AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296100 MtrunA17_Chr2g0318521 100.000 264 0 0 1 264 1 264 0.0 538
Msa0296100 MtrunA17_Chr5g0447531 69.288 267 69 6 8 264 2 265 1.08e-125 358
Msa0296100 MtrunA17_Chr4g0051941 68.635 271 68 5 4 263 1 265 1.84e-122 350
Msa0296100 MtrunA17_Chr6g0453181 78.440 218 45 2 46 263 49 264 6.47e-120 343
Msa0296100 MtrunA17_Chr6g0453151 77.523 218 47 2 46 263 116 331 1.61e-119 345
Msa0296100 MtrunA17_Chr6g0453141 77.523 218 47 2 46 263 49 264 6.23e-119 340
Msa0296100 MtrunA17_Chr6g0453161 78.899 218 44 2 46 263 316 531 1.49e-116 344
Msa0296100 MtrunA17_Chr6g0453161 77.523 218 47 2 46 263 51 266 4.40e-115 340
Msa0296100 MtrunA17_Chr6g0464511 63.596 228 47 2 36 263 20 211 2.94e-91 268
Msa0296100 MtrunA17_Chr6g0476641 48.361 244 110 6 14 252 42 274 1.85e-58 187
Msa0296100 MtrunA17_Chr1g0157481 40.230 261 141 4 7 252 62 322 5.86e-58 187
Msa0296100 MtrunA17_Chr6g0453171 72.727 99 26 1 166 264 1 98 3.05e-41 137
Msa0296100 MtrunA17_Chr5g0448421 41.014 217 95 8 59 252 63 269 6.53e-37 131
Msa0296100 MtrunA17_Chr5g0448411 41.014 217 95 9 59 252 61 267 5.04e-36 129
Msa0296100 MtrunA17_Chr8g0345631 34.274 248 124 10 17 248 32 256 3.00e-33 122
Msa0296100 MtrunA17_Chr3g0133901 37.624 202 94 5 63 248 68 253 4.81e-32 119
Msa0296100 MtrunA17_Chr6g0462031 37.557 221 109 9 35 252 39 233 1.06e-30 114
Msa0296100 MtrunA17_Chr2g0301081 35.909 220 97 7 49 248 60 255 1.78e-30 114
Msa0296100 MtrunA17_Chr4g0006181 35.622 233 92 7 60 249 119 336 7.52e-29 112
Msa0296100 MtrunA17_Chr3g0092091 37.255 204 92 7 62 251 62 243 2.01e-27 106
Msa0296100 MtrunA17_Chr3g0113311 41.611 149 72 5 90 238 137 270 4.34e-22 92.4
Msa0296100 MtrunA17_Chr2g0279001 34.615 208 86 7 63 241 73 259 4.43e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296100 AT5G54270.1 87.547 265 32 1 1 264 1 265 2.80e-174 481
Msa0296100 AT2G05070.1 68.421 266 71 6 8 263 2 264 8.70e-124 353
Msa0296100 AT2G05100.1 68.914 267 70 6 8 264 2 265 1.59e-123 352
Msa0296100 AT3G27690.2 67.399 273 75 7 2 263 28 297 4.49e-122 350
Msa0296100 AT3G27690.1 68.401 269 75 6 1 263 1 265 9.03e-122 348
Msa0296100 AT2G34430.1 67.037 270 74 6 4 263 1 265 3.00e-118 339
Msa0296100 AT1G29930.1 65.683 271 77 6 4 263 1 266 3.69e-118 339
Msa0296100 AT1G29920.1 65.683 271 77 6 4 263 1 266 6.25e-118 338
Msa0296100 AT1G29910.1 65.683 271 77 6 4 263 1 266 6.25e-118 338
Msa0296100 AT2G34420.1 66.543 269 73 6 6 263 2 264 1.35e-117 337
Msa0296100 AT2G05100.2 62.030 266 84 7 8 259 2 264 4.98e-103 302
Msa0296100 AT1G76570.1 46.977 215 106 2 46 252 106 320 4.32e-59 191
Msa0296100 AT4G10340.1 49.524 210 97 4 46 252 62 265 5.32e-53 174
Msa0296100 AT1G61520.3 42.857 217 91 9 59 252 59 265 2.46e-39 138
Msa0296100 AT1G61520.1 42.857 217 91 9 59 252 59 265 2.46e-39 138
Msa0296100 AT1G61520.2 42.029 207 87 9 69 252 14 210 5.06e-35 125
Msa0296100 AT3G61470.1 38.140 215 99 10 49 248 50 245 4.47e-34 124
Msa0296100 AT1G45474.2 40.206 194 101 4 63 248 56 242 3.91e-33 121
Msa0296100 AT1G45474.1 40.206 194 101 4 63 248 56 242 3.91e-33 121
Msa0296100 AT3G08940.2 35.622 233 92 7 60 249 59 276 6.88e-31 116
Msa0296100 AT3G54890.1 40.206 194 96 8 63 252 55 232 2.10e-30 114
Msa0296100 AT1G19150.1 35.111 225 100 8 49 252 63 262 2.82e-28 109
Msa0296100 AT3G47470.1 37.255 204 92 6 62 251 63 244 1.97e-27 106
Msa0296100 AT5G01530.1 34.322 236 97 7 60 252 62 282 2.17e-27 107
Msa0296100 AT1G15820.1 35.096 208 85 7 63 241 70 256 3.82e-21 90.1
Msa0296100 AT2G40100.1 41.447 152 73 5 90 241 136 271 8.59e-21 89.4
Msa0296100 AT3G54890.4 37.975 158 79 7 63 217 55 196 1.67e-19 84.7
Msa0296100 AT5G28450.1 48.718 78 36 2 172 248 87 161 1.38e-14 70.5

Find 120 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGTGGTCTTGACTATTT+AGG 0.130970 2_3:-48956329 Msa0296100:CDS
ATTATGATCTTAATGATTAT+TGG 0.165795 2_3:-48955882 Msa0296100:three_prime_UTR
CTGTTCTTGGCAAATGCTTC+TGG 0.168930 2_3:+48956657 None:intergenic
GTTCTTTGTGTGCTGTTTAT+AGG 0.174654 2_3:+48955667 None:intergenic
TTCTTTGTGTGCTGTTTATA+GGG 0.257510 2_3:+48955668 None:intergenic
GGCATAAACCCAGGCATTAT+TGG 0.260488 2_3:+48955992 None:intergenic
AGGACCTTTGGAGAATCTTT+TGG 0.271440 2_3:-48956036 Msa0296100:CDS
GGAGAATTCCCTGGTGATTA+TGG 0.284769 2_3:-48956708 Msa0296100:CDS
ACCAGACAGAGTGAAATATT+TGG 0.293839 2_3:-48956766 Msa0296100:CDS
TATTTATATGACTTCCTTGT+TGG 0.307231 2_3:+48955769 None:intergenic
TGGAGTATGCATGGGGTTCT+AGG 0.317798 2_3:-48955442 Msa0296100:three_prime_UTR
AGGTTTCCAAGTTGTTCTAA+TGG 0.320920 2_3:-48956264 Msa0296100:CDS
CCAGACAGAGTGAAATATTT+GGG 0.332386 2_3:-48956765 Msa0296100:CDS
AACCTCAAGAGCCCTGTTCT+TGG 0.335763 2_3:+48956644 None:intergenic
AAGGTGGTCTTGACTATTTA+GGG 0.341687 2_3:-48956328 Msa0296100:CDS
TTAAGCTCAGCGAAAGTAAC+TGG 0.345168 2_3:+48956137 None:intergenic
