AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389990 MtrunA17_Chr8g0377941 75.071 353 24 6 1 290 121 472 1.89e-172 485
Msa1389990 MtrunA17_Chr8g0377921 51.124 356 94 7 1 279 112 464 3.16e-106 317
Msa1389990 MtrunA17_Chr3g0121991 44.054 370 114 12 1 285 187 548 1.79e-84 263
Msa1389990 MtrunA17_Chr3g0122001 44.236 373 116 12 1 288 114 479 5.78e-80 260
Msa1389990 MtrunA17_Chr3g0122001 44.077 363 114 11 1 278 594 952 6.37e-79 257
Msa1389990 MtrunA17_Chr1g0207981 33.333 348 158 12 2 280 132 474 5.41e-50 172
Msa1389990 MtrunA17_Chr5g0393591 32.692 312 168 11 2 278 131 435 5.68e-43 152
Msa1389990 MtrunA17_Chr6g0464921 33.429 347 155 12 2 280 119 457 1.36e-41 149
Msa1389990 MtrunA17_Chr6g0464881 32.464 345 160 12 2 280 119 456 1.81e-41 149
Msa1389990 MtrunA17_Chr6g0464841 34.211 342 148 13 2 275 119 451 1.06e-39 144
Msa1389990 MtrunA17_Chr3g0098111 31.805 349 161 11 2 278 126 469 1.10e-39 144
Msa1389990 MtrunA17_Chr5g0414331 32.551 341 158 11 2 276 117 451 1.77e-39 143
Msa1389990 MtrunA17_Chr1g0207951 32.344 337 167 10 2 278 235 570 9.06e-39 144
Msa1389990 MtrunA17_Chr1g0207951 29.769 346 174 10 2 283 773 1113 3.71e-33 128
Msa1389990 MtrunA17_Chr7g0249931 31.503 346 160 12 2 279 148 484 6.20e-38 139
Msa1389990 MtrunA17_Chr4g0053501 29.096 354 173 9 2 282 120 468 8.57e-38 139
Msa1389990 MtrunA17_Chr6g0464861 32.845 341 154 12 2 275 118 450 1.72e-37 138
Msa1389990 MtrunA17_Chr8g0365811 30.398 352 166 10 2 278 610 957 1.21e-36 138
Msa1389990 MtrunA17_Chr8g0365811 31.534 352 162 11 2 278 128 475 3.19e-34 131
Msa1389990 MtrunA17_Chr5g0414321 32.565 347 162 14 2 282 115 455 3.60e-36 134
Msa1389990 MtrunA17_Chr6g0464871 31.686 344 154 11 2 275 131 463 8.62e-36 133
Msa1389990 MtrunA17_Chr1g0207861 32.958 355 159 13 2 284 125 472 2.02e-35 132
Msa1389990 MtrunA17_Chr5g0401721 27.616 344 172 11 8 279 133 471 4.88e-35 131
Msa1389990 MtrunA17_Chr1g0207971 30.612 343 176 10 3 284 118 459 2.88e-34 129
Msa1389990 MtrunA17_Chr7g0250001 31.214 346 161 12 2 279 112 448 3.60e-34 129
Msa1389990 MtrunA17_Chr8g0380531 30.172 348 162 12 2 278 120 457 1.22e-33 127
Msa1389990 MtrunA17_Chr1g0161351 31.609 348 163 9 2 278 154 497 1.39e-33 128
Msa1389990 MtrunA17_Chr1g0207931 30.915 317 151 9 2 278 209 497 5.42e-33 126
Msa1389990 MtrunA17_Chr7g0249961 37.755 196 87 6 115 279 69 260 2.10e-31 117
Msa1389990 MtrunA17_Chr4g0053321 28.814 354 174 10 2 282 135 483 4.43e-31 121
Msa1389990 MtrunA17_Chr7g0249981 30.058 346 165 13 2 279 131 467 5.98e-31 120
Msa1389990 MtrunA17_Chr1g0207831 30.321 343 169 11 2 278 125 463 1.93e-30 119
Msa1389990 MtrunA17_Chr5g0431441 27.859 341 178 12 4 279 129 466 1.45e-27 111
Msa1389990 MtrunA17_Chr5g0431361 32.663 199 101 5 111 278 257 453 3.72e-25 104
Msa1389990 MtrunA17_Chr3g0106231 33.175 211 105 6 111 290 257 462 1.79e-24 102
Msa1389990 MtrunA17_Chr5g0431421 26.254 339 182 12 2 279 118 449 4.29e-24 101
Msa1389990 MtrunA17_Chr5g0432731 30.882 204 108 4 109 279 94 297 5.61e-24 98.6
Msa1389990 MtrunA17_Chr7g0243871 32.547 212 98 5 112 278 261 472 1.10e-23 100
Msa1389990 MtrunA17_Chr3g0106251 32.701 211 106 6 111 290 99 304 3.34e-23 97.1
Msa1389990 MtrunA17_Chr5g0431401 24.927 341 182 12 2 278 118 448 1.12e-22 97.1
Msa1389990 MtrunA17_Chr7g0243801 25.634 355 182 13 3 278 125 476 1.69e-22 97.1
Msa1389990 MtrunA17_Chr7g0243771 25.634 355 182 13 3 278 124 475 2.82e-22 96.3
Msa1389990 MtrunA17_Chr7g0243631 27.224 371 164 14 1 278 129 486 5.83e-22 95.5
Msa1389990 MtrunA17_Chr7g0235051 28.664 307 136 11 53 277 147 452 3.79e-21 92.8
Msa1389990 MtrunA17_Chr5g0426431 28.247 308 156 8 38 281 174 480 4.53e-21 92.8
Msa1389990 MtrunA17_Chr1g0207881 28.840 319 149 11 2 278 102 384 5.18e-21 92.0
Msa1389990 MtrunA17_Chr5g0431371 29.648 199 107 4 111 278 252 448 1.96e-20 90.9
Msa1389990 MtrunA17_Chr7g0243681 26.757 370 162 15 1 278 127 479 2.17e-20 90.9
Msa1389990 MtrunA17_Chr3g0118721 28.571 217 112 5 103 283 85 294 4.15e-20 88.2
Msa1389990 MtrunA17_Chr7g0243781 29.817 218 106 5 108 278 258 475 5.44e-20 89.7
Msa1389990 MtrunA17_Chr6g0454341 27.564 312 174 10 4 281 187 480 7.90e-20 89.0
Msa1389990 MtrunA17_Chr3g0118691 29.493 217 109 6 104 283 278 487 1.29e-19 88.6
Msa1389990 MtrunA17_Chr2g0278711 25.627 359 173 13 7 280 129 478 1.64e-19 88.2
Msa1389990 MtrunA17_Chr5g0431431 36.250 160 78 5 97 236 185 340 3.23e-19 86.7
Msa1389990 MtrunA17_Chr3g0118701 29.680 219 106 7 104 283 278 487 7.05e-19 86.3
Msa1389990 MtrunA17_Chr3g0118711 29.493 217 109 5 104 283 276 485 1.31e-18 85.5
Msa1389990 MtrunA17_Chr7g0218811 28.077 260 122 7 49 276 221 447 2.36e-18 84.7
Msa1389990 MtrunA17_Chr6g0454151 29.358 218 112 5 100 282 271 481 3.27e-18 84.3
Msa1389990 MtrunA17_Chr3g0118671 27.941 204 104 5 116 283 282 478 3.66e-18 84.3
Msa1389990 MtrunA17_Chr4g0072761 32.308 195 95 6 115 278 264 452 5.37e-18 83.6
Msa1389990 MtrunA17_Chr5g0419771 27.189 217 110 5 111 279 297 513 7.27e-18 83.6
Msa1389990 MtrunA17_Chr3g0118771 28.846 208 105 6 112 283 293 493 9.02e-18 83.2
Msa1389990 MtrunA17_Chr6g0454301 29.268 205 103 5 112 281 536 733 9.43e-18 83.2
Msa1389990 MtrunA17_Chr6g0454181 26.689 296 149 8 21 281 220 482 1.51e-17 82.4
Msa1389990 MtrunA17_Chr6g0454331 29.032 217 112 5 100 281 272 481 1.79e-17 82.0
Msa1389990 MtrunA17_Chr4g0066281 30.841 214 101 6 112 278 253 466 2.33e-17 82.0
Msa1389990 MtrunA17_Chr6g0454221 28.571 210 108 5 103 277 27 229 2.44e-17 80.5
Msa1389990 MtrunA17_Chr6g0454121 30.516 213 114 6 100 281 272 481 2.48e-17 81.6
Msa1389990 MtrunA17_Chr8g0361371 30.660 212 96 6 115 275 256 467 2.74e-17 81.6
Msa1389990 MtrunA17_Chr7g0243951 24.860 358 184 13 3 278 129 483 2.80e-17 81.6
Msa1389990 MtrunA17_Chr8g0336331 28.972 214 110 5 103 281 273 479 3.09e-17 81.6
Msa1389990 MtrunA17_Chr6g0452771 28.926 242 128 6 77 281 248 482 3.55e-17 81.3
Msa1389990 MtrunA17_Chr4g0066171 29.439 214 100 8 114 278 265 476 4.46e-17 80.9
Msa1389990 MtrunA17_Chr3g0092641 30.144 209 118 4 100 280 271 479 4.56e-17 80.9
Msa1389990 MtrunA17_Chr6g0454131 31.455 213 112 7 100 281 272 481 5.53e-17 80.9
Msa1389990 MtrunA17_Chr7g0243931 23.677 359 188 12 3 278 135 490 5.57e-17 80.9
Msa1389990 MtrunA17_Chr4g0066151 27.982 218 106 6 112 278 262 479 6.47e-17 80.5
Msa1389990 MtrunA17_Chr6g0454361 26.360 239 134 5 78 281 252 483 7.18e-17 80.5
Msa1389990 MtrunA17_Chr7g0217881 30.332 211 117 4 100 281 255 464 7.49e-17 80.5
Msa1389990 MtrunA17_Chr6g0454321 29.000 200 100 5 103 267 274 466 9.15e-17 80.5
Msa1389990 MtrunA17_Chr6g0454291 28.910 211 120 4 100 281 270 479 1.09e-16 79.7
Msa1389990 MtrunA17_Chr4g0066201 27.358 212 107 5 114 278 263 474 2.02e-16 79.0
Msa1389990 MtrunA17_Chr3g0112771 30.380 237 117 7 84 279 223 452 2.03e-16 79.0
Msa1389990 MtrunA17_Chr6g0454271 27.650 217 115 5 100 281 80 289 2.32e-16 77.4
Msa1389990 MtrunA17_Chr6g0454191 30.288 208 115 5 103 281 277 483 2.47e-16 79.0
Msa1389990 MtrunA17_Chr4g0060511 24.654 361 186 13 1 278 130 487 2.66e-16 79.0
Msa1389990 MtrunA17_Chr5g0426401 29.333 300 144 12 48 280 14 312 2.87e-16 77.4
Msa1389990 MtrunA17_Chr7g0243911 33.333 183 77 6 113 250 20 202 2.98e-16 76.3
Msa1389990 MtrunA17_Chr6g0454201 29.703 202 100 5 115 281 289 483 3.18e-16 78.6
Msa1389990 MtrunA17_Chr7g0243711 29.167 216 108 8 108 278 101 316 3.90e-16 77.4
Msa1389990 MtrunA17_Chr6g0453951 29.808 208 116 5 103 281 323 529 4.91e-16 78.2
Msa1389990 MtrunA17_Chr2g0307961 29.381 194 104 7 117 280 280 470 6.06e-16 77.8
Msa1389990 MtrunA17_Chr1g0165701 31.401 207 99 6 115 278 277 483 6.08e-16 77.8
Msa1389990 MtrunA17_Chr6g0454211 28.571 217 113 5 100 281 560 769 6.18e-16 77.8
Msa1389990 MtrunA17_Chr6g0454401 29.717 212 115 6 103 283 277 485 7.95e-16 77.4
Msa1389990 MtrunA17_Chr3g0078841 27.570 214 113 5 103 281 274 480 1.03e-15 77.0
Msa1389990 MtrunA17_Chr7g0232391 29.167 216 103 7 106 274 249 461 1.18e-15 76.6
Msa1389990 MtrunA17_Chr7g0232411 29.167 216 103 7 106 274 249 461 1.18e-15 76.6
Msa1389990 MtrunA17_Chr6g0454141 28.571 217 107 6 103 281 276 482 1.28e-15 76.6
Msa1389990 MtrunA17_Chr7g0218821 29.381 194 99 6 115 276 261 448 1.39e-15 76.6
Msa1389990 MtrunA17_Chr3g0112761 30.732 205 109 5 107 279 247 450 1.61e-15 76.3
Msa1389990 MtrunA17_Chr8g0374941 28.440 218 105 6 112 278 1200 1417 1.64e-15 77.0
Msa1389990 MtrunA17_Chr8g0374941 27.941 204 96 6 112 264 262 465 5.36e-12 66.2
Msa1389990 MtrunA17_Chr4g0072771 27.511 229 135 8 76 275 236 462 1.78e-15 76.3
Msa1389990 MtrunA17_Chr7g0243851 28.774 212 106 5 112 278 231 442 1.91e-15 76.3
Msa1389990 MtrunA17_Chr7g0243761 26.136 352 162 15 1 278 127 454 3.27e-15 75.5
Msa1389990 MtrunA17_Chr6g0462541 28.899 218 113 6 97 277 250 462 4.60e-15 75.1
Msa1389990 MtrunA17_Chr6g0453961 27.570 214 113 5 103 281 286 492 5.15e-15 75.1
Msa1389990 MtrunA17_Chr5g0416821 30.151 199 108 6 111 278 275 473 5.35e-15 74.7
Msa1389990 MtrunA17_Chr7g0218831 27.363 201 108 6 107 275 242 436 5.55e-15 74.7
Msa1389990 MtrunA17_Chr7g0250021 30.047 213 107 8 2 178 120 326 6.44e-15 73.9
Msa1389990 MtrunA17_Chr8g0374901 27.027 222 105 6 111 278 260 478 6.81e-15 74.7
Msa1389990 MtrunA17_Chr2g0329111 29.075 227 116 7 83 264 233 459 8.47e-15 74.3
Msa1389990 MtrunA17_Chr4g0050341 28.426 197 102 5 113 275 296 487 8.83e-15 74.3
Msa1389990 MtrunA17_Chr5g0423981 27.189 217 116 5 100 281 238 447 9.10e-15 73.9
Msa1389990 MtrunA17_Chr8g0382021 26.667 210 107 5 115 278 280 488 1.00e-14 73.9
Msa1389990 MtrunA17_Chr8g0336651 28.708 209 99 6 113 274 255 460 1.17e-14 74.3
Msa1389990 MtrunA17_Chr8g0336651 30.392 204 104 5 97 274 579 770 1.96e-14 73.6
Msa1389990 MtrunA17_Chr8g0334831 31.088 193 74 6 115 248 255 447 1.66e-14 73.6
Msa1389990 MtrunA17_Chr4g0042891 24.611 321 163 13 30 275 146 462 2.70e-14 72.8
Msa1389990 MtrunA17_Chr1g0153461 28.365 208 102 5 113 274 2 208 2.95e-14 70.5
Msa1389990 MtrunA17_Chr1g0173121 27.053 207 107 6 115 278 257 462 3.96e-14 72.4
Msa1389990 MtrunA17_Chr8g0339631 23.699 346 185 12 5 274 122 464 3.98e-14 72.4
Msa1389990 MtrunA17_Chr1g0159551 26.570 207 108 6 115 278 254 459 4.21e-14 72.0
Msa1389990 MtrunA17_Chr6g0454261 27.189 217 116 5 100 281 273 482 4.99e-14 72.0
Msa1389990 MtrunA17_Chr5g0442581 25.431 232 117 6 111 289 259 487 6.35e-14 71.6
Msa1389990 MtrunA17_Chr7g0218841 26.866 201 109 6 107 275 243 437 6.45e-14 71.6
Msa1389990 MtrunA17_Chr6g0462531 30.233 215 107 7 102 274 247 460 7.70e-14 71.2
Msa1389990 MtrunA17_Chr6g0462521 26.667 300 163 10 24 267 141 439 9.07e-14 71.2
Msa1389990 MtrunA17_Chr3g0118661 28.947 190 89 6 54 198 190 378 1.13e-13 70.9
Msa1389990 MtrunA17_Chr1g0153451 27.619 210 101 6 113 274 253 459 1.13e-13 70.9
Msa1389990 MtrunA17_Chr5g0401851 30.144 209 102 7 114 278 275 483 1.60e-13 70.5
Msa1389990 MtrunA17_Chr8g0374971 27.602 221 103 6 112 278 263 480 1.78e-13 70.5
Msa1389990 MtrunA17_Chr4g0066131 26.389 216 108 6 112 276 257 472 1.80e-13 70.5
Msa1389990 MtrunA17_Chr6g0482061 24.519 208 112 5 111 277 275 478 1.88e-13 70.1
Msa1389990 MtrunA17_Chr5g0442521 23.364 321 158 11 42 279 161 476 2.38e-13 70.1
Msa1389990 MtrunA17_Chr8g0355221 29.187 209 103 6 115 278 278 486 2.42e-13 70.1
Msa1389990 MtrunA17_Chr7g0243861 27.778 216 111 5 108 278 272 487 2.43e-13 70.1
Msa1389990 MtrunA17_Chr8g0347281 27.586 203 99 5 116 271 264 465 2.45e-13 69.7
Msa1389990 MtrunA17_Chr5g0410941 27.650 217 107 5 112 278 273 489 2.66e-13 69.7
Msa1389990 MtrunA17_Chr6g0486251 30.288 208 94 8 115 274 256 460 2.91e-13 69.7
Msa1389990 MtrunA17_Chr6g0486201 30.288 208 94 8 115 274 256 460 2.91e-13 69.7
Msa1389990 MtrunA17_Chr5g0412111 43.333 90 45 2 115 198 272 361 7.15e-13 68.6
Msa1389990 MtrunA17_Chr8g0350881 27.230 213 104 5 117 278 268 480 7.68e-13 68.6
Msa1389990 MtrunA17_Chr8g0339451 23.099 355 186 13 3 274 109 459 8.09e-13 68.2
Msa1389990 MtrunA17_Chr6g0462551 30.348 201 100 8 115 277 265 463 9.39e-13 68.2
Msa1389990 MtrunA17_Chr4g0042931 36.634 101 50 2 111 197 258 358 1.02e-12 68.2
Msa1389990 MtrunA17_Chr8g0359821 26.728 217 117 5 100 281 271 480 1.34e-12 67.8
Msa1389990 MtrunA17_Chr7g0218791 29.902 204 102 7 105 276 248 442 1.47e-12 67.4
Msa1389990 MtrunA17_Chr7g0231631 28.643 199 113 5 109 278 61 259 2.06e-12 65.9
Msa1389990 MtrunA17_Chr8g0335141 28.155 206 101 6 115 274 260 464 2.10e-12 67.0
Msa1389990 MtrunA17_Chr6g0454251 37.736 106 59 1 100 198 270 375 2.56e-12 66.6
Msa1389990 MtrunA17_Chr5g0442561 24.324 222 112 6 111 279 255 473 3.12e-12 66.6
Msa1389990 MtrunA17_Chr4g0044501 27.536 207 107 7 112 278 272 475 3.16e-12 66.6
Msa1389990 MtrunA17_Chr5g0429681 29.048 210 101 7 115 282 300 503 3.26e-12 66.6
Msa1389990 MtrunA17_Chr5g0440421 27.830 212 108 7 113 279 283 494 5.45e-12 65.9
Msa1389990 MtrunA17_Chr5g0442601 25.292 257 124 9 85 279 626 876 5.95e-12 66.2
Msa1389990 MtrunA17_Chr5g0412101 43.333 90 45 2 115 198 281 370 6.38e-12 65.5
Msa1389990 MtrunA17_Chr7g0265141 27.358 212 107 6 115 279 275 486 6.84e-12 65.5
Msa1389990 MtrunA17_Chr4g0032331 28.804 184 97 7 104 254 245 427 6.97e-12 65.5
Msa1389990 MtrunA17_Chr7g0243811 42.391 92 43 3 112 193 237 328 7.07e-12 65.5
Msa1389990 MtrunA17_Chr5g0412131 44.444 90 44 2 115 198 280 369 1.34e-11 64.7
Msa1389990 MtrunA17_Chr7g0218311 25.806 217 111 4 112 278 267 483 1.61e-11 64.3
Msa1389990 MtrunA17_Chr5g0442491 23.715 253 127 7 88 279 228 475 2.32e-11 63.9
Msa1389990 MtrunA17_Chr5g0416741 27.014 211 111 6 111 278 273 483 3.27e-11 63.5
Msa1389990 MtrunA17_Chr7g0243611 37.838 111 54 4 113 208 134 244 3.53e-11 62.8
Msa1389990 MtrunA17_Chr7g0232311 24.340 341 181 13 8 275 124 460 5.65e-11 62.8
Msa1389990 MtrunA17_Chr7g0232341 30.688 189 81 8 106 247 249 434 8.00e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389990 AT4G15550.1 37.752 347 141 11 1 277 131 472 1.04e-58 195
Msa1389990 AT1G05560.1 37.808 365 128 11 1 284 115 461 8.83e-58 192
Msa1389990 AT1G05560.2 37.808 365 128 11 1 284 165 511 1.17e-57 193
Msa1389990 AT4G14090.1 34.503 342 150 11 1 277 122 454 5.19e-52 177
Msa1389990 AT1G05530.1 36.592 358 130 12 1 278 114 454 1.53e-50 173
Msa1389990 AT4G15500.1 31.412 347 165 9 2 279 121 463 7.85e-46 161
Msa1389990 AT4G15480.1 31.897 348 161 10 2 278 136 478 4.97e-44 156
Msa1389990 AT4G15490.1 30.595 353 169 11 2 283 124 471 4.65e-41 148
Msa1389990 AT3G21560.1 29.070 344 171 8 4 278 133 472 2.21e-40 147
Msa1389990 AT2G23250.1 30.178 338 171 11 3 278 101 435 1.11e-37 138
Msa1389990 AT1G05675.1 32.945 343 158 10 2 276 112 450 1.75e-37 138
Msa1389990 AT1G05680.1 31.871 342 161 10 2 275 112 449 6.95e-37 136
Msa1389990 AT2G23260.1 29.395 347 171 12 3 280 114 455 1.06e-35 133
Msa1389990 AT2G31790.1 30.435 345 165 12 2 275 113 453 8.06e-34 128
Msa1389990 AT2G31750.1 30.769 351 158 14 2 279 117 455 3.51e-33 126
Msa1389990 AT2G31750.2 30.769 351 158 14 2 279 117 455 7.58e-33 126
Msa1389990 AT2G43820.1 30.836 347 156 13 2 278 114 446 2.72e-30 119
Msa1389990 AT2G43840.2 28.490 351 165 13 2 281 114 449 1.53e-29 116
Msa1389990 AT2G43840.1 28.490 351 165 13 2 281 114 449 1.61e-29 116
Msa1389990 AT1G24100.1 27.586 348 176 13 2 278 116 458 1.75e-25 105
Msa1389990 AT2G28080.1 26.531 343 177 14 4 279 138 472 4.45e-25 104
Msa1389990 AT2G36970.1 27.729 339 179 14 4 278 134 470 1.57e-24 103
Msa1389990 AT2G30140.1 27.353 340 180 14 4 282 122 455 2.56e-24 102
Msa1389990 AT2G30140.2 27.729 339 179 14 4 282 122 454 5.21e-24 101
Msa1389990 AT2G30150.1 26.567 335 183 12 4 278 105 436 1.46e-21 94.4
Msa1389990 AT2G30150.2 26.567 335 183 12 4 278 121 452 1.71e-21 94.4
Msa1389990 AT1G22380.1 28.070 285 138 11 63 280 198 482 1.03e-17 83.2
Msa1389990 AT2G29730.1 27.519 258 136 9 58 279 221 463 1.65e-17 82.8
Msa1389990 AT1G22400.1 26.460 291 147 10 63 286 199 489 1.81e-17 82.8
Msa1389990 AT1G07260.1 29.353 201 106 5 115 279 272 472 2.79e-17 82.0
Msa1389990 AT1G22360.1 28.070 285 138 10 63 280 195 479 3.78e-17 81.6
Msa1389990 AT2G29710.1 27.404 208 113 6 108 279 258 463 2.16e-16 79.3
Msa1389990 AT5G05870.1 31.169 231 121 8 79 278 231 454 1.68e-15 76.6
Msa1389990 AT3G21750.1 28.814 236 111 7 97 279 238 469 1.86e-15 76.6
Msa1389990 AT1G22360.2 27.305 282 132 10 63 280 195 467 1.90e-15 76.6
Msa1389990 AT1G78270.1 31.383 188 100 7 103 261 275 462 2.86e-15 76.3
Msa1389990 AT3G46660.1 32.020 203 108 6 106 278 253 455 2.91e-15 75.9
Msa1389990 AT5G38040.1 30.198 202 112 5 106 278 248 449 4.42e-15 75.5
Msa1389990 AT5G38010.1 29.333 225 121 7 89 279 230 450 4.67e-15 75.5
Msa1389990 AT1G07250.1 26.699 206 109 5 112 278 270 472 1.95e-14 73.6
Msa1389990 AT1G07240.1 27.143 210 107 7 113 279 270 476 2.65e-14 73.2
Msa1389990 AT1G22340.1 30.000 200 110 7 113 282 286 485 2.71e-14 73.2
Msa1389990 AT5G37950.1 35.484 124 67 3 89 199 202 325 2.85e-14 72.4
Msa1389990 AT5G37950.2 35.484 124 67 3 89 199 196 319 3.33e-14 72.4
Msa1389990 AT2G29750.1 28.431 204 103 6 115 279 275 474 3.85e-14 72.8
Msa1389990 AT3G16520.3 29.703 202 99 6 115 277 261 458 1.11e-13 71.2
Msa1389990 AT2G29740.1 28.431 204 102 7 115 278 275 474 1.91e-13 70.5
Msa1389990 AT3G46670.1 29.864 221 121 6 89 275 225 445 2.63e-13 70.1
Msa1389990 AT5G17050.1 27.136 199 118 6 107 279 260 457 2.99e-13 70.1
Msa1389990 AT1G10400.1 28.856 201 109 8 108 277 264 461 5.22e-13 69.3
Msa1389990 AT3G55700.1 30.612 196 102 4 116 279 258 451 5.61e-13 69.3
Msa1389990 AT5G59590.1 25.882 255 150 7 59 278 199 449 9.24e-13 68.6
Msa1389990 AT3G11340.1 28.218 202 101 5 115 279 251 445 1.23e-12 68.2
Msa1389990 AT3G46680.1 26.180 233 116 7 89 276 226 447 2.55e-12 67.0
Msa1389990 AT3G21800.1 24.201 219 111 5 112 278 260 475 2.75e-12 67.0
Msa1389990 AT3G46700.1 37.255 102 55 2 107 199 243 344 2.87e-12 67.0
Msa1389990 AT3G16520.2 30.319 188 88 6 115 263 261 444 3.26e-12 67.0
Msa1389990 AT3G16520.1 30.319 188 88 6 115 263 261 444 3.95e-12 66.6
Msa1389990 AT4G36770.1 29.327 208 94 6 105 260 239 445 4.54e-12 66.6
Msa1389990 AT1G22370.2 30.769 195 106 6 115 280 283 477 4.56e-12 66.6
Msa1389990 AT5G05880.1 28.708 209 111 6 104 278 244 448 4.80e-12 66.2
Msa1389990 AT5G05860.1 28.571 203 101 7 115 280 254 449 4.92e-12 66.2
Msa1389990 AT5G59580.1 27.313 227 131 7 90 282 225 451 6.64e-12 65.9
Msa1389990 AT1G22370.1 30.769 195 106 6 115 280 113 307 9.85e-12 64.7
Msa1389990 AT3G21790.1 25.564 266 122 8 94 286 224 486 1.01e-11 65.5
Msa1389990 AT4G15280.2 22.519 262 137 5 69 279 260 506 1.08e-11 65.5
Msa1389990 AT5G05900.1 27.536 207 109 6 104 278 250 447 1.13e-11 65.1
Msa1389990 AT4G15280.1 22.519 262 137 5 69 279 228 474 1.22e-11 65.1
Msa1389990 AT5G12890.1 28.910 211 106 6 117 283 276 486 1.47e-11 65.1
Msa1389990 AT3G21780.1 26.606 218 106 7 112 278 254 468 1.54e-11 65.1
Msa1389990 AT1G73880.1 34.375 96 54 2 112 198 268 363 1.73e-11 64.7
Msa1389990 AT1G51210.1 37.647 85 52 1 115 198 269 353 2.05e-11 64.3
Msa1389990 AT3G46650.1 29.146 199 111 6 106 274 230 428 2.86e-11 63.9
Msa1389990 AT4G34131.1 28.079 203 103 7 115 277 279 478 3.58e-11 63.9
Msa1389990 AT3G55710.1 41.304 92 45 2 116 198 262 353 3.77e-11 63.5
Msa1389990 AT4G15260.1 25.463 216 112 7 113 279 140 355 4.03e-11 63.2
Msa1389990 AT4G34135.1 37.778 90 49 2 115 197 280 369 4.12e-11 63.5
Msa1389990 AT3G46720.1 36.458 96 59 1 106 199 245 340 4.18e-11 63.5
Msa1389990 AT3G46690.1 35.849 106 53 2 106 199 247 349 4.83e-11 63.5
Msa1389990 AT5G05890.1 27.358 212 110 6 104 278 248 452 5.57e-11 63.2

Find 73 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCTTTCACATTCTTCTT+TGG 0.160797 tig0021306:-119755 Msa1389990:CDS
TGAAAATCTTGTTGAAAATA+TGG 0.193622 tig0021306:+120172 None:intergenic
ACATAAACAACAGAAGATTT+TGG 0.246598 tig0021306:+119952 None:intergenic
GTTCTTTCACATTCTTCTTT+GGG 0.258852 tig0021306:-119754 Msa1389990:CDS
ATTCAATGGTAGTTTGGTTT+TGG 0.261860 tig0021306:+120281 None:intergenic
CTGGTAATTCAATGGTAGTT+TGG 0.310098 tig0021306:+120275 None:intergenic
ATTCTCTATTACTACTTTCA+TGG 0.315279 tig0021306:-120331 Msa1389990:CDS
TCTGTTGTTTATGTTTCTTT+TGG 0.336383 tig0021306:-119943 Msa1389990:CDS
TCTACACGTTAATGCTTCCT+TGG 0.338389 tig0021306:-120426 None:intergenic
AAGGTGTTTACGAGTATTAT+CGG 0.367438 tig0021306:+120127 None:intergenic
GTGGATGAGGATGGAATTGT+AGG 0.375063 tig0021306:-119579 Msa1389990:CDS
GAACTCGACTTTGGAAAGTT+TGG 0.378098 tig0021306:-119706 Msa1389990:intron
GGATGAAATTAGAAAGTGTT+TGG 0.378934 tig0021306:-119553 Msa1389990:CDS
TGAGAAAGAATGCAATGAAA+TGG 0.388985 tig0021306:-119494 Msa1389990:CDS
GTGATGGGGAGAGGAGAGAA+AGG 0.406369 tig0021306:-119525 Msa1389990:CDS
TAAAGATGAGTTGGAAAAGA+AGG 0.407665 tig0021306:-119809 Msa1389990:CDS
AAGGGGTTGGCTAGAGAGGC+AGG 0.409507 tig0021306:-119471 Msa1389990:CDS
GTCCCGCAGAAAAGAATCTA+AGG 0.412896 tig0021306:-119437 Msa1389990:CDS
AGTCATTTGAAGGTTGCAAT+AGG 0.422571 tig0021306:+119998 None:intergenic
CATTCAATATAGTCATTTGA+AGG 0.424031 tig0021306:+119988 None:intergenic
GTTGAAATTTAAAGATGAGT+TGG 0.425358 tig0021306:-119818 Msa1389990:CDS
TTGTGGTTGGAACTCGACTT+TGG 0.444492 tig0021306:-119715 Msa1389990:CDS
CAAGTGCGTTGTTGAATTGT+GGG 0.449033 tig0021306:-119879 Msa1389990:CDS
CTACACGTTAATGCTTCCTT+GGG 0.449608 tig0021306:-120425 None:intergenic
AAAGATGAGTTGGAAAAGAA+GGG 0.469951 tig0021306:-119808 Msa1389990:CDS
AGACAAGTCACCAGGATTTG+AGG 0.475080 tig0021306:+120204 None:intergenic
CTTCAAATGACTATATTGAA+TGG 0.480500 tig0021306:-119987 Msa1389990:CDS
CTCCGGTAGTACTTCCTTAG+CGG 0.492449 tig0021306:-120024 Msa1389990:intron
GCTAGAGAGGCAGGGAAGGA+AGG 0.496328 tig0021306:-119462 Msa1389990:CDS
AAAGTGTTTGGAAGTGGTGA+TGG 0.499781 tig0021306:-119541 Msa1389990:CDS
TTGGAAGTGGTGATGGGGAG+AGG 0.502226 tig0021306:-119534 Msa1389990:CDS
GATAGTGTGAAGGGCAATCC+TGG 0.502974 tig0021306:+120256 None:intergenic
GTTGGCTAGAGAGGCAGGGA+AGG 0.508792 tig0021306:-119466 Msa1389990:CDS
GCAAGTGCGTTGTTGAATTG+TGG 0.515077 tig0021306:-119880 Msa1389990:CDS
GGTGAGAGTTGATGATAAAG+TGG 0.520496 tig0021306:-119598 Msa1389990:CDS
CAAACTACCATTGAATTACC+AGG 0.521103 tig0021306:-120274 Msa1389990:CDS
ATGGAAGGGGTTGGCTAGAG+AGG 0.536943 tig0021306:-119475 Msa1389990:CDS
AGAATATCAAACACTGTGGC+GGG 0.545004 tig0021306:+120349 None:intergenic
AAGTGTTTGGAAGTGGTGAT+GGG 0.545845 tig0021306:-119540 Msa1389990:CDS
GTTTACGAGTATTATCGGAT+TGG 0.548691 tig0021306:+120132 None:intergenic
GGGCAATCCTGGTAATTCAA+TGG 0.555277 tig0021306:+120267 None:intergenic
AGTTGATGATAAAGTGGATG+AGG 0.557996 tig0021306:-119592 Msa1389990:CDS
GGAGAATGCATGCATGGATA+CGG 0.559681 tig0021306:-119391 Msa1389990:CDS
ACCTCCGCTCAGCTAAACTC+TGG 0.561490 tig0021306:-120378 Msa1389990:CDS
ATGAGGATGGAATTGTAGGA+GGG 0.563817 tig0021306:-119575 Msa1389990:CDS
CGAGCTACTTGTGGAGCCCA+AGG 0.565805 tig0021306:+120409 None:intergenic
GTCACGTGGCGATAGTGTGA+AGG 0.567114 tig0021306:+120246 None:intergenic
AAAGAATGCAATGAAATGGA+AGG 0.567197 tig0021306:-119490 Msa1389990:CDS
AATTAGAAAGTGTTTGGAAG+TGG 0.577533 tig0021306:-119547 Msa1389990:CDS
TTGAATCCACGAGCTACTTG+TGG 0.578084 tig0021306:+120400 None:intergenic
TGCAATGAAATGGAAGGGGT+TGG 0.578497 tig0021306:-119484 Msa1389990:CDS
AAGAATGCAATGAAATGGAA+GGG 0.580916 tig0021306:-119489 Msa1389990:CDS
AAGATGAGTTGGAAAAGAAG+GGG 0.583738 tig0021306:-119807 Msa1389990:CDS
AGAGAGGCAGGGAAGGAAGG+TGG 0.586569 tig0021306:-119459 Msa1389990:CDS
GATGAGGATGGAATTGTAGG+AGG 0.587770 tig0021306:-119576 Msa1389990:CDS
GAGAATATCAAACACTGTGG+CGG 0.589449 tig0021306:+120348 None:intergenic
AGTGAAGTGGTGTTCTCAAG+TGG 0.591682 tig0021306:-119779 Msa1389990:CDS
ATTATTGGAGAATGCATGCA+TGG 0.597677 tig0021306:-119397 Msa1389990:CDS
AGAAGGGGAAGATAGTGAAG+TGG 0.600131 tig0021306:-119792 Msa1389990:CDS
TGGGCTCCACAAGTAGCTCG+TGG 0.600705 tig0021306:-120406 Msa1389990:CDS
AAAACAAAAGACAAGTCACC+AGG 0.608502 tig0021306:+120196 None:intergenic
AGAATGCAATGAAATGGAAG+GGG 0.608881 tig0021306:-119488 Msa1389990:CDS
AGGGGTTGGCTAGAGAGGCA+GGG 0.613392 tig0021306:-119470 Msa1389990:CDS
GGGGAGAGGAGAGAAAGGAG+AGG 0.615489 tig0021306:-119520 Msa1389990:CDS
GATGATAAAGTGGATGAGGA+TGG 0.616208 tig0021306:-119588 Msa1389990:CDS
TCACGTGGCGATAGTGTGAA+GGG 0.616536 tig0021306:+120247 None:intergenic
TGAGGATGGAATTGTAGGAG+GGG 0.617822 tig0021306:-119574 Msa1389990:CDS
TCCAGAGTTTAGCTGAGCGG+AGG 0.617889 tig0021306:+120377 None:intergenic
GTTGCAATAGGTCACCGCTA+AGG 0.640043 tig0021306:+120010 None:intergenic
AGTGTTTGGAAGTGGTGATG+GGG 0.640210 tig0021306:-119539 Msa1389990:CDS
GAAGTGGTGTTCTCAAGTGG+AGG 0.648671 tig0021306:-119776 Msa1389990:CDS
CAATCCAGAGTTTAGCTGAG+CGG 0.681614 tig0021306:+120374 None:intergenic
ATAGAGAATATCAAACACTG+TGG 0.766397 tig0021306:+120345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGGATGATATATTAT+TGG - tig0021306:120383-120402 Msa1389990:CDS 15.0%
!!! ATTTTTGGATGATATATTAT+TGG - tig0021306:120383-120402 Msa1389990:CDS 15.0%
!!! TTTGAGGTAAATAAAAAAGA+AGG + tig0021306:119578-119597 None:intergenic 20.0%
!! TGAAAATCTTGTTGAAAATA+TGG + tig0021306:119626-119645 None:intergenic 20.0%
!!! AAAGAATCTAAGGAAATTTT+TGG - tig0021306:120368-120387 Msa1389990:CDS 20.0%
!!! TTTGAGGTAAATAAAAAAGA+AGG + tig0021306:119578-119597 None:intergenic 20.0%
!! TGAAAATCTTGTTGAAAATA+TGG + tig0021306:119626-119645 None:intergenic 20.0%
!!! AAAGAATCTAAGGAAATTTT+TGG - tig0021306:120368-120387 Msa1389990:CDS 20.0%
! ATTCTCTATTACTACTTTCA+TGG - tig0021306:119464-119483 Msa1389990:CDS 25.0%
!!! TTTGGTTTTGGTTATTGATA+TGG + tig0021306:119499-119518 None:intergenic 25.0%
!!! TTTTTATTTACCTCAAATCC+TGG - tig0021306:119581-119600 Msa1389990:CDS 25.0%
! CATTCAATATAGTCATTTGA+AGG + tig0021306:119810-119829 None:intergenic 25.0%
! CTTCAAATGACTATATTGAA+TGG - tig0021306:119808-119827 Msa1389990:CDS 25.0%
!! ACATAAACAACAGAAGATTT+TGG + tig0021306:119846-119865 None:intergenic 25.0%
!!! TCTGTTGTTTATGTTTCTTT+TGG - tig0021306:119852-119871 Msa1389990:CDS 25.0%
! GTTGAAATTTAAAGATGAGT+TGG - tig0021306:119977-119996 Msa1389990:CDS 25.0%
! ATTCTCTATTACTACTTTCA+TGG - tig0021306:119464-119483 Msa1389990:CDS 25.0%
!!! TTTGGTTTTGGTTATTGATA+TGG + tig0021306:119499-119518 None:intergenic 25.0%
!!! TTTTTATTTACCTCAAATCC+TGG - tig0021306:119581-119600 Msa1389990:CDS 25.0%
! CATTCAATATAGTCATTTGA+AGG + tig0021306:119810-119829 None:intergenic 25.0%
! CTTCAAATGACTATATTGAA+TGG - tig0021306:119808-119827 Msa1389990:CDS 25.0%
!! ACATAAACAACAGAAGATTT+TGG + tig0021306:119846-119865 None:intergenic 25.0%
!!! TCTGTTGTTTATGTTTCTTT+TGG - tig0021306:119852-119871 Msa1389990:CDS 25.0%
! GTTGAAATTTAAAGATGAGT+TGG - tig0021306:119977-119996 Msa1389990:CDS 25.0%
ATAGAGAATATCAAACACTG+TGG + tig0021306:119453-119472 None:intergenic 30.0%
!! ATTCAATGGTAGTTTGGTTT+TGG + tig0021306:119517-119536 None:intergenic 30.0%
! AAGGTGTTTACGAGTATTAT+CGG + tig0021306:119671-119690 None:intergenic 30.0%
! TAAAGATGAGTTGGAAAAGA+AGG - tig0021306:119986-120005 Msa1389990:CDS 30.0%
! AAAGATGAGTTGGAAAAGAA+GGG - tig0021306:119987-120006 Msa1389990:CDS 30.0%
GTTCTTTCACATTCTTCTTT+GGG - tig0021306:120041-120060 Msa1389990:intron 30.0%
!!! GTTGTTTTTTTGACTCATTG+TGG - tig0021306:120063-120082 Msa1389990:intron 30.0%
!!! TTTTTTTGACTCATTGTGGT+TGG - tig0021306:120067-120086 Msa1389990:intron 30.0%
CAAAACTAATTGAAGATGTG+TGG - tig0021306:120166-120185 Msa1389990:CDS 30.0%
!! GGATGAAATTAGAAAGTGTT+TGG - tig0021306:120242-120261 Msa1389990:CDS 30.0%
!! AATTAGAAAGTGTTTGGAAG+TGG - tig0021306:120248-120267 Msa1389990:CDS 30.0%
TGAGAAAGAATGCAATGAAA+TGG - tig0021306:120301-120320 Msa1389990:CDS 30.0%
AAAGAATGCAATGAAATGGA+AGG - tig0021306:120305-120324 Msa1389990:CDS 30.0%
AAGAATGCAATGAAATGGAA+GGG - tig0021306:120306-120325 Msa1389990:CDS 30.0%
! TTTCCTTAGATTCTTTTCTG+CGG + tig0021306:120364-120383 None:intergenic 30.0%
ATAGAGAATATCAAACACTG+TGG + tig0021306:119453-119472 None:intergenic 30.0%
!! ATTCAATGGTAGTTTGGTTT+TGG + tig0021306:119517-119536 None:intergenic 30.0%
! AAGGTGTTTACGAGTATTAT+CGG + tig0021306:119671-119690 None:intergenic 30.0%
! TAAAGATGAGTTGGAAAAGA+AGG - tig0021306:119986-120005 Msa1389990:CDS 30.0%
! AAAGATGAGTTGGAAAAGAA+GGG - tig0021306:119987-120006 Msa1389990:CDS 30.0%
GTTCTTTCACATTCTTCTTT+GGG - tig0021306:120041-120060 Msa1389990:intron 30.0%
!!! GTTGTTTTTTTGACTCATTG+TGG - tig0021306:120063-120082 Msa1389990:intron 30.0%
!!! TTTTTTTGACTCATTGTGGT+TGG - tig0021306:120067-120086 Msa1389990:intron 30.0%
CAAAACTAATTGAAGATGTG+TGG - tig0021306:120166-120185 Msa1389990:CDS 30.0%
!! GGATGAAATTAGAAAGTGTT+TGG - tig0021306:120242-120261 Msa1389990:CDS 30.0%
!! AATTAGAAAGTGTTTGGAAG+TGG - tig0021306:120248-120267 Msa1389990:CDS 30.0%
TGAGAAAGAATGCAATGAAA+TGG - tig0021306:120301-120320 Msa1389990:CDS 30.0%
AAAGAATGCAATGAAATGGA+AGG - tig0021306:120305-120324 Msa1389990:CDS 30.0%
AAGAATGCAATGAAATGGAA+GGG - tig0021306:120306-120325 Msa1389990:CDS 30.0%
! TTTCCTTAGATTCTTTTCTG+CGG + tig0021306:120364-120383 None:intergenic 30.0%
!!! TGGTAGTTTGGTTTTGGTTT+TGG + tig0021306:119511-119530 None:intergenic 35.0%
CTGGTAATTCAATGGTAGTT+TGG + tig0021306:119523-119542 None:intergenic 35.0%
CAAACTACCATTGAATTACC+AGG - tig0021306:119521-119540 Msa1389990:CDS 35.0%
! AAAAAAGAAGGTATGTCACG+TGG + tig0021306:119566-119585 None:intergenic 35.0%
AAAACAAAAGACAAGTCACC+AGG + tig0021306:119602-119621 None:intergenic 35.0%
GTTTACGAGTATTATCGGAT+TGG + tig0021306:119666-119685 None:intergenic 35.0%
GAGGTTATGATGAGTATCAA+CGG + tig0021306:119723-119742 None:intergenic 35.0%
TAACCTCAAATGATTCCCAT+CGG - tig0021306:119736-119755 Msa1389990:CDS 35.0%
AGTCATTTGAAGGTTGCAAT+AGG + tig0021306:119800-119819 None:intergenic 35.0%
! ATTGTGGGTTTTCATTCTTG+TGG - tig0021306:119931-119950 Msa1389990:CDS 35.0%
! TTGTGGGTTTTCATTCTTGT+GGG - tig0021306:119932-119951 Msa1389990:CDS 35.0%
! AAGATGAGTTGGAAAAGAAG+GGG - tig0021306:119988-120007 Msa1389990:CDS 35.0%
GGTTCTTTCACATTCTTCTT+TGG - tig0021306:120040-120059 Msa1389990:intron 35.0%
! GACTTTGGAAAGTTTGGTAT+CGG - tig0021306:120095-120114 Msa1389990:intron 35.0%
! ACTTTGGAAAGTTTGGTATC+GGG - tig0021306:120096-120115 Msa1389990:intron 35.0%
ATTGAAGATGTGTGGAAGAT+AGG - tig0021306:120174-120193 Msa1389990:CDS 35.0%
TTGAAGATGTGTGGAAGATA+GGG - tig0021306:120175-120194 Msa1389990:CDS 35.0%
!! AGTTGATGATAAAGTGGATG+AGG - tig0021306:120203-120222 Msa1389990:CDS 35.0%
AGAATGCAATGAAATGGAAG+GGG - tig0021306:120307-120326 Msa1389990:CDS 35.0%
! TTCCTTAGATTCTTTTCTGC+GGG + tig0021306:120363-120382 None:intergenic 35.0%
ATTATTGGAGAATGCATGCA+TGG - tig0021306:120398-120417 Msa1389990:CDS 35.0%
!!! TGGTAGTTTGGTTTTGGTTT+TGG + tig0021306:119511-119530 None:intergenic 35.0%
CTGGTAATTCAATGGTAGTT+TGG + tig0021306:119523-119542 None:intergenic 35.0%
CAAACTACCATTGAATTACC+AGG - tig0021306:119521-119540 Msa1389990:CDS 35.0%
! AAAAAAGAAGGTATGTCACG+TGG + tig0021306:119566-119585 None:intergenic 35.0%
AAAACAAAAGACAAGTCACC+AGG + tig0021306:119602-119621 None:intergenic 35.0%
GTTTACGAGTATTATCGGAT+TGG + tig0021306:119666-119685 None:intergenic 35.0%
GAGGTTATGATGAGTATCAA+CGG + tig0021306:119723-119742 None:intergenic 35.0%
TAACCTCAAATGATTCCCAT+CGG - tig0021306:119736-119755 Msa1389990:CDS 35.0%
AGTCATTTGAAGGTTGCAAT+AGG + tig0021306:119800-119819 None:intergenic 35.0%
! ATTGTGGGTTTTCATTCTTG+TGG - tig0021306:119931-119950 Msa1389990:CDS 35.0%
! TTGTGGGTTTTCATTCTTGT+GGG - tig0021306:119932-119951 Msa1389990:CDS 35.0%
! AAGATGAGTTGGAAAAGAAG+GGG - tig0021306:119988-120007 Msa1389990:CDS 35.0%
GGTTCTTTCACATTCTTCTT+TGG - tig0021306:120040-120059 Msa1389990:intron 35.0%
! GACTTTGGAAAGTTTGGTAT+CGG - tig0021306:120095-120114 Msa1389990:intron 35.0%
! ACTTTGGAAAGTTTGGTATC+GGG - tig0021306:120096-120115 Msa1389990:intron 35.0%
ATTGAAGATGTGTGGAAGAT+AGG - tig0021306:120174-120193 Msa1389990:CDS 35.0%
TTGAAGATGTGTGGAAGATA+GGG - tig0021306:120175-120194 Msa1389990:CDS 35.0%
!! AGTTGATGATAAAGTGGATG+AGG - tig0021306:120203-120222 Msa1389990:CDS 35.0%
AGAATGCAATGAAATGGAAG+GGG - tig0021306:120307-120326 Msa1389990:CDS 35.0%
! TTCCTTAGATTCTTTTCTGC+GGG + tig0021306:120363-120382 None:intergenic 35.0%
ATTATTGGAGAATGCATGCA+TGG - tig0021306:120398-120417 Msa1389990:CDS 35.0%
AGAATATCAAACACTGTGGC+GGG + tig0021306:119449-119468 None:intergenic 40.0%
GAGAATATCAAACACTGTGG+CGG + tig0021306:119450-119469 None:intergenic 40.0%
!! CGTAAACACCTTTGAAGCTT+TGG - tig0021306:119679-119698 Msa1389990:intron 40.0%
CAAGTGCGTTGTTGAATTGT+GGG - tig0021306:119916-119935 Msa1389990:CDS 40.0%
GGTCATGAGAGAAAAAGAAG+AGG - tig0021306:119953-119972 Msa1389990:CDS 40.0%
! GAACTCGACTTTGGAAAGTT+TGG - tig0021306:120089-120108 Msa1389990:intron 40.0%
! CTTTGGAAAGTTTGGTATCG+GGG - tig0021306:120097-120116 Msa1389990:intron 40.0%
! TTTGGAAAGTTTGGTATCGG+GGG - tig0021306:120098-120117 Msa1389990:intron 40.0%
! GTCTTTTGATCAGTCCATTG+AGG + tig0021306:120141-120160 None:intergenic 40.0%
TGAAGATGTGTGGAAGATAG+GGG - tig0021306:120176-120195 Msa1389990:CDS 40.0%
!! GGTGAGAGTTGATGATAAAG+TGG - tig0021306:120197-120216 Msa1389990:CDS 40.0%
GATGATAAAGTGGATGAGGA+TGG - tig0021306:120207-120226 Msa1389990:CDS 40.0%
ATGAGGATGGAATTGTAGGA+GGG - tig0021306:120220-120239 Msa1389990:CDS 40.0%
! AAAGTGTTTGGAAGTGGTGA+TGG - tig0021306:120254-120273 Msa1389990:CDS 40.0%
AAGTGTTTGGAAGTGGTGAT+GGG - tig0021306:120255-120274 Msa1389990:CDS 40.0%
AGAATATCAAACACTGTGGC+GGG + tig0021306:119449-119468 None:intergenic 40.0%
GAGAATATCAAACACTGTGG+CGG + tig0021306:119450-119469 None:intergenic 40.0%
!! CGTAAACACCTTTGAAGCTT+TGG - tig0021306:119679-119698 Msa1389990:intron 40.0%
CAAGTGCGTTGTTGAATTGT+GGG - tig0021306:119916-119935 Msa1389990:CDS 40.0%
GGTCATGAGAGAAAAAGAAG+AGG - tig0021306:119953-119972 Msa1389990:CDS 40.0%
! GAACTCGACTTTGGAAAGTT+TGG - tig0021306:120089-120108 Msa1389990:intron 40.0%
! CTTTGGAAAGTTTGGTATCG+GGG - tig0021306:120097-120116 Msa1389990:intron 40.0%
! TTTGGAAAGTTTGGTATCGG+GGG - tig0021306:120098-120117 Msa1389990:intron 40.0%
! GTCTTTTGATCAGTCCATTG+AGG + tig0021306:120141-120160 None:intergenic 40.0%
TGAAGATGTGTGGAAGATAG+GGG - tig0021306:120176-120195 Msa1389990:CDS 40.0%
!! GGTGAGAGTTGATGATAAAG+TGG - tig0021306:120197-120216 Msa1389990:CDS 40.0%
GATGATAAAGTGGATGAGGA+TGG - tig0021306:120207-120226 Msa1389990:CDS 40.0%
ATGAGGATGGAATTGTAGGA+GGG - tig0021306:120220-120239 Msa1389990:CDS 40.0%
! AAAGTGTTTGGAAGTGGTGA+TGG - tig0021306:120254-120273 Msa1389990:CDS 40.0%
AAGTGTTTGGAAGTGGTGAT+GGG - tig0021306:120255-120274 Msa1389990:CDS 40.0%
TTGAATCCACGAGCTACTTG+TGG + tig0021306:119398-119417 None:intergenic 45.0%
CAATCCAGAGTTTAGCTGAG+CGG + tig0021306:119424-119443 None:intergenic 45.0%
GGGCAATCCTGGTAATTCAA+TGG + tig0021306:119531-119550 None:intergenic 45.0%
AGACAAGTCACCAGGATTTG+AGG + tig0021306:119594-119613 None:intergenic 45.0%
GCAAGTGCGTTGTTGAATTG+TGG - tig0021306:119915-119934 Msa1389990:CDS 45.0%
AGAAGGGGAAGATAGTGAAG+TGG - tig0021306:120003-120022 Msa1389990:CDS 45.0%
AGTGAAGTGGTGTTCTCAAG+TGG - tig0021306:120016-120035 Msa1389990:CDS 45.0%
TTGTGGTTGGAACTCGACTT+TGG - tig0021306:120080-120099 Msa1389990:intron 45.0%
CATTGAGGAAATGCCACTAG+AGG + tig0021306:120126-120145 None:intergenic 45.0%
CTCTAGTGGCATTTCCTCAA+TGG - tig0021306:120124-120143 Msa1389990:intron 45.0%
GTGGATGAGGATGGAATTGT+AGG - tig0021306:120216-120235 Msa1389990:CDS 45.0%
GATGAGGATGGAATTGTAGG+AGG - tig0021306:120219-120238 Msa1389990:CDS 45.0%
TGAGGATGGAATTGTAGGAG+GGG - tig0021306:120221-120240 Msa1389990:CDS 45.0%
! AGTGTTTGGAAGTGGTGATG+GGG - tig0021306:120256-120275 Msa1389990:CDS 45.0%
TGCAATGAAATGGAAGGGGT+TGG - tig0021306:120311-120330 Msa1389990:CDS 45.0%
GTCCCGCAGAAAAGAATCTA+AGG - tig0021306:120358-120377 Msa1389990:CDS 45.0%
GGAGAATGCATGCATGGATA+CGG - tig0021306:120404-120423 Msa1389990:CDS 45.0%
TTGAATCCACGAGCTACTTG+TGG + tig0021306:119398-119417 None:intergenic 45.0%
CAATCCAGAGTTTAGCTGAG+CGG + tig0021306:119424-119443 None:intergenic 45.0%
GGGCAATCCTGGTAATTCAA+TGG + tig0021306:119531-119550 None:intergenic 45.0%
AGACAAGTCACCAGGATTTG+AGG + tig0021306:119594-119613 None:intergenic 45.0%
GCAAGTGCGTTGTTGAATTG+TGG - tig0021306:119915-119934 Msa1389990:CDS 45.0%
AGAAGGGGAAGATAGTGAAG+TGG - tig0021306:120003-120022 Msa1389990:CDS 45.0%
AGTGAAGTGGTGTTCTCAAG+TGG - tig0021306:120016-120035 Msa1389990:CDS 45.0%
TTGTGGTTGGAACTCGACTT+TGG - tig0021306:120080-120099 Msa1389990:intron 45.0%
CATTGAGGAAATGCCACTAG+AGG + tig0021306:120126-120145 None:intergenic 45.0%
CTCTAGTGGCATTTCCTCAA+TGG - tig0021306:120124-120143 Msa1389990:intron 45.0%
GTGGATGAGGATGGAATTGT+AGG - tig0021306:120216-120235 Msa1389990:CDS 45.0%
GATGAGGATGGAATTGTAGG+AGG - tig0021306:120219-120238 Msa1389990:CDS 45.0%
TGAGGATGGAATTGTAGGAG+GGG - tig0021306:120221-120240 Msa1389990:CDS 45.0%
! AGTGTTTGGAAGTGGTGATG+GGG - tig0021306:120256-120275 Msa1389990:CDS 45.0%
TGCAATGAAATGGAAGGGGT+TGG - tig0021306:120311-120330 Msa1389990:CDS 45.0%
GTCCCGCAGAAAAGAATCTA+AGG - tig0021306:120358-120377 Msa1389990:CDS 45.0%
GGAGAATGCATGCATGGATA+CGG - tig0021306:120404-120423 Msa1389990:CDS 45.0%
GATAGTGTGAAGGGCAATCC+TGG + tig0021306:119542-119561 None:intergenic 50.0%
TCACGTGGCGATAGTGTGAA+GGG + tig0021306:119551-119570 None:intergenic 50.0%
! CTCTGGCTCCAAAGCTTCAA+AGG + tig0021306:119690-119709 None:intergenic 50.0%
!! CTTTGAAGCTTTGGAGCCAG+AGG - tig0021306:119688-119707 Msa1389990:intron 50.0%
GGTCCGATGGGAATCATTTG+AGG + tig0021306:119742-119761 None:intergenic 50.0%
GAGGGAATCAATGGTCCGAT+GGG + tig0021306:119754-119773 None:intergenic 50.0%
!! ATCGGACCATTGATTCCCTC+CGG - tig0021306:119754-119773 Msa1389990:CDS 50.0%
GTACTACCGGAGGGAATCAA+TGG + tig0021306:119763-119782 None:intergenic 50.0%
!! GCTAAGGAAGTACTACCGGA+GGG + tig0021306:119772-119791 None:intergenic 50.0%
CTCCGGTAGTACTTCCTTAG+CGG - tig0021306:119771-119790 Msa1389990:CDS 50.0%
!! CACCGCTAAGGAAGTACTAC+CGG + tig0021306:119776-119795 None:intergenic 50.0%
GTTGCAATAGGTCACCGCTA+AGG + tig0021306:119788-119807 None:intergenic 50.0%
GAAGTGGTGTTCTCAAGTGG+AGG - tig0021306:120019-120038 Msa1389990:intron 50.0%
GATAGTGTGAAGGGCAATCC+TGG + tig0021306:119542-119561 None:intergenic 50.0%
TCACGTGGCGATAGTGTGAA+GGG + tig0021306:119551-119570 None:intergenic 50.0%
! CTCTGGCTCCAAAGCTTCAA+AGG + tig0021306:119690-119709 None:intergenic 50.0%
!! CTTTGAAGCTTTGGAGCCAG+AGG - tig0021306:119688-119707 Msa1389990:intron 50.0%
GGTCCGATGGGAATCATTTG+AGG + tig0021306:119742-119761 None:intergenic 50.0%
GAGGGAATCAATGGTCCGAT+GGG + tig0021306:119754-119773 None:intergenic 50.0%
!! ATCGGACCATTGATTCCCTC+CGG - tig0021306:119754-119773 Msa1389990:CDS 50.0%
GTACTACCGGAGGGAATCAA+TGG + tig0021306:119763-119782 None:intergenic 50.0%
!! GCTAAGGAAGTACTACCGGA+GGG + tig0021306:119772-119791 None:intergenic 50.0%
CTCCGGTAGTACTTCCTTAG+CGG - tig0021306:119771-119790 Msa1389990:CDS 50.0%
!! CACCGCTAAGGAAGTACTAC+CGG + tig0021306:119776-119795 None:intergenic 50.0%
GTTGCAATAGGTCACCGCTA+AGG + tig0021306:119788-119807 None:intergenic 50.0%
GAAGTGGTGTTCTCAAGTGG+AGG - tig0021306:120019-120038 Msa1389990:intron 50.0%
ACCTCCGCTCAGCTAAACTC+TGG - tig0021306:119417-119436 Msa1389990:CDS 55.0%
TCCAGAGTTTAGCTGAGCGG+AGG + tig0021306:119421-119440 None:intergenic 55.0%
GTCACGTGGCGATAGTGTGA+AGG + tig0021306:119552-119571 None:intergenic 55.0%
!! TCAACGGCTCTAAGTGCCTC+TGG + tig0021306:119707-119726 None:intergenic 55.0%
GGAGGGAATCAATGGTCCGA+TGG + tig0021306:119755-119774 None:intergenic 55.0%
!! CGCTAAGGAAGTACTACCGG+AGG + tig0021306:119773-119792 None:intergenic 55.0%
!! TTGGAAGTGGTGATGGGGAG+AGG - tig0021306:120261-120280 Msa1389990:CDS 55.0%
! GTGATGGGGAGAGGAGAGAA+AGG - tig0021306:120270-120289 Msa1389990:CDS 55.0%
!! ATGGAAGGGGTTGGCTAGAG+AGG - tig0021306:120320-120339 Msa1389990:CDS 55.0%
ACCTCCGCTCAGCTAAACTC+TGG - tig0021306:119417-119436 Msa1389990:CDS 55.0%
TCCAGAGTTTAGCTGAGCGG+AGG + tig0021306:119421-119440 None:intergenic 55.0%
GTCACGTGGCGATAGTGTGA+AGG + tig0021306:119552-119571 None:intergenic 55.0%
!! TCAACGGCTCTAAGTGCCTC+TGG + tig0021306:119707-119726 None:intergenic 55.0%
GGAGGGAATCAATGGTCCGA+TGG + tig0021306:119755-119774 None:intergenic 55.0%
!! CGCTAAGGAAGTACTACCGG+AGG + tig0021306:119773-119792 None:intergenic 55.0%
!! TTGGAAGTGGTGATGGGGAG+AGG - tig0021306:120261-120280 Msa1389990:CDS 55.0%
! GTGATGGGGAGAGGAGAGAA+AGG - tig0021306:120270-120289 Msa1389990:CDS 55.0%
!! ATGGAAGGGGTTGGCTAGAG+AGG - tig0021306:120320-120339 Msa1389990:CDS 55.0%
CGAGCTACTTGTGGAGCCCA+AGG + tig0021306:119389-119408 None:intergenic 60.0%
TGGGCTCCACAAGTAGCTCG+TGG - tig0021306:119389-119408 Msa1389990:CDS 60.0%
! GGTATCGGGGGTTCCTCTAG+TGG - tig0021306:120110-120129 Msa1389990:intron 60.0%
GGGGAGAGGAGAGAAAGGAG+AGG - tig0021306:120275-120294 Msa1389990:CDS 60.0%
!! AAGGGGTTGGCTAGAGAGGC+AGG - tig0021306:120324-120343 Msa1389990:CDS 60.0%
!! AGGGGTTGGCTAGAGAGGCA+GGG - tig0021306:120325-120344 Msa1389990:CDS 60.0%
GTTGGCTAGAGAGGCAGGGA+AGG - tig0021306:120329-120348 Msa1389990:CDS 60.0%
GCTAGAGAGGCAGGGAAGGA+AGG - tig0021306:120333-120352 Msa1389990:CDS 60.0%
AGAGAGGCAGGGAAGGAAGG+TGG - tig0021306:120336-120355 Msa1389990:CDS 60.0%
CGAGCTACTTGTGGAGCCCA+AGG + tig0021306:119389-119408 None:intergenic 60.0%
TGGGCTCCACAAGTAGCTCG+TGG - tig0021306:119389-119408 Msa1389990:CDS 60.0%
! GGTATCGGGGGTTCCTCTAG+TGG - tig0021306:120110-120129 Msa1389990:intron 60.0%
GGGGAGAGGAGAGAAAGGAG+AGG - tig0021306:120275-120294 Msa1389990:CDS 60.0%
!! AAGGGGTTGGCTAGAGAGGC+AGG - tig0021306:120324-120343 Msa1389990:CDS 60.0%
!! AGGGGTTGGCTAGAGAGGCA+GGG - tig0021306:120325-120344 Msa1389990:CDS 60.0%
GTTGGCTAGAGAGGCAGGGA+AGG - tig0021306:120329-120348 Msa1389990:CDS 60.0%
GCTAGAGAGGCAGGGAAGGA+AGG - tig0021306:120333-120352 Msa1389990:CDS 60.0%
AGAGAGGCAGGGAAGGAAGG+TGG - tig0021306:120336-120355 Msa1389990:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0021306 gene 119380 120437 119380 ID=Msa1389990;Name=Msa1389990
tig0021306 mRNA 119380 120437 119380 ID=Msa1389990-mRNA-1;Parent=Msa1389990;Name=Msa1389990-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|3|0|290
tig0021306 exon 120138 120437 120138 ID=Msa1389990-mRNA-1:exon:11948;Parent=Msa1389990-mRNA-1
tig0021306 exon 119707 120037 119707 ID=Msa1389990-mRNA-1:exon:11947;Parent=Msa1389990-mRNA-1
tig0021306 exon 119380 119621 119380 ID=Msa1389990-mRNA-1:exon:11946;Parent=Msa1389990-mRNA-1
tig0021306 CDS 120138 120437 120138 ID=Msa1389990-mRNA-1:cds;Parent=Msa1389990-mRNA-1
tig0021306 CDS 119707 120037 119707 ID=Msa1389990-mRNA-1:cds;Parent=Msa1389990-mRNA-1
tig0021306 CDS 119380 119621 119380 ID=Msa1389990-mRNA-1:cds;Parent=Msa1389990-mRNA-1
Gene Sequence

>Msa1389990

ATGCTTCCTTGGGCTCCACAAGTAGCTCGTGGATTCAACCTCCGCTCAGCTAAACTCTGGATTGAACCCGCCACAGTGTTTGATATTCTCTATTACTACTTTCATGGTTATAGTAACCATATCAATAACCAAAACCAAAACCAAACTACCATTGAATTACCAGGATTGCCCTTCACACTATCGCCACGTGACATACCTTCTTTTTTATTTACCTCAAATCCTGGTGACTTGTCTTTTGTTTTTCCATATTTTCAACAAGATTTTCATGAACTCGATGTTGAAACCAATCCGATAATACTCTACTTCCTTAGCGGTGACCTATTGCAACCTTCAAATGACTATATTGAATGGTTGAACTCAAAGCCAAAATCTTCTGTTGTTTATGTTTCTTTTGGTAGTTACTTTGTTTTGTCTAAGCGACAAACAGACGAAATTGCAAGTGCGTTGTTGAATTGTGGGTTTTCATTCTTGTGGGTCATGAGAGAAAAAGAAGAGGAGTTGAAATTTAAAGATGAGTTGGAAAAGAAGGGGAAGATAGTGAAGTGGTGTTCTCAAGTGGAGGTTCTTTCACATTCTTCTTTGGGTTGTTTTTTTGACTCATTGTGGTTGGAACTCGACTTTGGAAAGTTTGGGGTGAGAGTTGATGATAAAGTGGATGAGGATGGAATTGTAGGAGGGGATGAAATTAGAAAGTGTTTGGAAGTGGTGATGGGGAGAGGAGAGAAAGGAGAGGAATTGAGAAAGAATGCAATGAAATGGAAGGGGTTGGCTAGAGAGGCAGGGAAGGAAGGTGGTCCCGCAGAAAAGAATCTAAGGAAATTTTTGGATGATATATTATTGGAGAATGCATGCATGGATACGGCTGAAAATTGA
Protein sequence

>Msa1389990

MLPWAPQVARGFNLRSAKLWIEPATVFDILYYYFHGYSNHINNQNQNQTTIELPGLPFTLSPRDIPSFLFTSNPGDLSFVFPYFQQDFHELDVETNPIILYFLSGDLLQPSNDYIEWLNSKPKSSVVYVSFGSYFVLSKRQTDEIASALLNCGFSFLWVMREKEEELKFKDELEKKGKIVKWCSQVEVLSHSSLGCFFDSLWLELDFGKFGVRVDDKVDEDGIVGGDEIRKCLEVVMGRGEKGEELRKNAMKWKGLAREAGKEGGPAEKNLRKFLDDILLENACMDTAEN*