AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655080 MtrunA17_Chr4g0052401 99.239 788 5 1 1 788 1 787 0.0 1605
Msa0655080 MtrunA17_Chr2g0297291 81.463 793 138 5 1 788 1 789 0.0 1305
Msa0655080 MtrunA17_Chr6g0461871 48.758 765 362 4 50 788 25 785 0.0 741
Msa0655080 MtrunA17_Chr2g0297311 80.899 445 85 0 1 445 1 445 0.0 708
Msa0655080 MtrunA17_Chr5g0430731 46.286 754 381 7 42 788 18 754 0.0 707
Msa0655080 MtrunA17_Chr6g0451081 45.362 787 393 10 28 788 1 776 0.0 696
Msa0655080 MtrunA17_Chr7g0268981 44.386 766 390 5 23 786 40 771 0.0 689
Msa0655080 MtrunA17_Chr3g0128831 46.375 800 384 12 28 788 1 794 0.0 688
Msa0655080 MtrunA17_Chr8g0365001 46.488 783 386 10 26 788 71 840 0.0 684
Msa0655080 MtrunA17_Chr4g0055471 45.761 802 396 12 12 788 28 815 0.0 674
Msa0655080 MtrunA17_Chr2g0279131 45.256 780 404 9 22 788 80 849 0.0 669
Msa0655080 MtrunA17_Chr5g0429991 44.887 753 393 8 52 788 103 849 0.0 640
Msa0655080 MtrunA17_Chr8g0387661 44.231 780 398 8 41 788 18 792 0.0 637
Msa0655080 MtrunA17_Chr8g0380281 42.677 792 420 9 18 788 4 782 0.0 627
Msa0655080 MtrunA17_Chr2g0297321 78.510 349 66 5 445 788 3 347 0.0 552
Msa0655080 MtrunA17_Chr8g0393241 38.053 791 438 14 40 785 13 796 1.19e-176 527
Msa0655080 MtrunA17_Chr8g0375411 36.412 758 403 10 34 786 13 696 5.73e-161 483
Msa0655080 MtrunA17_Chr8g0365031 39.965 573 278 5 218 786 39 549 4.08e-152 455
Msa0655080 MtrunA17_Chr8g0344561 40.572 594 315 8 199 788 13 572 1.09e-150 452
Msa0655080 MtrunA17_Chr5g0413721 51.810 442 199 6 28 457 1 440 3.56e-144 445
Msa0655080 MtrunA17_Chr5g0413721 39.286 364 194 5 444 788 516 871 9.88e-79 271
Msa0655080 MtrunA17_Chr5g0430571 40.941 574 278 11 219 788 19 535 2.76e-143 432
Msa0655080 MtrunA17_Chr8g0344591 44.170 446 218 6 199 640 13 431 4.38e-122 375
Msa0655080 MtrunA17_Chr8g0365041 51.777 197 93 1 22 216 35 231 2.30e-58 199
Msa0655080 MtrunA17_Chr5g0413751 49.432 176 89 0 445 620 133 308 1.44e-56 196
Msa0655080 MtrunA17_Chr5g0413751 45.652 92 45 1 109 195 47 138 4.12e-18 85.9
Msa0655080 MtrunA17_Chr8g0344581 54.000 150 66 1 50 199 4 150 9.01e-48 166
Msa0655080 MtrunA17_Chr5g0430551 52.597 154 70 1 49 199 10 163 1.17e-47 167
Msa0655080 MtrunA17_Chr8g0344551 54.000 150 66 1 50 199 4 150 1.26e-47 166
Msa0655080 MtrunA17_Chr1g0159401 44.538 119 59 2 197 315 12 123 3.79e-23 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655080 AT1G31120.1 76.090 803 170 7 1 788 1 796 0.0 1199
Msa0655080 AT2G35060.4 75.375 800 177 6 1 788 1 792 0.0 1195
Msa0655080 AT2G35060.1 75.375 800 177 6 1 788 1 792 0.0 1195
Msa0655080 AT2G35060.3 75.375 800 177 6 1 788 1 792 0.0 1195
Msa0655080 AT2G35060.2 75.281 801 177 7 1 788 1 793 0.0 1190
Msa0655080 AT4G19960.2 68.148 810 233 5 1 788 1 807 0.0 1063
Msa0655080 AT4G19960.1 66.828 826 233 6 1 788 1 823 0.0 1054
Msa0655080 AT4G19960.3 66.029 836 233 6 1 788 1 833 0.0 1050
Msa0655080 AT4G19960.4 67.402 589 175 3 214 788 1 586 0.0 780
Msa0655080 AT2G40540.1 47.296 795 384 9 28 788 1 794 0.0 703
Msa0655080 AT2G40540.5 47.296 795 384 9 28 788 1 794 0.0 703
Msa0655080 AT2G40540.4 47.296 795 384 9 28 788 1 794 0.0 703
Msa0655080 AT2G40540.2 47.296 795 384 9 28 788 1 794 0.0 703
Msa0655080 AT2G40540.3 47.296 795 384 9 28 788 1 794 0.0 703
Msa0655080 AT1G60160.1 44.678 808 418 9 2 788 28 827 0.0 699
Msa0655080 AT3G02050.1 47.155 791 385 6 27 788 3 789 0.0 698
Msa0655080 AT5G14880.1 47.804 774 372 10 42 788 13 781 0.0 691
Msa0655080 AT1G70300.1 45.420 786 400 8 28 788 1 782 0.0 683
Msa0655080 AT4G13420.1 44.571 792 415 7 4 786 7 783 0.0 679
Msa0655080 AT4G33530.1 45.365 809 407 10 4 788 58 855 0.0 670
Msa0655080 AT2G30070.1 51.320 606 292 1 42 644 18 623 0.0 657
Msa0655080 AT2G30070.1 38.961 77 47 0 712 788 636 712 1.09e-11 68.9
Msa0655080 AT5G09400.1 46.065 775 399 8 30 788 87 858 0.0 650
Msa0655080 AT4G23640.1 44.948 772 386 9 49 788 11 775 0.0 637
Msa0655080 AT4G33530.2 45.779 616 323 4 183 788 13 627 0.0 548
Msa0655080 AT2G30070.2 50.398 502 249 0 143 644 2 503 0.0 539
Msa0655080 AT2G30070.2 38.961 77 47 0 712 788 516 592 8.64e-12 68.9

Find 218 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCTTGGCGTCGTTTA+TGG 0.154578 4_3:-63501363 Msa0655080:CDS
ATCGGCTGTTGGTGGGATTA+AGG 0.255722 4_3:-63500060 Msa0655080:CDS
ACAAGGTATCTCTCTTCTTC+CGG 0.262164 4_3:+63497533 None:intergenic
GCTGGGGTGGTTCACATATT+AGG 0.271225 4_3:-63497134 Msa0655080:CDS
ATTCTTATTCTTGTCCTTGC+TGG 0.272064 4_3:-63500251 Msa0655080:CDS
ATTATATATATGCATTTCTT+AGG 0.280181 4_3:-63497055 Msa0655080:CDS
TGTCGCCTGGCTTGCAACTA+TGG 0.292518 4_3:+63498288 None:intergenic
CCTCGGTTTGGCCACTTACT+TGG 0.294599 4_3:+63497192 None:intergenic
TTGCTCCAATTGTCCTCCTT+TGG 0.298318 4_3:-63499802 Msa0655080:CDS
TGGCGTCGTTTATGGAGATT+TGG 0.304079 4_3:-63501355 Msa0655080:CDS
TCAGATGAATACAGTTTATA+TGG 0.316978 4_3:-63497353 Msa0655080:CDS
CTCCTTTGGTTTCTCCTAAT+AGG 0.317007 4_3:-63499788 Msa0655080:CDS
TTGCAGCAAATGACCTTTCA+TGG 0.321779 4_3:+63500318 None:intergenic
GAAAATTGCATAGCTGAAAA+TGG 0.322285 4_3:-63501817 Msa0655080:exon
CAAAGGTAGTATGTGGGATT+TGG 0.334401 4_3:-63501760 Msa0655080:CDS
GAAAATAATCTCAAACAAAA+AGG 0.335658 4_3:+63496773 None:intergenic
CTCGGGCTTGGCCCAAGTTT+AGG 0.337026 4_3:-63497704 Msa0655080:CDS
CAAGGTATCTCTCTTCTTCC+GGG 0.346404 4_3:+63497534 None:intergenic
CTTTGCATTGCTGTCACGGC+AGG 0.347095 4_3:-63498133 Msa0655080:CDS
TTGAATAACTGCAGGGATGC+TGG 0.348315 4_3:-63497152 Msa0655080:CDS
TACCATAAGCATTTCCAATC+TGG 0.350786 4_3:+63498095 None:intergenic
TGTCTGTGCCATAATGTTGC+AGG 0.356956 4_3:+63499840 None:intergenic
ATTCTTACCCCGGCTATATC+AGG 0.357397 4_3:-63500203 Msa0655080:intron
CGAAAGATGTGGTAATTCTT+AGG 0.358981 4_3:+63497497 None:intergenic
ATCAGAAAGAAGAAGTGATA+TGG 0.358989 4_3:+63502477 None:intergenic
ATATTTAACATCTGTAAGTA+TGG 0.359612 4_3:-63499755 Msa0655080:CDS
TATATAGTCCAGATATCAAT+TGG 0.360279 4_3:-63498168 Msa0655080:CDS
ATATACCAATACCTCCTATT+AGG 0.365604 4_3:+63499774 None:intergenic
AACCAGATTGGAAATGCTTA+TGG 0.368806 4_3:-63498097 Msa0655080:intron
ATTATGTTTGTCTGGCATTA+CGG 0.372759 4_3:-63497782 Msa0655080:CDS
TGATATCTGGACTATATATC+TGG 0.373074 4_3:+63498173 None:intergenic
GTCTCGATGGCATGGATTCT+CGG 0.378294 4_3:-63497722 Msa0655080:CDS
TCATCGGTGCGATGCTGATT+GGG 0.380293 4_3:+63500371 None:intergenic
TTCATCGGTGCGATGCTGAT+TGG 0.380303 4_3:+63500370 None:intergenic
ATAAGGACCCAATTGATATC+TGG 0.383547 4_3:+63498160 None:intergenic
GGAACATACCATTACTCATA+TGG 0.384347 4_3:+63500027 None:intergenic
TGGGTTCCTCTTGTAATTGC+CGG 0.384804 4_3:-63497818 Msa0655080:CDS
ATGGCATGGATTCTCGGGCT+TGG 0.385857 4_3:-63497716 Msa0655080:CDS
TGTGACGGAGAGTACAAAAC+TGG 0.391621 4_3:+63502403 None:intergenic
GGTATCATGCTCAGTATAAC+AGG 0.392216 4_3:-63499647 Msa0655080:intron
GGCGTCGTTTATGGAGATTT+GGG 0.402244 4_3:-63501354 Msa0655080:CDS
TTAGGACTTGTTCGTGTACC+TGG 0.405042 4_3:-63497686 Msa0655080:CDS
GATTATCTACTCTCTTACCT+TGG 0.406143 4_3:-63501250 Msa0655080:CDS
