AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334480 MtrunA17_Chr2g0318521 100.000 264 0 0 1 264 1 264 0.0 538
Msa0334480 MtrunA17_Chr5g0447531 69.288 267 69 6 8 264 2 265 1.08e-125 358
Msa0334480 MtrunA17_Chr4g0051941 68.635 271 68 5 4 263 1 265 1.84e-122 350
Msa0334480 MtrunA17_Chr6g0453181 78.440 218 45 2 46 263 49 264 6.47e-120 343
Msa0334480 MtrunA17_Chr6g0453151 77.523 218 47 2 46 263 116 331 1.61e-119 345
Msa0334480 MtrunA17_Chr6g0453141 77.523 218 47 2 46 263 49 264 6.23e-119 340
Msa0334480 MtrunA17_Chr6g0453161 78.899 218 44 2 46 263 316 531 1.49e-116 344
Msa0334480 MtrunA17_Chr6g0453161 77.523 218 47 2 46 263 51 266 4.40e-115 340
Msa0334480 MtrunA17_Chr6g0464511 63.596 228 47 2 36 263 20 211 2.94e-91 268
Msa0334480 MtrunA17_Chr6g0476641 48.361 244 110 6 14 252 42 274 1.85e-58 187
Msa0334480 MtrunA17_Chr1g0157481 40.230 261 141 4 7 252 62 322 5.86e-58 187
Msa0334480 MtrunA17_Chr6g0453171 72.727 99 26 1 166 264 1 98 3.05e-41 137
Msa0334480 MtrunA17_Chr5g0448421 41.014 217 95 8 59 252 63 269 6.53e-37 131
Msa0334480 MtrunA17_Chr5g0448411 41.014 217 95 9 59 252 61 267 5.04e-36 129
Msa0334480 MtrunA17_Chr8g0345631 34.274 248 124 10 17 248 32 256 3.00e-33 122
Msa0334480 MtrunA17_Chr3g0133901 37.624 202 94 5 63 248 68 253 4.81e-32 119
Msa0334480 MtrunA17_Chr6g0462031 37.557 221 109 9 35 252 39 233 1.06e-30 114
Msa0334480 MtrunA17_Chr2g0301081 35.909 220 97 7 49 248 60 255 1.78e-30 114
Msa0334480 MtrunA17_Chr4g0006181 35.622 233 92 7 60 249 119 336 7.52e-29 112
Msa0334480 MtrunA17_Chr3g0092091 37.255 204 92 7 62 251 62 243 2.01e-27 106
Msa0334480 MtrunA17_Chr3g0113311 41.611 149 72 5 90 238 137 270 4.34e-22 92.4
Msa0334480 MtrunA17_Chr2g0279001 34.615 208 86 7 63 241 73 259 4.43e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334480 AT5G54270.1 87.547 265 32 1 1 264 1 265 2.80e-174 481
Msa0334480 AT2G05070.1 68.421 266 71 6 8 263 2 264 8.70e-124 353
Msa0334480 AT2G05100.1 68.914 267 70 6 8 264 2 265 1.59e-123 352
Msa0334480 AT3G27690.2 67.399 273 75 7 2 263 28 297 4.49e-122 350
Msa0334480 AT3G27690.1 68.401 269 75 6 1 263 1 265 9.03e-122 348
Msa0334480 AT2G34430.1 67.037 270 74 6 4 263 1 265 3.00e-118 339
Msa0334480 AT1G29930.1 65.683 271 77 6 4 263 1 266 3.69e-118 339
Msa0334480 AT1G29920.1 65.683 271 77 6 4 263 1 266 6.25e-118 338
Msa0334480 AT1G29910.1 65.683 271 77 6 4 263 1 266 6.25e-118 338
Msa0334480 AT2G34420.1 66.543 269 73 6 6 263 2 264 1.35e-117 337
Msa0334480 AT2G05100.2 62.030 266 84 7 8 259 2 264 4.98e-103 302
Msa0334480 AT1G76570.1 46.977 215 106 2 46 252 106 320 4.32e-59 191
Msa0334480 AT4G10340.1 49.524 210 97 4 46 252 62 265 5.32e-53 174
Msa0334480 AT1G61520.3 42.857 217 91 9 59 252 59 265 2.46e-39 138
Msa0334480 AT1G61520.1 42.857 217 91 9 59 252 59 265 2.46e-39 138
Msa0334480 AT1G61520.2 42.029 207 87 9 69 252 14 210 5.06e-35 125
Msa0334480 AT3G61470.1 38.140 215 99 10 49 248 50 245 4.47e-34 124
Msa0334480 AT1G45474.2 40.206 194 101 4 63 248 56 242 3.91e-33 121
Msa0334480 AT1G45474.1 40.206 194 101 4 63 248 56 242 3.91e-33 121
Msa0334480 AT3G08940.2 35.622 233 92 7 60 249 59 276 6.88e-31 116
Msa0334480 AT3G54890.1 40.206 194 96 8 63 252 55 232 2.10e-30 114
Msa0334480 AT1G19150.1 35.111 225 100 8 49 252 63 262 2.82e-28 109
Msa0334480 AT3G47470.1 37.255 204 92 6 62 251 63 244 1.97e-27 106
Msa0334480 AT5G01530.1 34.322 236 97 7 60 252 62 282 2.17e-27 107
Msa0334480 AT1G15820.1 35.096 208 85 7 63 241 70 256 3.82e-21 90.1
Msa0334480 AT2G40100.1 41.447 152 73 5 90 241 136 271 8.59e-21 89.4
Msa0334480 AT3G54890.4 37.975 158 79 7 63 217 55 196 1.67e-19 84.7
Msa0334480 AT5G28450.1 48.718 78 36 2 172 248 87 161 1.38e-14 70.5

Find 121 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGTGGTCTTGACTATTT+AGG 0.130970 2_4:-52822560 Msa0334480:CDS
ATTATGATCTTAATGATTAT+TGG 0.165795 2_4:-52822113 Msa0334480:three_prime_UTR
AGTTCTTTGTGTGCTGTTAT+AGG 0.214288 2_4:+52821897 None:intergenic
GGCATAAACCCAGGCATTAT+TGG 0.260488 2_4:+52822223 None:intergenic
CTGTTCTTGGCAAATGCTTC+AGG 0.268957 2_4:+52822887 None:intergenic
AGGACCTTTGGAGAATCTTT+TGG 0.271440 2_4:-52822267 Msa0334480:CDS
GTTCTTTGTGTGCTGTTATA+GGG 0.275058 2_4:+52821898 None:intergenic
GGAGAATTCCCTGGTGATTA+TGG 0.284769 2_4:-52822938 Msa0334480:CDS
ACCAGACAGAGTGAAATATT+TGG 0.297922 2_4:-52822996 Msa0334480:CDS
TATTTATATGACTTCCTTGT+TGG 0.307231 2_4:+52822000 None:intergenic
TGGAGTATGCATGGGGTTCT+AGG 0.317798 2_4:-52821673 Msa0334480:three_prime_UTR
AGGTTTCCAAGTTGTTCTAA+TGG 0.320920 2_4:-52822495 Msa0334480:CDS
TTAAGCTCGGCGAAAGTAAC+TGG 0.331652 2_4:+52822368 None:intergenic
AACCTCAAGAGCCCTGTTCT+TGG 0.335763 2_4:+52822874 None:intergenic
AAGGTGGTCTTGACTATTTA+GGG 0.341687 2_4:-52822559 Msa0334480:CDS
CTTTGTGCATGAACAAGGTT+TGG 0.349100 2_4:+52822533 None:intergenic
TTCCGCATCAACGGTCTTCC+TGG 0.355033 2_4:-52822458 Msa0334480:CDS
GGTTTCCAAGTTGTTCTAAT+GGG 0.357946 2_4:-52822494 Msa0334480:CDS
ACCCAGGCATTATTGGCAAC+AGG 0.364495 2_4:+52822230 None:intergenic
CTGAAGCATTTGCCAAGAAC+AGG 0.370065 2_4:-52822886 Msa0334480:CDS
CCCAAATATTTCACTCTGTC+TGG 0.371437 2_4:+52822995 None:intergenic
TGTCACTGGTAAAGGACCTT+TGG 0.380892 2_4:-52822279 Msa0334480:CDS
TTGATTTCAAAGAACCAGTT+TGG 0.381372 2_4:-52822610 Msa0334480:CDS
CAGACTCCTTCATACTTAAC+TGG 0.384985 2_4:-52822959 Msa0334480:CDS
GGAACAAACCATGGCATTGA+TGG 0.392716 2_4:-52823693 Msa0334480:exon
GGCCAATACTTTGACCCTCT+TGG 0.405341 2_4:-52822404 Msa0334480:CDS
CAAAGCATCTTAGCAGTACT+AGG 0.430115 2_4:-52822515 Msa0334480:CDS
CAAGCTATTGTCACTGGTAA+AGG 0.430252 2_4:-52822287 Msa0334480:CDS
CCAGACAGAGTGAAATATTT+GGG 0.431224 2_4:-52822995 Msa0334480:CDS
GATCCTGCTTTGAACCAAAC+TGG 0.431531 2_4:+52822596 None:intergenic
TGACTTCCTTGTTGGTTGGT+TGG 0.435541 2_4:+52822008 None:intergenic
GGAAATCAAGAATGGAAGAT+TGG 0.436306 2_4:-52822339 Msa0334480:CDS
TATGCCACCAAGTTTGTGCC+TGG 0.443893 2_4:-52822206 Msa0334480:CDS
GTTAAACAAACTCCTTTCCT+TGG 0.446741 2_4:-52823650 Msa0334480:CDS
TCAGTTATTTGAGTGAACTA+AGG 0.450678 2_4:-52823750 Msa0334480:five_prime_UTR
TGAAGGTGATCCATGGAAGA+TGG 0.451873 2_4:-52822691 Msa0334480:intron
TGGTCTAGTAGCGAGGAGTT+TGG 0.455939 2_4:-52821693 Msa0334480:three_prime_UTR
AAAAGAAGCACTTGAAAACT+TGG 0.458356 2_4:-52823714 Msa0334480:five_prime_UTR
TAATCGAACTACTTTACCGT+TGG 0.459868 2_4:-52821783 Msa0334480:three_prime_UTR
ACCCTGTTGCCAATAATGCC+TGG 0.466859 2_4:-52822232 Msa0334480:CDS
TTTGTTCAAGCTATTGTCAC+TGG 0.469594 2_4:-52822293 Msa0334480:CDS
GAAGGAGTCTGAGCTGAAAA+TGG 0.471279 2_4:+52822971 None:intergenic
GTTCTAATGGGTCTTGTCGA+AGG 0.474424 2_4:-52822482 Msa0334480:CDS
CCCTGTTGCCAATAATGCCT+GGG 0.476932 2_4:-52822231 Msa0334480:CDS
AATCGAACTACTTTACCGTT+GGG 0.488513 2_4:-52821782 Msa0334480:three_prime_UTR
GGGTCAAAGTATTGGCCACC+AGG 0.488607 2_4:+52822410 None:intergenic
GACCAAGAGGGTCAAAGTAT+TGG 0.490473 2_4:+52822402 None:intergenic
TCCTTTCCTTGGTCAAAGGA+AGG 0.490595 2_4:-52823639 Msa0334480:CDS
TATATGACTTCCTTGTTGGT+TGG 0.496487 2_4:+52822004 None:intergenic
AGTATTGGCCACCAGGGTAA+AGG 0.501836 2_4:+52822417 None:intergenic
GATTTCCTTCACTTTAAGCT+CGG 0.504343 2_4:+52822355 None:intergenic
TTCTAATGGGTCTTGTCGAA+GGG 0.505605 2_4:-52822481 Msa0334480:CDS
CGAGGAGTTTGGAGTATGCA+TGG 0.508926 2_4:-52821682 Msa0334480:three_prime_UTR
TTTGTGCATGAACAAGGTTT+GGG 0.509110 2_4:+52822534 None:intergenic
CAAGACCCATTAGAACAACT+TGG 0.511234 2_4:+52822489 None:intergenic
AAACTCCTTTCCTTGGTCAA+AGG 0.511273 2_4:-52823643 Msa0334480:CDS
GTATGCAAAGCCGCTAGGAT+TGG 0.511784 2_4:-52821713 Msa0334480:three_prime_UTR
CAGCACCCTTCCTTTGACCA+AGG 0.515079 2_4:+52823633 None:intergenic
TGCCAAGAACAGGGCTCTTG+AGG 0.515098 2_4:-52822876 Msa0334480:intron
TCTTAGAGATGTTGTTGCCA+TGG 0.518254 2_4:-52823603 Msa0334480:CDS
CTTAGAGATGTTGTTGCCAT+GGG 0.518383 2_4:-52823602 Msa0334480:CDS
TTAAGAACCAGGCACAAACT+TGG 0.519988 2_4:+52822199 None:intergenic
CTAGCATAGCCCATCTTCCA+TGG 0.521302 2_4:+52822681 None:intergenic
GTCGAAGGGTTCCGCATCAA+CGG 0.526007 2_4:-52822467 Msa0334480:CDS
TATCTATGATTGCCTTTGTG+TGG 0.526299 2_4:-52822166 Msa0334480:three_prime_UTR
AATTCCCTGGTGATTATGGA+TGG 0.526464 2_4:-52822934 Msa0334480:CDS
GAACCAGTTTGGTTCAAAGC+AGG 0.531298 2_4:-52822599 Msa0334480:CDS
ATGGCAACAACATCTCTAAG+AGG 0.533136 2_4:+52823605 None:intergenic
TACTTAACTGGAGAATTCCC+TGG 0.533200 2_4:-52822947 Msa0334480:CDS
GAAGGTGATCCATGGAAGAT+GGG 0.534211 2_4:-52822690 Msa0334480:intron
TTGTTGCCCTCTCCGACACC+AGG 0.535866 2_4:+52822440 None:intergenic
CACAAATAGTATTTATGCAA+TGG 0.536762 2_4:+52821952 None:intergenic
TTTCGCCGAGCTTAAAGTGA+AGG 0.543825 2_4:-52822360 Msa0334480:CDS
GAGGAGTTTGGAGTATGCAT+GGG 0.544157 2_4:-52821681 Msa0334480:three_prime_UTR
AAAGTGAAGGAAATCAAGAA+TGG 0.545234 2_4:-52822347 Msa0334480:CDS
GGTCTTCCTGGTGTCGGAGA+GGG 0.548663 2_4:-52822446 Msa0334480:CDS
GCTTGCTGCCATCAATGCCA+TGG 0.549204 2_4:+52823685 None:intergenic
AGATGCTTTGTGCATGAACA+AGG 0.550454 2_4:+52822528 None:intergenic
CATGGAAGATGGGCTATGCT+AGG 0.554415 2_4:-52822680 Msa0334480:CDS
AACATTGATGTTTAAGAACC+AGG 0.556979 2_4:+52822188 None:intergenic
AATTCTCCAGTTAAGTATGA+AGG 0.558241 2_4:+52822953 None:intergenic
GATTATGGATGGGATACTGC+TGG 0.560987 2_4:-52822923 Msa0334480:CDS
AACAACATCTCTAAGAGGGT+TGG 0.564355 2_4:+52823610 None:intergenic
CCTTTCCTTGGTCAAAGGAA+GGG 0.568157 2_4:-52823638 Msa0334480:CDS
TGGGCTATGCTAGGAGCACT+CGG 0.571623 2_4:-52822671 Msa0334480:CDS
CGGTCTTCCTGGTGTCGGAG+AGG 0.575168 2_4:-52822447 Msa0334480:CDS
ATCAACGGTCTTCCTGGTGT+CGG 0.580505 2_4:-52822452 Msa0334480:CDS
GTATCCCATCCATAATCACC+AGG 0.582530 2_4:+52822929 None:intergenic
CCCAGGCATTATTGGCAACA+GGG 0.587322 2_4:+52822231 None:intergenic
