AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038420 MtrunA17_Chr7g0274021 93.723 462 25 3 1 461 1 459 0.0 887
Msa1038420 MtrunA17_Chr1g0148851 32.829 463 273 12 9 454 5 446 5.33e-72 234
Msa1038420 MtrunA17_Chr8g0378151 25.176 425 267 14 29 439 32 419 3.69e-29 119
Msa1038420 MtrunA17_Chr2g0298091 25.727 447 268 19 16 439 19 424 9.19e-26 109
Msa1038420 MtrunA17_Chr8g0386141 27.405 343 213 12 31 354 28 353 1.52e-24 105
Msa1038420 MtrunA17_Chr4g0072041 27.371 369 233 12 8 355 13 367 5.37e-24 104
Msa1038420 MtrunA17_Chr2g0334001 23.913 414 275 13 39 436 33 422 8.44e-24 103
Msa1038420 MtrunA17_Chr3g0132831 25.113 442 278 17 16 439 18 424 6.01e-23 100
Msa1038420 MtrunA17_Chr1g0163441 25.280 447 270 19 16 439 18 423 4.51e-22 98.2
Msa1038420 MtrunA17_Chr8g0371821 26.190 336 205 9 41 355 35 348 7.85e-22 97.4
Msa1038420 MtrunA17_Chr3g0134091 27.638 398 258 11 61 445 65 445 2.60e-21 96.3
Msa1038420 MtrunA17_Chr4g0001861 23.659 410 282 11 39 436 33 423 3.01e-21 95.9
Msa1038420 MtrunA17_Chr7g0224391 23.288 365 250 8 6 354 12 362 7.13e-21 94.7
Msa1038420 MtrunA17_Chr4g0054081 25.301 415 266 14 46 433 45 442 1.31e-20 94.0
Msa1038420 MtrunA17_Chr3g0132001 25.474 369 245 13 1 354 6 359 1.17e-19 90.9
Msa1038420 MtrunA17_Chr8g0376901 26.000 350 217 12 8 340 2 326 2.15e-17 84.3
Msa1038420 MtrunA17_Chr4g0027071 24.419 344 233 11 31 355 33 368 8.29e-17 82.4
Msa1038420 MtrunA17_Chr5g0433641 24.845 322 204 11 45 345 46 350 1.36e-16 82.0
Msa1038420 MtrunA17_Chr7g0253501 21.958 378 262 10 9 361 2 371 1.38e-16 82.0
Msa1038420 MtrunA17_Chr3g0134111 26.238 404 262 15 61 446 62 447 3.24e-16 80.9
Msa1038420 MtrunA17_Chr3g0134101 24.938 401 251 12 61 446 83 448 4.66e-16 80.1
Msa1038420 MtrunA17_Chr3g0087401 24.781 343 220 11 31 348 23 352 1.54e-15 78.6
Msa1038420 MtrunA17_Chr3g0134041 25.915 328 224 11 38 352 40 361 2.13e-15 78.2
Msa1038420 MtrunA17_Chr3g0134061 25.210 357 224 13 51 372 55 403 1.14e-14 75.9
Msa1038420 MtrunA17_Chr7g0273721 23.978 367 236 12 43 391 45 386 1.89e-14 75.1
Msa1038420 MtrunA17_Chr3g0134121 24.578 415 251 12 61 446 66 447 2.07e-14 75.5
Msa1038420 MtrunA17_Chr6g0470591 24.739 287 190 10 64 333 71 348 4.37e-14 74.3
Msa1038420 MtrunA17_Chr2g0311401 22.259 301 208 6 149 436 5 292 5.55e-14 72.4
Msa1038420 MtrunA17_Chr5g0408911 21.250 320 230 7 44 354 55 361 5.95e-14 73.6
Msa1038420 MtrunA17_Chr8g0376891 24.852 338 207 12 8 324 2 313 1.06e-13 72.8
Msa1038420 MtrunA17_Chr5g0438681 23.620 326 220 10 8 324 2 307 2.21e-13 72.0
Msa1038420 MtrunA17_Chr4g0010351 28.000 325 184 14 60 352 51 357 8.39e-13 69.7
Msa1038420 MtrunA17_Chr5g0399681 28.365 208 127 7 45 239 49 247 8.68e-13 69.7
Msa1038420 MtrunA17_Chr7g0273781 22.500 320 228 10 37 345 72 382 1.03e-12 70.1
Msa1038420 MtrunA17_Chr7g0273761 24.375 320 209 10 45 345 418 723 1.08e-12 70.5
Msa1038420 MtrunA17_Chr3g0087221 26.140 329 206 15 45 348 41 357 2.55e-12 68.6
Msa1038420 MtrunA17_Chr5g0438701 23.333 330 219 10 8 324 2 310 2.74e-12 68.6
Msa1038420 MtrunA17_Chr7g0273791 21.795 312 225 9 45 345 46 349 5.30e-12 67.8
Msa1038420 MtrunA17_Chr4g0010381 24.841 314 198 11 60 348 51 351 8.63e-12 67.0
Msa1038420 MtrunA17_Chr7g0253541 21.750 400 261 9 64 429 60 441 1.82e-11 65.9
Msa1038420 MtrunA17_Chr3g0106691 24.375 320 193 13 64 355 114 412 5.05e-11 64.7
Msa1038420 MtrunA17_Chr4g0010331 25.872 344 226 13 22 348 15 346 6.12e-11 64.3
Msa1038420 MtrunA17_Chr4g0010361 26.045 311 199 12 60 348 51 352 8.73e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038420 AT4G29250.1 29.892 465 285 15 8 454 13 454 2.29e-57 196
Msa1038420 AT4G24510.1 26.773 437 270 20 16 439 13 412 5.16e-28 115
Msa1038420 AT5G41040.2 27.566 341 211 11 31 351 38 362 2.02e-24 105
Msa1038420 AT5G41040.1 27.566 341 211 11 31 351 54 378 2.18e-24 105
Msa1038420 AT3G23840.1 25.301 415 249 16 16 417 19 385 4.56e-24 104
Msa1038420 AT3G48720.1 24.781 343 226 12 29 354 28 355 8.22e-21 94.7
Msa1038420 AT4G13840.1 23.129 441 277 16 16 439 21 416 3.95e-20 92.8
Msa1038420 AT5G63560.1 24.709 344 221 12 29 354 28 351 1.61e-19 90.9
Msa1038420 AT1G65450.1 24.011 379 252 9 5 360 14 379 7.47e-19 89.4
Msa1038420 AT5G07080.1 24.855 346 224 11 64 391 70 397 9.73e-19 89.0
Msa1038420 AT1G24420.2 28.338 367 236 15 97 454 88 436 1.80e-18 87.8
Msa1038420 AT1G24420.1 28.338 367 236 15 97 454 88 436 1.80e-18 87.8
Msa1038420 AT5G48930.1 23.171 410 282 12 40 436 34 423 1.69e-17 85.1
Msa1038420 AT5G02890.1 29.630 162 100 5 34 186 36 192 8.80e-17 82.0
Msa1038420 AT5G57840.1 22.881 354 247 8 21 358 12 355 5.95e-16 80.1
Msa1038420 AT1G24430.1 24.042 287 192 6 29 310 27 292 2.12e-14 75.5
Msa1038420 AT5G23940.1 23.044 473 304 21 8 446 2 448 6.66e-14 73.9
Msa1038420 AT1G78990.1 23.926 326 223 10 43 356 46 358 1.14e-13 73.2
Msa1038420 AT5G16410.1 23.306 369 249 13 2 354 29 379 8.93e-13 70.5
Msa1038420 AT1G27620.1 23.625 309 204 10 64 353 58 353 1.17e-12 70.1
Msa1038420 AT5G67150.1 24.367 316 189 11 64 348 61 357 2.89e-12 68.9
Msa1038420 AT1G32910.1 24.026 308 204 11 64 354 65 359 9.31e-12 67.4
Msa1038420 AT5G07870.1 24.057 424 267 14 54 448 62 459 2.16e-11 66.2

Find 148 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 7_1:-75230740 Msa1038420:CDS
TCACTCCCAACTGGATATTT+TGG 0.171448 7_1:-75230627 Msa1038420:CDS
CTGTTTGAGCCAACAATTAT+TGG 0.196140 7_1:-75230110 Msa1038420:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 7_1:-75232285 Msa1038420:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 7_1:+75230426 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 7_1:-75230453 Msa1038420:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 7_1:+75230967 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.294904 7_1:-75230564 Msa1038420:CDS
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 7_1:-75232386 Msa1038420:CDS
AGTTTGATTATGAATTTCTT+TGG 0.295727 7_1:+75230695 None:intergenic
TTAATAAGTGTAGGCTTGTT+TGG 0.300216 7_1:-75230050 Msa1038420:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 7_1:-75230034 Msa1038420:three_prime_UTR
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 7_1:+75230968 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 7_1:+75230948 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 7_1:-75230992 Msa1038420:CDS
TAAAGTACCTGAATTCTAAA+AGG 0.341780 7_1:+75232112 None:intergenic
GTTTGATTATGAATTTCTTT+GGG 0.355543 7_1:+75230696 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 7_1:-75232331 Msa1038420:CDS
AAATTAACGGGGACACAAAA+TGG 0.363890 7_1:+75232717 None:intergenic
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 7_1:+75230947 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 7_1:+75230759 None:intergenic
TTTACTAGAATGAAATTGTT+TGG 0.375244 7_1:-75229913 Msa1038420:three_prime_UTR
GGAACACCTAAATGCATGTA+TGG 0.381659 7_1:-75230432 Msa1038420:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 7_1:-75232292 Msa1038420:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 7_1:+75230921 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 7_1:-75232284 Msa1038420:CDS
CCCAACCGGCCCGTTATTGT+CGG 0.402575 7_1:+75232322 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 7_1:-75232494 Msa1038420:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 7_1:-75231053 Msa1038420:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 7_1:+75230168 None:intergenic
TTCCGATGGGAGACTTAAAT+AGG 0.422742 7_1:-75229853 Msa1038420:three_prime_UTR
GTCGATATACCCGACAATAA+CGG 0.423205 7_1:-75232332 Msa1038420:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 7_1:-75232493 Msa1038420:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 7_1:+75230895 None:intergenic
GAGCCAAAGATTATCCTTGC+TGG 0.432338 7_1:-75230171 Msa1038420:CDS
TGGCTATCATCTTCTGCTAC+TGG 0.433577 7_1:-75232196 Msa1038420:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 7_1:-75230527 Msa1038420:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 7_1:+75230958 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 7_1:-75232276 Msa1038420:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 7_1:+75232465 None:intergenic
ATAAAACCATCACTCCCAAC+TGG 0.443926 7_1:-75230636 Msa1038420:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 7_1:-75232245 Msa1038420:CDS
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 7_1:+75232308 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 7_1:-75230078 Msa1038420:three_prime_UTR
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 7_1:+75230955 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 7_1:-75232322 Msa1038420:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 7_1:-75230491 Msa1038420:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 7_1:+75230748 None:intergenic
ACGCTTACACTGATTATAAT+CGG 0.458377 7_1:+75229960 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 7_1:+75230101 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.467424 7_1:-75232167 Msa1038420:CDS
ACTATTTCAGAGGAAATTAA+CGG 0.471112 7_1:+75232704 None:intergenic
TTGAGCCAACAATTATTGGC+AGG 0.473229 7_1:-75230106 Msa1038420:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 7_1:+75230890 None:intergenic
TTTAAGTCTCCCATCGGAAA+CGG 0.481097 7_1:+75229857 None:intergenic
TCAGACAATGATTCCCTCAA+TGG 0.481558 7_1:+75232361 None:intergenic
CTAAAAGGTGACCATGTGCT+AGG 0.487865 7_1:+75232127 None:intergenic
CGTTTCCAAAATATCCAGTT+GGG 0.487866 7_1:+75230622 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 7_1:+75230936 None:intergenic
CTATTTCAGAGGAAATTAAC+GGG 0.490404 7_1:+75232705 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 7_1:-75232374 Msa1038420:CDS
GGTCTACACCCGTCAACTTG+TGG 0.496901 7_1:+75232464 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 7_1:+75232299 None:intergenic
CACTTATTAATTCATCCAAA+CGG 0.501081 7_1:+75230063 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 7_1:-75232168 Msa1038420:CDS
AAATATCCAGTTGGGAGTGA+TGG 0.503498 7_1:+75230630 None:intergenic
TTAATTCACACACACTTGAA+AGG 0.506149 7_1:-75230528 Msa1038420:CDS
CATTTGAATTGGATCCATTG+AGG 0.507624 7_1:-75232375 Msa1038420:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 7_1:+75230949 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 7_1:-75232311 Msa1038420:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 7_1:+75232323 None:intergenic
GTGTATGATAACTCATACCA+TGG 0.520501 7_1:+75232443 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 7_1:+75230900 None:intergenic
GATTATCCTTGCTGGCTGTA+GGG 0.526008 7_1:-75230163 Msa1038420:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 7_1:-75230023 Msa1038420:three_prime_UTR
CGAACTATTTATAACAAACA+TGG 0.526568 7_1:+75232678 None:intergenic
GTATTGATTGGAGTGAAGAA+AGG 0.526703 7_1:+75230933 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 7_1:-75230475 Msa1038420:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 7_1:-75232323 Msa1038420:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 7_1:-75232308 Msa1038420:CDS
AGATTATCCTTGCTGGCTGT+AGG 0.533649 7_1:-75230164 Msa1038420:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 7_1:+75230937 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 7_1:-75230276 Msa1038420:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 7_1:+75230267 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 7_1:+75230747 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 7_1:-75232472 Msa1038420:CDS
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 7_1:-75230325 Msa1038420:CDS
TGGGTCTTACCCGAACTCAC+TGG 0.545145 7_1:+75232484 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.545632 7_1:+75230824 None:intergenic
TATGTTTGATGAAGAGGTAA+TGG 0.545889 7_1:+75230854 None:intergenic
GTGGGGAATGTGGACGGTGA+AGG 0.546274 7_1:-75230306 Msa1038420:CDS
AAAACTGAAGAAATGGAGAA+TGG 0.546358 7_1:-75230573 Msa1038420:CDS
CAGATAAATAGCTTCAAAGA+AGG 0.547152 7_1:-75231068 Msa1038420:CDS
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 7_1:-75230324 Msa1038420:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 7_1:+75230908 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 7_1:-75232545 Msa1038420:CDS
TGAGAATTTGAAAGTGGCTG+TGG 0.559985 7_1:+75230830 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 7_1:+75230941 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 7_1:-75230272 Msa1038420:CDS
TTGGATGAATTAATAAGTGT+AGG 0.567829 7_1:-75230059 Msa1038420:three_prime_UTR
GAAGTTAGGTGTAATGATGC+TGG 0.568774 7_1:-75232262 Msa1038420:CDS
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 7_1:-75230323 Msa1038420:CDS
GGAAGAATTAGTTATTGGCA+TGG 0.577018 7_1:-75230029 Msa1038420:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 7_1:-75232521 Msa1038420:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 7_1:-75232473 Msa1038420:CDS
GTGATGCCTTCTTCAGATGG+AGG 0.582800 7_1:-75230273 Msa1038420:CDS
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 7_1:-75232301 Msa1038420:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 7_1:-75230431 Msa1038420:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 7_1:-75230462 Msa1038420:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 7_1:+75232128 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 7_1:-75232236 Msa1038420:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.592888 7_1:-75229843 Msa1038420:three_prime_UTR
AGATCAGTGTAAGGTAACAC+TGG 0.594403 7_1:-75232536 Msa1038420:CDS
TGTGGCTATGTTTGATGAAG+AGG 0.596735 7_1:+75230848 None:intergenic
GACCATGTGCTAGGGTCATG+AGG 0.598936 7_1:+75232136 None:intergenic
GCGTTTCCAAAATATCCAGT+TGG 0.599293 7_1:+75230621 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 7_1:-75232298 Msa1038420:CDS
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 7_1:-75230316 Msa1038420:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 7_1:-75231065 Msa1038420:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 7_1:-75232216 Msa1038420:CDS
GACCTATTTAAGTCTCCCAT+CGG 0.616847 7_1:+75229851 None:intergenic
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 7_1:-75232305 Msa1038420:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 7_1:-75232185 Msa1038420:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 7_1:-75230461 Msa1038420:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 7_1:-75230526 Msa1038420:CDS
GATGAAGAGGTAATGGTCTG+CGG 0.624301 7_1:+75230861 None:intergenic
TGTCGAGTGGGGAATGTGGA+CGG 0.625379 7_1:-75230312 Msa1038420:CDS
TATAATCAGTGTAAGCGTGT+GGG 0.629877 7_1:-75229955 Msa1038420:three_prime_UTR
GCTCTAATATCACCTACCGT+AGG 0.630800 7_1:+75229827 None:intergenic
TGAGCCAACAATTATTGGCA+GGG 0.632053 7_1:-75230105 Msa1038420:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 7_1:-75229839 Msa1038420:three_prime_UTR
TTATAATCAGTGTAAGCGTG+TGG 0.637530 7_1:-75229956 Msa1038420:three_prime_UTR
AACATGGAGTACTATTTCAG+AGG 0.639440 7_1:+75232694 None:intergenic
ATGTTGAACGAGGAAGAACT+TGG 0.641486 7_1:-75230228 Msa1038420:CDS
TAACGGGGACACAAAATGGA+GGG 0.642725 7_1:+75232721 None:intergenic
TTCGCAATATTAATGAAGCT+AGG 0.644020 7_1:-75232659 Msa1038420:five_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 7_1:-75232138 Msa1038420:CDS
ACTCGACAAGAAACATGAGC+TGG 0.648220 7_1:+75230327 None:intergenic
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 7_1:+75230752 None:intergenic
TGAGTCACAAAAGGAAACTG+AGG 0.655458 7_1:-75230466 Msa1038420:CDS
AACGGGGACACAAAATGGAG+GGG 0.665746 7_1:+75232722 None:intergenic
TTAACGGGGACACAAAATGG+AGG 0.666969 7_1:+75232720 None:intergenic
TATACCCGACAATAACGGGC+CGG 0.671866 7_1:-75232327 Msa1038420:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 7_1:-75232460 Msa1038420:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 7_1:+75230749 None:intergenic
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 7_1:+75230736 None:intergenic
TGTGATAGTAATGTTGAACG+AGG 0.726948 7_1:-75230238 Msa1038420:CDS
TATTTCAGAGGAAATTAACG+GGG 0.745503 7_1:+75232706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATCTTGTAATTTAAA+CGG + chr7_1:75230756-75230775 None:intergenic 10.0%
!! ATTACAAAAATGAAGAAAAA+TGG - chr7_1:75230167-75230186 Msa1038420:CDS 15.0%
!!! AGCAAAATAATATATTTTCA+TGG - chr7_1:75231138-75231157 Msa1038420:intron 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG - chr7_1:75232690-75232709 Msa1038420:five_prime_UTR 15.0%
!! AAAATGAAGAAAAATGGTTT+AGG - chr7_1:75230173-75230192 Msa1038420:CDS 20.0%
!! ATGATTGATACTTAAAATTG+TGG + chr7_1:75230608-75230627 None:intergenic 20.0%
!!! AATAGATTTTTTTCCTACTT+TGG + chr7_1:75230655-75230674 None:intergenic 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG + chr7_1:75231060-75231079 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG + chr7_1:75231222-75231241 None:intergenic 20.0%
!! GTATAGATAAATTGAATTAG+TGG - chr7_1:75231425-75231444 Msa1038420:intron 20.0%
!!! ACATTTTTTGTTTTGGATTT+TGG + chr7_1:75231793-75231812 None:intergenic 20.0%
!! GTTTGATTATGAATTTCTTT+GGG + chr7_1:75231879-75231898 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG + chr7_1:75231880-75231899 None:intergenic 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG - chr7_1:75232081-75232100 Msa1038420:intron 20.0%
!! TTTACTAGAATGAAATTGTT+TGG - chr7_1:75232659-75232678 Msa1038420:five_prime_UTR 20.0%
! ACTATTTCAGAGGAAATTAA+CGG + chr7_1:75229871-75229890 None:intergenic 25.0%
! CGAACTATTTATAACAAACA+TGG + chr7_1:75229897-75229916 None:intergenic 25.0%
!! TAAAGTACCTGAATTCTAAA+AGG + chr7_1:75230463-75230482 None:intergenic 25.0%
!!! ATTTTTTTCCTACTTTGGTT+AGG + chr7_1:75230650-75230669 None:intergenic 25.0%
! GAAAATGGAGAAAAATTCAT+GGG - chr7_1:75230822-75230841 Msa1038420:CDS 25.0%
! AAAAATAACGTGAAAGATCT+AGG + chr7_1:75230875-75230894 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG - chr7_1:75230893-75230912 Msa1038420:CDS 25.0%
! CATTTAGATTAAGAGAAAGA+TGG + chr7_1:75230938-75230957 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG - chr7_1:75230936-75230955 Msa1038420:CDS 25.0%
!! TGAAGACTATAATCTAAAAC+TGG - chr7_1:75230992-75231011 Msa1038420:CDS 25.0%
! CAATAATGTAGATGTAAATC+AGG + chr7_1:75231312-75231331 None:intergenic 25.0%
! CTGATTTACATCTACATTAT+TGG - chr7_1:75231310-75231329 Msa1038420:intron 25.0%
! GATAAATTGAATTAGTGGTA+CGG - chr7_1:75231430-75231449 Msa1038420:intron 25.0%
! ATAAATTGAATTAGTGGTAC+GGG - chr7_1:75231431-75231450 Msa1038420:intron 25.0%
!! GAAGGTATGAAGTAATAAAT+TGG - chr7_1:75231469-75231488 Msa1038420:intron 25.0%
! GTATGAAGTAATAAATTGGT+GGG - chr7_1:75231473-75231492 Msa1038420:intron 25.0%
! TATGAAGTAATAAATTGGTG+GGG - chr7_1:75231474-75231493 Msa1038420:intron 25.0%
!!! CATTAGGACATTTTTTGTTT+TGG + chr7_1:75231800-75231819 None:intergenic 25.0%
! TTCACTAAAAACTGAAGAAA+TGG - chr7_1:75231992-75232011 Msa1038420:intron 25.0%
! CACTTATTAATTCATCCAAA+CGG + chr7_1:75232512-75232531 None:intergenic 25.0%
! TTGGATGAATTAATAAGTGT+AGG - chr7_1:75232513-75232532 Msa1038420:CDS 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG - chr7_1:75232538-75232557 Msa1038420:CDS 25.0%
TATTTCAGAGGAAATTAACG+GGG + chr7_1:75229869-75229888 None:intergenic 30.0%
CTATTTCAGAGGAAATTAAC+GGG + chr7_1:75229870-75229889 None:intergenic 30.0%
TTCGCAATATTAATGAAGCT+AGG - chr7_1:75229913-75229932 Msa1038420:three_prime_UTR 30.0%
AACACTGGATTCAAAACTAA+CGG - chr7_1:75230051-75230070 Msa1038420:three_prime_UTR 30.0%
ATGGTTTAGGTCATTTGAAT+TGG - chr7_1:75230186-75230205 Msa1038420:CDS 30.0%
ATTTGAATTGGATCCATTGA+GGG - chr7_1:75230198-75230217 Msa1038420:CDS 30.0%
TGGATAGTACTATTGATGAA+TGG - chr7_1:75230356-75230375 Msa1038420:CDS 30.0%
ATTAATTTCCAGCAGAATCA+AGG + chr7_1:75230506-75230525 None:intergenic 30.0%
!! TAACAGTATGAGCTATTTTG+TGG - chr7_1:75230538-75230557 Msa1038420:CDS 30.0%
AAATCACTTAAGGTTGTAGA+TGG - chr7_1:75230800-75230819 Msa1038420:CDS 30.0%
TTAAGGTTGTAGATGGAAAA+TGG - chr7_1:75230807-75230826 Msa1038420:CDS 30.0%
GGAAAATGGAGAAAAATTCA+TGG - chr7_1:75230821-75230840 Msa1038420:CDS 30.0%
! AATTGATAGTATACACGAGA+GGG + chr7_1:75231084-75231103 None:intergenic 30.0%
! AAATTGATAGTATACACGAG+AGG + chr7_1:75231085-75231104 None:intergenic 30.0%
AAATATACACCTCAAATGGA+GGG + chr7_1:75231218-75231237 None:intergenic 30.0%
AAAATATACACCTCAAATGG+AGG + chr7_1:75231219-75231238 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG + chr7_1:75231274-75231293 None:intergenic 30.0%
ATGATGAAGTCTCTAATGAA+AGG + chr7_1:75231275-75231294 None:intergenic 30.0%
CATTAGAGACTTCATCATAT+TGG - chr7_1:75231277-75231296 Msa1038420:intron 30.0%
GGTATGAAGTAATAAATTGG+TGG - chr7_1:75231472-75231491 Msa1038420:intron 30.0%
CAGATAAATAGCTTCAAAGA+AGG - chr7_1:75231504-75231523 Msa1038420:intron 30.0%
ATAAATAGCTTCAAAGAAGG+TGG - chr7_1:75231507-75231526 Msa1038420:intron 30.0%
CATCATCATTCTTCAAATCA+TGG - chr7_1:75231580-75231599 Msa1038420:intron 30.0%
! AATTTGGAATGTTGTTGGTT+AGG + chr7_1:75231680-75231699 None:intergenic 30.0%
TATGTTTGATGAAGAGGTAA+TGG + chr7_1:75231721-75231740 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG + chr7_1:75231751-75231770 None:intergenic 30.0%
!!! TTTGTTTTGGATTTTGGAGA+GGG + chr7_1:75231787-75231806 None:intergenic 30.0%
!!! TTTTGTTTTGGATTTTGGAG+AGG + chr7_1:75231788-75231807 None:intergenic 30.0%
AAAACTGAAGAAATGGAGAA+TGG - chr7_1:75231999-75232018 Msa1038420:intron 30.0%
TTAATTCACACACACTTGAA+AGG - chr7_1:75232044-75232063 Msa1038420:intron 30.0%
TAATTCACACACACTTGAAA+GGG - chr7_1:75232045-75232064 Msa1038420:intron 30.0%
! TTAATAAGTGTAGGCTTGTT+TGG - chr7_1:75232522-75232541 Msa1038420:CDS 30.0%
! ACGCTTACACTGATTATAAT+CGG + chr7_1:75232615-75232634 None:intergenic 30.0%
AAATTAACGGGGACACAAAA+TGG + chr7_1:75229858-75229877 None:intergenic 35.0%
! AACATGGAGTACTATTTCAG+AGG + chr7_1:75229881-75229900 None:intergenic 35.0%
GTGTATGATAACTCATACCA+TGG + chr7_1:75230132-75230151 None:intergenic 35.0%
CATTTGAATTGGATCCATTG+AGG - chr7_1:75230197-75230216 Msa1038420:CDS 35.0%
TAGAGTCATAAAGGCTAATG+TGG - chr7_1:75230336-75230355 Msa1038420:CDS 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG - chr7_1:75230453-75230472 Msa1038420:CDS 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG - chr7_1:75230639-75230658 Msa1038420:CDS 35.0%
CAACATGCATATCCCAAAAA+GGG - chr7_1:75230686-75230705 Msa1038420:CDS 35.0%
TAGGAGAGACAAATCACTTA+AGG - chr7_1:75230790-75230809 Msa1038420:CDS 35.0%
GATGAAGTCTCTAATGAAAG+GGG + chr7_1:75231273-75231292 None:intergenic 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG - chr7_1:75231451-75231470 Msa1038420:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG + chr7_1:75231642-75231661 None:intergenic 35.0%
! GGATGAATTTGGAATGTTGT+TGG + chr7_1:75231685-75231704 None:intergenic 35.0%
CGTTTCCAAAATATCCAGTT+GGG + chr7_1:75231953-75231972 None:intergenic 35.0%
GAAATGGAGAATGGTGAATT+AGG - chr7_1:75232008-75232027 Msa1038420:intron 35.0%
AATTCACACACACTTGAAAG+GGG - chr7_1:75232046-75232065 Msa1038420:intron 35.0%
AGAATGGTTTGAGTCACAAA+AGG - chr7_1:75232097-75232116 Msa1038420:intron 35.0%
GAACACCTAAATGCATGTAT+GGG - chr7_1:75232141-75232160 Msa1038420:CDS 35.0%
TCTTTCCCATACATGCATTT+AGG + chr7_1:75232149-75232168 None:intergenic 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG - chr7_1:75232166-75232185 Msa1038420:CDS 35.0%
TGTGATAGTAATGTTGAACG+AGG - chr7_1:75232334-75232353 Msa1038420:CDS 35.0%
CTGTTTGAGCCAACAATTAT+TGG - chr7_1:75232462-75232481 Msa1038420:CDS 35.0%
TGTTGTAGCTAAATTCCGTT+TGG - chr7_1:75232494-75232513 Msa1038420:CDS 35.0%
GGAAGAATTAGTTATTGGCA+TGG - chr7_1:75232543-75232562 Msa1038420:CDS 35.0%
TTATAATCAGTGTAAGCGTG+TGG - chr7_1:75232616-75232635 Msa1038420:five_prime_UTR 35.0%
TATAATCAGTGTAAGCGTGT+GGG - chr7_1:75232617-75232636 Msa1038420:five_prime_UTR 35.0%
AGACTTAAATAGGTCTCCTA+CGG - chr7_1:75232729-75232748 Msa1038420:five_prime_UTR 35.0%
AGATCAGTGTAAGGTAACAC+TGG - chr7_1:75230036-75230055 Msa1038420:three_prime_UTR 40.0%
TCAGACAATGATTCCCTCAA+TGG + chr7_1:75230214-75230233 None:intergenic 40.0%
GTCGATATACCCGACAATAA+CGG - chr7_1:75230240-75230259 Msa1038420:CDS 40.0%
TCGATATACCCGACAATAAC+GGG - chr7_1:75230241-75230260 Msa1038420:CDS 40.0%
! GTACTGGTAATTGGGAAGTT+AGG - chr7_1:75230296-75230315 Msa1038420:CDS 40.0%
GAAGTTAGGTGTAATGATGC+TGG - chr7_1:75230310-75230329 Msa1038420:CDS 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG - chr7_1:75230327-75230346 Msa1038420:CDS 40.0%
TAAAAGGTGACCATGTGCTA+GGG + chr7_1:75230447-75230466 None:intergenic 40.0%
ACATAACACCTTGATTCTGC+TGG - chr7_1:75230495-75230514 Msa1038420:CDS 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG + chr7_1:75230688-75230707 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG - chr7_1:75230685-75230704 Msa1038420:CDS 40.0%
TGCATATCCCAAAAAGGGAT+TGG - chr7_1:75230691-75230710 Msa1038420:CDS 40.0%
! AGAGGATCCAATCCCTTTTT+GGG + chr7_1:75230701-75230720 None:intergenic 40.0%
! AAGAGGATCCAATCCCTTTT+TGG + chr7_1:75230702-75230721 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG + chr7_1:75231075-75231094 None:intergenic 40.0%
AATTAGTGGTACGGGTGATT+TGG - chr7_1:75231439-75231458 Msa1038420:intron 40.0%
AAAGAAGGTGGTGTAGCAAT+AGG - chr7_1:75231519-75231538 Msa1038420:intron 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG + chr7_1:75231627-75231646 None:intergenic 40.0%
TGATTGGAGTGAAGAAAGGT+GGG + chr7_1:75231638-75231657 None:intergenic 40.0%
TTGATTGGAGTGAAGAAAGG+TGG + chr7_1:75231639-75231658 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG + chr7_1:75231654-75231673 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG + chr7_1:75231675-75231694 None:intergenic 40.0%
!!! TGCGGTTTTAGGGATGAATT+TGG + chr7_1:75231696-75231715 None:intergenic 40.0%
TGTGGCTATGTTTGATGAAG+AGG + chr7_1:75231727-75231746 None:intergenic 40.0%
TGAGAATTTGAAAGTGGCTG+TGG + chr7_1:75231745-75231764 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG - chr7_1:75231832-75231851 Msa1038420:intron 40.0%
ATAAAACCATCACTCCCAAC+TGG - chr7_1:75231936-75231955 Msa1038420:intron 40.0%
AAATATCCAGTTGGGAGTGA+TGG + chr7_1:75231945-75231964 None:intergenic 40.0%
! TCACTCCCAACTGGATATTT+TGG - chr7_1:75231945-75231964 Msa1038420:intron 40.0%
GCGTTTCCAAAATATCCAGT+TGG + chr7_1:75231954-75231973 None:intergenic 40.0%
TGAGTCACAAAAGGAAACTG+AGG - chr7_1:75232106-75232125 Msa1038420:intron 40.0%
TCACAAAAGGAAACTGAGGA+AGG - chr7_1:75232110-75232129 Msa1038420:intron 40.0%
CACAAAAGGAAACTGAGGAA+GGG - chr7_1:75232111-75232130 Msa1038420:intron 40.0%
GAAACTGAGGAAGGGAAATT+TGG - chr7_1:75232119-75232138 Msa1038420:intron 40.0%
GGAACACCTAAATGCATGTA+TGG - chr7_1:75232140-75232159 Msa1038420:CDS 40.0%
! AACTTTTGTCTGCATGGAAG+AGG - chr7_1:75232172-75232191 Msa1038420:CDS 40.0%
ATAGTGATGCCTTCTTCAGA+TGG - chr7_1:75232296-75232315 Msa1038420:CDS 40.0%
ATGTTGAACGAGGAAGAACT+TGG - chr7_1:75232344-75232363 Msa1038420:CDS 40.0%
TTGAGCCAACAATTATTGGC+AGG - chr7_1:75232466-75232485 Msa1038420:CDS 40.0%
TGAGCCAACAATTATTGGCA+GGG - chr7_1:75232467-75232486 Msa1038420:CDS 40.0%
ACTACCCTGCCAATAATTGT+TGG + chr7_1:75232474-75232493 None:intergenic 40.0%
ATTAGTTATTGGCATGGCAG+TGG - chr7_1:75232549-75232568 Msa1038420:CDS 40.0%
TTTAAGTCTCCCATCGGAAA+CGG + chr7_1:75232718-75232737 None:intergenic 40.0%
TTCCGATGGGAGACTTAAAT+AGG - chr7_1:75232719-75232738 Msa1038420:five_prime_UTR 40.0%
GACCTATTTAAGTCTCCCAT+CGG + chr7_1:75232724-75232743 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG - chr7_1:75232733-75232752 Msa1038420:five_prime_UTR 40.0%
TAACGGGGACACAAAATGGA+GGG + chr7_1:75229854-75229873 None:intergenic 45.0%
TTAACGGGGACACAAAATGG+AGG + chr7_1:75229855-75229874 None:intergenic 45.0%
GTCAGAGACAGATCAGTGTA+AGG - chr7_1:75230027-75230046 Msa1038420:three_prime_UTR 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG - chr7_1:75230287-75230306 Msa1038420:CDS 45.0%
!! GGATGGTGGTACTGGTAATT+GGG - chr7_1:75230288-75230307 Msa1038420:CDS 45.0%
TGGCTATCATCTTCTGCTAC+TGG - chr7_1:75230376-75230395 Msa1038420:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG - chr7_1:75230387-75230406 Msa1038420:CDS 45.0%
ATGAGGCACAGCTTATTGCT+TGG - chr7_1:75230404-75230423 Msa1038420:CDS 45.0%
TGAGGCACAGCTTATTGCTT+GGG - chr7_1:75230405-75230424 Msa1038420:CDS 45.0%
CTAAAAGGTGACCATGTGCT+AGG + chr7_1:75230448-75230467 None:intergenic 45.0%
ATTGGATCCTCTTCCGTGAA+TGG - chr7_1:75230709-75230728 Msa1038420:CDS 45.0%
TCACTAGACCTCTCCATTCA+CGG + chr7_1:75230725-75230744 None:intergenic 45.0%
TTCCAAGTTCCCTCCATTTG+AGG - chr7_1:75231206-75231225 Msa1038420:intron 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG + chr7_1:75231626-75231645 None:intergenic 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG + chr7_1:75231628-75231647 None:intergenic 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG + chr7_1:75231667-75231686 None:intergenic 45.0%
!! GGTAATGGTCTGCGGTTTTA+GGG + chr7_1:75231706-75231725 None:intergenic 45.0%
!! AGGTAATGGTCTGCGGTTTT+AGG + chr7_1:75231707-75231726 None:intergenic 45.0%
! GATGAAGAGGTAATGGTCTG+CGG + chr7_1:75231714-75231733 None:intergenic 45.0%
AAGTCAAATGGGGTGGCATT+AGG + chr7_1:75231816-75231835 None:intergenic 45.0%
AGCTGAGAGGAAGTCAAATG+GGG + chr7_1:75231826-75231845 None:intergenic 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG + chr7_1:75231827-75231846 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG + chr7_1:75231828-75231847 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG + chr7_1:75231839-75231858 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG + chr7_1:75232248-75232267 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG - chr7_1:75232247-75232266 Msa1038420:CDS 45.0%
GCTCATGTTTCTTGTCGAGT+GGG - chr7_1:75232248-75232267 Msa1038420:CDS 45.0%
CTCATGTTTCTTGTCGAGTG+GGG - chr7_1:75232249-75232268 Msa1038420:CDS 45.0%
TGATGCCTTCTTCAGATGGA+GGG - chr7_1:75232300-75232319 Msa1038420:CDS 45.0%
GAGCCAAAGATTATCCTTGC+TGG - chr7_1:75232401-75232420 Msa1038420:CDS 45.0%
CAGCCAGCAAGGATAATCTT+TGG + chr7_1:75232407-75232426 None:intergenic 45.0%
! AGATTATCCTTGCTGGCTGT+AGG - chr7_1:75232408-75232427 Msa1038420:CDS 45.0%
! GATTATCCTTGCTGGCTGTA+GGG - chr7_1:75232409-75232428 Msa1038420:CDS 45.0%
!! TTAATATTAATATTAAAACT+AGG - chr7_1:75230771-75230790 Msa1038420:CDS 5.0%
AACGGGGACACAAAATGGAG+GGG + chr7_1:75229853-75229872 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG - chr7_1:75230078-75230097 Msa1038420:three_prime_UTR 50.0%
TCAAGCAGACCAGTGAGTTC+GGG - chr7_1:75230079-75230098 Msa1038420:three_prime_UTR 50.0%
! GGGTAAGACCCACAAGTTGA+CGG - chr7_1:75230099-75230118 Msa1038420:three_prime_UTR 50.0%
! GGTAAGACCCACAAGTTGAC+GGG - chr7_1:75230100-75230119 Msa1038420:three_prime_UTR 50.0%
GTCTACACCCGTCAACTTGT+GGG + chr7_1:75230110-75230129 None:intergenic 50.0%
! AAGTTGACGGGTGTAGACCA+TGG - chr7_1:75230112-75230131 Msa1038420:three_prime_UTR 50.0%
!! TATACCCGACAATAACGGGC+CGG - chr7_1:75230245-75230264 Msa1038420:CDS 50.0%
ATCCTCTTCCGTGAATGGAG+AGG - chr7_1:75230714-75230733 Msa1038420:CDS 50.0%
GCACGAGATTAGATCCTCTC+AGG + chr7_1:75230910-75230929 None:intergenic 50.0%
CACCTCAAATGGAGGGAACT+TGG + chr7_1:75231211-75231230 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG + chr7_1:75231634-75231653 None:intergenic 50.0%
TGAGAGGAAGTCAAATGGGG+TGG + chr7_1:75231823-75231842 None:intergenic 50.0%
TTCTTGTCGAGTGGGGAATG+TGG - chr7_1:75232256-75232275 Msa1038420:CDS 50.0%
GTGATGCCTTCTTCAGATGG+AGG - chr7_1:75232299-75232318 Msa1038420:CDS 50.0%
GCAAACCCTCCATCTGAAGA+AGG + chr7_1:75232308-75232327 None:intergenic 50.0%
! GTTTTACCCTACAGCCAGCA+AGG + chr7_1:75232418-75232437 None:intergenic 50.0%
!!! ATTTTTGGCGCCGTTTCCGA+TGG - chr7_1:75232705-75232724 Msa1038420:five_prime_UTR 50.0%
!! TTTTTGGCGCCGTTTCCGAT+GGG - chr7_1:75232706-75232725 Msa1038420:five_prime_UTR 50.0%
TGGGTCTTACCCGAACTCAC+TGG + chr7_1:75230091-75230110 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG + chr7_1:75230111-75230130 None:intergenic 55.0%
CACCATCCTCCTCCTTCTCT+CGG + chr7_1:75230276-75230295 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG - chr7_1:75230280-75230299 Msa1038420:CDS 55.0%
TGCCTCATGACCCTAGCACA+TGG - chr7_1:75230434-75230453 Msa1038420:CDS 55.0%
GACCATGTGCTAGGGTCATG+AGG + chr7_1:75230439-75230458 None:intergenic 55.0%
GACCTCTCCATTCACGGAAG+AGG + chr7_1:75230719-75230738 None:intergenic 55.0%
TGTCGAGTGGGGAATGTGGA+CGG - chr7_1:75232260-75232279 Msa1038420:CDS 55.0%
CCAACCGGCCCGTTATTGTC+GGG + chr7_1:75230252-75230271 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG + chr7_1:75230253-75230272 None:intergenic 60.0%
!! CCGACAATAACGGGCCGGTT+GGG - chr7_1:75230250-75230269 Msa1038420:CDS 60.0%
CGAGAGAAGGAGGAGGATGG+TGG - chr7_1:75230274-75230293 Msa1038420:CDS 60.0%
GGTTGGAAATGGGGCTGTGG+CGG + chr7_1:75231617-75231636 None:intergenic 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG + chr7_1:75231620-75231639 None:intergenic 60.0%
GTGGGGAATGTGGACGGTGA+AGG - chr7_1:75232266-75232285 Msa1038420:CDS 60.0%
!! CCCGACAATAACGGGCCGGT+TGG - chr7_1:75230249-75230268 Msa1038420:CDS 65.0%
CCTCCTTCTCTCGGCCCAAC+CGG + chr7_1:75230267-75230286 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG - chr7_1:75230267-75230286 Msa1038420:CDS 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG - chr7_1:75230271-75230290 Msa1038420:CDS 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG + chr7_1:75231607-75231626 None:intergenic 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG + chr7_1:75231608-75231627 None:intergenic 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG - chr7_1:75230264-75230283 Msa1038420:CDS 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG - chr7_1:75230261-75230280 Msa1038420:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75229830 75232764 75229830 ID=Msa1038420;Name=Msa1038420
chr7_1 mRNA 75229830 75232764 75229830 ID=Msa1038420-mRNA-1;Parent=Msa1038420;Name=Msa1038420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195|1|1|1|1|1|2|322|461
chr7_1 exon 75229830 75231087 75229830 ID=Msa1038420-mRNA-1:exon:19198;Parent=Msa1038420-mRNA-1
chr7_1 exon 75232120 75232764 75232120 ID=Msa1038420-mRNA-1:exon:19197;Parent=Msa1038420-mRNA-1
chr7_1 five_prime_UTR 75232570 75232764 75232570 ID=Msa1038420-mRNA-1:five_prime_utr;Parent=Msa1038420-mRNA-1
chr7_1 CDS 75232120 75232569 75232120 ID=Msa1038420-mRNA-1:cds;Parent=Msa1038420-mRNA-1
chr7_1 CDS 75230152 75231087 75230152 ID=Msa1038420-mRNA-1:cds;Parent=Msa1038420-mRNA-1
chr7_1 three_prime_UTR 75229830 75230151 75229830 ID=Msa1038420-mRNA-1:three_prime_utr;Parent=Msa1038420-mRNA-1
Gene Sequence

>Msa1038420

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATACTATTACAAAAATGAAGAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATAATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCGCAGACCATTACCTCTTCATCAAACATAGCCACAGCCACTTTCAAATTCTCAAGTTCAATCATCAAACATTCCCTCTCCAAAATCCAAAACAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTACTCACTTGAAACCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTCCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAACTGAAGAAATGGAGAATGGTGAATTAGGAGACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGGTGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAACGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA
Protein sequence

>Msa1038420

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIYYYKNEEKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSATGSDEAQLIAWDNMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATATFKFSSSIIKHSLSKIQNKKCPNATPFDFLSALFWTRVTHLKPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKTEEMENGELGDVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDGEGLIIVMPSSDGGFARTVIVMLNEEELGKLCNDQEILKLEPKIILAGCRVKR*