CTTTGTGCATGAACAAGGTT+TGG 0.349100 2_3:+48956302 None:intergenic
TTCCGCATCAACGGTCTTCC+TGG 0.355033 2_3:-48956227 Msa0296100:CDS
GGTTTCCAAGTTGTTCTAAT+GGG 0.357946 2_3:-48956263 Msa0296100:CDS
ACCCAGGCATTATTGGCAAC+AGG 0.364495 2_3:+48955999 None:intergenic
CCCAAATATTTCACTCTGTC+TGG 0.371437 2_3:+48956765 None:intergenic
CAGAAGCATTTGCCAAGAAC+AGG 0.372548 2_3:-48956656 Msa0296100:CDS
TGTCACTGGTAAAGGACCTT+TGG 0.380892 2_3:-48956048 Msa0296100:CDS
CAGACTCCTTCATACTTAAC+TGG 0.384985 2_3:-48956729 Msa0296100:CDS
TTGACTTCAAAGAACCAGTT+TGG 0.402631 2_3:-48956379 Msa0296100:CDS
GGCCAATACTTTGACCCTCT+TGG 0.405341 2_3:-48956173 Msa0296100:CDS
GAAGGAGTCTGAGCTGAAAA+TGG 0.411828 2_3:+48956741 None:intergenic
CAAAGCATCTTAGCAGTACT+AGG 0.430115 2_3:-48956284 Msa0296100:CDS
CAAGCTATTGTCACTGGTAA+AGG 0.430252 2_3:-48956056 Msa0296100:CDS
GGAACAAATCATGGCATTGA+TGG 0.432925 2_3:-48957521 Msa0296100:exon
TGACTTCCTTGTTGGTTGGT+TGG 0.435541 2_3:+48955777 None:intergenic
GGAAATCAAGAATGGAAGAT+TGG 0.436306 2_3:-48956108 Msa0296100:CDS
TAATTGAACTACTTTACCGT+TGG 0.440174 2_3:-48955552 Msa0296100:three_prime_UTR
GATCCTGCTTTGAACCAAAC+TGG 0.441392 2_3:+48956365 None:intergenic
TATGCCACCAAGTTTGTGCC+TGG 0.443893 2_3:-48955975 Msa0296100:CDS
GTTAAACAAACTCCTTTCCT+TGG 0.446741 2_3:-48957478 Msa0296100:CDS
TCAGTTATTTGAGTGAACTA+AGG 0.450678 2_3:-48957570 Msa0296100:five_prime_UTR
ACAAGAAGCACTTGAAAGCT+TGG 0.451758 2_3:-48957542 Msa0296100:five_prime_UTR
TGAAGGTGATCCATGGAAGA+TGG 0.451873 2_3:-48956460 Msa0296100:intron
TGGTCTAGTAGCGAGGAGTT+TGG 0.455939 2_3:-48955462 Msa0296100:three_prime_UTR
ACCCTGTTGCCAATAATGCC+TGG 0.466859 2_3:-48956001 Msa0296100:CDS
TTTGTTCAAGCTATTGTCAC+TGG 0.469594 2_3:-48956062 Msa0296100:CDS
GGGAACCTCAAGATTCACTA+TGG 0.472897 2_3:-48957410 Msa0296100:intron
GTTCTAATGGGTCTTGTCGA+AGG 0.474424 2_3:-48956251 Msa0296100:CDS
CCCTGTTGCCAATAATGCCT+GGG 0.476932 2_3:-48956000 Msa0296100:CDS
TGAAAGCTTGGAACAAATCA+TGG 0.486782 2_3:-48957530 Msa0296100:exon
GGGTCAAAGTATTGGCCACC+AGG 0.488607 2_3:+48956179 None:intergenic
GACCAAGAGGGTCAAAGTAT+TGG 0.490473 2_3:+48956171 None:intergenic
TCCTTTCCTTGGTCAAAGGA+AGG 0.490595 2_3:-48957467 Msa0296100:CDS
AATTGAACTACTTTACCGTT+GGG 0.492289 2_3:-48955551 Msa0296100:three_prime_UTR
TATATGACTTCCTTGTTGGT+TGG 0.496487 2_3:+48955773 None:intergenic
AGTATTGGCCACCAGGGTAA+AGG 0.501836 2_3:+48956186 None:intergenic
TTCTAATGGGTCTTGTCGAA+GGG 0.505605 2_3:-48956250 Msa0296100:CDS
CGAGGAGTTTGGAGTATGCA+TGG 0.508926 2_3:-48955451 Msa0296100:three_prime_UTR
TTTGTGCATGAACAAGGTTT+GGG 0.509110 2_3:+48956303 None:intergenic
CAAGACCCATTAGAACAACT+TGG 0.511234 2_3:+48956258 None:intergenic
AAACTCCTTTCCTTGGTCAA+AGG 0.511273 2_3:-48957471 Msa0296100:CDS
GTATGCAAAGCCGCTAGGAT+TGG 0.511784 2_3:-48955482 Msa0296100:three_prime_UTR
CAGCACCCTTCCTTTGACCA+AGG 0.515079 2_3:+48957461 None:intergenic
TGCCAAGAACAGGGCTCTTG+AGG 0.515098 2_3:-48956646 Msa0296100:intron
TTTCGCTGAGCTTAAAGTGA+AGG 0.516818 2_3:-48956129 Msa0296100:CDS
TTAAGAACCAGGCACAAACT+TGG 0.519988 2_3:+48955968 None:intergenic
CTAGCATAGCCCATCTTCCA+TGG 0.521302 2_3:+48956450 None:intergenic
GTCGAAGGGTTCCGCATCAA+CGG 0.526007 2_3:-48956236 Msa0296100:CDS
TATCTATGATTGCCTTTGTG+TGG 0.526299 2_3:-48955935 Msa0296100:three_prime_UTR
AATTCCCTGGTGATTATGGA+TGG 0.526464 2_3:-48956704 Msa0296100:CDS
GAACCAGTTTGGTTCAAAGC+AGG 0.531298 2_3:-48956368 Msa0296100:CDS
CTTAGAGATGTTGTCGCCAT+GGG 0.532010 2_3:-48957430 Msa0296100:CDS
TACTTAACTGGAGAATTCCC+TGG 0.533200 2_3:-48956717 Msa0296100:CDS
GAAGGTGATCCATGGAAGAT+GGG 0.534211 2_3:-48956459 Msa0296100:intron
ATGGCGACAACATCTCTAAG+AGG 0.535432 2_3:+48957433 None:intergenic
TTGTTGCCCTCTCCGACACC+AGG 0.535866 2_3:+48956209 None:intergenic
CACAAATAGTATTTATGCAA+TGG 0.536762 2_3:+48955722 None:intergenic
GATTATGGATGGGACACTGC+TGG 0.539551 2_3:-48956693 Msa0296100:CDS
GAGGAGTTTGGAGTATGCAT+GGG 0.544157 2_3:-48955450 Msa0296100:three_prime_UTR
AAAGTGAAGGAAATCAAGAA+TGG 0.545234 2_3:-48956116 Msa0296100:CDS
GGTCTTCCTGGTGTCGGAGA+GGG 0.548663 2_3:-48956215 Msa0296100:CDS
AGATGCTTTGTGCATGAACA+AGG 0.550454 2_3:+48956297 None:intergenic
TCTTAGAGATGTTGTCGCCA+TGG 0.551003 2_3:-48957431 Msa0296100:CDS
CATGGAAGATGGGCTATGCT+AGG 0.554415 2_3:-48956449 Msa0296100:CDS
AACATTGATGTTTAAGAACC+AGG 0.556979 2_3:+48955957 None:intergenic
AATTCTCCAGTTAAGTATGA+AGG 0.558241 2_3:+48956723 None:intergenic
GTGTCCCATCCATAATCACC+AGG 0.560079 2_3:+48956699 None:intergenic
CCTTTCCTTGGTCAAAGGAA+GGG 0.568157 2_3:-48957466 Msa0296100:CDS
TGGGCTATGCTAGGAGCACT+CGG 0.571623 2_3:-48956440 Msa0296100:CDS
GACAACATCTCTAAGAGGGT+TGG 0.572370 2_3:+48957438 None:intergenic
CGGTCTTCCTGGTGTCGGAG+AGG 0.575168 2_3:-48956216 Msa0296100:CDS
ATCAACGGTCTTCCTGGTGT+CGG 0.580505 2_3:-48956221 Msa0296100:CDS
AGCGAAAGTAACTGGATCGT+CGG 0.584697 2_3:+48956145 None:intergenic