CAAGTTCATCGCCCTCGGTT+TGG 0.406422 4_3:+63497180 None:intergenic
TCTTCATCTTTCACACCGTT+CGG 0.408337 4_3:+63501297 None:intergenic
AATGAGTCAAGTTATTCATA+AGG 0.411947 4_3:+63498761 None:intergenic
ATTGCTGTTGTAATATTAGT+TGG 0.412164 4_3:-63499872 Msa0655080:CDS
GTGTAGACTAGTCCGATTCC+AGG 0.417435 4_3:+63497668 None:intergenic
AAATAGTGATATATGTAAAC+AGG 0.422030 4_3:+63499707 None:intergenic
TTTCTCCTAATAGGAGGTAT+TGG 0.422505 4_3:-63499779 Msa0655080:CDS
CATCAAATGATTTGTGATGA+AGG 0.427920 4_3:+63496941 None:intergenic
AGAAACCAAAGGAGGACAAT+TGG 0.429550 4_3:+63499797 None:intergenic
TAGTAGTAGAATTGAGTAAG+AGG 0.430671 4_3:-63501844 Msa0655080:five_prime_UTR
TCTTCCGGGACGGTGTAAAC+AGG 0.434145 4_3:+63497548 None:intergenic
ACTCTTCGTCTTTCTTGTGC+AGG 0.434280 4_3:+63497447 None:intergenic
TATATGCATGCAAGATGTAT+TGG 0.437951 4_3:+63496630 None:intergenic
GCTGGCACCTGCATGGTAAT+CGG 0.439778 4_3:-63500233 Msa0655080:CDS
TATACATCAAAGAAGTTTGC+CGG 0.442604 4_3:-63498196 Msa0655080:CDS
TCTCGATGGCATGGATTCTC+GGG 0.451131 4_3:-63497721 Msa0655080:CDS
TCTTAAAATCTTAAACTAAC+CGG 0.453993 4_3:-63496688 Msa0655080:three_prime_UTR
GTATATACAACTTTAACTCT+AGG 0.455200 4_3:+63498214 None:intergenic
CTTCCTGCCTCTTCCTCCAT+AGG 0.455502 4_3:+63501720 None:intergenic
GTGATAACAAAGGTAGTATG+TGG 0.456986 4_3:-63501767 Msa0655080:CDS
GGCAGCCATAGTTGCAAGCC+AGG 0.457567 4_3:-63498293 Msa0655080:CDS
CTAACAGTGATATTCACATT+TGG 0.460145 4_3:+63497224 None:intergenic
TTCGAAAATCAAAACCAGAT+TGG 0.460880 4_3:-63498109 Msa0655080:CDS
CAAATGTGAATATCACTGTT+AGG 0.464701 4_3:-63497223 Msa0655080:CDS
TATTGGTGTGGCGCTGCCAC+TGG 0.464822 4_3:-63497928 Msa0655080:CDS
ATATCATGATTAAAATCATA+AGG 0.466363 4_3:+63497948 None:intergenic
CTGCCTCTTCCTCCATAGGC+TGG 0.471158 4_3:+63501724 None:intergenic
CTATGCAAAGTTGAGGTTTG+AGG 0.474374 4_3:-63496909 Msa0655080:three_prime_UTR
TGACCAGCCTATGGAGGAAG+AGG 0.478610 4_3:-63501727 Msa0655080:CDS
GAACATACCATTACTCATAT+GGG 0.479647 4_3:+63500028 None:intergenic
TCAAAGTTAATCAAGGTGGA+TGG 0.480215 4_3:-63497838 Msa0655080:CDS
ATATGTTGTTAGTTCTTCAT+CGG 0.484009 4_3:+63500355 None:intergenic
GCTGTTGCAACAACAAATAC+TGG 0.484350 4_3:+63498316 None:intergenic
CTTGTTCGTGTACCTGGAAT+CGG 0.484864 4_3:-63497680 Msa0655080:CDS
AGATACCTTGTAAAGAGGAT+TGG 0.486463 4_3:-63497521 Msa0655080:CDS
TTTCGATGTGTGGCACGGTA+TGG 0.488737 4_3:-63497479 Msa0655080:CDS
CGGCTTGCATATCAGAGTCT+TGG 0.492350 4_3:-63501375 Msa0655080:CDS
CCCGTCTCCGATTACCATGC+AGG 0.492534 4_3:+63500226 None:intergenic
CATTTCTTAGGAAAATATGC+AGG 0.492742 4_3:-63497043 Msa0655080:CDS
TGTACAGCTTGCATTTACTC+TGG 0.493940 4_3:-63498830 Msa0655080:CDS
TGAATAACTGCAGGGATGCT+GGG 0.494966 4_3:-63497151 Msa0655080:CDS
ATATATGTAAACAGGAGAAA+AGG 0.499936 4_3:+63499715 None:intergenic
AAGAGAGATACCTTGTAAAG+AGG 0.504738 4_3:-63497526 Msa0655080:CDS
AAATTCAAGTTCATCGCCCT+CGG 0.506358 4_3:+63497175 None:intergenic
TAGGTCCAATCCTCTTTACA+AGG 0.508685 4_3:+63497516 None:intergenic
GTAATCTTCAAAGTTAATCA+AGG 0.509932 4_3:-63497845 Msa0655080:CDS
CACTTGCTTATCATTGATTG+TGG 0.513008 4_3:-63497888 Msa0655080:CDS
ATGGCACAGACAAAGTTAGT+TGG 0.513478 4_3:-63499829 Msa0655080:CDS
GGTTGGAGGAACGTGAATCA+TGG 0.513701 4_3:-63500283 Msa0655080:CDS
GATTCTTTGCATTGCTGTCA+CGG 0.514147 4_3:-63498137 Msa0655080:CDS
ATCAAATGATTTGTGATGAA+GGG 0.515076 4_3:+63496942 None:intergenic
ACAGAAGCTTGACCAGCCTA+TGG 0.515105 4_3:-63501736 Msa0655080:CDS
CTTTGGTTTCTCCTAATAGG+AGG 0.516527 4_3:-63499785 Msa0655080:CDS
AAAGATGAAGAGGAAGTACT+TGG 0.516753 4_3:-63501285 Msa0655080:CDS
CAAGCTTAACAAACAGTGAA+AGG 0.516927 4_3:+63497402 None:intergenic
CAGCCTATGGAGGAAGAGGC+AGG 0.517760 4_3:-63501723 Msa0655080:CDS
TTGGCCACTTACTTGGCCGC+AGG 0.518196 4_3:+63497199 None:intergenic
ACAGTGATATTCACATTTGG+CGG 0.519018 4_3:+63497227 None:intergenic
ACACGAACAAGTCCTAAACT+TGG 0.520151 4_3:+63497692 None:intergenic
CAGCAATGCAAAGAATCATA+AGG 0.522136 4_3:+63498143 None:intergenic
CACAGTTGTGATGGCAAGGA+GGG 0.523327 4_3:-63497108 Msa0655080:CDS
TTTAGAAGAGGTGGAAAACA+AGG 0.524364 4_3:-63499686 Msa0655080:CDS
ACCTGCATGGTAATCGGAGA+CGG 0.529408 4_3:-63500227 Msa0655080:CDS
AAACAAGGATGGACTTCCCT+TGG 0.530115 4_3:-63499671 Msa0655080:CDS
GCCGTTCTACCTTCCATGAA+AGG 0.530220 4_3:-63500331 Msa0655080:CDS
CAGTTTATATGGAGGACAGC+AGG 0.530247 4_3:-63497342 Msa0655080:CDS
GTATGCAGCTTGTCCAGAAT+AGG 0.531509 4_3:+63498783 None:intergenic
ATGTTGCAGTTATTGTCGCC+TGG 0.531764 4_3:+63498275 None:intergenic
GCATATGTACCTGATATAGC+CGG 0.535287 4_3:+63500194 None:intergenic
CTGAGACCGGAAAATGAGAT+AGG 0.535427 4_3:+63498854 None:intergenic
AACCTCAACTTTGCATAGGA+TGG 0.539090 4_3:+63496914 None:intergenic
CAAAGTTAATCAAGGTGGAT+GGG 0.539107 4_3:-63497837 Msa0655080:CDS
TGTTAAGCTTGAATCTATGA+TGG 0.539727 4_3:-63497390 Msa0655080:CDS
AGGTCCTGCGGCCAAGTAAG+TGG 0.539957 4_3:-63497203 Msa0655080:CDS
ATTAAGCAAGCCCTTGCTCA+TGG 0.540837 4_3:-63498244 Msa0655080:CDS
AGCAAGGACAAGAATAAGAA+TGG 0.541082 4_3:+63500253 None:intergenic
TGTCCTTGCTGGCACCTGCA+TGG 0.541400 4_3:-63500240 Msa0655080:CDS
CATATGTACCTGATATAGCC+GGG 0.543217 4_3:+63500195 None:intergenic
ATCTGGACTATATATCTGGC+CGG 0.544750 4_3:+63498177 None:intergenic
AACATCTGTAAGTATGGAAG+CGG 0.546719 4_3:-63499749 Msa0655080:CDS
TGCCATCCTATGCAAAGTTG+AGG 0.546841 4_3:-63496916 Msa0655080:three_prime_UTR
GCAAGCTGTACAGCTGAGAC+CGG 0.546898 4_3:+63498841 None:intergenic
CAAGGATGGACTTCCCTTGG+TGG 0.548086 4_3:-63499668 Msa0655080:CDS
TTGTGAAAATTGAGTGCCGC+CGG 0.551017 4_3:+63496669 None:intergenic
TATATACAACTTTAACTCTA+GGG 0.551474 4_3:+63498215 None:intergenic
ACCTTTCATGGAAGGTAGAA+CGG 0.553074 4_3:+63500330 None:intergenic
GGTGCGATGCTGATTGGGAA+TGG 0.553849 4_3:+63500376 None:intergenic
CATGAGAGTCTCTTAAATGT+TGG 0.554708 4_3:-63496993 Msa0655080:CDS
TTTCTGCATTGTTGATTCTG+CGG 0.554902 4_3:-63501395 Msa0655080:CDS
GAAAACAACAACAGAATGGA+TGG 0.557910 4_3:+63497589 None:intergenic
TGATTTGTGATGAAGGGAAT+GGG 0.558978 4_3:+63496948 None:intergenic
ATGATTTGTGATGAAGGGAA+TGG 0.563113 4_3:+63496947 None:intergenic
AGGAAGAGGCAGGAAGACTC+AGG 0.565443 4_3:-63501713 Msa0655080:CDS
TTCTACAATATATTTCCGAA+CGG 0.568283 4_3:-63501312 Msa0655080:CDS
TAGGGAAACAACCATGAGCA+AGG 0.568381 4_3:+63498233 None:intergenic
TTTGCATTGCTGTCACGGCA+GGG 0.568672 4_3:-63498132 Msa0655080:CDS
CCTTCCTGTTTACACCGTCC+CGG 0.569084 4_3:-63497552 Msa0655080:CDS
GCTGAAAATGGCTTCAAGAG+TGG 0.573798 4_3:-63501805 Msa0655080:exon
TATATTGTAGAAAACATACA+AGG 0.574457 4_3:+63501323 None:intergenic
AATCAGCCCCATATGAGTAA+TGG 0.574491 4_3:-63500035 Msa0655080:intron
CAACAGAATGGATGGCTGGT+AGG 0.574816 4_3:+63497597 None:intergenic
AGCAAATGACCTTTCATGGA+AGG 0.576121 4_3:+63500322 None:intergenic
ACAACAACAGAATGGATGGC+TGG 0.578367 4_3:+63497593 None:intergenic
GAATAGGCTAAAAGAAGGCA+AGG 0.578682 4_3:+63498799 None:intergenic
TAACTGCAGGGATGCTGGGG+TGG 0.578720 4_3:-63497147 Msa0655080:CDS
CGGAGACGGGATTCTTACCC+CGG 0.579878 4_3:-63500213 Msa0655080:CDS
AAGAGTGGACACTGATGAAG+AGG 0.581426 4_3:-63501790 Msa0655080:CDS
GTATCTCTCTTCTTCCGGGA+CGG 0.583221 4_3:+63497538 None:intergenic
GTCCAGAATAGGCTAAAAGA+AGG 0.583432 4_3:+63498794 None:intergenic
GTCTACACAGAACTTGCAAG+TGG 0.583444 4_3:-63497653 Msa0655080:CDS
AGAATGGATGGCTGGTAGGT+TGG 0.583797 4_3:+63497601 None:intergenic
CCTGCATGGTAATCGGAGAC+GGG 0.583917 4_3:-63500226 Msa0655080:CDS
ATTAGGAAACACAGTTGTGA+TGG 0.587624 4_3:-63497117 Msa0655080:CDS
GTTCATGTGAAGGAAGATTG+TGG 0.588609 4_3:+63502556 None:intergenic
GAATAACTGCAGGGATGCTG+GGG 0.589642 4_3:-63497150 Msa0655080:CDS
GAAACACAGTTGTGATGGCA+AGG 0.591010 4_3:-63497112 Msa0655080:CDS
GAAGAGGTGGAAAACAAGGA+TGG 0.591042 4_3:-63499682 Msa0655080:CDS
GAACAACATCACCTTGCTTG+CGG 0.591857 4_3:-63496872 Msa0655080:three_prime_UTR
GTGATATTCACATTTGGCGG+CGG 0.592182 4_3:+63497230 None:intergenic
ATGCAAGATTGTTCATGTGA+AGG 0.593342 4_3:+63502546 None:intergenic
GAACGGTGTGAAAGATGAAG+AGG 0.595547 4_3:-63501295 Msa0655080:CDS
AGCACTGATTACCGCAAGCA+AGG 0.598133 4_3:+63496861 None:intergenic
CAAGTAAGTGGCCAAACCGA+GGG 0.598214 4_3:-63497191 Msa0655080:CDS
ATATAGTCCAGATATCAATT+GGG 0.598472 4_3:-63498167 Msa0655080:CDS
TGATAACAAAGGTAGTATGT+GGG 0.599126 4_3:-63501766 Msa0655080:CDS
CTCAAACCTCAACTTTGCAT+AGG 0.599492 4_3:+63496910 None:intergenic
CGACTAAAATGAATTAACTG+TGG 0.600944 4_3:-63496751 Msa0655080:three_prime_UTR
TTACCACATCTTTCGATGTG+TGG 0.605821 4_3:-63497489 Msa0655080:CDS
CCAAGTAAGTGGCCAAACCG+AGG 0.608155 4_3:-63497192 Msa0655080:CDS
GACCGGAAAATGAGATAGGT+CGG 0.608967 4_3:+63498858 None:intergenic
AGTATTTGTTGTTGCAACAG+CGG 0.611089 4_3:-63498314 Msa0655080:CDS
GTACAATCTGCTACTTGTGA+CGG 0.612482 4_3:+63502388 None:intergenic
CACGAACAAGTCCTAAACTT+GGG 0.614583 4_3:+63497693 None:intergenic
AATATCACTGTTAGGTCCTG+CGG 0.616362 4_3:-63497215 Msa0655080:CDS
ATAGTAAAGTCTCGATGGCA+TGG 0.620677 4_3:-63497730 Msa0655080:CDS
AAGCACGACTTCTTCGAATG+TGG 0.624780 4_3:-63497297 Msa0655080:CDS
AATCAATGATAAGCAAGTGA+AGG 0.625371 4_3:+63497892 None:intergenic
ATTTCTTAGGAAAATATGCA+GGG 0.625694 4_3:-63497042 Msa0655080:CDS
ATACGAAAACAACAACAGAA+TGG 0.631139 4_3:+63497585 None:intergenic
ACTAATTGTGATGCTTCACG+TGG 0.632596 4_3:-63496608 Msa0655080:three_prime_UTR
AACACTCCGGCAATTACAAG+AGG 0.633389 4_3:+63497812 None:intergenic
ATCTTCAAAGTTAATCAAGG+TGG 0.637689 4_3:-63497842 Msa0655080:CDS
AATGCATAGTAAAGTCTCGA+TGG 0.638063 4_3:-63497735 Msa0655080:CDS
AAGCTTGAATCTATGATGGA+AGG 0.641141 4_3:-63497386 Msa0655080:CDS
AGGGAAACAACCATGAGCAA+GGG 0.643819 4_3:+63498234 None:intergenic
GAAGCTTGACCAGCCTATGG+AGG 0.647530 4_3:-63501733 Msa0655080:CDS
ACATCTTTCGATGTGTGGCA+CGG 0.647935 4_3:-63497484 Msa0655080:CDS
AACATACCATTACTCATATG+GGG 0.653081 4_3:+63500029 None:intergenic
GATGAATACAGTTTATATGG+AGG 0.656772 4_3:-63497350 Msa0655080:CDS
CCGGGACGGTGTAAACAGGA+AGG 0.657637 4_3:+63497552 None:intergenic
GATGAATTTATTAGGGACGG+AGG 0.657712 4_3:-63498890 Msa0655080:intron
TTACCATGCAGGTGCCAGCA+AGG 0.657855 4_3:+63500237 None:intergenic
GATGAAGAGGGTGATAACAA+AGG 0.665526 4_3:-63501777 Msa0655080:CDS
TTATATGGAGGACAGCAGGA+TGG 0.666470 4_3:-63497338 Msa0655080:CDS
ACACAGTTGTGATGGCAAGG+AGG 0.669872 4_3:-63497109 Msa0655080:CDS
AGAGCAAATGACAATGGACA+AGG 0.674340 4_3:-63501195 Msa0655080:intron
GTGTTAAGAGCAAATGACAA+TGG 0.677304 4_3:-63501201 Msa0655080:CDS
TTCGTTAACAGGTACTGCAG+TGG 0.679357 4_3:-63497996 Msa0655080:intron
GTGCCACACATCGAAAGATG+TGG 0.686236 4_3:+63497486 None:intergenic
GTGATGAAATGAGAAAAGAT+CGG 0.689117 4_3:+63497623 None:intergenic
TACTGAGCATGATACCACCA+AGG 0.690342 4_3:+63499654 None:intergenic
ACTGAGCATGATACCACCAA+GGG 0.691706 4_3:+63499655 None:intergenic
CTCCTATTAGGAGAAACCAA+AGG 0.694794 4_3:+63499786 None:intergenic
AGAGTGGACACTGATGAAGA+GGG 0.700617 4_3:-63501789 Msa0655080:CDS
CTATTAGGAGAAACCAAAGG+AGG 0.702161 4_3:+63499789 None:intergenic
ATGAAATGAGAAAAGATCGG+TGG 0.702922 4_3:+63497626 None:intergenic
TAAAATCTTAAACTAACCGG+CGG 0.704214 4_3:-63496685 Msa0655080:three_prime_UTR
GTGACGGAGAGTACAAAACT+GGG 0.706391 4_3:+63502404 None:intergenic
ATATTGTAGAAAACATACAA+GGG 0.712231 4_3:+63501324 None:intergenic
TTTGTGATGAAGGGAATGGG+AGG 0.712327 4_3:+63496951 None:intergenic
ATATGTACCTGATATAGCCG+GGG 0.713157 4_3:+63500196 None:intergenic
ATATTTGAGAAGAGGCACCA+AGG 0.717350 4_3:+63501233 None:intergenic
ACATTTAAGAGACTCTCATG+AGG 0.718347 4_3:+63496996 None:intergenic
GATGGCGTGTTGAATAACAA+CGG 0.731429 4_3:-63497320 Msa0655080:CDS
AGGCGAGTACAAGAATCCAG+TGG 0.751362 4_3:+63497912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTTTTTGAAAAAA+TGG - chr4_3:63497251-63497270 Msa0655080:CDS 10.0%
!!! TCATATATACAATTTTTTAT+AGG + chr4_3:63498628-63498647 None:intergenic 10.0%
!!! AATTTATTTTGCTTTATATA+TGG + chr4_3:63499995-63500014 None:intergenic 10.0%
!!! AAAGAATATTACTATTTTTT+GGG - chr4_3:63500061-63500080 Msa0655080:CDS 10.0%
!! AAAAAAATTATTGAATAAGT+AGG + chr4_3:63500241-63500260 None:intergenic 10.0%
!! ATAAACATAAATTAAGATTG+AGG + chr4_3:63497117-63497136 None:intergenic 15.0%
!! CTAAAAAAAATCAACAAAAT+TGG + chr4_3:63497162-63497181 None:intergenic 15.0%
!! AAATTAAAACACATTTATAC+TGG + chr4_3:63497199-63497218 None:intergenic 15.0%
!!! TGAAATATTGTTTTTTCTTA+AGG - chr4_3:63497413-63497432 Msa0655080:CDS 15.0%
!!! GAAATATTGTTTTTTCTTAA+GGG - chr4_3:63497414-63497433 Msa0655080:CDS 15.0%
!!! TCAATTGTTTTCTAAATTTT+TGG - chr4_3:63498112-63498131 Msa0655080:CDS 15.0%
!!! CTTTTTTCTTTTTACTTTTT+TGG - chr4_3:63498555-63498574 Msa0655080:intron 15.0%
!!! CTTTGATTTTTTTTGTTTAT+TGG + chr4_3:63500045-63500064 None:intergenic 15.0%
!!! CAAAGAATATTACTATTTTT+TGG - chr4_3:63500060-63500079 Msa0655080:CDS 15.0%
!!! TTCAATAATTTTTTTCTCTT+TGG - chr4_3:63500246-63500265 Msa0655080:CDS 15.0%
!!! TCAATAATTTTTTTCTCTTT+GGG - chr4_3:63500247-63500266 Msa0655080:CDS 15.0%
!!! ACAATATTTTTAAACTCTAT+GGG + chr4_3:63500805-63500824 None:intergenic 15.0%
!!! TACAATATTTTTAAACTCTA+TGG + chr4_3:63500806-63500825 None:intergenic 15.0%
!!! TTTCTCTTATATTTTTCTAA+TGG - chr4_3:63500884-63500903 Msa0655080:intron 15.0%
!! ATATCATGATTAAAATCATA+AGG + chr4_3:63501337-63501356 None:intergenic 15.0%
!!! TATGATTTTAATCATGATAT+TGG - chr4_3:63501337-63501356 Msa0655080:CDS 15.0%
!! ATTATATATATGCATTTCTT+AGG - chr4_3:63502227-63502246 Msa0655080:intron 15.0%
!!! TTTTTATTTTCACAATCAAG+TGG - chr4_3:63496986-63497005 Msa0655080:CDS 20.0%
!!! TTTTATTTTCACAATCAAGT+GGG - chr4_3:63496987-63497006 Msa0655080:CDS 20.0%
!!! TGATTTTTTTTAGTACTCTA+AGG - chr4_3:63497169-63497188 Msa0655080:CDS 20.0%
!! CTAAACTTTGACAAAAAAAA+AGG + chr4_3:63497344-63497363 None:intergenic 20.0%
!! AAAATCATAATCACAAACAT+TGG + chr4_3:63497737-63497756 None:intergenic 20.0%
!! ATATTGTAGAAAACATACAA+GGG + chr4_3:63497961-63497980 None:intergenic 20.0%
!! TATATTGTAGAAAACATACA+AGG + chr4_3:63497962-63497981 None:intergenic 20.0%
!! ATAAAAACATATTTGAGAAG+AGG + chr4_3:63498060-63498079 None:intergenic 20.0%
!!! GTTAATATTTGCATCTTTTA+TGG - chr4_3:63498253-63498272 Msa0655080:CDS 20.0%
!! AAAAAAGGATGGTTATATTA+GGG - chr4_3:63498446-63498465 Msa0655080:intron 20.0%
!!! ATTTTAATTACAGTTATGGA+AGG + chr4_3:63498741-63498760 None:intergenic 20.0%
!!! GAGTATTTTAATTACAGTTA+TGG + chr4_3:63498745-63498764 None:intergenic 20.0%
!!! TGTTTTTAACGAATTTAAGT+TGG - chr4_3:63499338-63499357 Msa0655080:intron 20.0%
!!! GTTTTTAACGAATTTAAGTT+GGG - chr4_3:63499339-63499358 Msa0655080:intron 20.0%
!! ATATTTAACATCTGTAAGTA+TGG - chr4_3:63499527-63499546 Msa0655080:intron 20.0%
!! AAATAGTGATATATGTAAAC+AGG + chr4_3:63499578-63499597 None:intergenic 20.0%
!!! ATATATCACTATTTTAGAAG+AGG - chr4_3:63499584-63499603 Msa0655080:intron 20.0%
!! TCAATGTAATTATTAGTGTT+GGG - chr4_3:63499693-63499712 Msa0655080:CDS 20.0%
!! TAGCCAACTATATATTATTA+GGG - chr4_3:63500194-63500213 Msa0655080:intron 20.0%
!!! CAATAATTTTTTTCTCTTTG+GGG - chr4_3:63500248-63500267 Msa0655080:CDS 20.0%
!!! ACTTTTGGATGAATTTATTA+GGG - chr4_3:63500385-63500404 Msa0655080:CDS 20.0%
!! TATATACAACTTTAACTCTA+GGG + chr4_3:63501070-63501089 None:intergenic 20.0%
!! AATTGAGAGAAAATATTCAT+CGG + chr4_3:63501239-63501258 None:intergenic 20.0%
!!! TTTTTATCATTATGTTTGTC+TGG - chr4_3:63501492-63501511 Msa0655080:intron 20.0%
!! GAAAATAATCTCAAACAAAA+AGG + chr4_3:63502512-63502531 None:intergenic 20.0%
!! TCTTAAAATCTTAAACTAAC+CGG - chr4_3:63502594-63502613 Msa0655080:five_prime_UTR 20.0%
!!! TTTATTTTCACAATCAAGTG+GGG - chr4_3:63496988-63497007 Msa0655080:CDS 25.0%
! TTGAAAATTCCATTGATCTA+TGG + chr4_3:63497316-63497335 None:intergenic 25.0%
! TGATATACTACTATAGTCTA+TGG - chr4_3:63497613-63497632 Msa0655080:CDS 25.0%
! CCAAAAAGAAAATCAATATG+AGG + chr4_3:63497659-63497678 None:intergenic 25.0%
!!! CCTCATATTGATTTTCTTTT+TGG - chr4_3:63497656-63497675 Msa0655080:CDS 25.0%
!!! TTTCTTTTTGGTAGACAAAA+TGG - chr4_3:63497668-63497687 Msa0655080:CDS 25.0%
! TTCTACAATATATTTCCGAA+CGG - chr4_3:63497970-63497989 Msa0655080:CDS 25.0%
! TCATTACAAATGGAAACAAA+AGG + chr4_3:63498208-63498227 None:intergenic 25.0%
! AACTACACTAAATATACACT+GGG + chr4_3:63498236-63498255 None:intergenic 25.0%
! TAACTACACTAAATATACAC+TGG + chr4_3:63498237-63498256 None:intergenic 25.0%
! TGCCAGATACAAATTTAAAA+AGG - chr4_3:63498283-63498302 Msa0655080:CDS 25.0%
! GCCAGATACAAATTTAAAAA+GGG - chr4_3:63498284-63498303 Msa0655080:CDS 25.0%
!! TCCCTTTTTAAATTTGTATC+TGG + chr4_3:63498288-63498307 None:intergenic 25.0%
! GAAAAAAGGATGGTTATATT+AGG - chr4_3:63498445-63498464 Msa0655080:intron 25.0%
! TATTTCCCTGTTCTAATATA+GGG - chr4_3:63498479-63498498 Msa0655080:intron 25.0%
! TATAACCCTATATTAGAACA+GGG + chr4_3:63498487-63498506 None:intergenic 25.0%
! TTATAACCCTATATTAGAAC+AGG + chr4_3:63498488-63498507 None:intergenic 25.0%
! AAAAAAGAAATTGCCTCTAA+AGG + chr4_3:63498542-63498561 None:intergenic 25.0%
!! ATATGTTGTTAGTTCTTCAT+CGG + chr4_3:63498930-63498949 None:intergenic 25.0%
! TAAGAATCTCTTCAAATAGA+TGG + chr4_3:63499179-63499198 None:intergenic 25.0%
! TAAAACTACAATGGAAGATA+TGG + chr4_3:63499203-63499222 None:intergenic 25.0%
!!! ATCTTCCATTGTAGTTTTAT+CGG - chr4_3:63499204-63499223 Msa0655080:intron 25.0%
!! TATTTTTCTATCACTATGCA+TGG - chr4_3:63499305-63499324 Msa0655080:intron 25.0%
! TTGAAAAGCTTCTTTATCTT+TGG - chr4_3:63499367-63499386 Msa0655080:intron 25.0%
!! ATTGCTGTTGTAATATTAGT+TGG - chr4_3:63499410-63499429 Msa0655080:intron 25.0%
! ATATATGTAAACAGGAGAAA+AGG + chr4_3:63499570-63499589 None:intergenic 25.0%
! ACTAATAATTACATTGAGGA+AGG + chr4_3:63499690-63499709 None:intergenic 25.0%
! CAACACTAATAATTACATTG+AGG + chr4_3:63499694-63499713 None:intergenic 25.0%
! CTCAATGTAATTATTAGTGT+TGG - chr4_3:63499692-63499711 Msa0655080:CDS 25.0%
! AAAGATATGAAAAACACAAG+CGG + chr4_3:63499911-63499930 None:intergenic 25.0%
!!! CTTACTTTTCAATCAAACTT+TGG + chr4_3:63500129-63500148 None:intergenic 25.0%
! TTTCTACCTAAAATTGAACT+TGG - chr4_3:63500169-63500188 Msa0655080:intron 25.0%
! TTCTACCTAAAATTGAACTT+GGG - chr4_3:63500170-63500189 Msa0655080:intron 25.0%
! GTAGCCAACTATATATTATT+AGG - chr4_3:63500193-63500212 Msa0655080:intron 25.0%
! AGCCAACTATATATTATTAG+GGG - chr4_3:63500195-63500214 Msa0655080:intron 25.0%
! TACCCCTAATAATATATAGT+TGG + chr4_3:63500200-63500219 None:intergenic 25.0%
! AAAATCATTAACAGATGAAG+TGG - chr4_3:63500336-63500355 Msa0655080:CDS 25.0%
!! GACTTTTGGATGAATTTATT+AGG - chr4_3:63500384-63500403 Msa0655080:CDS 25.0%
! AATGAGTCAAGTTATTCATA+AGG + chr4_3:63500524-63500543 None:intergenic 25.0%
! TATATTGAAATCTTCATGTC+TGG - chr4_3:63500594-63500613 Msa0655080:intron 25.0%
! GTATATACAACTTTAACTCT+AGG + chr4_3:63501071-63501090 None:intergenic 25.0%
! TATATAGTCCAGATATCAAT+TGG - chr4_3:63501114-63501133 Msa0655080:intron 25.0%
! ATATAGTCCAGATATCAATT+GGG - chr4_3:63501115-63501134 Msa0655080:intron 25.0%
! TGAATTTACAATTCGTTAAC+AGG - chr4_3:63501275-63501294 Msa0655080:CDS 25.0%
!! TTTTAATCATGATATTGGTG+TGG - chr4_3:63501342-63501361 Msa0655080:CDS 25.0%
! GTAATCTTCAAAGTTAATCA+AGG - chr4_3:63501437-63501456 Msa0655080:intron 25.0%
! CATAATGATAAAAAACACTC+CGG + chr4_3:63501486-63501505 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG - chr4_3:63501929-63501948 Msa0655080:intron 25.0%
!! TTGAATTTTTGAATAACTGC+AGG - chr4_3:63502122-63502141 Msa0655080:intron 25.0%
!! TGAATTTTTGAATAACTGCA+GGG - chr4_3:63502123-63502142 Msa0655080:intron 25.0%
! ATTTCTTAGGAAAATATGCA+GGG - chr4_3:63502240-63502259 Msa0655080:intron 25.0%
!! ATCAAATGATTTGTGATGAA+GGG + chr4_3:63502343-63502362 None:intergenic 25.0%
! TCAAACAAAAAGGCTATTAA+CGG + chr4_3:63502502-63502521 None:intergenic 25.0%
!!! GGTTAGTTTAAGATTTTAAG+AGG + chr4_3:63502595-63502614 None:intergenic 25.0%
ATCAGAAAGAAGAAGTGATA+TGG + chr4_3:63496808-63496827 None:intergenic 30.0%
CATAAATTAAGATTGAGGAC+TGG + chr4_3:63497112-63497131 None:intergenic 30.0%
TTTCACTTTCCATAGATCAA+TGG - chr4_3:63497304-63497323 Msa0655080:CDS 30.0%
TAGTAGTAGAATTGAGTAAG+AGG - chr4_3:63497438-63497457 Msa0655080:CDS 30.0%
GAAAATTGCATAGCTGAAAA+TGG - chr4_3:63497465-63497484 Msa0655080:CDS 30.0%
TGATAACAAAGGTAGTATGT+GGG - chr4_3:63497516-63497535 Msa0655080:CDS 30.0%
ATTAGTGCATCAGTAAAACA+CGG + chr4_3:63497796-63497815 None:intergenic 30.0%
TAAGCTAATATGTAAGCTCT+TGG - chr4_3:63497815-63497834 Msa0655080:CDS 30.0%
ATATGTAAGCTCTTGGAATT+TGG - chr4_3:63497822-63497841 Msa0655080:CDS 30.0%
TAATCAATAGCATGCTATAG+TGG - chr4_3:63498328-63498347 Msa0655080:CDS 30.0%
TGCTAAATGCTTCAGAAAAA+AGG - chr4_3:63498431-63498450 Msa0655080:intron 30.0%
AAATGCTTCAGAAAAAAGGA+TGG - chr4_3:63498435-63498454 Msa0655080:intron 30.0%
GTATTTCCCTGTTCTAATAT+AGG - chr4_3:63498478-63498497 Msa0655080:intron 30.0%
!! TAGTTTTACTAAGCCTTTAG+AGG - chr4_3:63498526-63498545 Msa0655080:intron 30.0%
!!! GTGCATAGTTTTGTATAGAA+TGG - chr4_3:63498664-63498683 Msa0655080:intron 30.0%
TTGCTGCAAAAACTAAAAGA+TGG - chr4_3:63498978-63498997 Msa0655080:intron 30.0%
TGCAAAAACTAAAAGATGGT+TGG - chr4_3:63498982-63499001 Msa0655080:intron 30.0%
AAAAACTAAAAGATGGTTGG+AGG - chr4_3:63498985-63499004 Msa0655080:intron 30.0%
AACATACCATTACTCATATG+GGG + chr4_3:63499256-63499275 None:intergenic 30.0%
GAACATACCATTACTCATAT+GGG + chr4_3:63499257-63499276 None:intergenic 30.0%
ATATACCAATACCTCCTATT+AGG + chr4_3:63499511-63499530 None:intergenic 30.0%
!! TATCACTATTTTAGAAGAGG+TGG - chr4_3:63499587-63499606 Msa0655080:intron 30.0%
TGTATTTAAGTACTACAGTC+TGG + chr4_3:63499785-63499804 None:intergenic 30.0%
!! TAATGGAAAGGTATTGCATT+CGG - chr4_3:63499836-63499855 Msa0655080:CDS 30.0%
CAATATTTAACCATGGAGTT+CGG + chr4_3:63499880-63499899 None:intergenic 30.0%
! AAGCTAGCAAAATTTTCATG+AGG - chr4_3:63499966-63499985 Msa0655080:intron 30.0%
TCTACCTAAAATTGAACTTG+GGG - chr4_3:63500171-63500190 Msa0655080:intron 30.0%
TTGGATGAATTTATTAGGGA+CGG - chr4_3:63500389-63500408 Msa0655080:CDS 30.0%
! GCTTTTTATCTTTCTATTCC+AGG - chr4_3:63500552-63500571 Msa0655080:intron 30.0%
TAGGTAAGAATCAGAGAAAA+AGG + chr4_3:63500712-63500731 None:intergenic 30.0%
! TTTTCTCTGATTCTTACCTA+TGG - chr4_3:63500712-63500731 Msa0655080:intron 30.0%
GACTAACATGTTAATACCAT+AGG + chr4_3:63500731-63500750 None:intergenic 30.0%
ACATCAGAATAGAAAACTGA+GGG - chr4_3:63500847-63500866 Msa0655080:intron 30.0%
ATCAACATCTAAGTGTCTAA+TGG + chr4_3:63500915-63500934 None:intergenic 30.0%
! GTTTTGCAGAAAGAATATAC+TGG - chr4_3:63500943-63500962 Msa0655080:intron 30.0%
TATACATCAAAGAAGTTTGC+CGG - chr4_3:63501086-63501105 Msa0655080:intron 30.0%
TGATATCTGGACTATATATC+TGG + chr4_3:63501112-63501131 None:intergenic 30.0%
TTCGAAAATCAAAACCAGAT+TGG - chr4_3:63501173-63501192 Msa0655080:intron 30.0%
AATCAATGATAAGCAAGTGA+AGG + chr4_3:63501393-63501412 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG - chr4_3:63501440-63501459 Msa0655080:intron 30.0%
ATTATGTTTGTCTGGCATTA+CGG - chr4_3:63501500-63501519 Msa0655080:intron 30.0%
GTGATGAAATGAGAAAAGAT+CGG + chr4_3:63501662-63501681 None:intergenic 30.0%
ATACGAAAACAACAACAGAA+TGG + chr4_3:63501700-63501719 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG - chr4_3:63501892-63501911 Msa0655080:intron 30.0%
GATGAATACAGTTTATATGG+AGG - chr4_3:63501932-63501951 Msa0655080:intron 30.0%
CTAACAGTGATATTCACATT+TGG + chr4_3:63502061-63502080 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG - chr4_3:63502059-63502078 Msa0655080:intron 30.0%
CATTTCTTAGGAAAATATGC+AGG - chr4_3:63502239-63502258 Msa0655080:intron 30.0%
! CATCAAATGATTTGTGATGA+AGG + chr4_3:63502344-63502363 None:intergenic 30.0%
!!! TGCTAGAATCGACTTTTTTT+TGG - chr4_3:63502440-63502459 Msa0655080:five_prime_UTR 30.0%
CGACTAAAATGAATTAACTG+TGG - chr4_3:63502531-63502550 Msa0655080:five_prime_UTR 30.0%
TAAAATCTTAAACTAACCGG+CGG - chr4_3:63502597-63502616 Msa0655080:five_prime_UTR 30.0%
TATATGCATGCAAGATGTAT+TGG + chr4_3:63502655-63502674 None:intergenic 30.0%
ATGCAAGATTGTTCATGTGA+AGG + chr4_3:63496739-63496758 None:intergenic 35.0%
!! TGTTATCTGATTCTGAAGCA+AGG + chr4_3:63496934-63496953 None:intergenic 35.0%
GTGATAACAAAGGTAGTATG+TGG - chr4_3:63497515-63497534 Msa0655080:CDS 35.0%
!! TTTCTGCATTGTTGATTCTG+CGG - chr4_3:63497887-63497906 Msa0655080:CDS 35.0%
!! AAAGATGAAGAGGAAGTACT+TGG - chr4_3:63497997-63498016 Msa0655080:intron 35.0%
GATTATCTACTCTCTTACCT+TGG - chr4_3:63498032-63498051 Msa0655080:intron 35.0%
GTGTTAAGAGCAAATGACAA+TGG - chr4_3:63498081-63498100 Msa0655080:intron 35.0%
ATTCCCTTTGTACAATCTCA+AGG + chr4_3:63498139-63498158 None:intergenic 35.0%
ACAAATGGAAACAAAAGGAG+TGG + chr4_3:63498203-63498222 None:intergenic 35.0%
CTGGGAATCATCATTACAAA+TGG + chr4_3:63498218-63498237 None:intergenic 35.0%
! GCATTTAGCAGTTGCAATTT+TGG + chr4_3:63498421-63498440 None:intergenic 35.0%
GTATATCAGTTACCTAGTCA+TGG + chr4_3:63498606-63498625 None:intergenic 35.0%
AAAACTGACATTTGTAGAGC+AGG - chr4_3:63498833-63498852 Msa0655080:CDS 35.0%
! TGGTTTTTATCTTTGCGTGT+CGG + chr4_3:63498889-63498908 None:intergenic 35.0%
AGCAAGGACAAGAATAAGAA+TGG + chr4_3:63499032-63499051 None:intergenic 35.0%
ATTCTTATTCTTGTCCTTGC+TGG - chr4_3:63499031-63499050 Msa0655080:intron 35.0%
! ACTAATTAGCTTCAGAGAGA+AGG + chr4_3:63499113-63499132 None:intergenic 35.0%
AACAGCCGATAAAACTACAA+TGG + chr4_3:63499212-63499231 None:intergenic 35.0%
!!! ATTGTAGTTTTATCGGCTGT+TGG - chr4_3:63499211-63499230 Msa0655080:intron 35.0%
GGAACATACCATTACTCATA+TGG + chr4_3:63499258-63499277 None:intergenic 35.0%
AATTGTCTTGCTACAGAAGT+AGG + chr4_3:63499279-63499298 None:intergenic 35.0%
GCTTCTTTATCTTTGGATAC+AGG - chr4_3:63499374-63499393 Msa0655080:intron 35.0%
TTTATCTTTGGATACAGGTG+TGG - chr4_3:63499379-63499398 Msa0655080:intron 35.0%
!! TTTTTCAGCCTGCAACATTA+TGG - chr4_3:63499434-63499453 Msa0655080:intron 35.0%
! TTTCTCCTAATAGGAGGTAT+TGG - chr4_3:63499503-63499522 Msa0655080:intron 35.0%
AACATCTGTAAGTATGGAAG+CGG - chr4_3:63499533-63499552 Msa0655080:intron 35.0%
TTTAGAAGAGGTGGAAAACA+AGG - chr4_3:63499596-63499615 Msa0655080:intron 35.0%
GAGCACACAATATTTAACCA+TGG + chr4_3:63499887-63499906 None:intergenic 35.0%
! CTAGCAAAATTTTCATGAGG+TGG - chr4_3:63499969-63499988 Msa0655080:intron 35.0%
TACCAATTGTTAGAACAGCA+GGG + chr4_3:63500310-63500329 None:intergenic 35.0%
ATACCAATTGTTAGAACAGC+AGG + chr4_3:63500311-63500330 None:intergenic 35.0%
! TTTTTGTCCTTGACGACTTT+TGG - chr4_3:63500370-63500389 Msa0655080:CDS 35.0%
AATTCATCCAAAAGTCGTCA+AGG + chr4_3:63500380-63500399 None:intergenic 35.0%
AGTAAAAAGTTCAGCTAACC+TGG + chr4_3:63500573-63500592 None:intergenic 35.0%
ACACTGACACTTTAGATTGA+AGG - chr4_3:63500624-63500643 Msa0655080:intron 35.0%
! TTCTGATGTGTTGATATGCT+TGG + chr4_3:63500836-63500855 None:intergenic 35.0%
CACATCAGAATAGAAAACTG+AGG - chr4_3:63500846-63500865 Msa0655080:intron 35.0%
!! AGTATTTGTTGTTGCAACAG+CGG - chr4_3:63500968-63500987 Msa0655080:intron 35.0%
ATAAGGACCCAATTGATATC+TGG + chr4_3:63501125-63501144 None:intergenic 35.0%
CAGCAATGCAAAGAATCATA+AGG + chr4_3:63501142-63501161 None:intergenic 35.0%
AACCAGATTGGAAATGCTTA+TGG - chr4_3:63501185-63501204 Msa0655080:intron 35.0%
TACCATAAGCATTTCCAATC+TGG + chr4_3:63501190-63501209 None:intergenic 35.0%
! CACTTGCTTATCATTGATTG+TGG - chr4_3:63501394-63501413 Msa0655080:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG - chr4_3:63501444-63501463 Msa0655080:intron 35.0%
CAAAGTTAATCAAGGTGGAT+GGG - chr4_3:63501445-63501464 Msa0655080:intron 35.0%
AATGCATAGTAAAGTCTCGA+TGG - chr4_3:63501547-63501566 Msa0655080:intron 35.0%
ATGAAATGAGAAAAGATCGG+TGG + chr4_3:63501659-63501678 None:intergenic 35.0%
GAAAACAACAACAGAATGGA+TGG + chr4_3:63501696-63501715 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG - chr4_3:63501756-63501775 Msa0655080:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG - chr4_3:63501761-63501780 Msa0655080:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG + chr4_3:63501788-63501807 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG + chr4_3:63501883-63501902 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG - chr4_3:63501896-63501915 Msa0655080:intron 35.0%
ACAGTGATATTCACATTTGG+CGG + chr4_3:63502058-63502077 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG - chr4_3:63502165-63502184 Msa0655080:intron 35.0%
ACATTTAAGAGACTCTCATG+AGG + chr4_3:63502289-63502308 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG - chr4_3:63502289-63502308 Msa0655080:intron 35.0%
! TGATTTGTGATGAAGGGAAT+GGG + chr4_3:63502337-63502356 None:intergenic 35.0%
! ATGATTTGTGATGAAGGGAA+TGG + chr4_3:63502338-63502357 None:intergenic 35.0%
!!! AGAGCAGAGTTTTGTTGTTG+TGG + chr4_3:63496663-63496682 None:intergenic 40.0%
!! GTCGTTTTGTTCAGCTTGTT+AGG + chr4_3:63496701-63496720 None:intergenic 40.0%
GTTCATGTGAAGGAAGATTG+TGG + chr4_3:63496729-63496748 None:intergenic 40.0%
! GTACAATCTGCTACTTGTGA+CGG + chr4_3:63496897-63496916 None:intergenic 40.0%
GATGAAGAGGGTGATAACAA+AGG - chr4_3:63497505-63497524 Msa0655080:CDS 40.0%
CAAAGGTAGTATGTGGGATT+TGG - chr4_3:63497522-63497541 Msa0655080:CDS 40.0%
TCTTCATCTTTCACACCGTT+CGG + chr4_3:63497988-63498007 None:intergenic 40.0%
!! ATATTTGAGAAGAGGCACCA+AGG + chr4_3:63498052-63498071 None:intergenic 40.0%
AGAGCAAATGACAATGGACA+AGG - chr4_3:63498087-63498106 Msa0655080:intron 40.0%
TGGTCCTTGAGATTGTACAA+AGG - chr4_3:63498132-63498151 Msa0655080:CDS 40.0%
GGTCCTTGAGATTGTACAAA+GGG - chr4_3:63498133-63498152 Msa0655080:CDS 40.0%
ATAGCATGCTATAGTGGCAT+TGG - chr4_3:63498334-63498353 Msa0655080:intron 40.0%
ATTGGAAATCTGTAGCAGAG+TGG - chr4_3:63498362-63498381 Msa0655080:intron 40.0%
! CTATGTTTTGCTCAAGACCT+AGG - chr4_3:63498580-63498599 Msa0655080:intron 40.0%
ACCTTTCATGGAAGGTAGAA+CGG + chr4_3:63498955-63498974 None:intergenic 40.0%
AGCAAATGACCTTTCATGGA+AGG + chr4_3:63498963-63498982 None:intergenic 40.0%
TTGCAGCAAATGACCTTTCA+TGG + chr4_3:63498967-63498986 None:intergenic 40.0%
ATATGTACCTGATATAGCCG+GGG + chr4_3:63499089-63499108 None:intergenic 40.0%
CATATGTACCTGATATAGCC+GGG + chr4_3:63499090-63499109 None:intergenic 40.0%
GCATATGTACCTGATATAGC+CGG + chr4_3:63499091-63499110 None:intergenic 40.0%
!!! TAGTTTTATCGGCTGTTGGT+GGG - chr4_3:63499215-63499234 Msa0655080:intron 40.0%
AATCAGCCCCATATGAGTAA+TGG - chr4_3:63499247-63499266 Msa0655080:intron 40.0%
ATGGCACAGACAAAGTTAGT+TGG - chr4_3:63499453-63499472 Msa0655080:intron 40.0%
AGAAACCAAAGGAGGACAAT+TGG + chr4_3:63499488-63499507 None:intergenic 40.0%
CTATTAGGAGAAACCAAAGG+AGG + chr4_3:63499496-63499515 None:intergenic 40.0%
! CTCCTTTGGTTTCTCCTAAT+AGG - chr4_3:63499494-63499513 Msa0655080:intron 40.0%
CTCCTATTAGGAGAAACCAA+AGG + chr4_3:63499499-63499518 None:intergenic 40.0%
! CTTTGGTTTCTCCTAATAGG+AGG - chr4_3:63499497-63499516 Msa0655080:intron 40.0%
GGTATCATGCTCAGTATAAC+AGG - chr4_3:63499635-63499654 Msa0655080:intron 40.0%
GGTATAGCTCACAGTTTACA+GGG - chr4_3:63499714-63499733 Msa0655080:CDS 40.0%
CCATTATCGCTGAAAGCTTA+GGG + chr4_3:63499822-63499841 None:intergenic 40.0%
TCCATTATCGCTGAAAGCTT+AGG + chr4_3:63499823-63499842 None:intergenic 40.0%
!! AGCTTTCAGCGATAATGGAA+AGG - chr4_3:63499824-63499843 Msa0655080:CDS 40.0%
! GCTACCCCAAGTTCAATTTT+AGG + chr4_3:63500178-63500197 None:intergenic 40.0%
ACCAATTGTTAGAACAGCAG+GGG + chr4_3:63500309-63500328 None:intergenic 40.0%
GATGAATTTATTAGGGACGG+AGG - chr4_3:63500392-63500411 Msa0655080:CDS 40.0%
TGTACAGCTTGCATTTACTC+TGG - chr4_3:63500452-63500471 Msa0655080:intron 40.0%
GAATAGGCTAAAAGAAGGCA+AGG + chr4_3:63500486-63500505 None:intergenic 40.0%
! TGCCTTCTTTTAGCCTATTC+TGG - chr4_3:63500486-63500505 Msa0655080:intron 40.0%
GTCCAGAATAGGCTAAAAGA+AGG + chr4_3:63500491-63500510 None:intergenic 40.0%
!! TAACATGTTAGTCTTGTGCC+TGG - chr4_3:63500738-63500757 Msa0655080:intron 40.0%
GAAACTATGACGCACTAACA+CGG + chr4_3:63500775-63500794 None:intergenic 40.0%
GCTGTTGCAACAACAAATAC+TGG + chr4_3:63500969-63500988 None:intergenic 40.0%
ATCTGGACTATATATCTGGC+CGG + chr4_3:63501108-63501127 None:intergenic 40.0%
GATTCTTTGCATTGCTGTCA+CGG - chr4_3:63501145-63501164 Msa0655080:intron 40.0%
ATAGTAAAGTCTCGATGGCA+TGG - chr4_3:63501552-63501571 Msa0655080:intron 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG + chr4_3:63501752-63501771 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG + chr4_3:63501769-63501788 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG - chr4_3:63501793-63501812 Msa0655080:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG - chr4_3:63501962-63501981 Msa0655080:intron 40.0%
AATATCACTGTTAGGTCCTG+CGG - chr4_3:63502067-63502086 Msa0655080:intron 40.0%
! AAATTCAAGTTCATCGCCCT+CGG + chr4_3:63502110-63502129 None:intergenic 40.0%
AACCTCAACTTTGCATAGGA+TGG + chr4_3:63502371-63502390 None:intergenic 40.0%
CTCAAACCTCAACTTTGCAT+AGG + chr4_3:63502375-63502394 None:intergenic 40.0%
CTATGCAAAGTTGAGGTTTG+AGG - chr4_3:63502373-63502392 Msa0655080:intron 40.0%
ACTAATTGTGATGCTTCACG+TGG - chr4_3:63502674-63502693 Msa0655080:five_prime_UTR 40.0%
! GTGACGGAGAGTACAAAACT+GGG + chr4_3:63496881-63496900 None:intergenic 45.0%
! TGTGACGGAGAGTACAAAAC+TGG + chr4_3:63496882-63496901 None:intergenic 45.0%
GCTGAAAATGGCTTCAAGAG+TGG - chr4_3:63497477-63497496 Msa0655080:CDS 45.0%
AAGAGTGGACACTGATGAAG+AGG - chr4_3:63497492-63497511 Msa0655080:CDS 45.0%
AGAGTGGACACTGATGAAGA+GGG - chr4_3:63497493-63497512 Msa0655080:CDS 45.0%
TGGCGTCGTTTATGGAGATT+TGG - chr4_3:63497927-63497946 Msa0655080:CDS 45.0%
GGCGTCGTTTATGGAGATTT+GGG - chr4_3:63497928-63497947 Msa0655080:CDS 45.0%
GAACGGTGTGAAAGATGAAG+AGG - chr4_3:63497987-63498006 Msa0655080:CDS 45.0%
!! ATAGTGGCATTGGCTGCTAT+TGG - chr4_3:63498344-63498363 Msa0655080:intron 45.0%
ACTGACATTTGTAGAGCAGG+TGG - chr4_3:63498836-63498855 Msa0655080:CDS 45.0%
ATTCTTACCCCGGCTATATC+AGG - chr4_3:63499079-63499098 Msa0655080:intron 45.0%
!!! GTAGTTTTATCGGCTGTTGG+TGG - chr4_3:63499214-63499233 Msa0655080:intron 45.0%
TGTCTGTGCCATAATGTTGC+AGG + chr4_3:63499445-63499464 None:intergenic 45.0%
TTGCTCCAATTGTCCTCCTT+TGG - chr4_3:63499480-63499499 Msa0655080:intron 45.0%
GAAGAGGTGGAAAACAAGGA+TGG - chr4_3:63499600-63499619 Msa0655080:intron 45.0%
! AAACAAGGATGGACTTCCCT+TGG - chr4_3:63499611-63499630 Msa0655080:intron 45.0%
ACTGAGCATGATACCACCAA+GGG + chr4_3:63499630-63499649 None:intergenic 45.0%
TACTGAGCATGATACCACCA+AGG + chr4_3:63499631-63499650 None:intergenic 45.0%
GGGTATAGCTCACAGTTTAC+AGG - chr4_3:63499713-63499732 Msa0655080:CDS 45.0%
TAGCTCACAGTTTACAGGGT+AGG - chr4_3:63499718-63499737 Msa0655080:CDS 45.0%
CCCTAAGCTTTCAGCGATAA+TGG - chr4_3:63499819-63499838 Msa0655080:CDS 45.0%
TTCGGAGACGTAGGCATAAT+TGG - chr4_3:63499854-63499873 Msa0655080:CDS 45.0%
ACCGAGTTACTGTTCTACAG+CGG - chr4_3:63499941-63499960 Msa0655080:intron 45.0%
!!! TTTTTTGGGTGCTAACCCTC+CGG - chr4_3:63500075-63500094 Msa0655080:intron 45.0%
TGATCCCGTCTCCTAAAAAC+CGG + chr4_3:63500097-63500116 None:intergenic 45.0%
TGTATGCTTTCAGGACCAAG+GGG + chr4_3:63500286-63500305 None:intergenic 45.0%
GTGTATGCTTTCAGGACCAA+GGG + chr4_3:63500287-63500306 None:intergenic 45.0%
ACCCCTGCTGTTCTAACAAT+TGG - chr4_3:63500305-63500324 Msa0655080:CDS 45.0%
GACCGGAAAATGAGATAGGT+CGG + chr4_3:63500427-63500446 None:intergenic 45.0%
CTGAGACCGGAAAATGAGAT+AGG + chr4_3:63500431-63500450 None:intergenic 45.0%
GTATGCAGCTTGTCCAGAAT+AGG + chr4_3:63500502-63500521 None:intergenic 45.0%
ATGTTGCAGTTATTGTCGCC+TGG + chr4_3:63501010-63501029 None:intergenic 45.0%
ATTAAGCAAGCCCTTGCTCA+TGG - chr4_3:63501038-63501057 Msa0655080:intron 45.0%
AGGGAAACAACCATGAGCAA+GGG + chr4_3:63501051-63501070 None:intergenic 45.0%
TAGGGAAACAACCATGAGCA+AGG + chr4_3:63501052-63501071 None:intergenic 45.0%
! TTCGTTAACAGGTACTGCAG+TGG - chr4_3:63501286-63501305 Msa0655080:CDS 45.0%
TGGGTTCCTCTTGTAATTGC+CGG - chr4_3:63501464-63501483 Msa0655080:intron 45.0%
AACACTCCGGCAATTACAAG+AGG + chr4_3:63501473-63501492 None:intergenic 45.0%
CTTGTTCGTGTACCTGGAAT+CGG - chr4_3:63501602-63501621 Msa0655080:intron 45.0%
GTCTACACAGAACTTGCAAG+TGG - chr4_3:63501629-63501648 Msa0655080:intron 45.0%
ACAACAACAGAATGGATGGC+TGG + chr4_3:63501692-63501711 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG + chr4_3:63501751-63501770 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG - chr4_3:63501798-63501817 Msa0655080:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG + chr4_3:63501838-63501857 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG - chr4_3:63501940-63501959 Msa0655080:intron 45.0%
TTATATGGAGGACAGCAGGA+TGG - chr4_3:63501944-63501963 Msa0655080:intron 45.0%
AAGCACGACTTCTTCGAATG+TGG - chr4_3:63501985-63502004 Msa0655080:intron 45.0%
GTGATATTCACATTTGGCGG+CGG + chr4_3:63502055-63502074 None:intergenic 45.0%
TTGAATAACTGCAGGGATGC+TGG - chr4_3:63502130-63502149 Msa0655080:intron 45.0%
TGAATAACTGCAGGGATGCT+GGG - chr4_3:63502131-63502150 Msa0655080:intron 45.0%
GAAACACAGTTGTGATGGCA+AGG - chr4_3:63502170-63502189 Msa0655080:intron 45.0%
TTTGTGATGAAGGGAATGGG+AGG + chr4_3:63502334-63502353 None:intergenic 45.0%
TGCCATCCTATGCAAAGTTG+AGG - chr4_3:63502366-63502385 Msa0655080:intron 45.0%
GAACAACATCACCTTGCTTG+CGG - chr4_3:63502410-63502429 Msa0655080:five_prime_UTR 45.0%
! TTGTGAAAATTGAGTGCCGC+CGG + chr4_3:63502616-63502635 None:intergenic 45.0%
!! TTAATTAAATAAATAAAACA+GGG + chr4_3:63497282-63497301 None:intergenic 5.0%
!! ATTAATTAAATAAATAAAAC+AGG + chr4_3:63497283-63497302 None:intergenic 5.0%
ACAGAAGCTTGACCAGCCTA+TGG - chr4_3:63497546-63497565 Msa0655080:CDS 50.0%
CGGCTTGCATATCAGAGTCT+TGG - chr4_3:63497907-63497926 Msa0655080:CDS 50.0%
CAGAGTCTTGGCGTCGTTTA+TGG - chr4_3:63497919-63497938 Msa0655080:CDS 50.0%
!! GAGTGGTTTGCTGCATTAGC+TGG - chr4_3:63498379-63498398 Msa0655080:intron 50.0%
TCAAGACCTAGGCCATGACT+AGG - chr4_3:63498591-63498610 Msa0655080:intron 50.0%
CAGTTACCTAGTCATGGCCT+AGG + chr4_3:63498600-63498619 None:intergenic 50.0%
! TCATCGGTGCGATGCTGATT+GGG + chr4_3:63498914-63498933 None:intergenic 50.0%
TTCATCGGTGCGATGCTGAT+TGG + chr4_3:63498915-63498934 None:intergenic 50.0%
GCCGTTCTACCTTCCATGAA+AGG - chr4_3:63498951-63498970 Msa0655080:intron 50.0%
GGTTGGAGGAACGTGAATCA+TGG - chr4_3:63498999-63499018 Msa0655080:intron 50.0%
ACCTGCATGGTAATCGGAGA+CGG - chr4_3:63499055-63499074 Msa0655080:intron 50.0%
! ATCGGCTGTTGGTGGGATTA+AGG - chr4_3:63499222-63499241 Msa0655080:intron 50.0%
GGTATTGCATTCGGAGACGT+AGG - chr4_3:63499845-63499864 Msa0655080:CDS 50.0%
GCATAATTGGCCGAACTCCA+TGG - chr4_3:63499867-63499886 Msa0655080:CDS 50.0%
GCCGCTGTAGAACAGTAACT+CGG + chr4_3:63499945-63499964 None:intergenic 50.0%
! GTGCTAACCCTCCGGTTTTT+AGG - chr4_3:63500083-63500102 Msa0655080:intron 50.0%
!! ACCCTCCGGTTTTTAGGAGA+CGG - chr4_3:63500089-63500108 Msa0655080:intron 50.0%
GGTGTATGCTTTCAGGACCA+AGG + chr4_3:63500288-63500307 None:intergenic 50.0%
! CGCCGACCTATCTCATTTTC+CGG - chr4_3:63500422-63500441 Msa0655080:CDS 50.0%
GTGAATCCAGTGTCTGACAC+CGG - chr4_3:63500646-63500665 Msa0655080:intron 50.0%
!! TAGTCTTGTGCCTGGTGTCT+CGG - chr4_3:63500746-63500765 Msa0655080:intron 50.0%
TTTGCATTGCTGTCACGGCA+GGG - chr4_3:63501150-63501169 Msa0655080:intron 50.0%
AGGCGAGTACAAGAATCCAG+TGG + chr4_3:63501373-63501392 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG - chr4_3:63501560-63501579 Msa0655080:intron 50.0%
TCTCGATGGCATGGATTCTC+GGG - chr4_3:63501561-63501580 Msa0655080:intron 50.0%
! GTGTAGACTAGTCCGATTCC+AGG + chr4_3:63501617-63501636 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG + chr4_3:63501684-63501703 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG + chr4_3:63501688-63501707 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG + chr4_3:63501747-63501766 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG + chr4_3:63501799-63501818 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG - chr4_3:63501803-63501822 Msa0655080:exon 50.0%
CAAGTAAGTGGCCAAACCGA+GGG - chr4_3:63502091-63502110 Msa0655080:intron 50.0%
GAATAACTGCAGGGATGCTG+GGG - chr4_3:63502132-63502151 Msa0655080:intron 50.0%
GCTGGGGTGGTTCACATATT+AGG - chr4_3:63502148-63502167 Msa0655080:intron 50.0%
ACACAGTTGTGATGGCAAGG+AGG - chr4_3:63502173-63502192 Msa0655080:intron 50.0%
CACAGTTGTGATGGCAAGGA+GGG - chr4_3:63502174-63502193 Msa0655080:intron 50.0%
!! AGCACTGATTACCGCAAGCA+AGG + chr4_3:63502424-63502443 None:intergenic 50.0%
GAAGCTTGACCAGCCTATGG+AGG - chr4_3:63497549-63497568 Msa0655080:CDS 55.0%
TGACCAGCCTATGGAGGAAG+AGG - chr4_3:63497555-63497574 Msa0655080:CDS 55.0%
CTTCCTGCCTCTTCCTCCAT+AGG + chr4_3:63497565-63497584 None:intergenic 55.0%
AGGAAGAGGCAGGAAGACTC+AGG - chr4_3:63497569-63497588 Msa0655080:CDS 55.0%
! GGTGCGATGCTGATTGGGAA+TGG + chr4_3:63498909-63498928 None:intergenic 55.0%
TTACCATGCAGGTGCCAGCA+AGG + chr4_3:63499048-63499067 None:intergenic 55.0%
GCTGGCACCTGCATGGTAAT+CGG - chr4_3:63499049-63499068 Msa0655080:intron 55.0%
CCTGCATGGTAATCGGAGAC+GGG - chr4_3:63499056-63499075 Msa0655080:intron 55.0%
! CAAGGATGGACTTCCCTTGG+TGG - chr4_3:63499614-63499633 Msa0655080:intron 55.0%
GGTCATTGAGCCCTGTGGTA+CGG - chr4_3:63499739-63499758 Msa0655080:CDS 55.0%
TACCCCTGAACCGTACCACA+GGG + chr4_3:63499752-63499771 None:intergenic 55.0%
TTACCCCTGAACCGTACCAC+AGG + chr4_3:63499753-63499772 None:intergenic 55.0%
CCCGTCTCCTAAAAACCGGA+GGG + chr4_3:63500093-63500112 None:intergenic 55.0%
!! CCCTCCGGTTTTTAGGAGAC+GGG - chr4_3:63500090-63500109 Msa0655080:intron 55.0%
TCCCGTCTCCTAAAAACCGG+AGG + chr4_3:63500094-63500113 None:intergenic 55.0%
ATGCTTTCAGGACCAAGGGG+TGG + chr4_3:63500283-63500302 None:intergenic 55.0%
! CAGCAGGGGTGTATGCTTTC+AGG + chr4_3:63500295-63500314 None:intergenic 55.0%
GCAAGCTGTACAGCTGAGAC+CGG + chr4_3:63500444-63500463 None:intergenic 55.0%
CCACATGTGTCTGTGTGTGC+CGG + chr4_3:63500668-63500687 None:intergenic 55.0%
! TGTCGCCTGGCTTGCAACTA+TGG + chr4_3:63500997-63501016 None:intergenic 55.0%
CTTTGCATTGCTGTCACGGC+AGG - chr4_3:63501149-63501168 Msa0655080:intron 55.0%
ATGGCATGGATTCTCGGGCT+TGG - chr4_3:63501566-63501585 Msa0655080:intron 55.0%
CCTTCCTGTTTACACCGTCC+CGG - chr4_3:63501730-63501749 Msa0655080:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG + chr4_3:63501737-63501756 None:intergenic 55.0%
!! CCTCGGTTTGGCCACTTACT+TGG + chr4_3:63502093-63502112 None:intergenic 55.0%
CCAAGTAAGTGGCCAAACCG+AGG - chr4_3:63502090-63502109 Msa0655080:intron 55.0%
CAAGTTCATCGCCCTCGGTT+TGG + chr4_3:63502105-63502124 None:intergenic 55.0%
CTGCCTCTTCCTCCATAGGC+TGG + chr4_3:63497561-63497580 None:intergenic 60.0%
CAGCCTATGGAGGAAGAGGC+AGG - chr4_3:63497559-63497578 Msa0655080:CDS 60.0%
TGTCCTTGCTGGCACCTGCA+TGG - chr4_3:63499042-63499061 Msa0655080:intron 60.0%
CCCGTCTCCGATTACCATGC+AGG + chr4_3:63499059-63499078 None:intergenic 60.0%
CGGAGACGGGATTCTTACCC+CGG - chr4_3:63499069-63499088 Msa0655080:intron 60.0%
GGGTAGGTCATTGAGCCCTG+TGG - chr4_3:63499734-63499753 Msa0655080:CDS 60.0%
TGAGCCCTGTGGTACGGTTC+AGG - chr4_3:63499745-63499764 Msa0655080:CDS 60.0%
GAGCCCTGTGGTACGGTTCA+GGG - chr4_3:63499746-63499765 Msa0655080:CDS 60.0%
AGCCCTGTGGTACGGTTCAG+GGG - chr4_3:63499747-63499766 Msa0655080:CDS 60.0%
TCAGGACCAAGGGGTGGCTA+TGG + chr4_3:63500277-63500296 None:intergenic 60.0%
! TGTGTGCCGGTGTCAGACAC+TGG + chr4_3:63500655-63500674 None:intergenic 60.0%
CCGGCACACACAGACACATG+TGG - chr4_3:63500665-63500684 Msa0655080:intron 60.0%
AACACGGACACCGAGACACC+AGG + chr4_3:63500759-63500778 None:intergenic 60.0%
GGCAGCCATAGTTGCAAGCC+AGG - chr4_3:63500989-63501008 Msa0655080:intron 60.0%
TATTGGTGTGGCGCTGCCAC+TGG - chr4_3:63501354-63501373 Msa0655080:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG + chr4_3:63501733-63501752 None:intergenic 60.0%
AGGTCCTGCGGCCAAGTAAG+TGG - chr4_3:63502079-63502098 Msa0655080:intron 60.0%
TTGGCCACTTACTTGGCCGC+AGG + chr4_3:63502086-63502105 None:intergenic 60.0%
TAACTGCAGGGATGCTGGGG+TGG - chr4_3:63502135-63502154 Msa0655080:intron 60.0%
GGGTAGCCATAGCCACCCCT+TGG - chr4_3:63500268-63500287 Msa0655080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 63496601 63502703 63496601 ID=Msa0655080;Name=Msa0655080
chr4_3 mRNA 63496601 63502703 63496601 ID=Msa0655080-mRNA-1;Parent=Msa0655080;Name=Msa0655080-mRNA-1;_AED=0.27;_eAED=0.27;_QI=374|1|1|1|0.87|0.77|9|373|788
chr4_3 exon 63496601 63498007 63496601 ID=Msa0655080-mRNA-1:exon:17869;Parent=Msa0655080-mRNA-1
chr4_3 exon 63498098 63498352 63498098 ID=Msa0655080-mRNA-1:exon:17868;Parent=Msa0655080-mRNA-1
chr4_3 exon 63498731 63498898 63498731 ID=Msa0655080-mRNA-1:exon:17867;Parent=Msa0655080-mRNA-1
chr4_3 exon 63499648 63499908 63499648 ID=Msa0655080-mRNA-1:exon:17866;Parent=Msa0655080-mRNA-1
chr4_3 exon 63500036 63500086 63500036 ID=Msa0655080-mRNA-1:exon:17865;Parent=Msa0655080-mRNA-1
chr4_3 exon 63500204 63500449 63500204 ID=Msa0655080-mRNA-1:exon:17864;Parent=Msa0655080-mRNA-1
chr4_3 exon 63501196 63501421 63501196 ID=Msa0655080-mRNA-1:exon:17863;Parent=Msa0655080-mRNA-1
chr4_3 exon 63501695 63501869 63501695 ID=Msa0655080-mRNA-1:exon:17862;Parent=Msa0655080-mRNA-1
chr4_3 exon 63502379 63502703 63502379 ID=Msa0655080-mRNA-1:exon:17861;Parent=Msa0655080-mRNA-1
chr4_3 five_prime_UTR 63502379 63502703 63502379 ID=Msa0655080-mRNA-1:five_prime_utr;Parent=Msa0655080-mRNA-1
chr4_3 five_prime_UTR 63501821 63501869 63501821 ID=Msa0655080-mRNA-1:five_prime_utr;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63501695 63501820 63501695 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63501196 63501421 63501196 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63500204 63500449 63500204 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63500036 63500086 63500036 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63499648 63499908 63499648 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63498731 63498898 63498731 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63498098 63498352 63498098 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 CDS 63496974 63498007 63496974 ID=Msa0655080-mRNA-1:cds;Parent=Msa0655080-mRNA-1
chr4_3 three_prime_UTR 63496601 63496973 63496601 ID=Msa0655080-mRNA-1:three_prime_utr;Parent=Msa0655080-mRNA-1
Gene Sequence

>Msa0655080

ATGGCTTCAAGAGTGGACACTGATGAAGAGGGTGATAACAAAGGTAGTATGTGGGATTTGGAACAGAAGCTTGACCAGCCTATGGAGGAAGAGGCAGGAAGACTCAGGAATATGTACAGAGAAAAAAAATTTTCTGCATTGTTGATTCTGCGGCTTGCATATCAGAGTCTTGGCGTCGTTTATGGAGATTTGGGAACTTCACCCTTGTATGTTTTCTACAATATATTTCCGAACGGTGTGAAAGATGAAGAGGAAGTACTTGGAGCTCTTTCTTTGATTATCTACTCTCTTACCTTGGTGCCTCTTCTCAAATATGTTTTTATTGTGTTAAGAGCAAATGACAATGGACAAGGTGGAACATTTGCGCTTTATTCTTTGCTTTGCCGACACGCAAAGATAAAAACCATTCCCAATCAGCATCGCACCGATGAAGAACTAACAACATATAGCCGTTCTACCTTCCATGAAAGGTCATTTGCTGCAAAAACTAAAAGATGGTTGGAGGAACGTGAATCATGGAAGAGTGCCATTCTTATTCTTGTCCTTGCTGGCACCTGCATGGTAATCGGAGACGGGATTCTTACCCCGGCTATATCAGTTTTATCGGCTGTTGGTGGGATTAAGGTAAATCAGCCCCATATGAGTAATGGTGTGGTAGTTCTGATTGCTGTTGTAATATTAGTTGGATTTTTCAGCCTGCAACATTATGGCACAGACAAAGTTAGTTGGCTCTTTGCTCCAATTGTCCTCCTTTGGTTTCTCCTAATAGGAGGTATTGGTATATTTAACATCTGTAAGTATGGAAGCGGAGTTCTAAAAGCCTTTTCTCCTGTTTACATATATCACTATTTTAGAAGAGGTGGAAAACAAGGATGGACTTCCCTTGGTGGTATCATGCTCAGTATAACAGGGACGGAGGCTCTTTTCGCCGACCTATCTCATTTTCCGGTCTCAGCTGTACAGCTTGCATTTACTCTGGTTGTGTTTCCTTGCCTTCTTTTAGCCTATTCTGGACAAGCTGCATACCTTATGAATAACTTGACTCATTCAAAAGATGCTTTTTATCTTTCTATTCCAGAAAGAATATACTGGCCAGTATTTGTTGTTGCAACAGCGGCAGCCATAGTTGCAAGCCAGGCGACAATAACTGCAACATTTTCGATTATTAAGCAAGCCCTTGCTCATGGTTGTTTCCCTAGAGTTAAAGTTGTATATACATCAAAGAAGTTTGCCGGCCAGATATATAGTCCAGATATCAATTGGGTCCTTATGATTCTTTGCATTGCTGTCACGGCAGGGTTCGAAAATCAAAACCAGATTGGAAATGCTTATGGTACTGCAGTGGTGATTGTCTTTCTCGTTACTACATTCCTTATGATTTTAATCATGATATTGGTGTGGCGCTGCCACTGGATTCTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTTAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATCATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAGTTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCTGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTCGTATGCGTCAAATACCTTCCTGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAGAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGATGAATACAGTTTATATGGAGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATGTGAATATCACTGTTAGGTCCTGCGGCCAAGTAAGTGGCCAAACCGAGGGCGATGAACTTGAATTTTTGAATAACTGCAGGGATGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG
Protein sequence

>Msa0655080

MASRVDTDEEGDNKGSMWDLEQKLDQPMEEEAGRLRNMYREKKFSALLILRLAYQSLGVVYGDLGTSPLYVFYNIFPNGVKDEEEVLGALSLIIYSLTLVPLLKYVFIVLRANDNGQGGTFALYSLLCRHAKIKTIPNQHRTDEELTTYSRSTFHERSFAAKTKRWLEERESWKSAILILVLAGTCMVIGDGILTPAISVLSAVGGIKVNQPHMSNGVVVLIAVVILVGFFSLQHYGTDKVSWLFAPIVLLWFLLIGGIGIFNICKYGSGVLKAFSPVYIYHYFRRGGKQGWTSLGGIMLSITGTEALFADLSHFPVSAVQLAFTLVVFPCLLLAYSGQAAYLMNNLTHSKDAFYLSIPERIYWPVFVVATAAAIVASQATITATFSIIKQALAHGCFPRVKVVYTSKKFAGQIYSPDINWVLMILCIAVTAGFENQNQIGNAYGTAVVIVFLVTTFLMILIMILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSDEYSLYGGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNVNITVRSCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*