AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561750 MtrunA17_Chr4g0052401 97.716 788 5 2 1 776 1 787 0.0 1571
Msa0561750 MtrunA17_Chr2g0297291 80.202 793 136 6 1 776 1 789 0.0 1273
Msa0561750 MtrunA17_Chr6g0461871 47.843 765 357 5 50 776 25 785 0.0 715
Msa0561750 MtrunA17_Chr5g0430731 45.225 754 377 8 42 776 18 754 0.0 678
Msa0561750 MtrunA17_Chr6g0451081 44.854 787 385 11 28 776 1 776 0.0 677
Msa0561750 MtrunA17_Chr2g0297311 78.652 445 83 1 1 433 1 445 0.0 675
Msa0561750 MtrunA17_Chr3g0128831 45.750 800 377 13 28 776 1 794 0.0 667
Msa0561750 MtrunA17_Chr7g0268981 43.603 766 384 6 23 774 40 771 0.0 663
Msa0561750 MtrunA17_Chr8g0365001 45.466 783 382 11 26 776 71 840 0.0 655
Msa0561750 MtrunA17_Chr4g0055471 44.888 802 391 13 12 776 28 815 0.0 649
Msa0561750 MtrunA17_Chr2g0279131 44.744 780 396 10 22 776 80 849 0.0 649
Msa0561750 MtrunA17_Chr5g0429991 44.356 753 385 9 52 776 103 849 0.0 620
Msa0561750 MtrunA17_Chr8g0387661 43.462 780 392 9 41 776 18 792 0.0 614
Msa0561750 MtrunA17_Chr8g0380281 42.172 792 412 10 18 776 4 782 0.0 605
Msa0561750 MtrunA17_Chr2g0297321 78.510 349 66 5 433 776 3 347 0.0 553
Msa0561750 MtrunA17_Chr8g0393241 37.848 790 429 13 40 773 13 796 7.89e-175 522
Msa0561750 MtrunA17_Chr8g0375411 35.752 758 396 11 34 774 13 696 2.22e-151 458
Msa0561750 MtrunA17_Chr8g0365031 38.743 573 273 6 218 774 39 549 2.41e-142 430
Msa0561750 MtrunA17_Chr8g0344561 39.394 594 310 9 199 776 13 572 1.26e-141 429
Msa0561750 MtrunA17_Chr5g0430571 40.388 567 279 11 219 776 19 535 2.17e-136 414
Msa0561750 MtrunA17_Chr5g0413721 50.452 442 193 7 28 445 1 440 1.75e-135 422
Msa0561750 MtrunA17_Chr5g0413721 39.286 364 194 5 432 776 516 871 5.66e-79 271
Msa0561750 MtrunA17_Chr8g0344591 42.601 446 213 7 199 628 13 431 4.76e-113 351
Msa0561750 MtrunA17_Chr8g0365041 51.777 197 93 1 22 216 35 231 1.84e-58 199
Msa0561750 MtrunA17_Chr5g0413751 49.432 176 89 0 433 608 133 308 1.21e-56 196
Msa0561750 MtrunA17_Chr5g0413751 45.652 92 45 1 109 195 47 138 4.35e-18 85.9
Msa0561750 MtrunA17_Chr8g0344581 54.000 150 66 1 50 199 4 150 9.25e-48 166
Msa0561750 MtrunA17_Chr5g0430551 52.597 154 70 1 49 199 10 163 1.03e-47 167
Msa0561750 MtrunA17_Chr8g0344551 54.000 150 66 1 50 199 4 150 1.48e-47 165
Msa0561750 MtrunA17_Chr1g0159401 44.538 119 59 2 197 315 12 123 4.39e-23 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561750 AT2G35060.4 74.250 800 174 7 1 776 1 792 0.0 1177
Msa0561750 AT2G35060.1 74.250 800 174 7 1 776 1 792 0.0 1177
Msa0561750 AT2G35060.3 74.250 800 174 7 1 776 1 792 0.0 1177
Msa0561750 AT1G31120.1 75.093 803 166 8 1 776 1 796 0.0 1175
Msa0561750 AT2G35060.2 74.157 801 174 8 1 776 1 793 0.0 1173
Msa0561750 AT4G19960.2 67.284 810 228 6 1 776 1 807 0.0 1035
Msa0561750 AT4G19960.1 65.981 826 228 7 1 776 1 823 0.0 1026
Msa0561750 AT4G19960.3 65.191 836 228 7 1 776 1 833 0.0 1021
Msa0561750 AT4G19960.4 66.214 589 170 4 214 776 1 586 0.0 753
Msa0561750 AT2G40540.1 46.667 795 377 10 28 776 1 794 0.0 683
Msa0561750 AT2G40540.5 46.667 795 377 10 28 776 1 794 0.0 683
Msa0561750 AT2G40540.4 46.667 795 377 10 28 776 1 794 0.0 683
Msa0561750 AT2G40540.2 46.667 795 377 10 28 776 1 794 0.0 683
Msa0561750 AT2G40540.3 46.667 795 377 10 28 776 1 794 0.0 683
Msa0561750 AT1G60160.1 43.866 807 412 10 3 776 29 827 0.0 671
Msa0561750 AT3G02050.1 46.271 791 380 7 27 776 3 789 0.0 670
Msa0561750 AT5G14880.1 46.803 782 372 11 34 776 5 781 0.0 669
Msa0561750 AT1G70300.1 44.529 786 395 9 28 776 1 782 0.0 657
Msa0561750 AT4G13420.1 43.687 792 410 8 4 774 7 783 0.0 652
Msa0561750 AT4G33530.1 44.870 809 399 11 4 776 58 855 0.0 648
Msa0561750 AT5G09400.1 45.548 775 391 9 30 776 87 858 0.0 631
Msa0561750 AT2G30070.1 50.000 606 288 2 42 632 18 623 0.0 629
Msa0561750 AT2G30070.1 38.961 77 47 0 700 776 636 712 1.14e-11 68.9
Msa0561750 AT4G23640.1 44.430 772 378 10 49 776 11 775 0.0 622
Msa0561750 AT4G33530.2 45.130 616 315 5 183 776 13 627 1.26e-178 526
Msa0561750 AT2G30070.2 48.805 502 245 1 143 632 2 503 3.02e-173 511
Msa0561750 AT2G30070.2 38.961 77 47 0 700 776 516 592 8.51e-12 68.9

Find 215 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCTTGGCGTCGTTTA+TGG 0.154578 4_1:-61333394 Msa0561750:CDS
ATCGGCTGTTGGTGGGATTA+AGG 0.255722 4_1:-61332091 Msa0561750:CDS
ACAAGGTATCTCTCTTCTTC+CGG 0.262164 4_1:+61329564 None:intergenic
GCTGGGGTGGTTCACATATT+AGG 0.271225 4_1:-61329165 Msa0561750:CDS
ATTCTTATTCTTGTCCTTGC+TGG 0.272064 4_1:-61332282 Msa0561750:CDS
ATTATATATATGCATTTCTT+AGG 0.280181 4_1:-61329086 Msa0561750:CDS
TGTCGCCTGGCTTGCAACTA+TGG 0.292518 4_1:+61330319 None:intergenic
TTGCTCCAATTGTCCTCCTT+TGG 0.298318 4_1:-61331833 Msa0561750:CDS
TGGCGTCGTTTATGGAGATT+TGG 0.304079 4_1:-61333386 Msa0561750:CDS
TCAGATGAATACAGTTTATA+TGG 0.316978 4_1:-61329384 Msa0561750:CDS
CTCCTTTGGTTTCTCCTAAT+AGG 0.317007 4_1:-61331819 Msa0561750:CDS
TTGCAGCAAATGACCTTTCA+TGG 0.321779 4_1:+61332349 None:intergenic
GAAAATTGCATAGCTGAAAA+TGG 0.322285 4_1:-61333848 Msa0561750:exon
CAAAGGTAGTATGTGGGATT+TGG 0.334401 4_1:-61333791 Msa0561750:CDS
GAAAATAATCTCAAACAAAA+AGG 0.335658 4_1:+61328804 None:intergenic
CTCGGGCTTGGCCCAAGTTT+AGG 0.337026 4_1:-61329735 Msa0561750:CDS
CAAGGTATCTCTCTTCTTCC+GGG 0.346404 4_1:+61329565 None:intergenic
CTTTGCATTGCTGTCACGGC+AGG 0.347095 4_1:-61330164 Msa0561750:CDS
TTGAATAACTGCAGGGATGC+TGG 0.348315 4_1:-61329183 Msa0561750:CDS
TACCATAAGCATTTCCAATC+TGG 0.350786 4_1:+61330126 None:intergenic
TGTCTGTGCCATAATGTTGC+AGG 0.356956 4_1:+61331871 None:intergenic
ATTCTTACCCCGGCTATATC+AGG 0.357397 4_1:-61332234 Msa0561750:intron
CGAAAGATGTGGTAATTCTT+AGG 0.358981 4_1:+61329528 None:intergenic
ATATTTAACATCTGTAAGTA+TGG 0.359612 4_1:-61331786 Msa0561750:CDS
TATATAGTCCAGATATCAAT+TGG 0.360279 4_1:-61330199 Msa0561750:CDS
ATATACCAATACCTCCTATT+AGG 0.365604 4_1:+61331805 None:intergenic
AACCAGATTGGAAATGCTTA+TGG 0.368806 4_1:-61330128 Msa0561750:intron
ATTATGTTTGTCTGGCATTA+CGG 0.372759 4_1:-61329813 Msa0561750:CDS
TGATATCTGGACTATATATC+TGG 0.373074 4_1:+61330204 None:intergenic
GTCTCGATGGCATGGATTCT+CGG 0.378294 4_1:-61329753 Msa0561750:CDS
TCATCGGTGCGATGCTGATT+GGG 0.380293 4_1:+61332402 None:intergenic
TTCATCGGTGCGATGCTGAT+TGG 0.380303 4_1:+61332401 None:intergenic
ATAAGGACCCAATTGATATC+TGG 0.383547 4_1:+61330191 None:intergenic
GGAACATACCATTACTCATA+TGG 0.384347 4_1:+61332058 None:intergenic
TGGGTTCCTCTTGTAATTGC+CGG 0.384804 4_1:-61329849 Msa0561750:CDS
ATGGCATGGATTCTCGGGCT+TGG 0.385857 4_1:-61329747 Msa0561750:CDS
TGTGACGGAGAGTACAAAAC+TGG 0.391621 4_1:+61334436 None:intergenic
GGTATCATGCTCAGTATAAC+AGG 0.392216 4_1:-61331678 Msa0561750:intron
GGCGTCGTTTATGGAGATTT+GGG 0.402244 4_1:-61333385 Msa0561750:CDS
GATTATCTACTCTCTTACCT+TGG 0.406143 4_1:-61333281 Msa0561750:CDS
CAAGTTCATCGCCCTCGGTT+TGG 0.406422 4_1:+61329211 None:intergenic
TCTTCATCTTTCACACCGTT+CGG 0.408337 4_1:+61333328 None:intergenic
AATGAGTCAAGTTATTCATA+AGG 0.411947 4_1:+61330792 None:intergenic
ATTGCTGTTGTAATATTAGT+TGG 0.412164 4_1:-61331903 Msa0561750:CDS
AAATAGTGATATATGTAAAC+AGG 0.422030 4_1:+61331738 None:intergenic
TTTCTCCTAATAGGAGGTAT+TGG 0.422505 4_1:-61331810 Msa0561750:CDS
CATCAAATGATTTGTGATGA+AGG 0.427920 4_1:+61328972 None:intergenic
AGAAACCAAAGGAGGACAAT+TGG 0.429550 4_1:+61331828 None:intergenic
TAGTAGTAGAATTGAGTAAG+AGG 0.430671 4_1:-61333875 Msa0561750:five_prime_UTR
TCTTCCGGGACGGTGTAAAC+AGG 0.434145 4_1:+61329579 None:intergenic
ACTCTTCGTCTTTCTTGTGC+AGG 0.434280 4_1:+61329478 None:intergenic
TATATGCATGCAAGATGTAT+TGG 0.437951 4_1:+61328661 None:intergenic
GCTGGCACCTGCATGGTAAT+CGG 0.439778 4_1:-61332264 Msa0561750:CDS
GTGTAGACTAGTCCGATTCC+TGG 0.442210 4_1:+61329699 None:intergenic
TATACATCAAAGAAGTTTGC+CGG 0.442604 4_1:-61330227 Msa0561750:CDS
TCTCGATGGCATGGATTCTC+GGG 0.451131 4_1:-61329752 Msa0561750:CDS
TCTTAAAATCTTAAACTAAC+CGG 0.453993 4_1:-61328719 Msa0561750:three_prime_UTR
GTATATACAACTTTAACTCT+AGG 0.455200 4_1:+61330245 None:intergenic
CTTCCTGCCTCTTCCTCCAT+AGG 0.455502 4_1:+61333751 None:intergenic
GTGATAACAAAGGTAGTATG+TGG 0.456986 4_1:-61333798 Msa0561750:CDS
GGCAGCCATAGTTGCAAGCC+AGG 0.457567 4_1:-61330324 Msa0561750:CDS
CTAACAGTGATATTCACATT+TGG 0.460145 4_1:+61329255 None:intergenic
TTCGAAAATCAAAACCAGAT+TGG 0.460880 4_1:-61330140 Msa0561750:CDS
TTAGGACTTGTTCGTGTACC+AGG 0.461947 4_1:-61329717 Msa0561750:CDS
CAAATGTGAATATCACTGTT+AGG 0.464701 4_1:-61329254 Msa0561750:CDS
TATTGGTGTGGCGCTGCCAC+TGG 0.464822 4_1:-61329959 Msa0561750:CDS
ATATCATGATTAAAATCATA+AGG 0.466363 4_1:+61329979 None:intergenic
CTGCCTCTTCCTCCATAGGC+TGG 0.471158 4_1:+61333755 None:intergenic
CTATGCAAAGTTGAGGTTTG+AGG 0.474374 4_1:-61328940 Msa0561750:three_prime_UTR
TGACCAGCCTATGGAGGAAG+AGG 0.478610 4_1:-61333758 Msa0561750:CDS
GAACATACCATTACTCATAT+GGG 0.479647 4_1:+61332059 None:intergenic
TCAAAGTTAATCAAGGTGGA+TGG 0.480215 4_1:-61329869 Msa0561750:CDS
ATATGTTGTTAGTTCTTCAT+CGG 0.484009 4_1:+61332386 None:intergenic
TAGCAGATTGTACTTCATAC+AGG 0.484544 4_1:-61334411 Msa0561750:intron
AGATACCTTGTAAAGAGGAT+TGG 0.486463 4_1:-61329552 Msa0561750:CDS
TTTCGATGTGTGGCACGGTA+TGG 0.488737 4_1:-61329510 Msa0561750:CDS
CGGCTTGCATATCAGAGTCT+TGG 0.492350 4_1:-61333406 Msa0561750:CDS
CCCGTCTCCGATTACCATGC+AGG 0.492534 4_1:+61332257 None:intergenic
CATTTCTTAGGAAAATATGC+AGG 0.492742 4_1:-61329074 Msa0561750:CDS
TGTACAGCTTGCATTTACTC+TGG 0.493940 4_1:-61330861 Msa0561750:CDS
TGAATAACTGCAGGGATGCT+GGG 0.494966 4_1:-61329182 Msa0561750:CDS
ATATATGTAAACAGGAGAAA+AGG 0.499936 4_1:+61331746 None:intergenic
AAGAGAGATACCTTGTAAAG+AGG 0.504738 4_1:-61329557 Msa0561750:CDS
CTTGTTCGTGTACCAGGAAT+CGG 0.505529 4_1:-61329711 Msa0561750:CDS
AAATTCAAGTTCATCGCCCT+CGG 0.506358 4_1:+61329206 None:intergenic
TAGGTCCAATCCTCTTTACA+AGG 0.508685 4_1:+61329547 None:intergenic
GTAATCTTCAAAGTTAATCA+AGG 0.509932 4_1:-61329876 Msa0561750:CDS
CACTTGCTTATCATTGATTG+TGG 0.513008 4_1:-61329919 Msa0561750:CDS
ATGGCACAGACAAAGTTAGT+TGG 0.513478 4_1:-61331860 Msa0561750:CDS
GGTTGGAGGAACGTGAATCA+TGG 0.513701 4_1:-61332314 Msa0561750:CDS
GATTCTTTGCATTGCTGTCA+CGG 0.514147 4_1:-61330168 Msa0561750:CDS
ATCAAATGATTTGTGATGAA+GGG 0.515076 4_1:+61328973 None:intergenic
ACAGAAGCTTGACCAGCCTA+TGG 0.515105 4_1:-61333767 Msa0561750:CDS
ACACGAACAAGTCCTAAACT+TGG 0.516500 4_1:+61329723 None:intergenic
CTTTGGTTTCTCCTAATAGG+AGG 0.516527 4_1:-61331816 Msa0561750:CDS
AAAGATGAAGAGGAAGTACT+TGG 0.516753 4_1:-61333316 Msa0561750:CDS
CAAGCTTAACAAACAGTGAA+AGG 0.516927 4_1:+61329433 None:intergenic
CAGCCTATGGAGGAAGAGGC+AGG 0.517760 4_1:-61333754 Msa0561750:CDS
ACAGTGATATTCACATTTGG+CGG 0.519018 4_1:+61329258 None:intergenic
CAGCAATGCAAAGAATCATA+AGG 0.522136 4_1:+61330174 None:intergenic
CACAGTTGTGATGGCAAGGA+GGG 0.523327 4_1:-61329139 Msa0561750:CDS
TTTAGAAGAGGTGGAAAACA+AGG 0.524364 4_1:-61331717 Msa0561750:CDS
ACCTGCATGGTAATCGGAGA+CGG 0.529408 4_1:-61332258 Msa0561750:CDS
AAACAAGGATGGACTTCCCT+TGG 0.530115 4_1:-61331702 Msa0561750:CDS
GCCGTTCTACCTTCCATGAA+AGG 0.530220 4_1:-61332362 Msa0561750:CDS
CAGTTTATATGGAGGACAGC+AGG 0.530247 4_1:-61329373 Msa0561750:CDS
GTATGCAGCTTGTCCAGAAT+AGG 0.531509 4_1:+61330814 None:intergenic
ATGTTGCAGTTATTGTCGCC+TGG 0.531764 4_1:+61330306 None:intergenic
GCATATGTACCTGATATAGC+CGG 0.535287 4_1:+61332225 None:intergenic
CTGAGACCGGAAAATGAGAT+AGG 0.535427 4_1:+61330885 None:intergenic
AACCTCAACTTTGCATAGGA+TGG 0.539090 4_1:+61328945 None:intergenic
CAAAGTTAATCAAGGTGGAT+GGG 0.539107 4_1:-61329868 Msa0561750:CDS
TGTTAAGCTTGAATCTATGA+TGG 0.539727 4_1:-61329421 Msa0561750:CDS
ATTAAGCAAGCCCTTGCTCA+TGG 0.540837 4_1:-61330275 Msa0561750:CDS
AGCAAGGACAAGAATAAGAA+TGG 0.541082 4_1:+61332284 None:intergenic
TGTCCTTGCTGGCACCTGCA+TGG 0.541400 4_1:-61332271 Msa0561750:CDS
CATATGTACCTGATATAGCC+GGG 0.543217 4_1:+61332226 None:intergenic
ATCTGGACTATATATCTGGC+CGG 0.544750 4_1:+61330208 None:intergenic
AACATCTGTAAGTATGGAAG+CGG 0.546719 4_1:-61331780 Msa0561750:CDS
TGCCATCCTATGCAAAGTTG+AGG 0.546841 4_1:-61328947 Msa0561750:three_prime_UTR
GCAAGCTGTACAGCTGAGAC+CGG 0.546898 4_1:+61330872 None:intergenic
CAAGGATGGACTTCCCTTGG+TGG 0.548086 4_1:-61331699 Msa0561750:CDS
TTGTGAAAATTGAGTGCCGC+CGG 0.551017 4_1:+61328700 None:intergenic
TATATACAACTTTAACTCTA+GGG 0.551474 4_1:+61330246 None:intergenic
ACCTTTCATGGAAGGTAGAA+CGG 0.553074 4_1:+61332361 None:intergenic
GGTGCGATGCTGATTGGGAA+TGG 0.553849 4_1:+61332407 None:intergenic
CATGAGAGTCTCTTAAATGT+TGG 0.554708 4_1:-61329024 Msa0561750:CDS
TTTCTGCATTGTTGATTCTG+CGG 0.554902 4_1:-61333426 Msa0561750:CDS
GAAAACAACAACAGAATGGA+TGG 0.557910 4_1:+61329620 None:intergenic
TGATTTGTGATGAAGGGAAT+GGG 0.558978 4_1:+61328979 None:intergenic
ATGATTTGTGATGAAGGGAA+TGG 0.563113 4_1:+61328978 None:intergenic
AGGTCCTGCGGTCAAGTAAG+TGG 0.564330 4_1:-61329234 Msa0561750:CDS
AGGAAGAGGCAGGAAGACTC+AGG 0.565443 4_1:-61333744 Msa0561750:CDS
TTCTACAATATATTTCCGAA+CGG 0.568283 4_1:-61333343 Msa0561750:CDS
TAGGGAAACAACCATGAGCA+AGG 0.568381 4_1:+61330264 None:intergenic
TTTGCATTGCTGTCACGGCA+GGG 0.568672 4_1:-61330163 Msa0561750:CDS
CCTTCCTGTTTACACCGTCC+CGG 0.569084 4_1:-61329583 Msa0561750:CDS
TTGGCCACTTACTTGACCGC+AGG 0.570429 4_1:+61329230 None:intergenic
GCTGAAAATGGCTTCAAGAG+TGG 0.573798 4_1:-61333836 Msa0561750:exon
TATATTGTAGAAAACATACA+AGG 0.574457 4_1:+61333354 None:intergenic
AATCAGCCCCATATGAGTAA+TGG 0.574491 4_1:-61332066 Msa0561750:intron
CAACAGAATGGATGGCTGGT+AGG 0.574816 4_1:+61329628 None:intergenic
AGCAAATGACCTTTCATGGA+AGG 0.576121 4_1:+61332353 None:intergenic
ACAACAACAGAATGGATGGC+TGG 0.578367 4_1:+61329624 None:intergenic
GAATAGGCTAAAAGAAGGCA+AGG 0.578682 4_1:+61330830 None:intergenic
TAACTGCAGGGATGCTGGGG+TGG 0.578720 4_1:-61329178 Msa0561750:CDS
CGGAGACGGGATTCTTACCC+CGG 0.579878 4_1:-61332244 Msa0561750:CDS
AAGAGTGGACACTGATGAAG+AGG 0.581426 4_1:-61333821 Msa0561750:CDS
GTATCTCTCTTCTTCCGGGA+CGG 0.583221 4_1:+61329569 None:intergenic
GTCCAGAATAGGCTAAAAGA+AGG 0.583432 4_1:+61330825 None:intergenic
GTCTACACAGAACTTGCAAG+TGG 0.583444 4_1:-61329684 Msa0561750:CDS
AGAATGGATGGCTGGTAGGT+TGG 0.583797 4_1:+61329632 None:intergenic
CCTGCATGGTAATCGGAGAC+GGG 0.583917 4_1:-61332257 Msa0561750:CDS
ATTAGGAAACACAGTTGTGA+TGG 0.587624 4_1:-61329148 Msa0561750:CDS
GTTCATGTGAAGGAAGATTG+TGG 0.588609 4_1:+61334589 None:intergenic
GAATAACTGCAGGGATGCTG+GGG 0.589642 4_1:-61329181 Msa0561750:CDS
GAAACACAGTTGTGATGGCA+AGG 0.591010 4_1:-61329143 Msa0561750:CDS
GAAGAGGTGGAAAACAAGGA+TGG 0.591042 4_1:-61331713 Msa0561750:CDS
GAACAACATCACCTTGCTTG+CGG 0.591857 4_1:-61328903 Msa0561750:three_prime_UTR
GTGATATTCACATTTGGCGG+CGG 0.592182 4_1:+61329261 None:intergenic
ATGCAAGATTGTTCATGTGA+AGG 0.593342 4_1:+61334579 None:intergenic
GAACGGTGTGAAAGATGAAG+AGG 0.595547 4_1:-61333326 Msa0561750:CDS
AGCACTGATTACCGCAAGCA+AGG 0.598133 4_1:+61328892 None:intergenic
CAAGTAAGTGGCCAAACCGA+GGG 0.598214 4_1:-61329222 Msa0561750:CDS
ATATAGTCCAGATATCAATT+GGG 0.598472 4_1:-61330198 Msa0561750:CDS
TGATAACAAAGGTAGTATGT+GGG 0.599126 4_1:-61333797 Msa0561750:CDS
CTCAAACCTCAACTTTGCAT+AGG 0.599492 4_1:+61328941 None:intergenic
GACCGGAAAATGAGATAGGT+CGG 0.605268 4_1:+61330889 None:intergenic
TTACCACATCTTTCGATGTG+TGG 0.605821 4_1:-61329520 Msa0561750:CDS
TCAAGTAAGTGGCCAAACCG+AGG 0.608655 4_1:-61329223 Msa0561750:CDS
GTACAATCTGCTACTTGTGA+CGG 0.612482 4_1:+61334421 None:intergenic
CACGAACAAGTCCTAAACTT+GGG 0.614583 4_1:+61329724 None:intergenic
ATAGTAAAGTCTCGATGGCA+TGG 0.620677 4_1:-61329761 Msa0561750:CDS
CGACTAAAATGACATAACTG+TGG 0.623219 4_1:-61328782 Msa0561750:three_prime_UTR
AATATCACTGTTAGGTCCTG+CGG 0.624494 4_1:-61329246 Msa0561750:CDS
AAGCACGACTTCTTCGAATG+TGG 0.624780 4_1:-61329328 Msa0561750:CDS
AATCAATGATAAGCAAGTGA+AGG 0.625371 4_1:+61329923 None:intergenic
ATTTCTTAGGAAAATATGCA+GGG 0.625694 4_1:-61329073 Msa0561750:CDS
ATACGAAAACAACAACAGAA+TGG 0.631139 4_1:+61329616 None:intergenic
ACTAATTGTGATGCTTCACG+TGG 0.632596 4_1:-61328639 Msa0561750:three_prime_UTR
AACACTCCGGCAATTACAAG+AGG 0.633389 4_1:+61329843 None:intergenic
ATCTTCAAAGTTAATCAAGG+TGG 0.637689 4_1:-61329873 Msa0561750:CDS
AATGCATAGTAAAGTCTCGA+TGG 0.638063 4_1:-61329766 Msa0561750:CDS
AAGCTTGAATCTATGATGGA+AGG 0.641141 4_1:-61329417 Msa0561750:CDS
AGGGAAACAACCATGAGCAA+GGG 0.643819 4_1:+61330265 None:intergenic
GAAGCTTGACCAGCCTATGG+AGG 0.647530 4_1:-61333764 Msa0561750:CDS
ACATCTTTCGATGTGTGGCA+CGG 0.647935 4_1:-61329515 Msa0561750:CDS
AACATACCATTACTCATATG+GGG 0.653081 4_1:+61332060 None:intergenic
GATGAATACAGTTTATATGG+AGG 0.656772 4_1:-61329381 Msa0561750:CDS
CCGGGACGGTGTAAACAGGA+AGG 0.657637 4_1:+61329583 None:intergenic
GATGAATTTATTAGGGACGG+AGG 0.657712 4_1:-61330921 Msa0561750:intron
TTACCATGCAGGTGCCAGCA+AGG 0.657855 4_1:+61332268 None:intergenic
GATGAAGAGGGTGATAACAA+AGG 0.665526 4_1:-61333808 Msa0561750:CDS
TTATATGGAGGACAGCAGGA+TGG 0.666470 4_1:-61329369 Msa0561750:CDS
ACACAGTTGTGATGGCAAGG+AGG 0.669872 4_1:-61329140 Msa0561750:CDS
AGAGCAAATGACAATGGACA+AGG 0.674340 4_1:-61333226 Msa0561750:intron
GTGTTAAGAGCAAATGACAA+TGG 0.677304 4_1:-61333232 Msa0561750:CDS
TTCGTTAACAGGTACTGCAG+TGG 0.679357 4_1:-61330027 Msa0561750:intron
GTGCCACACATCGAAAGATG+TGG 0.686236 4_1:+61329517 None:intergenic
GTGATGAAATGAGAAAAGAT+CGG 0.689117 4_1:+61329654 None:intergenic
TACTGAGCATGATACCACCA+AGG 0.690342 4_1:+61331685 None:intergenic
ACTGAGCATGATACCACCAA+GGG 0.691706 4_1:+61331686 None:intergenic
CTCCTATTAGGAGAAACCAA+AGG 0.694794 4_1:+61331817 None:intergenic
AGAGTGGACACTGATGAAGA+GGG 0.700617 4_1:-61333820 Msa0561750:CDS
CTATTAGGAGAAACCAAAGG+AGG 0.702161 4_1:+61331820 None:intergenic
ATGAAATGAGAAAAGATCGG+TGG 0.702922 4_1:+61329657 None:intergenic
TAAAATCTTAAACTAACCGG+CGG 0.704214 4_1:-61328716 Msa0561750:three_prime_UTR
GTGACGGAGAGTACAAAACT+GGG 0.706391 4_1:+61334437 None:intergenic
ATATTGTAGAAAACATACAA+GGG 0.712231 4_1:+61333355 None:intergenic
TTTGTGATGAAGGGAATGGG+AGG 0.712327 4_1:+61328982 None:intergenic
ATATGTACCTGATATAGCCG+GGG 0.713157 4_1:+61332227 None:intergenic
ATATTTGAGAAGAGGCACCA+AGG 0.717350 4_1:+61333264 None:intergenic
ACATTTAAGAGACTCTCATG+AGG 0.718347 4_1:+61329027 None:intergenic
GATGGCGTGTTGAATAACAA+CGG 0.731429 4_1:-61329351 Msa0561750:CDS
AGGCGAGTACAAGAATCCAG+TGG 0.751362 4_1:+61329943 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTTTTTGAAAAAA+TGG - chr4_1:61329280-61329299 Msa0561750:CDS 10.0%
!!! TCATATATACAATTTTTTAT+AGG + chr4_1:61330661-61330680 None:intergenic 10.0%
!!! AATTTATTTTGCTTTATATA+TGG + chr4_1:61332028-61332047 None:intergenic 10.0%
!!! AAAGAATATTACTATTTTTT+GGG - chr4_1:61332094-61332113 Msa0561750:CDS 10.0%
!! AAAAAAATTATTGAATAAGT+AGG + chr4_1:61332274-61332293 None:intergenic 10.0%
!! ATAAACATAAATTAAGATTG+AGG + chr4_1:61329146-61329165 None:intergenic 15.0%
!! CTAAAAAAAATCAACAAAAT+TGG + chr4_1:61329191-61329210 None:intergenic 15.0%
!! AAATTAAAACACATTTATAC+TGG + chr4_1:61329228-61329247 None:intergenic 15.0%
!! AACTTTGACAAAAAAAAAAA+AGG + chr4_1:61329373-61329392 None:intergenic 15.0%
!!! TGAAATATTGTTTTTTCTTA+AGG - chr4_1:61329446-61329465 Msa0561750:CDS 15.0%
!!! GAAATATTGTTTTTTCTTAA+GGG - chr4_1:61329447-61329466 Msa0561750:CDS 15.0%
!!! TCAATTGTTTTCTAAATTTT+TGG - chr4_1:61330145-61330164 Msa0561750:CDS 15.0%
!!! CTTTTTTCTTTTTACTTTTT+TGG - chr4_1:61330588-61330607 Msa0561750:intron 15.0%
!!! CTTTGATTTTTTTTGTTTAT+TGG + chr4_1:61332078-61332097 None:intergenic 15.0%
!!! CAAAGAATATTACTATTTTT+TGG - chr4_1:61332093-61332112 Msa0561750:CDS 15.0%
!!! TTCAATAATTTTTTTCTCTT+TGG - chr4_1:61332279-61332298 Msa0561750:CDS 15.0%
!!! TCAATAATTTTTTTCTCTTT+GGG - chr4_1:61332280-61332299 Msa0561750:CDS 15.0%
!!! ACAATATTTTTAAACTCTAT+GGG + chr4_1:61332838-61332857 None:intergenic 15.0%
!!! TACAATATTTTTAAACTCTA+TGG + chr4_1:61332839-61332858 None:intergenic 15.0%
!!! TTTCTCTTATATTTTTCTAA+TGG - chr4_1:61332917-61332936 Msa0561750:intron 15.0%
!! ATATCATGATTAAAATCATA+AGG + chr4_1:61333370-61333389 None:intergenic 15.0%
!!! TATGATTTTAATCATGATAT+TGG - chr4_1:61333370-61333389 Msa0561750:CDS 15.0%
!! ATTATATATATGCATTTCTT+AGG - chr4_1:61334260-61334279 Msa0561750:intron 15.0%
!!! TTTTTATTTTCACAATCAAG+TGG - chr4_1:61329016-61329035 Msa0561750:CDS 20.0%
!!! TTTTATTTTCACAATCAAGT+GGG - chr4_1:61329017-61329036 Msa0561750:CDS 20.0%
!!! TGATTTTTTTTAGTACTCTA+AGG - chr4_1:61329198-61329217 Msa0561750:CDS 20.0%
!! TTGAAAATTCCATTAATCTA+TGG + chr4_1:61329345-61329364 None:intergenic 20.0%
!! AAAATCATAATCACAAACAT+TGG + chr4_1:61329770-61329789 None:intergenic 20.0%
!! ATATTGTAGAAAACATACAA+GGG + chr4_1:61329994-61330013 None:intergenic 20.0%
!! TATATTGTAGAAAACATACA+AGG + chr4_1:61329995-61330014 None:intergenic 20.0%
!! ATAAAAACATATTTGAGAAG+AGG + chr4_1:61330093-61330112 None:intergenic 20.0%
!!! GTTAATATTTGCATCTTTTA+TGG - chr4_1:61330286-61330305 Msa0561750:CDS 20.0%
!! AAAAAAGGATGGTTATATTA+GGG - chr4_1:61330479-61330498 Msa0561750:intron 20.0%
!!! ATTTTAATTACAGTTATGGA+AGG + chr4_1:61330774-61330793 None:intergenic 20.0%
!!! GAGTATTTTAATTACAGTTA+TGG + chr4_1:61330778-61330797 None:intergenic 20.0%
!!! TGTTTTTAACGAATTTAAGT+TGG - chr4_1:61331371-61331390 Msa0561750:intron 20.0%
!!! GTTTTTAACGAATTTAAGTT+GGG - chr4_1:61331372-61331391 Msa0561750:intron 20.0%
!! ATATTTAACATCTGTAAGTA+TGG - chr4_1:61331560-61331579 Msa0561750:intron 20.0%
!! AAATAGTGATATATGTAAAC+AGG + chr4_1:61331611-61331630 None:intergenic 20.0%
!!! ATATATCACTATTTTAGAAG+AGG - chr4_1:61331617-61331636 Msa0561750:intron 20.0%
!! TCAATGTAATTATTAGTGTT+GGG - chr4_1:61331726-61331745 Msa0561750:CDS 20.0%
!! TAGCCAACTATATATTATTA+GGG - chr4_1:61332227-61332246 Msa0561750:intron 20.0%
!!! CAATAATTTTTTTCTCTTTG+GGG - chr4_1:61332281-61332300 Msa0561750:CDS 20.0%
!!! ACTTTTGGATGAATTTATTA+GGG - chr4_1:61332418-61332437 Msa0561750:CDS 20.0%
!! TATATACAACTTTAACTCTA+GGG + chr4_1:61333103-61333122 None:intergenic 20.0%
!! AATTGAGAGAAAATATTCAT+CGG + chr4_1:61333272-61333291 None:intergenic 20.0%
!!! TTTTTATCATTATGTTTGTC+TGG - chr4_1:61333525-61333544 Msa0561750:intron 20.0%
!! GAAAATAATCTCAAACAAAA+AGG + chr4_1:61334545-61334564 None:intergenic 20.0%
!! TCTTAAAATCTTAAACTAAC+CGG - chr4_1:61334627-61334646 Msa0561750:five_prime_UTR 20.0%
!!! TTTATTTTCACAATCAAGTG+GGG - chr4_1:61329018-61329037 Msa0561750:CDS 25.0%
! TTTCACTTTCCATAGATTAA+TGG - chr4_1:61329333-61329352 Msa0561750:CDS 25.0%
! TGATATACTACTATAGTCTA+TGG - chr4_1:61329646-61329665 Msa0561750:CDS 25.0%
! CCAAAAAGAAAATCAATATG+AGG + chr4_1:61329692-61329711 None:intergenic 25.0%
!!! CCTCATATTGATTTTCTTTT+TGG - chr4_1:61329689-61329708 Msa0561750:CDS 25.0%
!!! TTTCTTTTTGGTAGACAAAA+TGG - chr4_1:61329701-61329720 Msa0561750:CDS 25.0%
! TTCTACAATATATTTCCGAA+CGG - chr4_1:61330003-61330022 Msa0561750:CDS 25.0%
! TCATTACAAATGGAAACAAA+AGG + chr4_1:61330241-61330260 None:intergenic 25.0%
! AACTACACTAAATATACACT+GGG + chr4_1:61330269-61330288 None:intergenic 25.0%
! TAACTACACTAAATATACAC+TGG + chr4_1:61330270-61330289 None:intergenic 25.0%
! TGCCAGATACAAATTTAAAA+AGG - chr4_1:61330316-61330335 Msa0561750:CDS 25.0%
! GCCAGATACAAATTTAAAAA+GGG - chr4_1:61330317-61330336 Msa0561750:CDS 25.0%
!! TCCCTTTTTAAATTTGTATC+TGG + chr4_1:61330321-61330340 None:intergenic 25.0%
! GAAAAAAGGATGGTTATATT+AGG - chr4_1:61330478-61330497 Msa0561750:intron 25.0%
! TATTTCCCTGTTCTAATATA+GGG - chr4_1:61330512-61330531 Msa0561750:intron 25.0%
! TATAACCCTATATTAGAACA+GGG + chr4_1:61330520-61330539 None:intergenic 25.0%
! TTATAACCCTATATTAGAAC+AGG + chr4_1:61330521-61330540 None:intergenic 25.0%
! AAAAAAGAAATTGCCTCTAA+AGG + chr4_1:61330575-61330594 None:intergenic 25.0%
!! ATATGTTGTTAGTTCTTCAT+CGG + chr4_1:61330963-61330982 None:intergenic 25.0%
! TAAGAATCTCTTCAAATAGA+TGG + chr4_1:61331212-61331231 None:intergenic 25.0%
! TAAAACTACAATGGAAGATA+TGG + chr4_1:61331236-61331255 None:intergenic 25.0%
!!! ATCTTCCATTGTAGTTTTAT+CGG - chr4_1:61331237-61331256 Msa0561750:intron 25.0%
!! TATTTTTCTATCACTATGCA+TGG - chr4_1:61331338-61331357 Msa0561750:intron 25.0%
! TTGAAAAGCTTCTTTATCTT+TGG - chr4_1:61331400-61331419 Msa0561750:intron 25.0%
!! ATTGCTGTTGTAATATTAGT+TGG - chr4_1:61331443-61331462 Msa0561750:intron 25.0%
! ATATATGTAAACAGGAGAAA+AGG + chr4_1:61331603-61331622 None:intergenic 25.0%
! ACTAATAATTACATTGAGGA+AGG + chr4_1:61331723-61331742 None:intergenic 25.0%
! CAACACTAATAATTACATTG+AGG + chr4_1:61331727-61331746 None:intergenic 25.0%
! CTCAATGTAATTATTAGTGT+TGG - chr4_1:61331725-61331744 Msa0561750:CDS 25.0%
! AAAGATATGAAAAACACAAG+CGG + chr4_1:61331944-61331963 None:intergenic 25.0%
!!! CTTACTTTTCAATCAAACTT+TGG + chr4_1:61332162-61332181 None:intergenic 25.0%
! TTTCTACCTAAAATTGAACT+TGG - chr4_1:61332202-61332221 Msa0561750:intron 25.0%
! TTCTACCTAAAATTGAACTT+GGG - chr4_1:61332203-61332222 Msa0561750:intron 25.0%
! GTAGCCAACTATATATTATT+AGG - chr4_1:61332226-61332245 Msa0561750:intron 25.0%
! AGCCAACTATATATTATTAG+GGG - chr4_1:61332228-61332247 Msa0561750:intron 25.0%
! TACCCCTAATAATATATAGT+TGG + chr4_1:61332233-61332252 None:intergenic 25.0%
! AAAATCATTAACAGATGAAG+TGG - chr4_1:61332369-61332388 Msa0561750:CDS 25.0%
!! GACTTTTGGATGAATTTATT+AGG - chr4_1:61332417-61332436 Msa0561750:CDS 25.0%
! AATGAGTCAAGTTATTCATA+AGG + chr4_1:61332557-61332576 None:intergenic 25.0%
! TATATTGAAATCATCATGTC+TGG - chr4_1:61332627-61332646 Msa0561750:intron 25.0%
! GTATATACAACTTTAACTCT+AGG + chr4_1:61333104-61333123 None:intergenic 25.0%
! TATATAGTCCAGATATCAAT+TGG - chr4_1:61333147-61333166 Msa0561750:intron 25.0%
! ATATAGTCCAGATATCAATT+GGG - chr4_1:61333148-61333167 Msa0561750:intron 25.0%
! TGAATTTACAATTCGTTAAC+AGG - chr4_1:61333308-61333327 Msa0561750:CDS 25.0%
!! TTTTAATCATGATATTGGTG+TGG - chr4_1:61333375-61333394 Msa0561750:CDS 25.0%
! GTAATCTTCAAAGTTAATCA+AGG - chr4_1:61333470-61333489 Msa0561750:intron 25.0%
! CATAATGATAAAAAACACTC+CGG + chr4_1:61333519-61333538 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG - chr4_1:61333962-61333981 Msa0561750:intron 25.0%
!! TTGAATTTTTGAATAACTGC+AGG - chr4_1:61334155-61334174 Msa0561750:intron 25.0%
!! TGAATTTTTGAATAACTGCA+GGG - chr4_1:61334156-61334175 Msa0561750:intron 25.0%
! ATTTCTTAGGAAAATATGCA+GGG - chr4_1:61334273-61334292 Msa0561750:intron 25.0%
!! ATCAAATGATTTGTGATGAA+GGG + chr4_1:61334376-61334395 None:intergenic 25.0%
! TCAAACAAAAAGGCTATTAA+CGG + chr4_1:61334535-61334554 None:intergenic 25.0%
!!! GGTTAGTTTAAGATTTTAAG+AGG + chr4_1:61334628-61334647 None:intergenic 25.0%
CATAAATTAAGATTGAGGAC+TGG + chr4_1:61329141-61329160 None:intergenic 30.0%
TAGTAGTAGAATTGAGTAAG+AGG - chr4_1:61329471-61329490 Msa0561750:CDS 30.0%
GAAAATTGCATAGCTGAAAA+TGG - chr4_1:61329498-61329517 Msa0561750:CDS 30.0%
TGATAACAAAGGTAGTATGT+GGG - chr4_1:61329549-61329568 Msa0561750:CDS 30.0%
ATTAGTGCATCAGTAAAACA+CGG + chr4_1:61329829-61329848 None:intergenic 30.0%
TAAGCTAATATGTAAGCTCT+TGG - chr4_1:61329848-61329867 Msa0561750:CDS 30.0%
ATATGTAAGCTCTTGGAATT+TGG - chr4_1:61329855-61329874 Msa0561750:CDS 30.0%
TAATCAATAGCATGCTATAG+TGG - chr4_1:61330361-61330380 Msa0561750:intron 30.0%
TGCTAAATGCTTCAGAAAAA+AGG - chr4_1:61330464-61330483 Msa0561750:intron 30.0%
AAATGCTTCAGAAAAAAGGA+TGG - chr4_1:61330468-61330487 Msa0561750:intron 30.0%
GTATTTCCCTGTTCTAATAT+AGG - chr4_1:61330511-61330530 Msa0561750:intron 30.0%
!! TAGTTTTACTAAGCCTTTAG+AGG - chr4_1:61330559-61330578 Msa0561750:intron 30.0%
!!! GTGCATAGTTTTGTATAGAA+TGG - chr4_1:61330697-61330716 Msa0561750:intron 30.0%
TTGCTGCAAAAACTAAAAGA+TGG - chr4_1:61331011-61331030 Msa0561750:intron 30.0%
TGCAAAAACTAAAAGATGGT+TGG - chr4_1:61331015-61331034 Msa0561750:intron 30.0%
AAAAACTAAAAGATGGTTGG+AGG - chr4_1:61331018-61331037 Msa0561750:intron 30.0%
AACATACCATTACTCATATG+GGG + chr4_1:61331289-61331308 None:intergenic 30.0%
GAACATACCATTACTCATAT+GGG + chr4_1:61331290-61331309 None:intergenic 30.0%
ATATACCAATACCTCCTATT+AGG + chr4_1:61331544-61331563 None:intergenic 30.0%
!! TATCACTATTTTAGAAGAGG+TGG - chr4_1:61331620-61331639 Msa0561750:intron 30.0%
TGTATTTAAGTACTACAGTC+TGG + chr4_1:61331818-61331837 None:intergenic 30.0%
!! TAATGGAAAGGTATTGCATT+CGG - chr4_1:61331869-61331888 Msa0561750:CDS 30.0%
CAATATTTAACCATGGAGTT+CGG + chr4_1:61331913-61331932 None:intergenic 30.0%
! AAGCTAGCAAAATTTTCATG+AGG - chr4_1:61331999-61332018 Msa0561750:intron 30.0%
TCTACCTAAAATTGAACTTG+GGG - chr4_1:61332204-61332223 Msa0561750:intron 30.0%
TTGGATGAATTTATTAGGGA+CGG - chr4_1:61332422-61332441 Msa0561750:CDS 30.0%
! GCTTTTTATCTTTCTATTCC+AGG - chr4_1:61332585-61332604 Msa0561750:intron 30.0%
TAGGTAAGAATCAGAGAAAA+AGG + chr4_1:61332745-61332764 None:intergenic 30.0%
! TTTTCTCTGATTCTTACCTA+TGG - chr4_1:61332745-61332764 Msa0561750:intron 30.0%
GACTAACATGTTAATACCAT+AGG + chr4_1:61332764-61332783 None:intergenic 30.0%
ACATCAGAATAGAAAACTGA+GGG - chr4_1:61332880-61332899 Msa0561750:intron 30.0%
ATCAACATCTAAGTGTCTAA+TGG + chr4_1:61332948-61332967 None:intergenic 30.0%
! GTTTTGCAGAAAGAATATAC+TGG - chr4_1:61332976-61332995 Msa0561750:intron 30.0%
TATACATCAAAGAAGTTTGC+CGG - chr4_1:61333119-61333138 Msa0561750:intron 30.0%
TGATATCTGGACTATATATC+TGG + chr4_1:61333145-61333164 None:intergenic 30.0%
TTCGAAAATCAAAACCAGAT+TGG - chr4_1:61333206-61333225 Msa0561750:intron 30.0%
AATCAATGATAAGCAAGTGA+AGG + chr4_1:61333426-61333445 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG - chr4_1:61333473-61333492 Msa0561750:intron 30.0%
ATTATGTTTGTCTGGCATTA+CGG - chr4_1:61333533-61333552 Msa0561750:intron 30.0%
GTGATGAAATGAGAAAAGAT+CGG + chr4_1:61333695-61333714 None:intergenic 30.0%
ATACGAAAACAACAACAGAA+TGG + chr4_1:61333733-61333752 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG - chr4_1:61333925-61333944 Msa0561750:intron 30.0%
GATGAATACAGTTTATATGG+AGG - chr4_1:61333965-61333984 Msa0561750:intron 30.0%
CTAACAGTGATATTCACATT+TGG + chr4_1:61334094-61334113 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG - chr4_1:61334092-61334111 Msa0561750:intron 30.0%
CATTTCTTAGGAAAATATGC+AGG - chr4_1:61334272-61334291 Msa0561750:intron 30.0%
! CATCAAATGATTTGTGATGA+AGG + chr4_1:61334377-61334396 None:intergenic 30.0%
!!! TGCTAGAATCGACTTTTTTT+TGG - chr4_1:61334473-61334492 Msa0561750:five_prime_UTR 30.0%
TAAAATCTTAAACTAACCGG+CGG - chr4_1:61334630-61334649 Msa0561750:five_prime_UTR 30.0%
TATATGCATGCAAGATGTAT+TGG + chr4_1:61334688-61334707 None:intergenic 30.0%
ATGCAAGATTGTTCATGTGA+AGG + chr4_1:61328770-61328789 None:intergenic 35.0%
TAGCAGATTGTACTTCATAC+AGG - chr4_1:61328935-61328954 Msa0561750:three_prime_UTR 35.0%
!! TGTTATCTGATTCTGAAGCA+AGG + chr4_1:61328965-61328984 None:intergenic 35.0%
GTGATAACAAAGGTAGTATG+TGG - chr4_1:61329548-61329567 Msa0561750:CDS 35.0%
!! TTTCTGCATTGTTGATTCTG+CGG - chr4_1:61329920-61329939 Msa0561750:CDS 35.0%
!! AAAGATGAAGAGGAAGTACT+TGG - chr4_1:61330030-61330049 Msa0561750:intron 35.0%
GATTATCTACTCTCTTACCT+TGG - chr4_1:61330065-61330084 Msa0561750:intron 35.0%
GTGTTAAGAGCAAATGACAA+TGG - chr4_1:61330114-61330133 Msa0561750:intron 35.0%
ATTCCCTTTGTACAATCTCA+AGG + chr4_1:61330172-61330191 None:intergenic 35.0%
ACAAATGGAAACAAAAGGAG+TGG + chr4_1:61330236-61330255 None:intergenic 35.0%
CTGGGAATCATCATTACAAA+TGG + chr4_1:61330251-61330270 None:intergenic 35.0%
! GCATTTAGCAGTTGCAATTT+TGG + chr4_1:61330454-61330473 None:intergenic 35.0%
GTATATCAGTTACCTAGTCA+TGG + chr4_1:61330639-61330658 None:intergenic 35.0%
AAAACTGACATTTGTAGAGC+AGG - chr4_1:61330866-61330885 Msa0561750:CDS 35.0%
! TGGTTTTTATCTTTGCGTGT+CGG + chr4_1:61330922-61330941 None:intergenic 35.0%
AGCAAGGACAAGAATAAGAA+TGG + chr4_1:61331065-61331084 None:intergenic 35.0%
ATTCTTATTCTTGTCCTTGC+TGG - chr4_1:61331064-61331083 Msa0561750:intron 35.0%
! ACTAATTAGCTTCAGAGAGA+AGG + chr4_1:61331146-61331165 None:intergenic 35.0%
AACAGCCGATAAAACTACAA+TGG + chr4_1:61331245-61331264 None:intergenic 35.0%
!!! ATTGTAGTTTTATCGGCTGT+TGG - chr4_1:61331244-61331263 Msa0561750:intron 35.0%
GGAACATACCATTACTCATA+TGG + chr4_1:61331291-61331310 None:intergenic 35.0%
AATTGTCTTGCTACAGAAGT+AGG + chr4_1:61331312-61331331 None:intergenic 35.0%
GCTTCTTTATCTTTGGATAC+AGG - chr4_1:61331407-61331426 Msa0561750:intron 35.0%
TTTATCTTTGGATACAGGTG+TGG - chr4_1:61331412-61331431 Msa0561750:intron 35.0%
!! TTTTTCAGCCTGCAACATTA+TGG - chr4_1:61331467-61331486 Msa0561750:intron 35.0%
! TTTCTCCTAATAGGAGGTAT+TGG - chr4_1:61331536-61331555 Msa0561750:intron 35.0%
AACATCTGTAAGTATGGAAG+CGG - chr4_1:61331566-61331585 Msa0561750:intron 35.0%
TTTAGAAGAGGTGGAAAACA+AGG - chr4_1:61331629-61331648 Msa0561750:intron 35.0%
GAGCACACAATATTTAACCA+TGG + chr4_1:61331920-61331939 None:intergenic 35.0%
! CTAGCAAAATTTTCATGAGG+TGG - chr4_1:61332002-61332021 Msa0561750:intron 35.0%
TACCAATTGTTAGAACAGCA+GGG + chr4_1:61332343-61332362 None:intergenic 35.0%
ATACCAATTGTTAGAACAGC+AGG + chr4_1:61332344-61332363 None:intergenic 35.0%
! TTTTTGTCCTTGACGACTTT+TGG - chr4_1:61332403-61332422 Msa0561750:CDS 35.0%
AATTCATCCAAAAGTCGTCA+AGG + chr4_1:61332413-61332432 None:intergenic 35.0%
AGTAAAAAGTTCAGCTAACC+TGG + chr4_1:61332606-61332625 None:intergenic 35.0%
ACACTGACACTTTAGATTGA+AGG - chr4_1:61332657-61332676 Msa0561750:intron 35.0%
! TTCTGATGTGTTGATATGCT+TGG + chr4_1:61332869-61332888 None:intergenic 35.0%
CACATCAGAATAGAAAACTG+AGG - chr4_1:61332879-61332898 Msa0561750:intron 35.0%
ATAAGGACCCAATTGATATC+TGG + chr4_1:61333158-61333177 None:intergenic 35.0%
CAGCAATGCAAAGAATCATA+AGG + chr4_1:61333175-61333194 None:intergenic 35.0%
AACCAGATTGGAAATGCTTA+TGG - chr4_1:61333218-61333237 Msa0561750:intron 35.0%
TACCATAAGCATTTCCAATC+TGG + chr4_1:61333223-61333242 None:intergenic 35.0%
! CACTTGCTTATCATTGATTG+TGG - chr4_1:61333427-61333446 Msa0561750:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG - chr4_1:61333477-61333496 Msa0561750:intron 35.0%
CAAAGTTAATCAAGGTGGAT+GGG - chr4_1:61333478-61333497 Msa0561750:intron 35.0%
AATGCATAGTAAAGTCTCGA+TGG - chr4_1:61333580-61333599 Msa0561750:intron 35.0%
ATGAAATGAGAAAAGATCGG+TGG + chr4_1:61333692-61333711 None:intergenic 35.0%
GAAAACAACAACAGAATGGA+TGG + chr4_1:61333729-61333748 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG - chr4_1:61333789-61333808 Msa0561750:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG - chr4_1:61333794-61333813 Msa0561750:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG + chr4_1:61333821-61333840 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG + chr4_1:61333916-61333935 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG - chr4_1:61333929-61333948 Msa0561750:intron 35.0%
ACAGTGATATTCACATTTGG+CGG + chr4_1:61334091-61334110 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG - chr4_1:61334198-61334217 Msa0561750:intron 35.0%
ACATTTAAGAGACTCTCATG+AGG + chr4_1:61334322-61334341 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG - chr4_1:61334322-61334341 Msa0561750:intron 35.0%
! TGATTTGTGATGAAGGGAAT+GGG + chr4_1:61334370-61334389 None:intergenic 35.0%
! ATGATTTGTGATGAAGGGAA+TGG + chr4_1:61334371-61334390 None:intergenic 35.0%
CGACTAAAATGACATAACTG+TGG - chr4_1:61334564-61334583 Msa0561750:five_prime_UTR 35.0%
!!! AGAGCAGAGTTTTGTTGTTG+TGG + chr4_1:61328694-61328713 None:intergenic 40.0%
!! GTCGTTTTGTTCAGCTTGTT+AGG + chr4_1:61328732-61328751 None:intergenic 40.0%
GTTCATGTGAAGGAAGATTG+TGG + chr4_1:61328760-61328779 None:intergenic 40.0%
! GTACAATCTGCTACTTGTGA+CGG + chr4_1:61328928-61328947 None:intergenic 40.0%
GATGAAGAGGGTGATAACAA+AGG - chr4_1:61329538-61329557 Msa0561750:CDS 40.0%
CAAAGGTAGTATGTGGGATT+TGG - chr4_1:61329555-61329574 Msa0561750:CDS 40.0%
TCTTCATCTTTCACACCGTT+CGG + chr4_1:61330021-61330040 None:intergenic 40.0%
!! ATATTTGAGAAGAGGCACCA+AGG + chr4_1:61330085-61330104 None:intergenic 40.0%
AGAGCAAATGACAATGGACA+AGG - chr4_1:61330120-61330139 Msa0561750:intron 40.0%
TGGTCCTTGAGATTGTACAA+AGG - chr4_1:61330165-61330184 Msa0561750:CDS 40.0%
GGTCCTTGAGATTGTACAAA+GGG - chr4_1:61330166-61330185 Msa0561750:CDS 40.0%
ATAGCATGCTATAGTGGCAT+TGG - chr4_1:61330367-61330386 Msa0561750:intron 40.0%
ATTGGAAATCTGTAGCAGAG+TGG - chr4_1:61330395-61330414 Msa0561750:intron 40.0%
! CTATGTTTTGCTCAAGACCT+AGG - chr4_1:61330613-61330632 Msa0561750:intron 40.0%
ACCTTTCATGGAAGGTAGAA+CGG + chr4_1:61330988-61331007 None:intergenic 40.0%
AGCAAATGACCTTTCATGGA+AGG + chr4_1:61330996-61331015 None:intergenic 40.0%
TTGCAGCAAATGACCTTTCA+TGG + chr4_1:61331000-61331019 None:intergenic 40.0%
ATATGTACCTGATATAGCCG+GGG + chr4_1:61331122-61331141 None:intergenic 40.0%
CATATGTACCTGATATAGCC+GGG + chr4_1:61331123-61331142 None:intergenic 40.0%
GCATATGTACCTGATATAGC+CGG + chr4_1:61331124-61331143 None:intergenic 40.0%
!!! TAGTTTTATCGGCTGTTGGT+GGG - chr4_1:61331248-61331267 Msa0561750:intron 40.0%
AATCAGCCCCATATGAGTAA+TGG - chr4_1:61331280-61331299 Msa0561750:intron 40.0%
ATGGCACAGACAAAGTTAGT+TGG - chr4_1:61331486-61331505 Msa0561750:intron 40.0%
AGAAACCAAAGGAGGACAAT+TGG + chr4_1:61331521-61331540 None:intergenic 40.0%
CTATTAGGAGAAACCAAAGG+AGG + chr4_1:61331529-61331548 None:intergenic 40.0%
! CTCCTTTGGTTTCTCCTAAT+AGG - chr4_1:61331527-61331546 Msa0561750:intron 40.0%
CTCCTATTAGGAGAAACCAA+AGG + chr4_1:61331532-61331551 None:intergenic 40.0%
! CTTTGGTTTCTCCTAATAGG+AGG - chr4_1:61331530-61331549 Msa0561750:intron 40.0%
GGTATCATGCTCAGTATAAC+AGG - chr4_1:61331668-61331687 Msa0561750:intron 40.0%
GGTATAGCTCACAGTTTACA+GGG - chr4_1:61331747-61331766 Msa0561750:CDS 40.0%
CCATTATCGCTGAAAGCTTA+GGG + chr4_1:61331855-61331874 None:intergenic 40.0%
TCCATTATCGCTGAAAGCTT+AGG + chr4_1:61331856-61331875 None:intergenic 40.0%
!! AGCTTTCAGCGATAATGGAA+AGG - chr4_1:61331857-61331876 Msa0561750:CDS 40.0%
! GCTACCCCAAGTTCAATTTT+AGG + chr4_1:61332211-61332230 None:intergenic 40.0%
ACCAATTGTTAGAACAGCAG+GGG + chr4_1:61332342-61332361 None:intergenic 40.0%
GATGAATTTATTAGGGACGG+AGG - chr4_1:61332425-61332444 Msa0561750:CDS 40.0%
TGTACAGCTTGCATTTACTC+TGG - chr4_1:61332485-61332504 Msa0561750:intron 40.0%
GAATAGGCTAAAAGAAGGCA+AGG + chr4_1:61332519-61332538 None:intergenic 40.0%
! TGCCTTCTTTTAGCCTATTC+TGG - chr4_1:61332519-61332538 Msa0561750:intron 40.0%
GTCCAGAATAGGCTAAAAGA+AGG + chr4_1:61332524-61332543 None:intergenic 40.0%
!! TAACATGTTAGTCTTGTGCC+TGG - chr4_1:61332771-61332790 Msa0561750:intron 40.0%
GAAACTATGACGCACTAACA+CGG + chr4_1:61332808-61332827 None:intergenic 40.0%
TGCAGAAAGAATATACTGGC+CGG - chr4_1:61332980-61332999 Msa0561750:intron 40.0%
GCTGTTGCAACAACAAATAC+CGG + chr4_1:61333002-61333021 None:intergenic 40.0%
!! GGTATTTGTTGTTGCAACAG+CGG - chr4_1:61333001-61333020 Msa0561750:intron 40.0%
ATCTGGACTATATATCTGGC+CGG + chr4_1:61333141-61333160 None:intergenic 40.0%
GATTCTTTGCATTGCTGTCA+CGG - chr4_1:61333178-61333197 Msa0561750:intron 40.0%
ATAGTAAAGTCTCGATGGCA+TGG - chr4_1:61333585-61333604 Msa0561750:intron 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG + chr4_1:61333785-61333804 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG + chr4_1:61333802-61333821 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG - chr4_1:61333826-61333845 Msa0561750:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG - chr4_1:61333995-61334014 Msa0561750:intron 40.0%
AATATCACTGTTAGGTCCTG+CGG - chr4_1:61334100-61334119 Msa0561750:intron 40.0%
! AAATTCAAGTTCATCGCCCT+CGG + chr4_1:61334143-61334162 None:intergenic 40.0%
AACCTCAACTTTGCATAGGA+TGG + chr4_1:61334404-61334423 None:intergenic 40.0%
CTCAAACCTCAACTTTGCAT+AGG + chr4_1:61334408-61334427 None:intergenic 40.0%
CTATGCAAAGTTGAGGTTTG+AGG - chr4_1:61334406-61334425 Msa0561750:intron 40.0%
ACTAATTGTGATGCTTCACG+TGG - chr4_1:61334707-61334726 Msa0561750:five_prime_UTR 40.0%
! GTGACGGAGAGTACAAAACT+GGG + chr4_1:61328912-61328931 None:intergenic 45.0%
! TGTGACGGAGAGTACAAAAC+TGG + chr4_1:61328913-61328932 None:intergenic 45.0%
GCTGAAAATGGCTTCAAGAG+TGG - chr4_1:61329510-61329529 Msa0561750:CDS 45.0%
AAGAGTGGACACTGATGAAG+AGG - chr4_1:61329525-61329544 Msa0561750:CDS 45.0%
AGAGTGGACACTGATGAAGA+GGG - chr4_1:61329526-61329545 Msa0561750:CDS 45.0%
TGGCGTCGTTTATGGAGATT+TGG - chr4_1:61329960-61329979 Msa0561750:CDS 45.0%
GGCGTCGTTTATGGAGATTT+GGG - chr4_1:61329961-61329980 Msa0561750:CDS 45.0%
GAACGGTGTGAAAGATGAAG+AGG - chr4_1:61330020-61330039 Msa0561750:intron 45.0%
!! ATAGTGGCATTGGCTGCTAT+TGG - chr4_1:61330377-61330396 Msa0561750:intron 45.0%
ACTGACATTTGTAGAGCAGG+TGG - chr4_1:61330869-61330888 Msa0561750:CDS 45.0%
ATTCTTACCCCGGCTATATC+AGG - chr4_1:61331112-61331131 Msa0561750:intron 45.0%
!!! GTAGTTTTATCGGCTGTTGG+TGG - chr4_1:61331247-61331266 Msa0561750:intron 45.0%
TGTCTGTGCCATAATGTTGC+AGG + chr4_1:61331478-61331497 None:intergenic 45.0%
TTGCTCCAATTGTCCTCCTT+TGG - chr4_1:61331513-61331532 Msa0561750:intron 45.0%
GAAGAGGTGGAAAACAAGGA+TGG - chr4_1:61331633-61331652 Msa0561750:intron 45.0%
! AAACAAGGATGGACTTCCCT+TGG - chr4_1:61331644-61331663 Msa0561750:intron 45.0%
ACTGAGCATGATACCACCAA+GGG + chr4_1:61331663-61331682 None:intergenic 45.0%
TACTGAGCATGATACCACCA+AGG + chr4_1:61331664-61331683 None:intergenic 45.0%
GGGTATAGCTCACAGTTTAC+AGG - chr4_1:61331746-61331765 Msa0561750:CDS 45.0%
TAGCTCACAGTTTACAGGGT+AGG - chr4_1:61331751-61331770 Msa0561750:CDS 45.0%
CCCTAAGCTTTCAGCGATAA+TGG - chr4_1:61331852-61331871 Msa0561750:CDS 45.0%
TTCGGAGACGTAGGCATAAT+TGG - chr4_1:61331887-61331906 Msa0561750:CDS 45.0%
ACCGAGTTACTGTTCTACAG+CGG - chr4_1:61331974-61331993 Msa0561750:intron 45.0%
!!! TTTTTTGGGTGCTAACCCTC+CGG - chr4_1:61332108-61332127 Msa0561750:intron 45.0%
TGATCCCGTCTCCTAAAAAC+CGG + chr4_1:61332130-61332149 None:intergenic 45.0%
TGTATGCTTTCAGGACCAAG+GGG + chr4_1:61332319-61332338 None:intergenic 45.0%
GTGTATGCTTTCAGGACCAA+GGG + chr4_1:61332320-61332339 None:intergenic 45.0%
ACCCCTGCTGTTCTAACAAT+TGG - chr4_1:61332338-61332357 Msa0561750:CDS 45.0%
! TGCCGACCTATCTCATTTTC+CGG - chr4_1:61332455-61332474 Msa0561750:CDS 45.0%
GACCGGAAAATGAGATAGGT+CGG + chr4_1:61332460-61332479 None:intergenic 45.0%
CTGAGACCGGAAAATGAGAT+AGG + chr4_1:61332464-61332483 None:intergenic 45.0%
GTATGCAGCTTGTCCAGAAT+AGG + chr4_1:61332535-61332554 None:intergenic 45.0%
ATGTTGCAGTTATTGTCGCC+TGG + chr4_1:61333043-61333062 None:intergenic 45.0%
ATTAAGCAAGCCCTTGCTCA+TGG - chr4_1:61333071-61333090 Msa0561750:intron 45.0%
AGGGAAACAACCATGAGCAA+GGG + chr4_1:61333084-61333103 None:intergenic 45.0%
TAGGGAAACAACCATGAGCA+AGG + chr4_1:61333085-61333104 None:intergenic 45.0%
! TTCGTTAACAGGTACTGCAG+TGG - chr4_1:61333319-61333338 Msa0561750:CDS 45.0%
TGGGTTCCTCTTGTAATTGC+CGG - chr4_1:61333497-61333516 Msa0561750:intron 45.0%
AACACTCCGGCAATTACAAG+AGG + chr4_1:61333506-61333525 None:intergenic 45.0%
CTTGTTCGTGTACCAGGAAT+CGG - chr4_1:61333635-61333654 Msa0561750:intron 45.0%
GTCTACACAGAACTTGCAAG+TGG - chr4_1:61333662-61333681 Msa0561750:intron 45.0%
ACAACAACAGAATGGATGGC+TGG + chr4_1:61333725-61333744 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG + chr4_1:61333784-61333803 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG - chr4_1:61333831-61333850 Msa0561750:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG + chr4_1:61333871-61333890 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG - chr4_1:61333973-61333992 Msa0561750:intron 45.0%
TTATATGGAGGACAGCAGGA+TGG - chr4_1:61333977-61333996 Msa0561750:intron 45.0%
AAGCACGACTTCTTCGAATG+TGG - chr4_1:61334018-61334037 Msa0561750:intron 45.0%
GTGATATTCACATTTGGCGG+CGG + chr4_1:61334088-61334107 None:intergenic 45.0%
TTGAATAACTGCAGGGATGC+TGG - chr4_1:61334163-61334182 Msa0561750:intron 45.0%
TGAATAACTGCAGGGATGCT+GGG - chr4_1:61334164-61334183 Msa0561750:intron 45.0%
GAAACACAGTTGTGATGGCA+AGG - chr4_1:61334203-61334222 Msa0561750:intron 45.0%
TTTGTGATGAAGGGAATGGG+AGG + chr4_1:61334367-61334386 None:intergenic 45.0%
TGCCATCCTATGCAAAGTTG+AGG - chr4_1:61334399-61334418 Msa0561750:intron 45.0%
GAACAACATCACCTTGCTTG+CGG - chr4_1:61334443-61334462 Msa0561750:five_prime_UTR 45.0%
! TTGTGAAAATTGAGTGCCGC+CGG + chr4_1:61334649-61334668 None:intergenic 45.0%
!! TTAATTAAATAAATAAAACA+GGG + chr4_1:61329311-61329330 None:intergenic 5.0%
!! ATTAATTAAATAAATAAAAC+AGG + chr4_1:61329312-61329331 None:intergenic 5.0%
ACAGAAGCTTGACCAGCCTA+TGG - chr4_1:61329579-61329598 Msa0561750:CDS 50.0%
CGGCTTGCATATCAGAGTCT+TGG - chr4_1:61329940-61329959 Msa0561750:CDS 50.0%
CAGAGTCTTGGCGTCGTTTA+TGG - chr4_1:61329952-61329971 Msa0561750:CDS 50.0%
!! GAGTGGTTTGCTGCATTAGC+TGG - chr4_1:61330412-61330431 Msa0561750:intron 50.0%
TCAAGACCTAGGCCATGACT+AGG - chr4_1:61330624-61330643 Msa0561750:intron 50.0%
CAGTTACCTAGTCATGGCCT+AGG + chr4_1:61330633-61330652 None:intergenic 50.0%
! TCATCGGTGCGATGCTGATT+GGG + chr4_1:61330947-61330966 None:intergenic 50.0%
TTCATCGGTGCGATGCTGAT+TGG + chr4_1:61330948-61330967 None:intergenic 50.0%
GCCGTTCTACCTTCCATGAA+AGG - chr4_1:61330984-61331003 Msa0561750:intron 50.0%
GGTTGGAGGAACGTGAATCA+TGG - chr4_1:61331032-61331051 Msa0561750:intron 50.0%
ACCTGCATGGTAATCGGAGA+CGG - chr4_1:61331088-61331107 Msa0561750:intron 50.0%
! ATCGGCTGTTGGTGGGATTA+AGG - chr4_1:61331255-61331274 Msa0561750:intron 50.0%
GGTATTGCATTCGGAGACGT+AGG - chr4_1:61331878-61331897 Msa0561750:CDS 50.0%
GCATAATTGGCCGAACTCCA+TGG - chr4_1:61331900-61331919 Msa0561750:CDS 50.0%
GCCGCTGTAGAACAGTAACT+CGG + chr4_1:61331978-61331997 None:intergenic 50.0%
! GTGCTAACCCTCCGGTTTTT+AGG - chr4_1:61332116-61332135 Msa0561750:intron 50.0%
!! ACCCTCCGGTTTTTAGGAGA+CGG - chr4_1:61332122-61332141 Msa0561750:intron 50.0%
GGTGTATGCTTTCAGGACCA+AGG + chr4_1:61332321-61332340 None:intergenic 50.0%
GTGAATCCAGTGTCTGACAC+CGG - chr4_1:61332679-61332698 Msa0561750:intron 50.0%
!! TAGTCTTGTGCCTGGTGTCT+CGG - chr4_1:61332779-61332798 Msa0561750:intron 50.0%
TTTGCATTGCTGTCACGGCA+GGG - chr4_1:61333183-61333202 Msa0561750:intron 50.0%
AGGCGAGTACAAGAATCCAG+TGG + chr4_1:61333406-61333425 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG - chr4_1:61333593-61333612 Msa0561750:intron 50.0%
TCTCGATGGCATGGATTCTC+GGG - chr4_1:61333594-61333613 Msa0561750:intron 50.0%
! GTGTAGACTAGTCCGATTCC+TGG + chr4_1:61333650-61333669 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG + chr4_1:61333717-61333736 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG + chr4_1:61333721-61333740 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG + chr4_1:61333780-61333799 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG + chr4_1:61333832-61333851 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG - chr4_1:61333836-61333855 Msa0561750:exon 50.0%
TCAAGTAAGTGGCCAAACCG+AGG - chr4_1:61334123-61334142 Msa0561750:intron 50.0%
CAAGTAAGTGGCCAAACCGA+GGG - chr4_1:61334124-61334143 Msa0561750:intron 50.0%
GAATAACTGCAGGGATGCTG+GGG - chr4_1:61334165-61334184 Msa0561750:intron 50.0%
GCTGGGGTGGTTCACATATT+AGG - chr4_1:61334181-61334200 Msa0561750:intron 50.0%
ACACAGTTGTGATGGCAAGG+AGG - chr4_1:61334206-61334225 Msa0561750:intron 50.0%
CACAGTTGTGATGGCAAGGA+GGG - chr4_1:61334207-61334226 Msa0561750:intron 50.0%
!! AGCACTGATTACCGCAAGCA+AGG + chr4_1:61334457-61334476 None:intergenic 50.0%
GAAGCTTGACCAGCCTATGG+AGG - chr4_1:61329582-61329601 Msa0561750:CDS 55.0%
TGACCAGCCTATGGAGGAAG+AGG - chr4_1:61329588-61329607 Msa0561750:CDS 55.0%
CTTCCTGCCTCTTCCTCCAT+AGG + chr4_1:61329598-61329617 None:intergenic 55.0%
AGGAAGAGGCAGGAAGACTC+AGG - chr4_1:61329602-61329621 Msa0561750:CDS 55.0%
! GGTGCGATGCTGATTGGGAA+TGG + chr4_1:61330942-61330961 None:intergenic 55.0%
TTACCATGCAGGTGCCAGCA+AGG + chr4_1:61331081-61331100 None:intergenic 55.0%
GCTGGCACCTGCATGGTAAT+CGG - chr4_1:61331082-61331101 Msa0561750:intron 55.0%
CCTGCATGGTAATCGGAGAC+GGG - chr4_1:61331089-61331108 Msa0561750:intron 55.0%
! CAAGGATGGACTTCCCTTGG+TGG - chr4_1:61331647-61331666 Msa0561750:intron 55.0%
GGTCATTGAGCCCTGTGGTA+CGG - chr4_1:61331772-61331791 Msa0561750:CDS 55.0%
TACCCCTGAACCGTACCACA+GGG + chr4_1:61331785-61331804 None:intergenic 55.0%
TTACCCCTGAACCGTACCAC+AGG + chr4_1:61331786-61331805 None:intergenic 55.0%
CCCGTCTCCTAAAAACCGGA+GGG + chr4_1:61332126-61332145 None:intergenic 55.0%
!! CCCTCCGGTTTTTAGGAGAC+GGG - chr4_1:61332123-61332142 Msa0561750:intron 55.0%
TCCCGTCTCCTAAAAACCGG+AGG + chr4_1:61332127-61332146 None:intergenic 55.0%
ATGCTTTCAGGACCAAGGGG+TGG + chr4_1:61332316-61332335 None:intergenic 55.0%
! CAGCAGGGGTGTATGCTTTC+AGG + chr4_1:61332328-61332347 None:intergenic 55.0%
GCAAGCTGTACAGCTGAGAC+CGG + chr4_1:61332477-61332496 None:intergenic 55.0%
CCACATGTGTCTGTGTGTGC+CGG + chr4_1:61332701-61332720 None:intergenic 55.0%
! TGTCGCCTGGCTTGCAACTA+TGG + chr4_1:61333030-61333049 None:intergenic 55.0%
CTTTGCATTGCTGTCACGGC+AGG - chr4_1:61333182-61333201 Msa0561750:intron 55.0%
ATGGCATGGATTCTCGGGCT+TGG - chr4_1:61333599-61333618 Msa0561750:intron 55.0%
CCTTCCTGTTTACACCGTCC+CGG - chr4_1:61333763-61333782 Msa0561750:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG + chr4_1:61333770-61333789 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG - chr4_1:61334112-61334131 Msa0561750:intron 55.0%
TTGGCCACTTACTTGACCGC+AGG + chr4_1:61334119-61334138 None:intergenic 55.0%
CAAGTTCATCGCCCTCGGTT+TGG + chr4_1:61334138-61334157 None:intergenic 55.0%
CTGCCTCTTCCTCCATAGGC+TGG + chr4_1:61329594-61329613 None:intergenic 60.0%
CAGCCTATGGAGGAAGAGGC+AGG - chr4_1:61329592-61329611 Msa0561750:CDS 60.0%
TGTCCTTGCTGGCACCTGCA+TGG - chr4_1:61331075-61331094 Msa0561750:intron 60.0%
CCCGTCTCCGATTACCATGC+AGG + chr4_1:61331092-61331111 None:intergenic 60.0%
CGGAGACGGGATTCTTACCC+CGG - chr4_1:61331102-61331121 Msa0561750:intron 60.0%
GGGTAGGTCATTGAGCCCTG+TGG - chr4_1:61331767-61331786 Msa0561750:CDS 60.0%
TGAGCCCTGTGGTACGGTTC+AGG - chr4_1:61331778-61331797 Msa0561750:CDS 60.0%
GAGCCCTGTGGTACGGTTCA+GGG - chr4_1:61331779-61331798 Msa0561750:CDS 60.0%
AGCCCTGTGGTACGGTTCAG+GGG - chr4_1:61331780-61331799 Msa0561750:CDS 60.0%
TCAGGACCAAGGGGTGGCTA+TGG + chr4_1:61332310-61332329 None:intergenic 60.0%
! TGTGTGCCGGTGTCAGACAC+TGG + chr4_1:61332688-61332707 None:intergenic 60.0%
CCGGCACACACAGACACATG+TGG - chr4_1:61332698-61332717 Msa0561750:intron 60.0%
AACACGGACACCGAGACACC+AGG + chr4_1:61332792-61332811 None:intergenic 60.0%
GGCAGCCATAGTTGCAAGCC+AGG - chr4_1:61333022-61333041 Msa0561750:intron 60.0%
TATTGGTGTGGCGCTGCCAC+TGG - chr4_1:61333387-61333406 Msa0561750:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG + chr4_1:61333766-61333785 None:intergenic 60.0%
TAACTGCAGGGATGCTGGGG+TGG - chr4_1:61334168-61334187 Msa0561750:intron 60.0%
GGGTAGCCATAGCCACCCCT+TGG - chr4_1:61332301-61332320 Msa0561750:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 61328632 61334736 61328632 ID=Msa0561750;Name=Msa0561750
chr4_1 mRNA 61328632 61334736 61328632 ID=Msa0561750-mRNA-1;Parent=Msa0561750;Name=Msa0561750-mRNA-1;_AED=0.29;_eAED=0.29;_QI=374|0.87|0.88|1|0.87|0.77|9|373|776
chr4_1 exon 61328632 61330038 61328632 ID=Msa0561750-mRNA-1:exon:19291;Parent=Msa0561750-mRNA-1
chr4_1 exon 61330129 61330347 61330129 ID=Msa0561750-mRNA-1:exon:19290;Parent=Msa0561750-mRNA-1
chr4_1 exon 61330762 61330929 61330762 ID=Msa0561750-mRNA-1:exon:19289;Parent=Msa0561750-mRNA-1
chr4_1 exon 61331679 61331939 61331679 ID=Msa0561750-mRNA-1:exon:19288;Parent=Msa0561750-mRNA-1
chr4_1 exon 61332067 61332117 61332067 ID=Msa0561750-mRNA-1:exon:19287;Parent=Msa0561750-mRNA-1
chr4_1 exon 61332235 61332480 61332235 ID=Msa0561750-mRNA-1:exon:19286;Parent=Msa0561750-mRNA-1
chr4_1 exon 61333227 61333452 61333227 ID=Msa0561750-mRNA-1:exon:19285;Parent=Msa0561750-mRNA-1
chr4_1 exon 61333726 61333900 61333726 ID=Msa0561750-mRNA-1:exon:19284;Parent=Msa0561750-mRNA-1
chr4_1 exon 61334412 61334736 61334412 ID=Msa0561750-mRNA-1:exon:19283;Parent=Msa0561750-mRNA-1
chr4_1 five_prime_UTR 61334412 61334736 61334412 ID=Msa0561750-mRNA-1:five_prime_utr;Parent=Msa0561750-mRNA-1
chr4_1 five_prime_UTR 61333852 61333900 61333852 ID=Msa0561750-mRNA-1:five_prime_utr;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61333726 61333851 61333726 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61333227 61333452 61333227 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61332235 61332480 61332235 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61332067 61332117 61332067 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61331679 61331939 61331679 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61330762 61330929 61330762 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61330129 61330347 61330129 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 CDS 61329005 61330038 61329005 ID=Msa0561750-mRNA-1:cds;Parent=Msa0561750-mRNA-1
chr4_1 three_prime_UTR 61328632 61329004 61328632 ID=Msa0561750-mRNA-1:three_prime_utr;Parent=Msa0561750-mRNA-1
Gene Sequence

>Msa0561750

ATGGCTTCAAGAGTGGACACTGATGAAGAGGGTGATAACAAAGGTAGTATGTGGGATTTGGAACAGAAGCTTGACCAGCCTATGGAGGAAGAGGCAGGAAGACTCAGGAATATGTACAGAGAAAAAAAATTTTCTGCATTGTTGATTCTGCGGCTTGCATATCAGAGTCTTGGCGTCGTTTATGGAGATTTGGGAACTTCACCCTTGTATGTTTTCTACAATATATTTCCGAACGGTGTGAAAGATGAAGAGGAAGTACTTGGAGCTCTTTCTTTGATTATCTACTCTCTTACCTTGGTGCCTCTTCTCAAATATGTTTTTATTGTGTTAAGAGCAAATGACAATGGACAAGGTGGAACATTTGCGCTTTATTCTTTGCTTTGCCGACACGCAAAGATAAAAACCATTCCCAATCAGCATCGCACCGATGAAGAACTAACAACATATAGCCGTTCTACCTTCCATGAAAGGTCATTTGCTGCAAAAACTAAAAGATGGTTGGAGGAACGTGAATCATGGAAGAGTGCCATTCTTATTCTTGTCCTTGCTGGCACCTGCATGGTAATCGGAGACGGGATTCTTACCCCGGCTATATCAGTTTTATCGGCTGTTGGTGGGATTAAGGTAAATCAGCCCCATATGAGTAATGGTGTGGTAGTTCTGATTGCTGTTGTAATATTAGTTGGATTTTTCAGCCTGCAACATTATGGCACAGACAAAGTTAGTTGGCTCTTTGCTCCAATTGTCCTCCTTTGGTTTCTCCTAATAGGAGGTATTGGTATATTTAACATCTGTAAGTATGGAAGCGGAGTTCTAAAAGCCTTTTCTCCTGTTTACATATATCACTATTTTAGAAGAGGTGGAAAACAAGGATGGACTTCCCTTGGTGGTATCATGCTCAGTATAACAGGGACGGAGGCTCTTTTTGCCGACCTATCTCATTTTCCGGTCTCAGCTGTACAGCTTGCATTTACTCTGGTTGTGTTTCCTTGCCTTCTTTTAGCCTATTCTGGACAAGCTGCATACCTTATGAATAACTTGACTCATTCAAAAGATGCTTTTTATCTTTCTATTCCAGCGGCAGCCATAGTTGCAAGCCAGGCGACAATAACTGCAACATTTTCGATTATTAAGCAAGCCCTTGCTCATGGTTGTTTCCCTAGAGTTAAAGTTGTATATACATCAAAGAAGTTTGCCGGCCAGATATATAGTCCAGATATCAATTGGGTCCTTATGATTCTTTGCATTGCTGTCACGGCAGGGTTCGAAAATCAAAACCAGATTGGAAATGCTTATGGTACTGCAGTGGTGATTGTCTTTCTCGTTACTACATTCCTTATGATTTTAATCATGATATTGGTGTGGCGCTGCCACTGGATTCTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTTAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATCATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAGTTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCAGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTCGTATGCGTCAAATACCTTCCTGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAGAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGATGAATACAGTTTATATGGAGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATGTGAATATCACTGTTAGGTCCTGCGGTCAAGTAAGTGGCCAAACCGAGGGCGATGAACTTGAATTTTTGAATAACTGCAGGGATGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG
Protein sequence

>Msa0561750

MASRVDTDEEGDNKGSMWDLEQKLDQPMEEEAGRLRNMYREKKFSALLILRLAYQSLGVVYGDLGTSPLYVFYNIFPNGVKDEEEVLGALSLIIYSLTLVPLLKYVFIVLRANDNGQGGTFALYSLLCRHAKIKTIPNQHRTDEELTTYSRSTFHERSFAAKTKRWLEERESWKSAILILVLAGTCMVIGDGILTPAISVLSAVGGIKVNQPHMSNGVVVLIAVVILVGFFSLQHYGTDKVSWLFAPIVLLWFLLIGGIGIFNICKYGSGVLKAFSPVYIYHYFRRGGKQGWTSLGGIMLSITGTEALFADLSHFPVSAVQLAFTLVVFPCLLLAYSGQAAYLMNNLTHSKDAFYLSIPAAAIVASQATITATFSIIKQALAHGCFPRVKVVYTSKKFAGQIYSPDINWVLMILCIAVTAGFENQNQIGNAYGTAVVIVFLVTTFLMILIMILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSDEYSLYGGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNVNITVRSCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*