CCCAGGCATTATTGGCAACA+GGG 0.587322 2_3:+48956000 None:intergenic
AAGGGAAATGAATTGTGGTA+TGG 0.602138 2_3:-48956789 Msa0296100:CDS
AGAACCAGGCACAAACTTGG+TGG 0.606113 2_3:+48955971 None:intergenic
AGTGAATCTTGAGGTTCCCA+TGG 0.607906 2_3:+48957414 None:intergenic
CCCTTCCTTTGACCAAGGAA+AGG 0.609595 2_3:+48957466 None:intergenic
GGATCACAAATCTTCTCAGA+AGG 0.611974 2_3:-48956347 Msa0296100:CDS
CACCAGGAAGACCGTTGATG+CGG 0.612040 2_3:+48956225 None:intergenic
AGAGTGTATGCAAAGCCGCT+AGG 0.615793 2_3:-48955487 Msa0296100:three_prime_UTR
TCACAAATCTTCTCAGAAGG+TGG 0.617687 2_3:-48956344 Msa0296100:CDS
ATTCCCTGGTGATTATGGAT+GGG 0.621810 2_3:-48956703 Msa0296100:CDS
GTAATTGTCATAACACCCAA+CGG 0.622376 2_3:+48955536 None:intergenic
AGAAGCATTTGCCAAGAACA+GGG 0.625251 2_3:-48956655 Msa0296100:CDS
TGGCGACAACATCTCTAAGA+GGG 0.635101 2_3:+48957434 None:intergenic
TTGTGAAGGGAAATGAATTG+TGG 0.635151 2_3:-48956794 Msa0296100:intron
TTTAAACCAACCAACCAACA+AGG 0.640572 2_3:-48955783 Msa0296100:three_prime_UTR
GGATCGTCGGCTAGACCAAG+AGG 0.652317 2_3:+48956158 None:intergenic
GGTCAAAGTATTGGCCACCA+GGG 0.653321 2_3:+48956180 None:intergenic
TGATCCAAAAGATTCTCCAA+AGG 0.654984 2_3:+48956032 None:intergenic
AGGAGTTTGGAGTATGCATG+GGG 0.658617 2_3:-48955449 Msa0296100:three_prime_UTR
AAACTTGGTGGCATAAACCC+AGG 0.664430 2_3:+48955983 None:intergenic
AAATACCATAGTGAATCTTG+AGG 0.669239 2_3:+48957405 None:intergenic
TCTAATCATCATCCACACAA+AGG 0.671776 2_3:+48955923 None:intergenic
CTAGGATTGGTCTAGTAGCG+AGG 0.674495 2_3:-48955469 Msa0296100:three_prime_UTR
GAGGGCAACAACCTTTACCC+TGG 0.674842 2_3:-48956197 Msa0296100:CDS
GATCGTCGGCTAGACCAAGA+GGG 0.686043 2_3:+48956159 None:intergenic
GGCAACAACCTTTACCCTGG+TGG 0.691666 2_3:-48956194 Msa0296100:CDS
TAACTGATACTAGAAATGTG+TGG 0.703886 2_3:+48957586 None:intergenic
GTGTGGATGATGATTAGACA+TGG 0.706158 2_3:-48955918 Msa0296100:three_prime_UTR
CGCTACTAGACCAATCCTAG+CGG 0.715987 2_3:+48955472 None:intergenic
CAGACAGAGTGAAATATTTG+GGG 0.720681 2_3:-48956764 Msa0296100:CDS
TGTCCCATCCATAATCACCA+GGG 0.728458 2_3:+48956700 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTTACTAAAAAAAT+AGG + chr2_3:48955650-48955669 None:intergenic 10.0%
!! AAAAATTTCACTATATTTAT+AGG - chr2_3:48955661-48955680 Msa0296100:three_prime_UTR 10.0%
!! TTAATTATTAGATACAATAT+TGG + chr2_3:48955752-48955771 None:intergenic 10.0%
!!! AATCATACTTTTTTTTTTTA+GGG + chr2_3:48955793-48955812 None:intergenic 10.0%
!!! AAATCATACTTTTTTTTTTT+AGG + chr2_3:48955794-48955813 None:intergenic 10.0%
!!! GAAATTTTTACTAAAAAAAT+AGG + chr2_3:48955650-48955669 None:intergenic 10.0%
!! AAAAATTTCACTATATTTAT+AGG - chr2_3:48955661-48955680 Msa0296100:three_prime_UTR 10.0%
!! TTAATTATTAGATACAATAT+TGG + chr2_3:48955752-48955771 None:intergenic 10.0%
!!! AATCATACTTTTTTTTTTTA+GGG + chr2_3:48955793-48955812 None:intergenic 10.0%
!!! AAATCATACTTTTTTTTTTT+AGG + chr2_3:48955794-48955813 None:intergenic 10.0%
!! TTAGAAAAAAAACATAAGAA+TGG + chr2_3:48956448-48956467 None:intergenic 15.0%
!!! TAGAATGTTAACAAAATTTT+TGG + chr2_3:48956483-48956502 None:intergenic 15.0%
!! ACATAACTTAATATCTTTAT+CGG + chr2_3:48956533-48956552 None:intergenic 15.0%
!! ATTATGATCTTAATGATTAT+TGG - chr2_3:48957138-48957157 Msa0296100:intron 15.0%
!! TTAGAAAAAAAACATAAGAA+TGG + chr2_3:48956448-48956467 None:intergenic 15.0%
!!! TAGAATGTTAACAAAATTTT+TGG + chr2_3:48956483-48956502 None:intergenic 15.0%
!! ACATAACTTAATATCTTTAT+CGG + chr2_3:48956533-48956552 None:intergenic 15.0%
!! ATTATGATCTTAATGATTAT+TGG - chr2_3:48957138-48957157 Msa0296100:intron 15.0%
!!! CAAGTATGTTTTTTTATCAT+TGG - chr2_3:48955859-48955878 Msa0296100:three_prime_UTR 20.0%
!!! ACGTTTAGATATGTTTTTAT+TGG - chr2_3:48956103-48956122 Msa0296100:CDS 20.0%
!!! TAAGTTATGTTGAATTTTGA+AGG - chr2_3:48956543-48956562 Msa0296100:intron 20.0%
!!! CAAGTATGTTTTTTTATCAT+TGG - chr2_3:48955859-48955878 Msa0296100:three_prime_UTR 20.0%
!!! ACGTTTAGATATGTTTTTAT+TGG - chr2_3:48956103-48956122 Msa0296100:CDS 20.0%
!!! TAAGTTATGTTGAATTTTGA+AGG - chr2_3:48956543-48956562 Msa0296100:intron 20.0%
! ACTAAAAAAATAGGGAAAAG+AGG + chr2_3:48955641-48955660 None:intergenic 25.0%
! TAAAAAAACATACTTGTGCA+TGG + chr2_3:48955855-48955874 None:intergenic 25.0%
! CTAACAAAGTATATGCTTTA+TGG + chr2_3:48955989-48956008 None:intergenic 25.0%
!!! TTTATATAGTGTTGCTTATG+TGG - chr2_3:48956179-48956198 Msa0296100:CDS 25.0%
!!! TGGATTAGTATATCTGTTTT+TGG - chr2_3:48957158-48957177 Msa0296100:intron 25.0%
!!! ATATCTGTTTTTGGTTCTTA+AGG - chr2_3:48957167-48957186 Msa0296100:intron 25.0%
!!! TATCTGTTTTTGGTTCTTAA+GGG - chr2_3:48957168-48957187 Msa0296100:intron 25.0%
!!! GCTAATGTTCATTTTAAAGA+TGG - chr2_3:48957190-48957209 Msa0296100:intron 25.0%
! TATTTATATGACTTCCTTGT+TGG + chr2_3:48957254-48957273 None:intergenic 25.0%