GGTGAATCTTGAGGTTCCCA+TGG 0.592525 2_4:+52823586 None:intergenic
TGAAAACTTGGAACAAACCA+TGG 0.600056 2_4:-52823702 Msa0334480:exon
AAATACCATGGTGAATCTTG+AGG 0.601532 2_4:+52823577 None:intergenic
AAGGGAAATGAATTGTGGTA+TGG 0.602138 2_4:-52823019 Msa0334480:CDS
AGAACCAGGCACAAACTTGG+TGG 0.606113 2_4:+52822202 None:intergenic
ATTCCCTGGTGATTATGGAT+GGG 0.608330 2_4:-52822933 Msa0334480:CDS
CCCTTCCTTTGACCAAGGAA+AGG 0.609595 2_4:+52823638 None:intergenic
GGATCGCAAATCTTCTCAGA+AGG 0.611974 2_4:-52822578 Msa0334480:CDS
CACCAGGAAGACCGTTGATG+CGG 0.612040 2_4:+52822456 None:intergenic
AGAGTGTATGCAAAGCCGCT+AGG 0.615793 2_4:-52821718 Msa0334480:three_prime_UTR
TCGCAAATCTTCTCAGAAGG+TGG 0.619983 2_4:-52822575 Msa0334480:CDS
GTAATTGTCATAACACCCAA+CGG 0.622376 2_4:+52821767 None:intergenic
TGAAGCATTTGCCAAGAACA+GGG 0.626505 2_4:-52822885 Msa0334480:CDS
TGGCAACAACATCTCTAAGA+GGG 0.630677 2_4:+52823606 None:intergenic
TTGTGAAGGGAAATGAATTG+TGG 0.635151 2_4:-52823024 Msa0334480:intron
TTTAAACCAACCAACCAACA+AGG 0.640572 2_4:-52822014 Msa0334480:three_prime_UTR
GGCGAAAGTAACTGGATCGT+CGG 0.650985 2_4:+52822376 None:intergenic
GGATCGTCGGCTAGACCAAG+AGG 0.652317 2_4:+52822389 None:intergenic
GGTCAAAGTATTGGCCACCA+GGG 0.653321 2_4:+52822411 None:intergenic
TGATCCAAAAGATTCTCCAA+AGG 0.654984 2_4:+52822263 None:intergenic
AGGAGTTTGGAGTATGCATG+GGG 0.658617 2_4:-52821680 Msa0334480:three_prime_UTR
AAACTTGGTGGCATAAACCC+AGG 0.664430 2_4:+52822214 None:intergenic
TCTAATCATCATCCACACAA+AGG 0.671776 2_4:+52822154 None:intergenic
CTAGGATTGGTCTAGTAGCG+AGG 0.674495 2_4:-52821700 Msa0334480:three_prime_UTR
GAGGGCAACAACCTTTACCC+TGG 0.674842 2_4:-52822428 Msa0334480:CDS
GATCGTCGGCTAGACCAAGA+GGG 0.686043 2_4:+52822390 None:intergenic
GGCAACAACCTTTACCCTGG+TGG 0.691666 2_4:-52822425 Msa0334480:CDS
TAACTGATACTAGAAATGTG+TGG 0.703886 2_4:+52823766 None:intergenic
GTGTGGATGATGATTAGACA+TGG 0.706158 2_4:-52822149 Msa0334480:three_prime_UTR
CGCTACTAGACCAATCCTAG+CGG 0.715987 2_4:+52821703 None:intergenic
GGGAACCTCAAGATTCACCA+TGG 0.716738 2_4:-52823582 Msa0334480:intron
TATCCCATCCATAATCACCA+GGG 0.728458 2_4:+52822930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGAAAAAAACATAAGAA+TGG + chr2_4:52822629-52822648 None:intergenic 15.0%
!!! TAGAATGTTAACAAAATTTT+TGG + chr2_4:52822663-52822682 None:intergenic 15.0%
!! ACATAACTTAATATCTTTAT+CGG + chr2_4:52822713-52822732 None:intergenic 15.0%
!! ATTATGATCTTAATGATTAT+TGG - chr2_4:52823318-52823337 Msa0334480:intron 15.0%
!! TTTAGAAAAAAACATAAGAA+TGG + chr2_4:52822629-52822648 None:intergenic 15.0%
!!! TAGAATGTTAACAAAATTTT+TGG + chr2_4:52822663-52822682 None:intergenic 15.0%
!! ACATAACTTAATATCTTTAT+CGG + chr2_4:52822713-52822732 None:intergenic 15.0%
!! ATTATGATCTTAATGATTAT+TGG - chr2_4:52823318-52823337 Msa0334480:intron 15.0%
!!! AGCATAGTGAAATTTTTATA+GGG + chr2_4:52821888-52821907 None:intergenic 20.0%
!!! TAGCATAGTGAAATTTTTAT+AGG + chr2_4:52821889-52821908 None:intergenic 20.0%
!!! ACAAGTATGTTTTTTATTGT+TGG - chr2_4:52822052-52822071 Msa0334480:three_prime_UTR 20.0%
!!! TAAGTTATGTTGAATTTTGA+AGG - chr2_4:52822723-52822742 Msa0334480:intron 20.0%
!!! ACTAATGTTCATTTTAAAGA+TGG - chr2_4:52823370-52823389 Msa0334480:intron 20.0%
!!! AGCATAGTGAAATTTTTATA+GGG + chr2_4:52821888-52821907 None:intergenic 20.0%
!!! TAGCATAGTGAAATTTTTAT+AGG + chr2_4:52821889-52821908 None:intergenic 20.0%
!!! ACAAGTATGTTTTTTATTGT+TGG - chr2_4:52822052-52822071 Msa0334480:three_prime_UTR 20.0%
!!! TAAGTTATGTTGAATTTTGA+AGG - chr2_4:52822723-52822742 Msa0334480:intron 20.0%
!!! ACTAATGTTCATTTTAAAGA+TGG - chr2_4:52823370-52823389 Msa0334480:intron 20.0%
!! GAAATTTTTATAGGGAAAAG+AGG + chr2_4:52821880-52821899 None:intergenic 25.0%
! CACTATGCTAACATATTTAT+AGG - chr2_4:52821899-52821918 Msa0334480:three_prime_UTR 25.0%
! ATAAAAAACATACTTGTGCA+TGG + chr2_4:52822049-52822068 None:intergenic 25.0%
! CTAACAAAAGATATGCTTTA+TGG + chr2_4:52822169-52822188 None:intergenic 25.0%
! TAAATAATGAAAGACACGTT+CGG - chr2_4:52822239-52822258 Msa0334480:CDS 25.0%
!!! TTTTGGAGCATTTTTAAACA+TGG + chr2_4:52822588-52822607 None:intergenic 25.0%
!!! TGGATTAGTATATCTGTTTT+TGG - chr2_4:52823338-52823357 Msa0334480:intron 25.0%
!!! ATATCTGTTTTTGGTTCTTA+CGG - chr2_4:52823347-52823366 Msa0334480:intron 25.0%
! TATTTATATGACTTCCTTGT+TGG + chr2_4:52823434-52823453 None:intergenic 25.0%
! CACAAATAGTATTTATGCAA+TGG + chr2_4:52823482-52823501 None:intergenic 25.0%
!! GAAATTTTTATAGGGAAAAG+AGG + chr2_4:52821880-52821899 None:intergenic 25.0%
! CACTATGCTAACATATTTAT+AGG - chr2_4:52821899-52821918 Msa0334480:three_prime_UTR 25.0%
! ATAAAAAACATACTTGTGCA+TGG + chr2_4:52822049-52822068 None:intergenic 25.0%
! CTAACAAAAGATATGCTTTA+TGG + chr2_4:52822169-52822188 None:intergenic 25.0%
! TAAATAATGAAAGACACGTT+CGG - chr2_4:52822239-52822258 Msa0334480:CDS 25.0%
!!! TTTTGGAGCATTTTTAAACA+TGG + chr2_4:52822588-52822607 None:intergenic 25.0%
!!! TGGATTAGTATATCTGTTTT+TGG - chr2_4:52823338-52823357 Msa0334480:intron 25.0%
!!! ATATCTGTTTTTGGTTCTTA+CGG - chr2_4:52823347-52823366 Msa0334480:intron 25.0%
! TATTTATATGACTTCCTTGT+TGG + chr2_4:52823434-52823453 None:intergenic 25.0%
! CACAAATAGTATTTATGCAA+TGG + chr2_4:52823482-52823501 None:intergenic 25.0%
TCAGTTATTTGAGTGAACTA+AGG - chr2_4:52821681-52821700 Msa0334480:three_prime_UTR 30.0%
!! AAAAGAAGCACTTGAAAACT+TGG - chr2_4:52821717-52821736 Msa0334480:three_prime_UTR 30.0%
TCAGTCACATCACATATTTA+AGG + chr2_4:52821943-52821962 None:intergenic 30.0%
!!! TATAAGTTGGTTTTTGCGAT+TGG + chr2_4:52822111-52822130 None:intergenic 30.0%
ATCTTGCATCATGTATAAGT+TGG + chr2_4:52822124-52822143 None:intergenic 30.0%
!! GTTATAAAGTGTTGCTTATG+TGG - chr2_4:52822360-52822379 Msa0334480:CDS 30.0%
ATTGTGTTTGTGATTGTGAA+GGG - chr2_4:52822394-52822413 Msa0334480:CDS 30.0%
AATTCTCCAGTTAAGTATGA+AGG + chr2_4:52822481-52822500 None:intergenic 30.0%
TTAAAAATGCTCCAAAACCA+TGG - chr2_4:52822591-52822610 Msa0334480:CDS 30.0%
! ATGAGAAAAAACCATGGTTT+TGG + chr2_4:52822605-52822624 None:intergenic 30.0%
AATGGAATGAGAAAAAACCA+TGG + chr2_4:52822611-52822630 None:intergenic 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG - chr2_4:52822792-52822811 Msa0334480:intron 30.0%
TTGATTTCAAAGAACCAGTT+TGG - chr2_4:52822821-52822840 Msa0334480:intron 30.0%
AAAGTGAAGGAAATCAAGAA+TGG - chr2_4:52823084-52823103 Msa0334480:intron 30.0%
AACATTGATGTTTAAGAACC+AGG + chr2_4:52823246-52823265 None:intergenic 30.0%
TCAGTTATTTGAGTGAACTA+AGG - chr2_4:52821681-52821700 Msa0334480:three_prime_UTR 30.0%
!! AAAAGAAGCACTTGAAAACT+TGG - chr2_4:52821717-52821736 Msa0334480:three_prime_UTR 30.0%
TCAGTCACATCACATATTTA+AGG + chr2_4:52821943-52821962 None:intergenic 30.0%
!!! TATAAGTTGGTTTTTGCGAT+TGG + chr2_4:52822111-52822130 None:intergenic 30.0%
ATCTTGCATCATGTATAAGT+TGG + chr2_4:52822124-52822143 None:intergenic 30.0%
!! GTTATAAAGTGTTGCTTATG+TGG - chr2_4:52822360-52822379 Msa0334480:CDS 30.0%
ATTGTGTTTGTGATTGTGAA+GGG - chr2_4:52822394-52822413 Msa0334480:CDS 30.0%
AATTCTCCAGTTAAGTATGA+AGG + chr2_4:52822481-52822500 None:intergenic 30.0%
TTAAAAATGCTCCAAAACCA+TGG - chr2_4:52822591-52822610 Msa0334480:CDS 30.0%
! ATGAGAAAAAACCATGGTTT+TGG + chr2_4:52822605-52822624 None:intergenic 30.0%
AATGGAATGAGAAAAAACCA+TGG + chr2_4:52822611-52822630 None:intergenic 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG - chr2_4:52822792-52822811 Msa0334480:intron 30.0%
TTGATTTCAAAGAACCAGTT+TGG - chr2_4:52822821-52822840 Msa0334480:intron 30.0%
AAAGTGAAGGAAATCAAGAA+TGG - chr2_4:52823084-52823103 Msa0334480:intron 30.0%
AACATTGATGTTTAAGAACC+AGG + chr2_4:52823246-52823265 None:intergenic 30.0%
TGAAAACTTGGAACAAACCA+TGG - chr2_4:52821729-52821748 Msa0334480:three_prime_UTR 35.0%
GTTAAACAAACTCCTTTCCT+TGG - chr2_4:52821781-52821800 Msa0334480:three_prime_UTR 35.0%
AAATACCATGGTGAATCTTG+AGG + chr2_4:52821857-52821876 None:intergenic 35.0%
CATTGTGTTTGTGATTGTGA+AGG - chr2_4:52822393-52822412 Msa0334480:CDS 35.0%
TTGTGAAGGGAAATGAATTG+TGG - chr2_4:52822407-52822426 Msa0334480:CDS 35.0%
AAGGGAAATGAATTGTGGTA+TGG - chr2_4:52822412-52822431 Msa0334480:CDS 35.0%
ACCAGACAGAGTGAAATATT+TGG - chr2_4:52822435-52822454 Msa0334480:CDS 35.0%
CCAGACAGAGTGAAATATTT+GGG - chr2_4:52822436-52822455 Msa0334480:CDS 35.0%
!! TGAATTTTGAAGGTGATCCA+TGG - chr2_4:52822733-52822752 Msa0334480:intron 35.0%
! CACCTGAAGTACTTGAAAAA+TGG - chr2_4:52822791-52822810 Msa0334480:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG + chr2_4:52822796-52822815 None:intergenic 35.0%
! AAGGTGGTCTTGACTATTTA+GGG - chr2_4:52822872-52822891 Msa0334480:intron 35.0%
TTTGTGCATGAACAAGGTTT+GGG + chr2_4:52822900-52822919 None:intergenic 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG - chr2_4:52822936-52822955 Msa0334480:CDS 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG - chr2_4:52822937-52822956 Msa0334480:CDS 35.0%
GATTTCCTTCACTTTAAGCT+CGG + chr2_4:52823079-52823098 None:intergenic 35.0%
GGAAATCAAGAATGGAAGAT+TGG - chr2_4:52823092-52823111 Msa0334480:intron 35.0%
! TTGGCTATGTTTTCGATGTT+TGG - chr2_4:52823111-52823130 Msa0334480:intron 35.0%
TTTGTTCAAGCTATTGTCAC+TGG - chr2_4:52823138-52823157 Msa0334480:intron 35.0%
TGATCCAAAAGATTCTCCAA+AGG + chr2_4:52823171-52823190 None:intergenic 35.0%
TATCTATGATTGCCTTTGTG+TGG - chr2_4:52823265-52823284 Msa0334480:intron 35.0%
TCTAATCATCATCCACACAA+AGG + chr2_4:52823280-52823299 None:intergenic 35.0%
TTTAAACCAACCAACCAACA+AGG - chr2_4:52823417-52823436 Msa0334480:intron 35.0%
TATATGACTTCCTTGTTGGT+TGG + chr2_4:52823430-52823449 None:intergenic 35.0%
! GTTCTTTGTGTGCTGTTATA+GGG + chr2_4:52823536-52823555 None:intergenic 35.0%
! AGTTCTTTGTGTGCTGTTAT+AGG + chr2_4:52823537-52823556 None:intergenic 35.0%
TAATCGAACTACTTTACCGT+TGG - chr2_4:52823648-52823667 Msa0334480:CDS 35.0%
AATCGAACTACTTTACCGTT+GGG - chr2_4:52823649-52823668 Msa0334480:CDS 35.0%
GTAATTGTCATAACACCCAA+CGG + chr2_4:52823667-52823686 None:intergenic 35.0%
TGAAAACTTGGAACAAACCA+TGG - chr2_4:52821729-52821748 Msa0334480:three_prime_UTR 35.0%
GTTAAACAAACTCCTTTCCT+TGG - chr2_4:52821781-52821800 Msa0334480:three_prime_UTR 35.0%
AAATACCATGGTGAATCTTG+AGG + chr2_4:52821857-52821876 None:intergenic 35.0%
CATTGTGTTTGTGATTGTGA+AGG - chr2_4:52822393-52822412 Msa0334480:CDS 35.0%
TTGTGAAGGGAAATGAATTG+TGG - chr2_4:52822407-52822426 Msa0334480:CDS 35.0%
AAGGGAAATGAATTGTGGTA+TGG - chr2_4:52822412-52822431 Msa0334480:CDS 35.0%
ACCAGACAGAGTGAAATATT+TGG - chr2_4:52822435-52822454 Msa0334480:CDS 35.0%
CCAGACAGAGTGAAATATTT+GGG - chr2_4:52822436-52822455 Msa0334480:CDS 35.0%
!! TGAATTTTGAAGGTGATCCA+TGG - chr2_4:52822733-52822752 Msa0334480:intron 35.0%
! CACCTGAAGTACTTGAAAAA+TGG - chr2_4:52822791-52822810 Msa0334480:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG + chr2_4:52822796-52822815 None:intergenic 35.0%
! AAGGTGGTCTTGACTATTTA+GGG - chr2_4:52822872-52822891 Msa0334480:intron 35.0%
TTTGTGCATGAACAAGGTTT+GGG + chr2_4:52822900-52822919 None:intergenic 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG - chr2_4:52822936-52822955 Msa0334480:CDS 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG - chr2_4:52822937-52822956 Msa0334480:CDS 35.0%
GATTTCCTTCACTTTAAGCT+CGG + chr2_4:52823079-52823098 None:intergenic 35.0%
GGAAATCAAGAATGGAAGAT+TGG - chr2_4:52823092-52823111 Msa0334480:intron 35.0%
! TTGGCTATGTTTTCGATGTT+TGG - chr2_4:52823111-52823130 Msa0334480:intron 35.0%
TTTGTTCAAGCTATTGTCAC+TGG - chr2_4:52823138-52823157 Msa0334480:intron 35.0%
TGATCCAAAAGATTCTCCAA+AGG + chr2_4:52823171-52823190 None:intergenic 35.0%
TATCTATGATTGCCTTTGTG+TGG - chr2_4:52823265-52823284 Msa0334480:intron 35.0%
TCTAATCATCATCCACACAA+AGG + chr2_4:52823280-52823299 None:intergenic 35.0%
TTTAAACCAACCAACCAACA+AGG - chr2_4:52823417-52823436 Msa0334480:intron 35.0%
TATATGACTTCCTTGTTGGT+TGG + chr2_4:52823430-52823449 None:intergenic 35.0%
! GTTCTTTGTGTGCTGTTATA+GGG + chr2_4:52823536-52823555 None:intergenic 35.0%
! AGTTCTTTGTGTGCTGTTAT+AGG + chr2_4:52823537-52823556 None:intergenic 35.0%
TAATCGAACTACTTTACCGT+TGG - chr2_4:52823648-52823667 Msa0334480:CDS 35.0%
AATCGAACTACTTTACCGTT+GGG - chr2_4:52823649-52823668 Msa0334480:CDS 35.0%
GTAATTGTCATAACACCCAA+CGG + chr2_4:52823667-52823686 None:intergenic 35.0%
AAACTCCTTTCCTTGGTCAA+AGG - chr2_4:52821788-52821807 Msa0334480:three_prime_UTR 40.0%
! AACAACATCTCTAAGAGGGT+TGG + chr2_4:52821824-52821843 None:intergenic 40.0%
! TGGCAACAACATCTCTAAGA+GGG + chr2_4:52821828-52821847 None:intergenic 40.0%
ATGGCAACAACATCTCTAAG+AGG + chr2_4:52821829-52821848 None:intergenic 40.0%
TCTTAGAGATGTTGTTGCCA+TGG - chr2_4:52821828-52821847 Msa0334480:three_prime_UTR 40.0%
CTTAGAGATGTTGTTGCCAT+GGG - chr2_4:52821829-52821848 Msa0334480:three_prime_UTR 40.0%
AGGGAAAAGAGGAAATACCA+TGG + chr2_4:52821869-52821888 None:intergenic 40.0%
ATGCTTTATGGCCTACTCTA+TGG + chr2_4:52822157-52822176 None:intergenic 40.0%
CCCAAATATTTCACTCTGTC+TGG + chr2_4:52822439-52822458 None:intergenic 40.0%
CAGACTCCTTCATACTTAAC+TGG - chr2_4:52822472-52822491 Msa0334480:CDS 40.0%
TACTTAACTGGAGAATTCCC+TGG - chr2_4:52822484-52822503 Msa0334480:CDS 40.0%
AATTCCCTGGTGATTATGGA+TGG - chr2_4:52822497-52822516 Msa0334480:CDS 40.0%
ATTCCCTGGTGATTATGGAT+GGG - chr2_4:52822498-52822517 Msa0334480:CDS 40.0%
TATCCCATCCATAATCACCA+GGG + chr2_4:52822504-52822523 None:intergenic 40.0%
! TGAAGCATTTGCCAAGAACA+GGG - chr2_4:52822546-52822565 Msa0334480:CDS 40.0%
! GAAGGTGGTCTTGACTATTT+AGG - chr2_4:52822871-52822890 Msa0334480:intron 40.0%
CTTTGTGCATGAACAAGGTT+TGG + chr2_4:52822901-52822920 None:intergenic 40.0%
AGATGCTTTGTGCATGAACA+AGG + chr2_4:52822906-52822925 None:intergenic 40.0%
! CAAAGCATCTTAGCAGTACT+AGG - chr2_4:52822916-52822935 Msa0334480:CDS 40.0%
CAAGACCCATTAGAACAACT+TGG + chr2_4:52822945-52822964 None:intergenic 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG - chr2_4:52822950-52822969 Msa0334480:CDS 40.0%
CAAGCTATTGTCACTGGTAA+AGG - chr2_4:52823144-52823163 Msa0334480:intron 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG - chr2_4:52823164-52823183 Msa0334480:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG + chr2_4:52823235-52823254 None:intergenic 40.0%
GTGTGGATGATGATTAGACA+TGG - chr2_4:52823282-52823301 Msa0334480:intron 40.0%
AAACTCCTTTCCTTGGTCAA+AGG - chr2_4:52821788-52821807 Msa0334480:three_prime_UTR 40.0%
! AACAACATCTCTAAGAGGGT+TGG + chr2_4:52821824-52821843 None:intergenic 40.0%
! TGGCAACAACATCTCTAAGA+GGG + chr2_4:52821828-52821847 None:intergenic 40.0%
ATGGCAACAACATCTCTAAG+AGG + chr2_4:52821829-52821848 None:intergenic 40.0%
TCTTAGAGATGTTGTTGCCA+TGG - chr2_4:52821828-52821847 Msa0334480:three_prime_UTR 40.0%
CTTAGAGATGTTGTTGCCAT+GGG - chr2_4:52821829-52821848 Msa0334480:three_prime_UTR 40.0%
AGGGAAAAGAGGAAATACCA+TGG + chr2_4:52821869-52821888 None:intergenic 40.0%
ATGCTTTATGGCCTACTCTA+TGG + chr2_4:52822157-52822176 None:intergenic 40.0%
CCCAAATATTTCACTCTGTC+TGG + chr2_4:52822439-52822458 None:intergenic 40.0%
CAGACTCCTTCATACTTAAC+TGG - chr2_4:52822472-52822491 Msa0334480:CDS 40.0%
TACTTAACTGGAGAATTCCC+TGG - chr2_4:52822484-52822503 Msa0334480:CDS 40.0%
AATTCCCTGGTGATTATGGA+TGG - chr2_4:52822497-52822516 Msa0334480:CDS 40.0%
ATTCCCTGGTGATTATGGAT+GGG - chr2_4:52822498-52822517 Msa0334480:CDS 40.0%
TATCCCATCCATAATCACCA+GGG + chr2_4:52822504-52822523 None:intergenic 40.0%
! TGAAGCATTTGCCAAGAACA+GGG - chr2_4:52822546-52822565 Msa0334480:CDS 40.0%
! GAAGGTGGTCTTGACTATTT+AGG - chr2_4:52822871-52822890 Msa0334480:intron 40.0%
CTTTGTGCATGAACAAGGTT+TGG + chr2_4:52822901-52822920 None:intergenic 40.0%
AGATGCTTTGTGCATGAACA+AGG + chr2_4:52822906-52822925 None:intergenic 40.0%
! CAAAGCATCTTAGCAGTACT+AGG - chr2_4:52822916-52822935 Msa0334480:CDS 40.0%
CAAGACCCATTAGAACAACT+TGG + chr2_4:52822945-52822964 None:intergenic 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG - chr2_4:52822950-52822969 Msa0334480:CDS 40.0%
CAAGCTATTGTCACTGGTAA+AGG - chr2_4:52823144-52823163 Msa0334480:intron 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG - chr2_4:52823164-52823183 Msa0334480:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG + chr2_4:52823235-52823254 None:intergenic 40.0%
GTGTGGATGATGATTAGACA+TGG - chr2_4:52823282-52823301 Msa0334480:intron 40.0%
! GGAACAAACCATGGCATTGA+TGG - chr2_4:52821738-52821757 Msa0334480:three_prime_UTR 45.0%
TCCTTTCCTTGGTCAAAGGA+AGG - chr2_4:52821792-52821811 Msa0334480:three_prime_UTR 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG - chr2_4:52821793-52821812 Msa0334480:three_prime_UTR 45.0%
TTTGTCTCGCACCATAGAGT+AGG - chr2_4:52822143-52822162 Msa0334480:three_prime_UTR 45.0%
! AATGAAAGACACGTTCGGTG+AGG - chr2_4:52822244-52822263 Msa0334480:CDS 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG + chr2_4:52822463-52822482 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG - chr2_4:52822493-52822512 Msa0334480:CDS 45.0%
GTATCCCATCCATAATCACC+AGG + chr2_4:52822505-52822524 None:intergenic 45.0%
GATTATGGATGGGATACTGC+TGG - chr2_4:52822508-52822527 Msa0334480:CDS 45.0%
CTGTTCTTGGCAAATGCTTC+AGG + chr2_4:52822547-52822566 None:intergenic 45.0%
! CTGAAGCATTTGCCAAGAAC+AGG - chr2_4:52822545-52822564 Msa0334480:CDS 45.0%
TGAAGGTGATCCATGGAAGA+TGG - chr2_4:52822740-52822759 Msa0334480:intron 45.0%
GAAGGTGATCCATGGAAGAT+GGG - chr2_4:52822741-52822760 Msa0334480:intron 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG - chr2_4:52822832-52822851 Msa0334480:intron 45.0%
! GATCCTGCTTTGAACCAAAC+TGG + chr2_4:52822838-52822857 None:intergenic 45.0%
GGATCGCAAATCTTCTCAGA+AGG - chr2_4:52822853-52822872 Msa0334480:intron 45.0%
TCGCAAATCTTCTCAGAAGG+TGG - chr2_4:52822856-52822875 Msa0334480:intron 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG - chr2_4:52822949-52822968 Msa0334480:CDS 45.0%
GACCAAGAGGGTCAAAGTAT+TGG + chr2_4:52823032-52823051 None:intergenic 45.0%
TTAAGCTCGGCGAAAGTAAC+TGG + chr2_4:52823066-52823085 None:intergenic 45.0%
TTTCGCCGAGCTTAAAGTGA+AGG - chr2_4:52823071-52823090 Msa0334480:intron 45.0%
TGTCACTGGTAAAGGACCTT+TGG - chr2_4:52823152-52823171 Msa0334480:intron 45.0%
GGCATAAACCCAGGCATTAT+TGG + chr2_4:52823211-52823230 None:intergenic 45.0%
! AAACTTGGTGGCATAAACCC+AGG + chr2_4:52823220-52823239 None:intergenic 45.0%
! TGACTTCCTTGTTGGTTGGT+TGG + chr2_4:52823426-52823445 None:intergenic 45.0%
! GAGGAGTTTGGAGTATGCAT+GGG - chr2_4:52823750-52823769 Msa0334480:five_prime_UTR 45.0%
! AGGAGTTTGGAGTATGCATG+GGG - chr2_4:52823751-52823770 Msa0334480:five_prime_UTR 45.0%
! GGAACAAACCATGGCATTGA+TGG - chr2_4:52821738-52821757 Msa0334480:three_prime_UTR 45.0%
TCCTTTCCTTGGTCAAAGGA+AGG - chr2_4:52821792-52821811 Msa0334480:three_prime_UTR 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG - chr2_4:52821793-52821812 Msa0334480:three_prime_UTR 45.0%
TTTGTCTCGCACCATAGAGT+AGG - chr2_4:52822143-52822162 Msa0334480:three_prime_UTR 45.0%
! AATGAAAGACACGTTCGGTG+AGG - chr2_4:52822244-52822263 Msa0334480:CDS 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG + chr2_4:52822463-52822482 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG - chr2_4:52822493-52822512 Msa0334480:CDS 45.0%
GTATCCCATCCATAATCACC+AGG + chr2_4:52822505-52822524 None:intergenic 45.0%
GATTATGGATGGGATACTGC+TGG - chr2_4:52822508-52822527 Msa0334480:CDS 45.0%
CTGTTCTTGGCAAATGCTTC+AGG + chr2_4:52822547-52822566 None:intergenic 45.0%
! CTGAAGCATTTGCCAAGAAC+AGG - chr2_4:52822545-52822564 Msa0334480:CDS 45.0%
TGAAGGTGATCCATGGAAGA+TGG - chr2_4:52822740-52822759 Msa0334480:intron 45.0%
GAAGGTGATCCATGGAAGAT+GGG - chr2_4:52822741-52822760 Msa0334480:intron 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG - chr2_4:52822832-52822851 Msa0334480:intron 45.0%
! GATCCTGCTTTGAACCAAAC+TGG + chr2_4:52822838-52822857 None:intergenic 45.0%
GGATCGCAAATCTTCTCAGA+AGG - chr2_4:52822853-52822872 Msa0334480:intron 45.0%
TCGCAAATCTTCTCAGAAGG+TGG - chr2_4:52822856-52822875 Msa0334480:intron 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG - chr2_4:52822949-52822968 Msa0334480:CDS 45.0%
GACCAAGAGGGTCAAAGTAT+TGG + chr2_4:52823032-52823051 None:intergenic 45.0%
TTAAGCTCGGCGAAAGTAAC+TGG + chr2_4:52823066-52823085 None:intergenic 45.0%
TTTCGCCGAGCTTAAAGTGA+AGG - chr2_4:52823071-52823090 Msa0334480:intron 45.0%
TGTCACTGGTAAAGGACCTT+TGG - chr2_4:52823152-52823171 Msa0334480:intron 45.0%
GGCATAAACCCAGGCATTAT+TGG + chr2_4:52823211-52823230 None:intergenic 45.0%
! AAACTTGGTGGCATAAACCC+AGG + chr2_4:52823220-52823239 None:intergenic 45.0%
! TGACTTCCTTGTTGGTTGGT+TGG + chr2_4:52823426-52823445 None:intergenic 45.0%
! GAGGAGTTTGGAGTATGCAT+GGG - chr2_4:52823750-52823769 Msa0334480:five_prime_UTR 45.0%
! AGGAGTTTGGAGTATGCATG+GGG - chr2_4:52823751-52823770 Msa0334480:five_prime_UTR 45.0%
CCCTTCCTTTGACCAAGGAA+AGG + chr2_4:52821796-52821815 None:intergenic 50.0%
GGTGAATCTTGAGGTTCCCA+TGG + chr2_4:52821848-52821867 None:intergenic 50.0%
GGGAACCTCAAGATTCACCA+TGG - chr2_4:52821849-52821868 Msa0334480:three_prime_UTR 50.0%
AACCTCAAGAGCCCTGTTCT+TGG + chr2_4:52822560-52822579 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG + chr2_4:52822753-52822772 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG - chr2_4:52822751-52822770 Msa0334480:intron 50.0%
ATCAACGGTCTTCCTGGTGT+CGG - chr2_4:52822979-52822998 Msa0334480:CDS 50.0%
!! AGTATTGGCCACCAGGGTAA+AGG + chr2_4:52823017-52823036 None:intergenic 50.0%
!! GGTCAAAGTATTGGCCACCA+GGG + chr2_4:52823023-52823042 None:intergenic 50.0%
GGCCAATACTTTGACCCTCT+TGG - chr2_4:52823027-52823046 Msa0334480:intron 50.0%
GGCGAAAGTAACTGGATCGT+CGG + chr2_4:52823058-52823077 None:intergenic 50.0%
ACCCTGTTGCCAATAATGCC+TGG - chr2_4:52823199-52823218 Msa0334480:intron 50.0%
CCCAGGCATTATTGGCAACA+GGG + chr2_4:52823203-52823222 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG - chr2_4:52823200-52823219 Msa0334480:intron 50.0%
ACCCAGGCATTATTGGCAAC+AGG + chr2_4:52823204-52823223 None:intergenic 50.0%
TATGCCACCAAGTTTGTGCC+TGG - chr2_4:52823225-52823244 Msa0334480:intron 50.0%
AGAACCAGGCACAAACTTGG+TGG + chr2_4:52823232-52823251 None:intergenic 50.0%
AGAGTGTATGCAAAGCCGCT+AGG - chr2_4:52823713-52823732 Msa0334480:five_prime_UTR 50.0%
GTATGCAAAGCCGCTAGGAT+TGG - chr2_4:52823718-52823737 Msa0334480:five_prime_UTR 50.0%
CGCTACTAGACCAATCCTAG+CGG + chr2_4:52823731-52823750 None:intergenic 50.0%
!! CTAGGATTGGTCTAGTAGCG+AGG - chr2_4:52823731-52823750 Msa0334480:five_prime_UTR 50.0%
TGGTCTAGTAGCGAGGAGTT+TGG - chr2_4:52823738-52823757 Msa0334480:five_prime_UTR 50.0%
! CGAGGAGTTTGGAGTATGCA+TGG - chr2_4:52823749-52823768 Msa0334480:five_prime_UTR 50.0%
TGGAGTATGCATGGGGTTCT+AGG - chr2_4:52823758-52823777 Msa0334480:five_prime_UTR 50.0%
CCCTTCCTTTGACCAAGGAA+AGG + chr2_4:52821796-52821815 None:intergenic 50.0%
GGTGAATCTTGAGGTTCCCA+TGG + chr2_4:52821848-52821867 None:intergenic 50.0%
GGGAACCTCAAGATTCACCA+TGG - chr2_4:52821849-52821868 Msa0334480:three_prime_UTR 50.0%
AACCTCAAGAGCCCTGTTCT+TGG + chr2_4:52822560-52822579 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG + chr2_4:52822753-52822772 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG - chr2_4:52822751-52822770 Msa0334480:intron 50.0%
ATCAACGGTCTTCCTGGTGT+CGG - chr2_4:52822979-52822998 Msa0334480:CDS 50.0%
!! AGTATTGGCCACCAGGGTAA+AGG + chr2_4:52823017-52823036 None:intergenic 50.0%
!! GGTCAAAGTATTGGCCACCA+GGG + chr2_4:52823023-52823042 None:intergenic 50.0%
GGCCAATACTTTGACCCTCT+TGG - chr2_4:52823027-52823046 Msa0334480:intron 50.0%
GGCGAAAGTAACTGGATCGT+CGG + chr2_4:52823058-52823077 None:intergenic 50.0%
ACCCTGTTGCCAATAATGCC+TGG - chr2_4:52823199-52823218 Msa0334480:intron 50.0%
CCCAGGCATTATTGGCAACA+GGG + chr2_4:52823203-52823222 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG - chr2_4:52823200-52823219 Msa0334480:intron 50.0%
ACCCAGGCATTATTGGCAAC+AGG + chr2_4:52823204-52823223 None:intergenic 50.0%
TATGCCACCAAGTTTGTGCC+TGG - chr2_4:52823225-52823244 Msa0334480:intron 50.0%
AGAACCAGGCACAAACTTGG+TGG + chr2_4:52823232-52823251 None:intergenic 50.0%
AGAGTGTATGCAAAGCCGCT+AGG - chr2_4:52823713-52823732 Msa0334480:five_prime_UTR 50.0%
GTATGCAAAGCCGCTAGGAT+TGG - chr2_4:52823718-52823737 Msa0334480:five_prime_UTR 50.0%
CGCTACTAGACCAATCCTAG+CGG + chr2_4:52823731-52823750 None:intergenic 50.0%
!! CTAGGATTGGTCTAGTAGCG+AGG - chr2_4:52823731-52823750 Msa0334480:five_prime_UTR 50.0%
TGGTCTAGTAGCGAGGAGTT+TGG - chr2_4:52823738-52823757 Msa0334480:five_prime_UTR 50.0%
! CGAGGAGTTTGGAGTATGCA+TGG - chr2_4:52823749-52823768 Msa0334480:five_prime_UTR 50.0%
TGGAGTATGCATGGGGTTCT+AGG - chr2_4:52823758-52823777 Msa0334480:five_prime_UTR 50.0%
! GCTTGCTGCCATCAATGCCA+TGG + chr2_4:52821749-52821768 None:intergenic 55.0%
CAGCACCCTTCCTTTGACCA+AGG + chr2_4:52821801-52821820 None:intergenic 55.0%
TGCCAAGAACAGGGCTCTTG+AGG - chr2_4:52822555-52822574 Msa0334480:CDS 55.0%
!! TGGGCTATGCTAGGAGCACT+CGG - chr2_4:52822760-52822779 Msa0334480:intron 55.0%
GTCGAAGGGTTCCGCATCAA+CGG - chr2_4:52822964-52822983 Msa0334480:CDS 55.0%
TTCCGCATCAACGGTCTTCC+TGG - chr2_4:52822973-52822992 Msa0334480:CDS 55.0%
CACCAGGAAGACCGTTGATG+CGG + chr2_4:52822978-52822997 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+TGG - chr2_4:52823003-52823022 Msa0334480:CDS 55.0%
GGCAACAACCTTTACCCTGG+TGG - chr2_4:52823006-52823025 Msa0334480:CDS 55.0%
!! GGGTCAAAGTATTGGCCACC+AGG + chr2_4:52823024-52823043 None:intergenic 55.0%
! GATCGTCGGCTAGACCAAGA+GGG + chr2_4:52823044-52823063 None:intergenic 55.0%
! GCTTGCTGCCATCAATGCCA+TGG + chr2_4:52821749-52821768 None:intergenic 55.0%
CAGCACCCTTCCTTTGACCA+AGG + chr2_4:52821801-52821820 None:intergenic 55.0%
TGCCAAGAACAGGGCTCTTG+AGG - chr2_4:52822555-52822574 Msa0334480:CDS 55.0%
!! TGGGCTATGCTAGGAGCACT+CGG - chr2_4:52822760-52822779 Msa0334480:intron 55.0%
GTCGAAGGGTTCCGCATCAA+CGG - chr2_4:52822964-52822983 Msa0334480:CDS 55.0%
TTCCGCATCAACGGTCTTCC+TGG - chr2_4:52822973-52822992 Msa0334480:CDS 55.0%
CACCAGGAAGACCGTTGATG+CGG + chr2_4:52822978-52822997 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+TGG - chr2_4:52823003-52823022 Msa0334480:CDS 55.0%
GGCAACAACCTTTACCCTGG+TGG - chr2_4:52823006-52823025 Msa0334480:CDS 55.0%
!! GGGTCAAAGTATTGGCCACC+AGG + chr2_4:52823024-52823043 None:intergenic 55.0%
! GATCGTCGGCTAGACCAAGA+GGG + chr2_4:52823044-52823063 None:intergenic 55.0%
! GGTCTTCCTGGTGTCGGAGA+GGG - chr2_4:52822985-52823004 Msa0334480:CDS 60.0%
TTGTTGCCCTCTCCGACACC+AGG + chr2_4:52822994-52823013 None:intergenic 60.0%
! GGATCGTCGGCTAGACCAAG+AGG + chr2_4:52823045-52823064 None:intergenic 60.0%
! GGTCTTCCTGGTGTCGGAGA+GGG - chr2_4:52822985-52823004 Msa0334480:CDS 60.0%
TTGTTGCCCTCTCCGACACC+AGG + chr2_4:52822994-52823013 None:intergenic 60.0%
! GGATCGTCGGCTAGACCAAG+AGG + chr2_4:52823045-52823064 None:intergenic 60.0%
! CGGTCTTCCTGGTGTCGGAG+AGG - chr2_4:52822984-52823003 Msa0334480:CDS 65.0%
! CGGTCTTCCTGGTGTCGGAG+AGG - chr2_4:52822984-52823003 Msa0334480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52821667 52823786 52821667 ID=Msa0334480;Name=Msa0334480
chr2_4 mRNA 52821667 52823786 52821667 ID=Msa0334480-mRNA-1;Parent=Msa0334480;Name=Msa0334480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|1|1|1|1|3|532|264
chr2_4 exon 52821667 52822708 52821667 ID=Msa0334480-mRNA-1:exon:16002;Parent=Msa0334480-mRNA-1
chr2_4 exon 52822877 52823038 52822877 ID=Msa0334480-mRNA-1:exon:16001;Parent=Msa0334480-mRNA-1
chr2_4 exon 52823583 52823786 52823583 ID=Msa0334480-mRNA-1:exon:16000;Parent=Msa0334480-mRNA-1
chr2_4 five_prime_UTR 52823706 52823786 52823706 ID=Msa0334480-mRNA-1:five_prime_utr;Parent=Msa0334480-mRNA-1
chr2_4 CDS 52823583 52823705 52823583 ID=Msa0334480-mRNA-1:cds;Parent=Msa0334480-mRNA-1
chr2_4 CDS 52822877 52823038 52822877 ID=Msa0334480-mRNA-1:cds;Parent=Msa0334480-mRNA-1
chr2_4 CDS 52822199 52822708 52822199 ID=Msa0334480-mRNA-1:cds;Parent=Msa0334480-mRNA-1
chr2_4 three_prime_UTR 52821667 52822198 52821667 ID=Msa0334480-mRNA-1:three_prime_utr;Parent=Msa0334480-mRNA-1
Gene Sequence

>Msa0334480

ATGGCATTGATGGCAGCAAGCTCAGCAGCTGTTGTTAAACAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCTGCCAACCCTCTTAGAGATGTTGTTGCCATGGGAACCTCAAGATTCACCATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGACCATTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGATACTGCTGGTTTATCTGCTGATCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCACTCGGATGCATCACACCTGAAGTACTTGAAAAATGGGTGAGAGTTGATTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCGCAAATCTTCTCAGAAGGTGGTCTTGACTATTTAGGGAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGTCTTGTCGAAGGGTTCCGCATCAACGGTCTTCCTGGTGTCGGAGAGGGCAACAACCTTTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTAGCCGACGATCCAGTTACTTTCGCCGAGCTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTCACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGACAACCCTGTTGCCAATAATGCCTGGGTTTATGCCACCAAGTTTGTGCCTGGTTCTTAA

Protein sequence

>Msa0334480

MALMAASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGS*