AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539570 MtrunA17_Chr4g0014421 95.926 270 10 1 1 270 1 269 2.27e-173 479
Msa0539570 MtrunA17_Chr2g0328581 50.000 62 29 1 131 192 77 136 3.95e-12 63.9
Msa0539570 MtrunA17_Chr5g0405501 37.500 88 52 2 109 195 53 138 8.08e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539570 AT4G09350.1 55.118 254 103 3 17 269 3 246 2.29e-96 283
Msa0539570 AT5G59610.2 49.231 65 31 1 127 191 71 133 3.76e-11 62.4
Msa0539570 AT5G59610.1 49.231 65 31 1 127 191 71 133 9.00e-11 61.2
Msa0539570 AT5G59610.4 49.231 65 31 1 127 191 71 133 9.00e-11 61.2
Msa0539570 AT5G59610.3 49.231 65 31 1 127 191 71 133 9.72e-11 61.2
Msa0539570 AT5G59610.5 49.231 65 31 1 127 191 71 133 9.72e-11 61.2

Find 52 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAGTTATGGTTAGATTT+TGG 0.173221 4_1:+20652098 None:intergenic
TCTTCACCCAAAAGCTTCTT+AGG 0.196506 4_1:+20651792 None:intergenic
CTACTATTCAATCCAATCTT+AGG 0.223430 4_1:-20652026 Msa0539570:CDS
TCTTATTCTTCTTATTGTTT+TGG 0.259661 4_1:+20651998 None:intergenic
ATGTGATGCTATAGAATTAA+AGG 0.272331 4_1:-20650625 Msa0539570:three_prime_UTR
GGAGAAACCTAAGAAGCTTT+TGG 0.298843 4_1:-20651799 Msa0539570:CDS
AAGCAATCAAAGTAGCTTTC+AGG 0.300211 4_1:-20651053 Msa0539570:CDS
ATGAAAACAAGCAGATTCTT+AGG 0.302121 4_1:-20651099 Msa0539570:intron
GAAAATTGGTCTCTTATATT+CGG 0.302342 4_1:+20650497 None:intergenic
TGCATTGGTTTGTTGCTGTT+TGG 0.332246 4_1:+20651824 None:intergenic
CCAAGACGATCAACCATATC+TGG 0.335910 4_1:+20650805 None:intergenic
ATTGCTTCTACATCAGCTTC+TGG 0.336747 4_1:+20651069 None:intergenic
TTCTTCAATGCTACCTCATA+TGG 0.345848 4_1:+20650841 None:intergenic
TTATGAACCTGTTCCAGATA+TGG 0.348047 4_1:-20650818 Msa0539570:CDS
AAAATTGAAAATAAAATTAG+AGG 0.357068 4_1:-20650866 Msa0539570:CDS
GCAAGTTCATGCTTCTACTA+AGG 0.361219 4_1:-20651934 Msa0539570:CDS
AGAGGGAGTGAAGTTGTGTC+TGG 0.393350 4_1:+20651009 None:intergenic
AATCAATTAGAATCTGTATC+TGG 0.402865 4_1:-20650658 Msa0539570:three_prime_UTR
AAAGCAGAAGATTCTATGAT+TGG 0.410574 4_1:-20650924 Msa0539570:CDS
CTTAGGTTTCTCCTCTGCAT+TGG 0.423443 4_1:+20651809 None:intergenic
GGATTGAATAGTAGAATTTG+TGG 0.442017 4_1:+20652035 None:intergenic
GTTGAAAACAGAAATCAAAT+AGG 0.456704 4_1:+20650576 None:intergenic
CAAAATATCATAACAGAACA+TGG 0.459987 4_1:-20652144 Msa0539570:exon
AACGATGATGAAGGTTGGAT+TGG 0.462992 4_1:-20651855 Msa0539570:CDS
CGATCAACCATATCTGGAAC+AGG 0.472752 4_1:+20650811 None:intergenic
GATGATGAAGGTTGGATTGG+AGG 0.473073 4_1:-20651852 Msa0539570:CDS
CTTCATCATCGTTCTCCCAA+TGG 0.497160 4_1:+20651865 None:intergenic
AATAGTAGAATTTGTGGAGA+AGG 0.498829 4_1:+20652041 None:intergenic
CAAACTGTAGTGAGAGTTTG+AGG 0.501928 4_1:+20651956 None:intergenic
AAAATTAGAGGATCCATATG+AGG 0.515032 4_1:-20650854 Msa0539570:CDS