! CACAAATAGTATTTATGCAA+TGG + chr2_3:48957301-48957320 None:intergenic 25.0%
! ACTAAAAAAATAGGGAAAAG+AGG + chr2_3:48955641-48955660 None:intergenic 25.0%
! TAAAAAAACATACTTGTGCA+TGG + chr2_3:48955855-48955874 None:intergenic 25.0%
! CTAACAAAGTATATGCTTTA+TGG + chr2_3:48955989-48956008 None:intergenic 25.0%
!!! TTTATATAGTGTTGCTTATG+TGG - chr2_3:48956179-48956198 Msa0296100:CDS 25.0%
!!! TGGATTAGTATATCTGTTTT+TGG - chr2_3:48957158-48957177 Msa0296100:intron 25.0%
!!! ATATCTGTTTTTGGTTCTTA+AGG - chr2_3:48957167-48957186 Msa0296100:intron 25.0%
!!! TATCTGTTTTTGGTTCTTAA+GGG - chr2_3:48957168-48957187 Msa0296100:intron 25.0%
!!! GCTAATGTTCATTTTAAAGA+TGG - chr2_3:48957190-48957209 Msa0296100:intron 25.0%
! TATTTATATGACTTCCTTGT+TGG + chr2_3:48957254-48957273 None:intergenic 25.0%
! CACAAATAGTATTTATGCAA+TGG + chr2_3:48957301-48957320 None:intergenic 25.0%
TCAGTTATTTGAGTGAACTA+AGG - chr2_3:48955450-48955469 Msa0296100:three_prime_UTR 30.0%
AAATACCATAGTGAATCTTG+AGG + chr2_3:48955618-48955637 None:intergenic 30.0%
TTAGTAGCATCACACATTTA+AGG + chr2_3:48955706-48955725 None:intergenic 30.0%
AAATGTGTGATGCTACTAAT+TGG - chr2_3:48955707-48955726 Msa0296100:three_prime_UTR 30.0%
TTTGTTTCGCACCATATAAT+TGG - chr2_3:48955963-48955982 Msa0296100:exon 30.0%
ATGCTTTATGGCCAATTATA+TGG + chr2_3:48955977-48955996 None:intergenic 30.0%
TAACTAATGATAGACACGTT+CGG - chr2_3:48956059-48956078 Msa0296100:CDS 30.0%
ATTGTGTTTGTGATTGTGAA+GGG - chr2_3:48956213-48956232 Msa0296100:CDS 30.0%
AATTCTCCAGTTAAGTATGA+AGG + chr2_3:48956300-48956319 None:intergenic 30.0%
TTAAAAATGCTCCAAAACCA+TGG - chr2_3:48956410-48956429 Msa0296100:CDS 30.0%
! ATGAGAAAAAACCATGGTTT+TGG + chr2_3:48956424-48956443 None:intergenic 30.0%
AATGGAATGAGAAAAAACCA+TGG + chr2_3:48956430-48956449 None:intergenic 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG - chr2_3:48956612-48956631 Msa0296100:intron 30.0%
AAAGTGAAGGAAATCAAGAA+TGG - chr2_3:48956904-48956923 Msa0296100:intron 30.0%
AACATTGATGTTTAAGAACC+AGG + chr2_3:48957066-48957085 None:intergenic 30.0%
!! TTCTTTGTGTGCTGTTTATA+GGG + chr2_3:48957355-48957374 None:intergenic 30.0%
TAATTGAACTACTTTACCGT+TGG - chr2_3:48957468-48957487 Msa0296100:CDS 30.0%
AATTGAACTACTTTACCGTT+GGG - chr2_3:48957469-48957488 Msa0296100:CDS 30.0%
TCAGTTATTTGAGTGAACTA+AGG - chr2_3:48955450-48955469 Msa0296100:three_prime_UTR 30.0%
AAATACCATAGTGAATCTTG+AGG + chr2_3:48955618-48955637 None:intergenic 30.0%
TTAGTAGCATCACACATTTA+AGG + chr2_3:48955706-48955725 None:intergenic 30.0%
AAATGTGTGATGCTACTAAT+TGG - chr2_3:48955707-48955726 Msa0296100:three_prime_UTR 30.0%
TTTGTTTCGCACCATATAAT+TGG - chr2_3:48955963-48955982 Msa0296100:exon 30.0%
ATGCTTTATGGCCAATTATA+TGG + chr2_3:48955977-48955996 None:intergenic 30.0%
TAACTAATGATAGACACGTT+CGG - chr2_3:48956059-48956078 Msa0296100:CDS 30.0%
ATTGTGTTTGTGATTGTGAA+GGG - chr2_3:48956213-48956232 Msa0296100:CDS 30.0%
AATTCTCCAGTTAAGTATGA+AGG + chr2_3:48956300-48956319 None:intergenic 30.0%
TTAAAAATGCTCCAAAACCA+TGG - chr2_3:48956410-48956429 Msa0296100:CDS 30.0%
! ATGAGAAAAAACCATGGTTT+TGG + chr2_3:48956424-48956443 None:intergenic 30.0%
AATGGAATGAGAAAAAACCA+TGG + chr2_3:48956430-48956449 None:intergenic 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG - chr2_3:48956612-48956631 Msa0296100:intron 30.0%
AAAGTGAAGGAAATCAAGAA+TGG - chr2_3:48956904-48956923 Msa0296100:intron 30.0%
AACATTGATGTTTAAGAACC+AGG + chr2_3:48957066-48957085 None:intergenic 30.0%
!! TTCTTTGTGTGCTGTTTATA+GGG + chr2_3:48957355-48957374 None:intergenic 30.0%
TAATTGAACTACTTTACCGT+TGG - chr2_3:48957468-48957487 Msa0296100:CDS 30.0%
AATTGAACTACTTTACCGTT+GGG - chr2_3:48957469-48957488 Msa0296100:CDS 30.0%
TGAAAGCTTGGAACAAATCA+TGG - chr2_3:48955490-48955509 Msa0296100:three_prime_UTR 35.0%
GTTAAACAAACTCCTTTCCT+TGG - chr2_3:48955542-48955561 Msa0296100:three_prime_UTR 35.0%
AACTAATGATAGACACGTTC+GGG - chr2_3:48956060-48956079 Msa0296100:CDS 35.0%
CATTGTGTTTGTGATTGTGA+AGG - chr2_3:48956212-48956231 Msa0296100:CDS 35.0%
TTGTGAAGGGAAATGAATTG+TGG - chr2_3:48956226-48956245 Msa0296100:CDS 35.0%
AAGGGAAATGAATTGTGGTA+TGG - chr2_3:48956231-48956250 Msa0296100:CDS 35.0%
ACCAGACAGAGTGAAATATT+TGG - chr2_3:48956254-48956273 Msa0296100:CDS 35.0%
CCAGACAGAGTGAAATATTT+GGG - chr2_3:48956255-48956274 Msa0296100:CDS 35.0%
CAGACAGAGTGAAATATTTG+GGG - chr2_3:48956256-48956275 Msa0296100:CDS 35.0%
!! TGAATTTTGAAGGTGATCCA+TGG - chr2_3:48956553-48956572 Msa0296100:intron 35.0%
! CACCTGAAGTACTTGAAAAA+TGG - chr2_3:48956611-48956630 Msa0296100:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG + chr2_3:48956616-48956635 None:intergenic 35.0%
TTGACTTCAAAGAACCAGTT+TGG - chr2_3:48956641-48956660 Msa0296100:intron 35.0%
! AAGGTGGTCTTGACTATTTA+GGG - chr2_3:48956692-48956711 Msa0296100:CDS 35.0%
TTTGTGCATGAACAAGGTTT+GGG + chr2_3:48956720-48956739 None:intergenic 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG - chr2_3:48956756-48956775 Msa0296100:CDS 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG - chr2_3:48956757-48956776 Msa0296100:CDS 35.0%
GGAAATCAAGAATGGAAGAT+TGG - chr2_3:48956912-48956931 Msa0296100:intron 35.0%
! TTGGCTATGTTTTCGATGTT+TGG - chr2_3:48956931-48956950 Msa0296100:intron 35.0%
TTTGTTCAAGCTATTGTCAC+TGG - chr2_3:48956958-48956977 Msa0296100:intron 35.0%
TGATCCAAAAGATTCTCCAA+AGG + chr2_3:48956991-48957010 None:intergenic 35.0%
TATCTATGATTGCCTTTGTG+TGG - chr2_3:48957085-48957104 Msa0296100:intron 35.0%
TCTAATCATCATCCACACAA+AGG + chr2_3:48957100-48957119 None:intergenic 35.0%
TTTAAACCAACCAACCAACA+AGG - chr2_3:48957237-48957256 Msa0296100:intron 35.0%
TATATGACTTCCTTGTTGGT+TGG + chr2_3:48957250-48957269 None:intergenic 35.0%
!! GTTCTTTGTGTGCTGTTTAT+AGG + chr2_3:48957356-48957375 None:intergenic 35.0%
GTAATTGTCATAACACCCAA+CGG + chr2_3:48957487-48957506 None:intergenic 35.0%
TGAAAGCTTGGAACAAATCA+TGG - chr2_3:48955490-48955509 Msa0296100:three_prime_UTR 35.0%
GTTAAACAAACTCCTTTCCT+TGG - chr2_3:48955542-48955561 Msa0296100:three_prime_UTR 35.0%
AACTAATGATAGACACGTTC+GGG - chr2_3:48956060-48956079 Msa0296100:CDS 35.0%
CATTGTGTTTGTGATTGTGA+AGG - chr2_3:48956212-48956231 Msa0296100:CDS 35.0%
TTGTGAAGGGAAATGAATTG+TGG - chr2_3:48956226-48956245 Msa0296100:CDS 35.0%
AAGGGAAATGAATTGTGGTA+TGG - chr2_3:48956231-48956250 Msa0296100:CDS 35.0%
ACCAGACAGAGTGAAATATT+TGG - chr2_3:48956254-48956273 Msa0296100:CDS 35.0%
CCAGACAGAGTGAAATATTT+GGG - chr2_3:48956255-48956274 Msa0296100:CDS 35.0%
CAGACAGAGTGAAATATTTG+GGG - chr2_3:48956256-48956275 Msa0296100:CDS 35.0%
!! TGAATTTTGAAGGTGATCCA+TGG - chr2_3:48956553-48956572 Msa0296100:intron 35.0%
! CACCTGAAGTACTTGAAAAA+TGG - chr2_3:48956611-48956630 Msa0296100:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG + chr2_3:48956616-48956635 None:intergenic 35.0%
TTGACTTCAAAGAACCAGTT+TGG - chr2_3:48956641-48956660 Msa0296100:intron 35.0%
! AAGGTGGTCTTGACTATTTA+GGG - chr2_3:48956692-48956711 Msa0296100:CDS 35.0%
TTTGTGCATGAACAAGGTTT+GGG + chr2_3:48956720-48956739 None:intergenic 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG - chr2_3:48956756-48956775 Msa0296100:CDS 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG - chr2_3:48956757-48956776 Msa0296100:CDS 35.0%
GGAAATCAAGAATGGAAGAT+TGG - chr2_3:48956912-48956931 Msa0296100:intron 35.0%
! TTGGCTATGTTTTCGATGTT+TGG - chr2_3:48956931-48956950 Msa0296100:intron 35.0%
TTTGTTCAAGCTATTGTCAC+TGG - chr2_3:48956958-48956977 Msa0296100:intron 35.0%
TGATCCAAAAGATTCTCCAA+AGG + chr2_3:48956991-48957010 None:intergenic 35.0%
TATCTATGATTGCCTTTGTG+TGG - chr2_3:48957085-48957104 Msa0296100:intron 35.0%
TCTAATCATCATCCACACAA+AGG + chr2_3:48957100-48957119 None:intergenic 35.0%
TTTAAACCAACCAACCAACA+AGG - chr2_3:48957237-48957256 Msa0296100:intron 35.0%
TATATGACTTCCTTGTTGGT+TGG + chr2_3:48957250-48957269 None:intergenic 35.0%
!! GTTCTTTGTGTGCTGTTTAT+AGG + chr2_3:48957356-48957375 None:intergenic 35.0%
GTAATTGTCATAACACCCAA+CGG + chr2_3:48957487-48957506 None:intergenic 35.0%
!! ACAAGAAGCACTTGAAAGCT+TGG - chr2_3:48955478-48955497 Msa0296100:three_prime_UTR 40.0%
! GGAACAAATCATGGCATTGA+TGG - chr2_3:48955499-48955518 Msa0296100:three_prime_UTR 40.0%
AAACTCCTTTCCTTGGTCAA+AGG - chr2_3:48955549-48955568 Msa0296100:three_prime_UTR 40.0%
CCCAAATATTTCACTCTGTC+TGG + chr2_3:48956258-48956277 None:intergenic 40.0%
CAGACTCCTTCATACTTAAC+TGG - chr2_3:48956291-48956310 Msa0296100:CDS 40.0%
TACTTAACTGGAGAATTCCC+TGG - chr2_3:48956303-48956322 Msa0296100:CDS 40.0%
AATTCCCTGGTGATTATGGA+TGG - chr2_3:48956316-48956335 Msa0296100:CDS 40.0%
ATTCCCTGGTGATTATGGAT+GGG - chr2_3:48956317-48956336 Msa0296100:CDS 40.0%
!! AGAAGCATTTGCCAAGAACA+GGG - chr2_3:48956365-48956384 Msa0296100:CDS 40.0%
GGATCACAAATCTTCTCAGA+AGG - chr2_3:48956673-48956692 Msa0296100:CDS 40.0%
TCACAAATCTTCTCAGAAGG+TGG - chr2_3:48956676-48956695 Msa0296100:CDS 40.0%
! GAAGGTGGTCTTGACTATTT+AGG - chr2_3:48956691-48956710 Msa0296100:CDS 40.0%
CTTTGTGCATGAACAAGGTT+TGG + chr2_3:48956721-48956740 None:intergenic 40.0%
AGATGCTTTGTGCATGAACA+AGG + chr2_3:48956726-48956745 None:intergenic 40.0%
! CAAAGCATCTTAGCAGTACT+AGG - chr2_3:48956736-48956755 Msa0296100:CDS 40.0%
CAAGACCCATTAGAACAACT+TGG + chr2_3:48956765-48956784 None:intergenic 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG - chr2_3:48956770-48956789 Msa0296100:CDS 40.0%
TTAAGCTCAGCGAAAGTAAC+TGG + chr2_3:48956886-48956905 None:intergenic 40.0%
TTTCGCTGAGCTTAAAGTGA+AGG - chr2_3:48956891-48956910 Msa0296100:intron 40.0%
CAAGCTATTGTCACTGGTAA+AGG - chr2_3:48956964-48956983 Msa0296100:intron 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG - chr2_3:48956984-48957003 Msa0296100:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG + chr2_3:48957055-48957074 None:intergenic 40.0%
GTGTGGATGATGATTAGACA+TGG - chr2_3:48957102-48957121 Msa0296100:intron 40.0%
!! ACAAGAAGCACTTGAAAGCT+TGG - chr2_3:48955478-48955497 Msa0296100:three_prime_UTR 40.0%
! GGAACAAATCATGGCATTGA+TGG - chr2_3:48955499-48955518 Msa0296100:three_prime_UTR 40.0%
AAACTCCTTTCCTTGGTCAA+AGG - chr2_3:48955549-48955568 Msa0296100:three_prime_UTR 40.0%
CCCAAATATTTCACTCTGTC+TGG + chr2_3:48956258-48956277 None:intergenic 40.0%
CAGACTCCTTCATACTTAAC+TGG - chr2_3:48956291-48956310 Msa0296100:CDS 40.0%
TACTTAACTGGAGAATTCCC+TGG - chr2_3:48956303-48956322 Msa0296100:CDS 40.0%
AATTCCCTGGTGATTATGGA+TGG - chr2_3:48956316-48956335 Msa0296100:CDS 40.0%
ATTCCCTGGTGATTATGGAT+GGG - chr2_3:48956317-48956336 Msa0296100:CDS 40.0%
!! AGAAGCATTTGCCAAGAACA+GGG - chr2_3:48956365-48956384 Msa0296100:CDS 40.0%
GGATCACAAATCTTCTCAGA+AGG - chr2_3:48956673-48956692 Msa0296100:CDS 40.0%
TCACAAATCTTCTCAGAAGG+TGG - chr2_3:48956676-48956695 Msa0296100:CDS 40.0%
! GAAGGTGGTCTTGACTATTT+AGG - chr2_3:48956691-48956710 Msa0296100:CDS 40.0%
CTTTGTGCATGAACAAGGTT+TGG + chr2_3:48956721-48956740 None:intergenic 40.0%
AGATGCTTTGTGCATGAACA+AGG + chr2_3:48956726-48956745 None:intergenic 40.0%
! CAAAGCATCTTAGCAGTACT+AGG - chr2_3:48956736-48956755 Msa0296100:CDS 40.0%
CAAGACCCATTAGAACAACT+TGG + chr2_3:48956765-48956784 None:intergenic 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG - chr2_3:48956770-48956789 Msa0296100:CDS 40.0%
TTAAGCTCAGCGAAAGTAAC+TGG + chr2_3:48956886-48956905 None:intergenic 40.0%
TTTCGCTGAGCTTAAAGTGA+AGG - chr2_3:48956891-48956910 Msa0296100:intron 40.0%
CAAGCTATTGTCACTGGTAA+AGG - chr2_3:48956964-48956983 Msa0296100:intron 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG - chr2_3:48956984-48957003 Msa0296100:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG + chr2_3:48957055-48957074 None:intergenic 40.0%
GTGTGGATGATGATTAGACA+TGG - chr2_3:48957102-48957121 Msa0296100:intron 40.0%
TCCTTTCCTTGGTCAAAGGA+AGG - chr2_3:48955553-48955572 Msa0296100:three_prime_UTR 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG - chr2_3:48955554-48955573 Msa0296100:three_prime_UTR 45.0%
! GACAACATCTCTAAGAGGGT+TGG + chr2_3:48955585-48955604 None:intergenic 45.0%
! TGGCGACAACATCTCTAAGA+GGG + chr2_3:48955589-48955608 None:intergenic 45.0%
ATGGCGACAACATCTCTAAG+AGG + chr2_3:48955590-48955609 None:intergenic 45.0%
TCTTAGAGATGTTGTCGCCA+TGG - chr2_3:48955589-48955608 Msa0296100:three_prime_UTR 45.0%
CTTAGAGATGTTGTCGCCAT+GGG - chr2_3:48955590-48955609 Msa0296100:three_prime_UTR 45.0%
AGTGAATCTTGAGGTTCCCA+TGG + chr2_3:48955609-48955628 None:intergenic 45.0%
GGGAACCTCAAGATTCACTA+TGG - chr2_3:48955610-48955629 Msa0296100:three_prime_UTR 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG + chr2_3:48956282-48956301 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG - chr2_3:48956312-48956331 Msa0296100:CDS 45.0%
TGTCCCATCCATAATCACCA+GGG + chr2_3:48956323-48956342 None:intergenic 45.0%
CTGTTCTTGGCAAATGCTTC+TGG + chr2_3:48956366-48956385 None:intergenic 45.0%
!! CAGAAGCATTTGCCAAGAAC+AGG - chr2_3:48956364-48956383 Msa0296100:CDS 45.0%
TGAAGGTGATCCATGGAAGA+TGG - chr2_3:48956560-48956579 Msa0296100:intron 45.0%
GAAGGTGATCCATGGAAGAT+GGG - chr2_3:48956561-48956580 Msa0296100:intron 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG - chr2_3:48956652-48956671 Msa0296100:CDS 45.0%
! GATCCTGCTTTGAACCAAAC+TGG + chr2_3:48956658-48956677 None:intergenic 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG - chr2_3:48956769-48956788 Msa0296100:CDS 45.0%
GACCAAGAGGGTCAAAGTAT+TGG + chr2_3:48956852-48956871 None:intergenic 45.0%
AGCGAAAGTAACTGGATCGT+CGG + chr2_3:48956878-48956897 None:intergenic 45.0%
TGTCACTGGTAAAGGACCTT+TGG - chr2_3:48956972-48956991 Msa0296100:intron 45.0%
GGCATAAACCCAGGCATTAT+TGG + chr2_3:48957031-48957050 None:intergenic 45.0%
! AAACTTGGTGGCATAAACCC+AGG + chr2_3:48957040-48957059 None:intergenic 45.0%
! TGACTTCCTTGTTGGTTGGT+TGG + chr2_3:48957246-48957265 None:intergenic 45.0%
! GAGGAGTTTGGAGTATGCAT+GGG - chr2_3:48957570-48957589 Msa0296100:five_prime_UTR 45.0%
! AGGAGTTTGGAGTATGCATG+GGG - chr2_3:48957571-48957590 Msa0296100:five_prime_UTR 45.0%
TCCTTTCCTTGGTCAAAGGA+AGG - chr2_3:48955553-48955572 Msa0296100:three_prime_UTR 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG - chr2_3:48955554-48955573 Msa0296100:three_prime_UTR 45.0%
! GACAACATCTCTAAGAGGGT+TGG + chr2_3:48955585-48955604 None:intergenic 45.0%
! TGGCGACAACATCTCTAAGA+GGG + chr2_3:48955589-48955608 None:intergenic 45.0%
ATGGCGACAACATCTCTAAG+AGG + chr2_3:48955590-48955609 None:intergenic 45.0%
TCTTAGAGATGTTGTCGCCA+TGG - chr2_3:48955589-48955608 Msa0296100:three_prime_UTR 45.0%
CTTAGAGATGTTGTCGCCAT+GGG - chr2_3:48955590-48955609 Msa0296100:three_prime_UTR 45.0%
AGTGAATCTTGAGGTTCCCA+TGG + chr2_3:48955609-48955628 None:intergenic 45.0%
GGGAACCTCAAGATTCACTA+TGG - chr2_3:48955610-48955629 Msa0296100:three_prime_UTR 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG + chr2_3:48956282-48956301 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG - chr2_3:48956312-48956331 Msa0296100:CDS 45.0%
TGTCCCATCCATAATCACCA+GGG + chr2_3:48956323-48956342 None:intergenic 45.0%
CTGTTCTTGGCAAATGCTTC+TGG + chr2_3:48956366-48956385 None:intergenic 45.0%
!! CAGAAGCATTTGCCAAGAAC+AGG - chr2_3:48956364-48956383 Msa0296100:CDS 45.0%
TGAAGGTGATCCATGGAAGA+TGG - chr2_3:48956560-48956579 Msa0296100:intron 45.0%
GAAGGTGATCCATGGAAGAT+GGG - chr2_3:48956561-48956580 Msa0296100:intron 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG - chr2_3:48956652-48956671 Msa0296100:CDS 45.0%
! GATCCTGCTTTGAACCAAAC+TGG + chr2_3:48956658-48956677 None:intergenic 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG - chr2_3:48956769-48956788 Msa0296100:CDS 45.0%
GACCAAGAGGGTCAAAGTAT+TGG + chr2_3:48956852-48956871 None:intergenic 45.0%
AGCGAAAGTAACTGGATCGT+CGG + chr2_3:48956878-48956897 None:intergenic 45.0%
TGTCACTGGTAAAGGACCTT+TGG - chr2_3:48956972-48956991 Msa0296100:intron 45.0%
GGCATAAACCCAGGCATTAT+TGG + chr2_3:48957031-48957050 None:intergenic 45.0%
! AAACTTGGTGGCATAAACCC+AGG + chr2_3:48957040-48957059 None:intergenic 45.0%
! TGACTTCCTTGTTGGTTGGT+TGG + chr2_3:48957246-48957265 None:intergenic 45.0%
! GAGGAGTTTGGAGTATGCAT+GGG - chr2_3:48957570-48957589 Msa0296100:five_prime_UTR 45.0%
! AGGAGTTTGGAGTATGCATG+GGG - chr2_3:48957571-48957590 Msa0296100:five_prime_UTR 45.0%
!!! AAATTTTTACTAAAAAAATA+GGG + chr2_3:48955649-48955668 None:intergenic 5.0%
!!! AAATTTTTACTAAAAAAATA+GGG + chr2_3:48955649-48955668 None:intergenic 5.0%
CCCTTCCTTTGACCAAGGAA+AGG + chr2_3:48955557-48955576 None:intergenic 50.0%
GTGTCCCATCCATAATCACC+AGG + chr2_3:48956324-48956343 None:intergenic 50.0%
GATTATGGATGGGACACTGC+TGG - chr2_3:48956327-48956346 Msa0296100:CDS 50.0%
AACCTCAAGAGCCCTGTTCT+TGG + chr2_3:48956379-48956398 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG + chr2_3:48956573-48956592 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG - chr2_3:48956571-48956590 Msa0296100:intron 50.0%
ATCAACGGTCTTCCTGGTGT+CGG - chr2_3:48956799-48956818 Msa0296100:intron 50.0%
!! AGTATTGGCCACCAGGGTAA+AGG + chr2_3:48956837-48956856 None:intergenic 50.0%
!! GGTCAAAGTATTGGCCACCA+GGG + chr2_3:48956843-48956862 None:intergenic 50.0%
GGCCAATACTTTGACCCTCT+TGG - chr2_3:48956847-48956866 Msa0296100:intron 50.0%
ACCCTGTTGCCAATAATGCC+TGG - chr2_3:48957019-48957038 Msa0296100:intron 50.0%
CCCAGGCATTATTGGCAACA+GGG + chr2_3:48957023-48957042 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG - chr2_3:48957020-48957039 Msa0296100:intron 50.0%
ACCCAGGCATTATTGGCAAC+AGG + chr2_3:48957024-48957043 None:intergenic 50.0%
TATGCCACCAAGTTTGTGCC+TGG - chr2_3:48957045-48957064 Msa0296100:intron 50.0%
AGAACCAGGCACAAACTTGG+TGG + chr2_3:48957052-48957071 None:intergenic 50.0%
AGAGTGTATGCAAAGCCGCT+AGG - chr2_3:48957533-48957552 Msa0296100:exon 50.0%
GTATGCAAAGCCGCTAGGAT+TGG - chr2_3:48957538-48957557 Msa0296100:five_prime_UTR 50.0%
CGCTACTAGACCAATCCTAG+CGG + chr2_3:48957551-48957570 None:intergenic 50.0%
!! CTAGGATTGGTCTAGTAGCG+AGG - chr2_3:48957551-48957570 Msa0296100:five_prime_UTR 50.0%
TGGTCTAGTAGCGAGGAGTT+TGG - chr2_3:48957558-48957577 Msa0296100:five_prime_UTR 50.0%
! CGAGGAGTTTGGAGTATGCA+TGG - chr2_3:48957569-48957588 Msa0296100:five_prime_UTR 50.0%
TGGAGTATGCATGGGGTTCT+AGG - chr2_3:48957578-48957597 Msa0296100:five_prime_UTR 50.0%
CCCTTCCTTTGACCAAGGAA+AGG + chr2_3:48955557-48955576 None:intergenic 50.0%
GTGTCCCATCCATAATCACC+AGG + chr2_3:48956324-48956343 None:intergenic 50.0%
GATTATGGATGGGACACTGC+TGG - chr2_3:48956327-48956346 Msa0296100:CDS 50.0%
AACCTCAAGAGCCCTGTTCT+TGG + chr2_3:48956379-48956398 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG + chr2_3:48956573-48956592 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG - chr2_3:48956571-48956590 Msa0296100:intron 50.0%
ATCAACGGTCTTCCTGGTGT+CGG - chr2_3:48956799-48956818 Msa0296100:intron 50.0%
!! AGTATTGGCCACCAGGGTAA+AGG + chr2_3:48956837-48956856 None:intergenic 50.0%
!! GGTCAAAGTATTGGCCACCA+GGG + chr2_3:48956843-48956862 None:intergenic 50.0%
GGCCAATACTTTGACCCTCT+TGG - chr2_3:48956847-48956866 Msa0296100:intron 50.0%
ACCCTGTTGCCAATAATGCC+TGG - chr2_3:48957019-48957038 Msa0296100:intron 50.0%
CCCAGGCATTATTGGCAACA+GGG + chr2_3:48957023-48957042 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG - chr2_3:48957020-48957039 Msa0296100:intron 50.0%
ACCCAGGCATTATTGGCAAC+AGG + chr2_3:48957024-48957043 None:intergenic 50.0%
TATGCCACCAAGTTTGTGCC+TGG - chr2_3:48957045-48957064 Msa0296100:intron 50.0%
AGAACCAGGCACAAACTTGG+TGG + chr2_3:48957052-48957071 None:intergenic 50.0%
AGAGTGTATGCAAAGCCGCT+AGG - chr2_3:48957533-48957552 Msa0296100:exon 50.0%
GTATGCAAAGCCGCTAGGAT+TGG - chr2_3:48957538-48957557 Msa0296100:five_prime_UTR 50.0%
CGCTACTAGACCAATCCTAG+CGG + chr2_3:48957551-48957570 None:intergenic 50.0%
!! CTAGGATTGGTCTAGTAGCG+AGG - chr2_3:48957551-48957570 Msa0296100:five_prime_UTR 50.0%
TGGTCTAGTAGCGAGGAGTT+TGG - chr2_3:48957558-48957577 Msa0296100:five_prime_UTR 50.0%
! CGAGGAGTTTGGAGTATGCA+TGG - chr2_3:48957569-48957588 Msa0296100:five_prime_UTR 50.0%
TGGAGTATGCATGGGGTTCT+AGG - chr2_3:48957578-48957597 Msa0296100:five_prime_UTR 50.0%
CAGCACCCTTCCTTTGACCA+AGG + chr2_3:48955562-48955581 None:intergenic 55.0%
TGCCAAGAACAGGGCTCTTG+AGG - chr2_3:48956374-48956393 Msa0296100:CDS 55.0%
!! TGGGCTATGCTAGGAGCACT+CGG - chr2_3:48956580-48956599 Msa0296100:intron 55.0%
GTCGAAGGGTTCCGCATCAA+CGG - chr2_3:48956784-48956803 Msa0296100:CDS 55.0%
TTCCGCATCAACGGTCTTCC+TGG - chr2_3:48956793-48956812 Msa0296100:intron 55.0%
CACCAGGAAGACCGTTGATG+CGG + chr2_3:48956798-48956817 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+TGG - chr2_3:48956823-48956842 Msa0296100:intron 55.0%
GGCAACAACCTTTACCCTGG+TGG - chr2_3:48956826-48956845 Msa0296100:intron 55.0%
!! GGGTCAAAGTATTGGCCACC+AGG + chr2_3:48956844-48956863 None:intergenic 55.0%
! GATCGTCGGCTAGACCAAGA+GGG + chr2_3:48956864-48956883 None:intergenic 55.0%
CAGCACCCTTCCTTTGACCA+AGG + chr2_3:48955562-48955581 None:intergenic 55.0%
TGCCAAGAACAGGGCTCTTG+AGG - chr2_3:48956374-48956393 Msa0296100:CDS 55.0%
!! TGGGCTATGCTAGGAGCACT+CGG - chr2_3:48956580-48956599 Msa0296100:intron 55.0%
GTCGAAGGGTTCCGCATCAA+CGG - chr2_3:48956784-48956803 Msa0296100:CDS 55.0%
TTCCGCATCAACGGTCTTCC+TGG - chr2_3:48956793-48956812 Msa0296100:intron 55.0%
CACCAGGAAGACCGTTGATG+CGG + chr2_3:48956798-48956817 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+TGG - chr2_3:48956823-48956842 Msa0296100:intron 55.0%
GGCAACAACCTTTACCCTGG+TGG - chr2_3:48956826-48956845 Msa0296100:intron 55.0%
!! GGGTCAAAGTATTGGCCACC+AGG + chr2_3:48956844-48956863 None:intergenic 55.0%
! GATCGTCGGCTAGACCAAGA+GGG + chr2_3:48956864-48956883 None:intergenic 55.0%
! GGTCTTCCTGGTGTCGGAGA+GGG - chr2_3:48956805-48956824 Msa0296100:intron 60.0%
TTGTTGCCCTCTCCGACACC+AGG + chr2_3:48956814-48956833 None:intergenic 60.0%
! GGATCGTCGGCTAGACCAAG+AGG + chr2_3:48956865-48956884 None:intergenic 60.0%
! GGTCTTCCTGGTGTCGGAGA+GGG - chr2_3:48956805-48956824 Msa0296100:intron 60.0%
TTGTTGCCCTCTCCGACACC+AGG + chr2_3:48956814-48956833 None:intergenic 60.0%
! GGATCGTCGGCTAGACCAAG+AGG + chr2_3:48956865-48956884 None:intergenic 60.0%
! CGGTCTTCCTGGTGTCGGAG+AGG - chr2_3:48956804-48956823 Msa0296100:intron 65.0%
! CGGTCTTCCTGGTGTCGGAG+AGG - chr2_3:48956804-48956823 Msa0296100:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48955436 48957606 48955436 ID=Msa0296100;Name=Msa0296100
chr2_3 mRNA 48955436 48957606 48955436 ID=Msa0296100-mRNA-1;Parent=Msa0296100;Name=Msa0296100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|1|1|3|532|264
chr2_3 exon 48955436 48956477 48955436 ID=Msa0296100-mRNA-1:exon:15461;Parent=Msa0296100-mRNA-1
chr2_3 exon 48956647 48956808 48956647 ID=Msa0296100-mRNA-1:exon:15460;Parent=Msa0296100-mRNA-1
chr2_3 exon 48957411 48957606 48957411 ID=Msa0296100-mRNA-1:exon:15459;Parent=Msa0296100-mRNA-1
chr2_3 five_prime_UTR 48957534 48957606 48957534 ID=Msa0296100-mRNA-1:five_prime_utr;Parent=Msa0296100-mRNA-1
chr2_3 CDS 48957411 48957533 48957411 ID=Msa0296100-mRNA-1:cds;Parent=Msa0296100-mRNA-1
chr2_3 CDS 48956647 48956808 48956647 ID=Msa0296100-mRNA-1:cds;Parent=Msa0296100-mRNA-1
chr2_3 CDS 48955968 48956477 48955968 ID=Msa0296100-mRNA-1:cds;Parent=Msa0296100-mRNA-1
chr2_3 three_prime_UTR 48955436 48955967 48955436 ID=Msa0296100-mRNA-1:three_prime_utr;Parent=Msa0296100-mRNA-1
Gene Sequence

>Msa0296100

ATGGCATTGATGGCAGCAAGCTCAGCAGCTGTTGTTAAACAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCTGCCAACCCTCTTAGAGATGTTGTCGCCATGGGAACCTCAAGATTCACTATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGGCCATTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCACTCGGATGCATCACACCTGAAGTACTTGAAAAATGGGTGAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAAATCTTCTCAGAAGGTGGTCTTGACTATTTAGGGAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGTCTTGTCGAAGGGTTCCGCATCAACGGTCTTCCTGGTGTCGGAGAGGGCAACAACCTTTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTAGCCGACGATCCAGTTACTTTCGCTGAGCTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTCACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGACAACCCTGTTGCCAATAATGCCTGGGTTTATGCCACCAAGTTTGTGCCTGGTTCTTAA

Protein sequence

>Msa0296100

MALMAASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGS*