGGCGATAGTGTGA+AGG - chr4_1:81551485-81551504 None:intergenic 55.0%
!! TCAACGGCTCTAAGTGCCTC+TGG - chr4_1:81551640-81551659 None:intergenic 55.0%
GGAGGGAATCAATGGTCCGA+TGG - chr4_1:81551689-81551708 None:intergenic 55.0%
!! TTGGAAGTGGTGATGGGGAG+AGG + chr4_1:81552195-81552214 Msa0577290:CDS 55.0%
! GTGATGGGGAGAGGAGAGAA+AGG + chr4_1:81552204-81552223 Msa0577290:CDS 55.0%
!! ATGGAAGGGGTTGGCTAGAG+AGG + chr4_1:81552254-81552273 Msa0577290:CDS 55.0%
!! GAAGGATGTGGTGGTGGTGG+TGG - chr4_1:81550961-81550980 None:intergenic 60.0%
!! CCAGAAGGATGTGGTGGTGG+TGG - chr4_1:81550964-81550983 None:intergenic 60.0%
CCACCACCACCACATCCTTC+TGG + chr4_1:81550961-81550980 Msa0577290:CDS 60.0%
CGGTAGAGGTGGAGGGTGAT+AGG - chr4_1:81551070-81551089 None:intergenic 60.0%
TAGGCGACGGTAGAGGTGGA+GGG - chr4_1:81551077-81551096 None:intergenic 60.0%
TTAGGCGACGGTAGAGGTGG+AGG - chr4_1:81551078-81551097 None:intergenic 60.0%
GGATTAGGCGACGGTAGAGG+TGG - chr4_1:81551081-81551100 None:intergenic 60.0%
GGAGGATTAGGCGACGGTAG+AGG - chr4_1:81551084-81551103 None:intergenic 60.0%
CGGAGAAGGGGGTTATGGAG+AGG - chr4_1:81551135-81551154 None:intergenic 60.0%
GCCATCGGAGAAGGGGGTTA+TGG - chr4_1:81551140-81551159 None:intergenic 60.0%
GTCATGGCCATCGGAGAAGG+GGG - chr4_1:81551146-81551165 None:intergenic 60.0%
CGTCATGGCCATCGGAGAAG+GGG - chr4_1:81551147-81551166 None:intergenic 60.0%
GTCGTCATGGCCATCGGAGA+AGG - chr4_1:81551149-81551168 None:intergenic 60.0%
GGTGATGAAGTCGGAGCCAC+GGG - chr4_1:81551233-81551252 None:intergenic 60.0%
CGAGCTACTTGTGGAGCCCA+AGG - chr4_1:81551322-81551341 None:intergenic 60.0%
TGGGCTCCACAAGTAGCTCG+TGG + chr4_1:81551322-81551341 Msa0577290:CDS 60.0%
! GGTATCGGGGGTTCCTCTAG+TGG + chr4_1:81552044-81552063 Msa0577290:CDS 60.0%
GGGGAGAGGAGAGAAAGGAG+AGG + chr4_1:81552209-81552228 Msa0577290:CDS 60.0%
!! AAGGGGTTGGCTAGAGAGGC+AGG + chr4_1:81552258-81552277 Msa0577290:CDS 60.0%
!! AGGGGTTGGCTAGAGAGGCA+GGG + chr4_1:81552259-81552278 Msa0577290:CDS 60.0%
GTTGGCTAGAGAGGCAGGGA+AGG + chr4_1:81552263-81552282 Msa0577290:CDS 60.0%
GCTAGAGAGGCAGGGAAGGA+AGG + chr4_1:81552267-81552286 Msa0577290:CDS 60.0%
AGAGAGGCAGGGAAGGAAGG+TGG + chr4_1:81552270-81552289 Msa0577290:CDS 60.0%
!! GAAGGATGTGGTGGTGGTGG+TGG - chr4_1:81550961-81550980 None:intergenic 60.0%
!! CCAGAAGGATGTGGTGGTGG+TGG - chr4_1:81550964-81550983 None:intergenic 60.0%
CCACCACCACCACATCCTTC+TGG + chr4_1:81550961-81550980 Msa0577290:CDS 60.0%
CGGTAGAGGTGGAGGGTGAT+AGG - chr4_1:81551070-81551089 None:intergenic 60.0%
TAGGCGACGGTAGAGGTGGA+GGG - chr4_1:81551077-81551096 None:intergenic 60.0%
TTAGGCGACGGTAGAGGTGG+AGG - chr4_1:81551078-81551097 None:intergenic 60.0%
GGATTAGGCGACGGTAGAGG+TGG - chr4_1:81551081-81551100 None:intergenic 60.0%
GGAGGATTAGGCGACGGTAG+AGG - chr4_1:81551084-81551103 None:intergenic 60.0%
CGGAGAAGGGGGTTATGGAG+AGG - chr4_1:81551135-81551154 None:intergenic 60.0%
GCCATCGGAGAAGGGGGTTA+TGG - chr4_1:81551140-81551159 None:intergenic 60.0%
GTCATGGCCATCGGAGAAGG+GGG - chr4_1:81551146-81551165 None:intergenic 60.0%
CGTCATGGCCATCGGAGAAG+GGG - chr4_1:81551147-81551166 None:intergenic 60.0%
GTCGTCATGGCCATCGGAGA+AGG - chr4_1:81551149-81551168 None:intergenic 60.0%
GGTGATGAAGTCGGAGCCAC+GGG - chr4_1:81551233-81551252 None:intergenic 60.0%
CGAGCTACTTGTGGAGCCCA+AGG - chr4_1:81551322-81551341 None:intergenic 60.0%
TGGGCTCCACAAGTAGCTCG+TGG + chr4_1:81551322-81551341 Msa0577290:CDS 60.0%
! GGTATCGGGGGTTCCTCTAG+TGG + chr4_1:81552044-81552063 Msa0577290:CDS 60.0%
GGGGAGAGGAGAGAAAGGAG+AGG + chr4_1:81552209-81552228 Msa0577290:CDS 60.0%
!! AAGGGGTTGGCTAGAGAGGC+AGG + chr4_1:81552258-81552277 Msa0577290:CDS 60.0%
!! AGGGGTTGGCTAGAGAGGCA+GGG + chr4_1:81552259-81552278 Msa0577290:CDS 60.0%
GTTGGCTAGAGAGGCAGGGA+AGG + chr4_1:81552263-81552282 Msa0577290:CDS 60.0%
GCTAGAGAGGCAGGGAAGGA+AGG + chr4_1:81552267-81552286 Msa0577290:CDS 60.0%
AGAGAGGCAGGGAAGGAAGG+TGG + chr4_1:81552270-81552289 Msa0577290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81550953 81552371 81550953 ID=Msa0577290;Name=Msa0577290
chr4_1 mRNA 81550953 81552371 81550953 ID=Msa0577290-mRNA-1;Parent=Msa0577290;Name=Msa0577290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|472
chr4_1 exon 81550953 81552371 81550953 ID=Msa0577290-mRNA-1:exon:29365;Parent=Msa0577290-mRNA-1
chr4_1 CDS 81550953 81552371 81550953 ID=Msa0577290-mRNA-1:cds;Parent=Msa0577290-mRNA-1
Gene Sequence

>Msa0577290

ATGTCCCACCACCACCACCACATCCTTCTGGTAACGTACCCAGCTCAAGGCCACATAAACCCAGCCCTTCAATTTGCCAAGCGACTCATATCAATGGGTGCACATGTCACTCTTCCTATCACCCTCCACCTCTACCGTCGCCTAATCCTCCTCAATCCATCCATAACCACCATCTCCAACCTCTCCATAACCCCCTTCTCCGATGGCCATGACGACGGTTTCATCGCCATCACAAAGACCGACGCTGATTTCCACCTATACACTTCACAGTTCAACACCCGTGGCTCCGACTTCATCACCAATCTTATACTCTCTGCCAAACAAGAATCCAAACCTTTCACTTGCTTACTCTACACGTTAATGCTTCCTTGGGCTCCACAAGTAGCTCGTGGATTCAACCTCCGCTCAGCTAAACTCTGGATTGAACCCGCCACAGTGTTTGATATTCTCTATTACTACTTTCATGGTTATAGTAACCATATCAATAACCAAAACCAAAACCAAACTACCATTGAATTACCAGGATTGCCCTTCACACTATCGCCACGTGACATACCTTCTTTTTTATTTACCTCAAATCCTGGTGACTTGTCTTTTGTTTTTCCATATTTTCAACAAGATTTTCATGAACTCGATGTTGAAACCAATCCGATAATACTCGTAAACACCTTTGAAGCTTTGGAGCCAGAGGCACTTAGAGCCGTTGATACTCATCATAACCTCAAAATGATTCCCATCGGACCATTGATTCCCTCCGGTAGTACTTCCTTTAGCGGTGACCTATTGCAACCTTCAAATGACTATATTGAATGGTTGAACTCAAAGCCAAAATCTTCTGTTGTTTATGTTTCTTTTGGTAGTTACTTTGTTTTGTCTAAGCGACAAACAGACGAAATTGCAAGTGCGTTGTTGAATTGTGGGTTTTCATTCTTGTGGGTCATGAGAGAAAAAGAAGAGGAGTTGAAATTTAAAGATGAGTTGGAAAAGAAGGGGAAGATAGTGAAGTGGTGTTCTCAAGTGGAGGTTCTTTCACATTCTTCTTTGGGTTGTTTTTTGACTCATTGTGGTTGGAACTCGACTTTGGAAAGTTTGGTATCGGGGGTTCCTCTAGTGGCATTTCCTCAATGGACTGATCAAAAGACTAATGCAAAACTAATTGAAGATGTGTGGAAGATAGGGGTGAGAGTTGATGATAAAGTGGATGAGGATGGAATTGTAGGAGGGGATGAAATTAGAAAGTGTTTGGAAGTGGTGATGGGGAGAGGAGAGAAAGGAGAGGAATTGAGAAAGAATGCAATGAAATGGAAGGGGTTGGCTAGAGAGGCAGGGAAGGAAGGTGGTCCCGCAGAAAAGAATCTAAGGAAATTTTTGGATGATATATTATTGGAGAATGCATGCATGGATACGGCTGAAAATTGA
Protein sequence

>Msa0577290

MSHHHHHILLVTYPAQGHINPALQFAKRLISMGAHVTLPITLHLYRRLILLNPSITTISNLSITPFSDGHDDGFIAITKTDADFHLYTSQFNTRGSDFITNLILSAKQESKPFTCLLYTLMLPWAPQVARGFNLRSAKLWIEPATVFDILYYYFHGYSNHINNQNQNQTTIELPGLPFTLSPRDIPSFLFTSNPGDLSFVFPYFQQDFHELDVETNPIILVNTFEALEPEALRAVDTHHNLKMIPIGPLIPSGSTSFSGDLLQPSNDYIEWLNSKPKSSVVYVSFGSYFVLSKRQTDEIASALLNCGFSFLWVMREKEEELKFKDELEKKGKIVKWCSQVEVLSHSSLGCFLTHCGWNSTLESLVSGVPLVAFPQWTDQKTNAKLIEDVWKIGVRVDDKVDEDGIVGGDEIRKCLEVVMGRGEKGEELRKNAMKWKGLAREAGKEGGPAEKNLRKFLDDILLENACMDTAEN*