TGGATTCTTGTGTCAACTCC+AGG 0.515932 4_1:+20651885 None:intergenic
CCAGATATGGTTGATCGTCT+TGG 0.521131 4_1:-20650805 Msa0539570:CDS
TGGAAGAAAAGAAATAGTTA+TGG 0.532913 4_1:+20652087 None:intergenic
TGATTGGACCCTTGCTCAAG+AGG 0.534983 4_1:-20650908 Msa0539570:CDS
GGGAGAACGATGATGAAGGT+TGG 0.543724 4_1:-20651860 Msa0539570:CDS
AGTTGACACAAGAATCCATT+GGG 0.545872 4_1:-20651880 Msa0539570:CDS
GATATGGTTGATCGTCTTGG+TGG 0.546904 4_1:-20650802 Msa0539570:CDS
GACTTGCAACCTCTTGAGCA+AGG 0.555969 4_1:+20650899 None:intergenic
CATTGGGAGAACGATGATGA+AGG 0.556042 4_1:-20651864 Msa0539570:CDS
AAAATATCATAACAGAACAT+GGG 0.589084 4_1:-20652143 Msa0539570:exon
GCTTCTACTAAGGAGTCTCC+AGG 0.592889 4_1:-20651924 Msa0539570:CDS
AAATATCATAACAGAACATG+GGG 0.627032 4_1:-20652142 Msa0539570:exon
AGCTTTCAGGAAACTATCAA+AGG 0.628834 4_1:-20651040 Msa0539570:CDS
ACTTGCAACCTCTTGAGCAA+GGG 0.629898 4_1:+20650900 None:intergenic
TGCTGTTGAAGCCATGAGGG+TGG 0.630451 4_1:+20652067 None:intergenic
ATATGGTTGATCGTCTTGGT+GGG 0.630473 4_1:-20650801 Msa0539570:CDS
TGTTGCTGTTGAAGCCATGA+GGG 0.642871 4_1:+20652064 None:intergenic
GAGTTGACACAAGAATCCAT+TGG 0.644255 4_1:-20651881 Msa0539570:CDS
ACAGCAACAAACCAATGCAG+AGG 0.659212 4_1:-20651820 Msa0539570:CDS
GTGTTGCTGTTGAAGCCATG+AGG 0.677182 4_1:+20652063 None:intergenic
ATTCTTGTGTCAACTCCAGG+TGG 0.739348 4_1:+20651888 None:intergenic
ACTGTAGTGAGAGTTTGAGG+TGG 0.757069 4_1:+20651959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAAATAAAATTAG+AGG - chr4_1:20651729-20651748 Msa0539570:intron 10.0%
!! AAAATTGAAAATAAAATTAG+AGG - chr4_1:20651729-20651748 Msa0539570:intron 10.0%
!!! TAAGAAGAATAAGATTTTTT+AGG - chr4_1:20650606-20650625 Msa0539570:three_prime_UTR 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG + chr4_1:20650960-20650979 None:intergenic 15.0%
!! GTTAAGATAAAAATATCAAA+GGG - chr4_1:20651272-20651291 Msa0539570:intron 15.0%
!!! TTATTTTCAATTTTTCTTGT+TGG + chr4_1:20651723-20651742 None:intergenic 15.0%
!! AAAAAAAAATTCATAACACT+TGG - chr4_1:20651993-20652012 Msa0539570:CDS 15.0%
!! AAAAAAAATTCATAACACTT+GGG - chr4_1:20651994-20652013 Msa0539570:CDS 15.0%
!!! TTTTAGCTATAAAAGAAAAT+TGG + chr4_1:20652115-20652134 None:intergenic 15.0%
!!! TAAGAAGAATAAGATTTTTT+AGG - chr4_1:20650606-20650625 Msa0539570:three_prime_UTR 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG + chr4_1:20650960-20650979 None:intergenic 15.0%
!! GTTAAGATAAAAATATCAAA+GGG - chr4_1:20651272-20651291 Msa0539570:intron 15.0%
!!! TTATTTTCAATTTTTCTTGT+TGG + chr4_1:20651723-20651742 None:intergenic 15.0%
!! AAAAAAAAATTCATAACACT+TGG - chr4_1:20651993-20652012 Msa0539570:CDS 15.0%
!! AAAAAAAATTCATAACACTT+GGG - chr4_1:20651994-20652013 Msa0539570:CDS 15.0%
!!! TTTTAGCTATAAAAGAAAAT+TGG + chr4_1:20652115-20652134 None:intergenic 15.0%
!! AAAATATCATAACAGAACAT+GGG - chr4_1:20650452-20650471 Msa0539570:three_prime_UTR 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG + chr4_1:20650500-20650519 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG + chr4_1:20650600-20650619 None:intergenic 20.0%
!! GGTTAAGATAAAAATATCAA+AGG - chr4_1:20651271-20651290 Msa0539570:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG + chr4_1:20651620-20651639 None:intergenic 20.0%
!! AAAAAAATTCATAACACTTG+GGG - chr4_1:20651995-20652014 Msa0539570:CDS 20.0%
!! AAAATATCATAACAGAACAT+GGG - chr4_1:20650452-20650471 Msa0539570:three_prime_UTR 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG + chr4_1:20650500-20650519 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG + chr4_1:20650600-20650619 None:intergenic 20.0%
!! GGTTAAGATAAAAATATCAA+AGG - chr4_1:20651271-20651290 Msa0539570:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG + chr4_1:20651620-20651639 None:intergenic 20.0%
!! AAAAAAATTCATAACACTTG+GGG - chr4_1:20651995-20652014 Msa0539570:CDS 20.0%
! CAAAATATCATAACAGAACA+TGG - chr4_1:20650451-20650470 Msa0539570:three_prime_UTR 25.0%
! AAATATCATAACAGAACATG+GGG - chr4_1:20650453-20650472 Msa0539570:three_prime_UTR 25.0%
! TGGAAGAAAAGAAATAGTTA+TGG + chr4_1:20650511-20650530 None:intergenic 25.0%
!! TGGTGTTTTATAGTTTTTGT+AGG + chr4_1:20650890-20650909 None:intergenic 25.0%
!! GGCAAAATTTAGTTTACAAT+CGG + chr4_1:20650939-20650958 None:intergenic 25.0%
! ACTAGAAGTTAGTATATGTT+TGG - chr4_1:20650976-20650995 Msa0539570:CDS 25.0%
!! AATTTTCACGTTGTTACAAA+AGG + chr4_1:20651066-20651085 None:intergenic 25.0%
!! CGATGGTTTTTATAAAATCA+CGG + chr4_1:20651091-20651110 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG - chr4_1:20651937-20651956 Msa0539570:CDS 25.0%
! ATGTGATGCTATAGAATTAA+AGG - chr4_1:20651970-20651989 Msa0539570:CDS 25.0%
! GTTGAAAACAGAAATCAAAT+AGG + chr4_1:20652022-20652041 None:intergenic 25.0%
!! GAAAATTGGTCTCTTATATT+CGG + chr4_1:20652101-20652120 None:intergenic 25.0%
! CAAAATATCATAACAGAACA+TGG - chr4_1:20650451-20650470 Msa0539570:three_prime_UTR 25.0%
! AAATATCATAACAGAACATG+GGG - chr4_1:20650453-20650472 Msa0539570:three_prime_UTR 25.0%
! TGGAAGAAAAGAAATAGTTA+TGG + chr4_1:20650511-20650530 None:intergenic 25.0%
!! TGGTGTTTTATAGTTTTTGT+AGG + chr4_1:20650890-20650909 None:intergenic 25.0%
!! GGCAAAATTTAGTTTACAAT+CGG + chr4_1:20650939-20650958 None:intergenic 25.0%
! ACTAGAAGTTAGTATATGTT+TGG - chr4_1:20650976-20650995 Msa0539570:CDS 25.0%
!! AATTTTCACGTTGTTACAAA+AGG + chr4_1:20651066-20651085 None:intergenic 25.0%
!! CGATGGTTTTTATAAAATCA+CGG + chr4_1:20651091-20651110 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG - chr4_1:20651937-20651956 Msa0539570:CDS 25.0%
! ATGTGATGCTATAGAATTAA+AGG - chr4_1:20651970-20651989 Msa0539570:CDS 25.0%
! GTTGAAAACAGAAATCAAAT+AGG + chr4_1:20652022-20652041 None:intergenic 25.0%
!! GAAAATTGGTCTCTTATATT+CGG + chr4_1:20652101-20652120 None:intergenic 25.0%
AATAGTAGAATTTGTGGAGA+AGG + chr4_1:20650557-20650576 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG + chr4_1:20650563-20650582 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG - chr4_1:20650569-20650588 Msa0539570:three_prime_UTR 30.0%
!! GTTTTGGTATTTCCTAAGAT+TGG + chr4_1:20650584-20650603 None:intergenic 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG + chr4_1:20650910-20650929 None:intergenic 30.0%
GACATAATAGAAAATCGAAG+TGG + chr4_1:20650917-20650936 None:intergenic 30.0%
!!! TGTTTGGATTAGCTTTTACA+AGG - chr4_1:20650992-20651011 Msa0539570:CDS 30.0%
TCAGCTAAAGTTGAATAGTT+TGG - chr4_1:20651147-20651166 Msa0539570:intron 30.0%
AGGCTAAAACAACTATTAGT+CGG - chr4_1:20651199-20651218 Msa0539570:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG - chr4_1:20651250-20651269 Msa0539570:intron 30.0%
!! CTTTTTCATGAAACAATCTC+TGG + chr4_1:20651430-20651449 None:intergenic 30.0%
ATGAAAACAAGCAGATTCTT+AGG - chr4_1:20651496-20651515 Msa0539570:intron 30.0%
AAAGCAGAAGATTCTATGAT+TGG - chr4_1:20651671-20651690 Msa0539570:intron 30.0%
AAAATTAGAGGATCCATATG+AGG - chr4_1:20651741-20651760 Msa0539570:intron 30.0%
AATAGTAGAATTTGTGGAGA+AGG + chr4_1:20650557-20650576 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG + chr4_1:20650563-20650582 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG - chr4_1:20650569-20650588 Msa0539570:three_prime_UTR 30.0%
!! GTTTTGGTATTTCCTAAGAT+TGG + chr4_1:20650584-20650603 None:intergenic 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG + chr4_1:20650910-20650929 None:intergenic 30.0%
GACATAATAGAAAATCGAAG+TGG + chr4_1:20650917-20650936 None:intergenic 30.0%
!!! TGTTTGGATTAGCTTTTACA+AGG - chr4_1:20650992-20651011 Msa0539570:CDS 30.0%
TCAGCTAAAGTTGAATAGTT+TGG - chr4_1:20651147-20651166 Msa0539570:intron 30.0%
AGGCTAAAACAACTATTAGT+CGG - chr4_1:20651199-20651218 Msa0539570:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG - chr4_1:20651250-20651269 Msa0539570:intron 30.0%
!! CTTTTTCATGAAACAATCTC+TGG + chr4_1:20651430-20651449 None:intergenic 30.0%
ATGAAAACAAGCAGATTCTT+AGG - chr4_1:20651496-20651515 Msa0539570:intron 30.0%
AAAGCAGAAGATTCTATGAT+TGG - chr4_1:20651671-20651690 Msa0539570:intron 30.0%
AAAATTAGAGGATCCATATG+AGG - chr4_1:20651741-20651760 Msa0539570:intron 30.0%
AGTTGACACAAGAATCCATT+GGG - chr4_1:20650715-20650734 Msa0539570:CDS 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG - chr4_1:20650797-20650816 Msa0539570:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG - chr4_1:20650830-20650849 Msa0539570:CDS 35.0%
! TTTCAGGATTTTCACGTCTA+CGG + chr4_1:20651031-20651050 None:intergenic 35.0%
!!! AAGGTTGCTTTTGTAGTTTC+AGG + chr4_1:20651047-20651066 None:intergenic 35.0%
AAAAACCATCGCTAAACCAA+AGG - chr4_1:20651100-20651119 Msa0539570:intron 35.0%
TACGACTTGAGTTCAATTGT+TGG - chr4_1:20651171-20651190 Msa0539570:intron 35.0%
! GAGTTCAATTGTTGGCTAAA+AGG - chr4_1:20651179-20651198 Msa0539570:intron 35.0%
ATGTCAGAGTTTGATCGAAA+AGG + chr4_1:20651234-20651253 None:intergenic 35.0%
CGATCAAACTCTGACATAAT+CGG - chr4_1:20651237-20651256 Msa0539570:intron 35.0%
! GACATAATCGGTACATGTTT+TGG - chr4_1:20651249-20651268 Msa0539570:intron 35.0%
! TGACAAGAGTTGCTGATTAA+TGG - chr4_1:20651464-20651483 Msa0539570:intron 35.0%
AAGCAATCAAAGTAGCTTTC+AGG - chr4_1:20651542-20651561 Msa0539570:intron 35.0%
AGCTTTCAGGAAACTATCAA+AGG - chr4_1:20651555-20651574 Msa0539570:intron 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG + chr4_1:20651606-20651625 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG + chr4_1:20651607-20651626 None:intergenic 35.0%
TTCTTCAATGCTACCTCATA+TGG + chr4_1:20651757-20651776 None:intergenic 35.0%
TTATGAACCTGTTCCAGATA+TGG - chr4_1:20651777-20651796 Msa0539570:CDS 35.0%
AGTTGACACAAGAATCCATT+GGG - chr4_1:20650715-20650734 Msa0539570:CDS 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG - chr4_1:20650797-20650816 Msa0539570:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG - chr4_1:20650830-20650849 Msa0539570:CDS 35.0%
! TTTCAGGATTTTCACGTCTA+CGG + chr4_1:20651031-20651050 None:intergenic 35.0%
!!! AAGGTTGCTTTTGTAGTTTC+AGG + chr4_1:20651047-20651066 None:intergenic 35.0%
AAAAACCATCGCTAAACCAA+AGG - chr4_1:20651100-20651119 Msa0539570:intron 35.0%
TACGACTTGAGTTCAATTGT+TGG - chr4_1:20651171-20651190 Msa0539570:intron 35.0%
! GAGTTCAATTGTTGGCTAAA+AGG - chr4_1:20651179-20651198 Msa0539570:intron 35.0%
ATGTCAGAGTTTGATCGAAA+AGG + chr4_1:20651234-20651253 None:intergenic 35.0%
CGATCAAACTCTGACATAAT+CGG - chr4_1:20651237-20651256 Msa0539570:intron 35.0%
! GACATAATCGGTACATGTTT+TGG - chr4_1:20651249-20651268 Msa0539570:intron 35.0%
! TGACAAGAGTTGCTGATTAA+TGG - chr4_1:20651464-20651483 Msa0539570:intron 35.0%
AAGCAATCAAAGTAGCTTTC+AGG - chr4_1:20651542-20651561 Msa0539570:intron 35.0%
AGCTTTCAGGAAACTATCAA+AGG - chr4_1:20651555-20651574 Msa0539570:intron 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG + chr4_1:20651606-20651625 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG + chr4_1:20651607-20651626 None:intergenic 35.0%
TTCTTCAATGCTACCTCATA+TGG + chr4_1:20651757-20651776 None:intergenic 35.0%
TTATGAACCTGTTCCAGATA+TGG - chr4_1:20651777-20651796 Msa0539570:CDS 35.0%
!!! GGTTAGATTTTGGAATGCTC+AGG + chr4_1:20650490-20650509 Msa0539560:three_prime_UTR 40.0%
! TTTCTTTTCTTCCACCCTCA+TGG - chr4_1:20650517-20650536 Msa0539570:three_prime_UTR 40.0%
CAAACTGTAGTGAGAGTTTG+AGG + chr4_1:20650642-20650661 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG - chr4_1:20650661-20650680 Msa0539570:three_prime_UTR 40.0%
GAGTTGACACAAGAATCCAT+TGG - chr4_1:20650714-20650733 Msa0539570:CDS 40.0%
AACGATGATGAAGGTTGGAT+TGG - chr4_1:20650740-20650759 Msa0539570:CDS 40.0%
!! TGCATTGGTTTGTTGCTGTT+TGG + chr4_1:20650774-20650793 None:intergenic 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG - chr4_1:20650796-20650815 Msa0539570:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG + chr4_1:20650806-20650825 None:intergenic 40.0%
! TTCAGGATTTTCACGTCTAC+GGG + chr4_1:20651030-20651049 None:intergenic 40.0%
AGTTACACTTAGTGCTCCTT+TGG + chr4_1:20651119-20651138 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG + chr4_1:20651529-20651548 None:intergenic 40.0%
ATATGGTTGATCGTCTTGGT+GGG - chr4_1:20651794-20651813 Msa0539570:CDS 40.0%
!!! GGTTAGATTTTGGAATGCTC+AGG + chr4_1:20650490-20650509 Msa0539560:three_prime_UTR 40.0%
! TTTCTTTTCTTCCACCCTCA+TGG - chr4_1:20650517-20650536 Msa0539570:three_prime_UTR 40.0%
CAAACTGTAGTGAGAGTTTG+AGG + chr4_1:20650642-20650661 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG - chr4_1:20650661-20650680 Msa0539570:three_prime_UTR 40.0%
GAGTTGACACAAGAATCCAT+TGG - chr4_1:20650714-20650733 Msa0539570:CDS 40.0%
AACGATGATGAAGGTTGGAT+TGG - chr4_1:20650740-20650759 Msa0539570:CDS 40.0%
!! TGCATTGGTTTGTTGCTGTT+TGG + chr4_1:20650774-20650793 None:intergenic 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG - chr4_1:20650796-20650815 Msa0539570:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG + chr4_1:20650806-20650825 None:intergenic 40.0%
! TTCAGGATTTTCACGTCTAC+GGG + chr4_1:20651030-20651049 None:intergenic 40.0%
AGTTACACTTAGTGCTCCTT+TGG + chr4_1:20651119-20651138 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG + chr4_1:20651529-20651548 None:intergenic 40.0%
ATATGGTTGATCGTCTTGGT+GGG - chr4_1:20651794-20651813 Msa0539570:CDS 40.0%
! TGTTGCTGTTGAAGCCATGA+GGG + chr4_1:20650534-20650553 None:intergenic 45.0%
ACTGTAGTGAGAGTTTGAGG+TGG + chr4_1:20650639-20650658 None:intergenic 45.0%
!! AACTCCAGGTGGTGCTTTTT+GGG + chr4_1:20650699-20650718 None:intergenic 45.0%
ATTCTTGTGTCAACTCCAGG+TGG + chr4_1:20650710-20650729 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG + chr4_1:20650713-20650732 None:intergenic 45.0%
CTTCATCATCGTTCTCCCAA+TGG + chr4_1:20650733-20650752 None:intergenic 45.0%
CATTGGGAGAACGATGATGA+AGG - chr4_1:20650731-20650750 Msa0539570:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG - chr4_1:20650743-20650762 Msa0539570:CDS 45.0%
ACAGCAACAAACCAATGCAG+AGG - chr4_1:20650775-20650794 Msa0539570:CDS 45.0%
CTTAGGTTTCTCCTCTGCAT+TGG + chr4_1:20650789-20650808 None:intergenic 45.0%
ACTTGCAACCTCTTGAGCAA+GGG + chr4_1:20651698-20651717 None:intergenic 45.0%
! CGATCAACCATATCTGGAAC+AGG + chr4_1:20651787-20651806 None:intergenic 45.0%
CCAAGACGATCAACCATATC+TGG + chr4_1:20651793-20651812 None:intergenic 45.0%
CCAGATATGGTTGATCGTCT+TGG - chr4_1:20651790-20651809 Msa0539570:CDS 45.0%
GATATGGTTGATCGTCTTGG+TGG - chr4_1:20651793-20651812 Msa0539570:CDS 45.0%
! TGTTGCTGTTGAAGCCATGA+GGG + chr4_1:20650534-20650553 None:intergenic 45.0%
ACTGTAGTGAGAGTTTGAGG+TGG + chr4_1:20650639-20650658 None:intergenic 45.0%
!! AACTCCAGGTGGTGCTTTTT+GGG + chr4_1:20650699-20650718 None:intergenic 45.0%
ATTCTTGTGTCAACTCCAGG+TGG + chr4_1:20650710-20650729 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG + chr4_1:20650713-20650732 None:intergenic 45.0%
CTTCATCATCGTTCTCCCAA+TGG + chr4_1:20650733-20650752 None:intergenic 45.0%
CATTGGGAGAACGATGATGA+AGG - chr4_1:20650731-20650750 Msa0539570:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG - chr4_1:20650743-20650762 Msa0539570:CDS 45.0%
ACAGCAACAAACCAATGCAG+AGG - chr4_1:20650775-20650794 Msa0539570:CDS 45.0%
CTTAGGTTTCTCCTCTGCAT+TGG + chr4_1:20650789-20650808 None:intergenic 45.0%
ACTTGCAACCTCTTGAGCAA+GGG + chr4_1:20651698-20651717 None:intergenic 45.0%
! CGATCAACCATATCTGGAAC+AGG + chr4_1:20651787-20651806 None:intergenic 45.0%
CCAAGACGATCAACCATATC+TGG + chr4_1:20651793-20651812 None:intergenic 45.0%
CCAGATATGGTTGATCGTCT+TGG - chr4_1:20651790-20651809 Msa0539570:CDS 45.0%
GATATGGTTGATCGTCTTGG+TGG - chr4_1:20651793-20651812 Msa0539570:CDS 45.0%
! GTGTTGCTGTTGAAGCCATG+AGG + chr4_1:20650535-20650554 None:intergenic 50.0%
GCTTCTACTAAGGAGTCTCC+AGG - chr4_1:20650671-20650690 Msa0539570:exon 50.0%
!! ACTCCAGGTGGTGCTTTTTG+GGG + chr4_1:20650698-20650717 None:intergenic 50.0%
! CAACTCCAGGTGGTGCTTTT+TGG + chr4_1:20650700-20650719 None:intergenic 50.0%
GGGAGAACGATGATGAAGGT+TGG - chr4_1:20650735-20650754 Msa0539570:CDS 50.0%
! GTGCTCCTTTGGTTTAGCGA+TGG + chr4_1:20651108-20651127 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG + chr4_1:20651589-20651608 None:intergenic 50.0%
TGATTGGACCCTTGCTCAAG+AGG - chr4_1:20651687-20651706 Msa0539570:intron 50.0%
GACTTGCAACCTCTTGAGCA+AGG + chr4_1:20651699-20651718 None:intergenic 50.0%
! GTGTTGCTGTTGAAGCCATG+AGG + chr4_1:20650535-20650554 None:intergenic 50.0%
GCTTCTACTAAGGAGTCTCC+AGG - chr4_1:20650671-20650690 Msa0539570:exon 50.0%
!! ACTCCAGGTGGTGCTTTTTG+GGG + chr4_1:20650698-20650717 None:intergenic 50.0%
! CAACTCCAGGTGGTGCTTTT+TGG + chr4_1:20650700-20650719 None:intergenic 50.0%
GGGAGAACGATGATGAAGGT+TGG - chr4_1:20650735-20650754 Msa0539570:CDS 50.0%
! GTGCTCCTTTGGTTTAGCGA+TGG + chr4_1:20651108-20651127 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG + chr4_1:20651589-20651608 None:intergenic 50.0%
TGATTGGACCCTTGCTCAAG+AGG - chr4_1:20651687-20651706 Msa0539570:intron 50.0%
GACTTGCAACCTCTTGAGCA+AGG + chr4_1:20651699-20651718 None:intergenic 50.0%
TGCTGTTGAAGCCATGAGGG+TGG + chr4_1:20650531-20650550 None:intergenic 55.0%
TGCTGTTGAAGCCATGAGGG+TGG + chr4_1:20650531-20650550 None:intergenic 55.0%
!!! GGTGGTGCTTTTTGGGGTCC+TGG + chr4_1:20650692-20650711 None:intergenic 60.0%
!! GGACCCCAAAAAGCACCACC+TGG - chr4_1:20650692-20650711 Msa0539570:CDS 60.0%
!!! GGTGGTGCTTTTTGGGGTCC+TGG + chr4_1:20650692-20650711 None:intergenic 60.0%
!! GGACCCCAAAAAGCACCACC+TGG - chr4_1:20650692-20650711 Msa0539570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 20650450 20652167 20650450 ID=Msa0539570;Name=Msa0539570
chr4_1 mRNA 20650450 20652167 20650450 ID=Msa0539570-mRNA-1;Parent=Msa0539570;Name=Msa0539570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|2|240|270
chr4_1 exon 20650450 20651107 20650450 ID=Msa0539570-mRNA-1:exon:5902;Parent=Msa0539570-mRNA-1
chr4_1 exon 20651753 20652167 20651753 ID=Msa0539570-mRNA-1:exon:5901;Parent=Msa0539570-mRNA-1
chr4_1 five_prime_UTR 20652148 20652167 20652148 ID=Msa0539570-mRNA-1:five_prime_utr;Parent=Msa0539570-mRNA-1
chr4_1 CDS 20651753 20652147 20651753 ID=Msa0539570-mRNA-1:cds;Parent=Msa0539570-mRNA-1
chr4_1 CDS 20650690 20651107 20650690 ID=Msa0539570-mRNA-1:cds;Parent=Msa0539570-mRNA-1
chr4_1 three_prime_UTR 20650450 20650689 20650450 ID=Msa0539570-mRNA-1:three_prime_utr;Parent=Msa0539570-mRNA-1
Gene Sequence

>Msa0539570

ATGGGGCATGTATTGAACCTGAGCATTCCAAAATCTAACCATAACTATTTCTTTTCTTCCACCCTCATGGCTTCAACAGCAACACCTTCTCCACAAATTCTACTATTCAATCCAATCTTAGGAAATACCAAAACAATAAGAAGAATAAGATTTTTTAGGATAACAACCACCTCAAACTCTCACTACAGTTTGCAAGTTCATGCTTCTACTAAGGAGTCTCCAGGACCCCAAAAAGCACCACCTGGAGTTGACACAAGAATCCATTGGGAGAACGATGATGAAGGTTGGATTGGAGGTAGCACCAAACAGCAACAAACCAATGCAGAGGAGAAACCTAAGAAGCTTTTGGGTGAAGATTTTGCTGATTTGCTCAATTTTCAAGGTTCTCATTATGAATTCTTAGGAATATCACCAGAAGCTGATGTAGAAGCAATCAAAGTAGCTTTCAGGAAACTATCAAAGGAGTATCATCCAGACACAACTTCACTCCCTCTAAAAACAGCCTCAGAAAAATTCATGAAATTAAAAGAAGTTTACACTGTTCTGAGCAATGAAGAAAGCAGAAGATTCTATGATTGGACCCTTGCTCAAGAGGTTGCAAGTCGCCAACAAGAAAAATTGAAAATAAAATTAGAGGATCCATATGAGGTAGCATTGAAGAATTATGAACCTGTTCCAGATATGGTTGATCGTCTTGGTGGGAAGAATATGAAGCTTAGTGATCAAGCTGTTTCAGCTATTACTATTGATATTTTTATCATTATTTTTGCTATATGTTGTATCACTTATGTAGTTTTCTTTAAAGAATACTGA

Protein sequence

>Msa0539570

MGHVLNLSIPKSNHNYFFSSTLMASTATPSPQILLFNPILGNTKTIRRIRFFRITTTSNSHYSLQVHASTKESPGPQKAPPGVDTRIHWENDDEGWIGGSTKQQQTNAEEKPKKLLGEDFADLLNFQGSHYEFLGISPEADVEAIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTLAQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIIIFAICCITYVVFFKEY*