AlfalfaGEDB | Msa0691350

M. sativa cultivar zhongmu-4 / Msa0691350

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691350	XP_003607509.2	90.164	427	31	4	1	419	1	424	0.0	706

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691350	sp\|Q9SIV3\|GLK1_ARATH	45.916	453	176	21	1	418	1	419	2.94e-82	261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691350	G7JTX7	90.164	427	31	4	1	419	1	424	0.0	706

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TFs/TRs:

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Gene ID	Type	Classification
Msa0691350	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0691350	0.812754	3.616104e-51	-8.615850e-47
Msa0002110	Msa0691350	0.820120	8.110758e-53	-8.615850e-47
Msa0002690	Msa0691350	0.870748	1.154248e-66	-8.615850e-47
Msa0002700	Msa0691350	0.880378	5.769323e-70	-8.615850e-47
Msa0004180	Msa0691350	0.842041	3.293646e-58	-8.615850e-47
Msa0005500	Msa0691350	0.895072	1.356044e-75	-8.615850e-47
Msa0007810	Msa0691350	0.812213	4.746953e-51	-8.615850e-47
Msa0011060	Msa0691350	0.818007	2.454063e-52	-8.615850e-47
Msa0011100	Msa0691350	0.816393	5.660659e-52	-8.615850e-47
Msa0011410	Msa0691350	0.849499	3.109322e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691350	MtrunA17_Chr4g0040481	90.164	427	31	4	1	419	1	424	0.0	706
Msa0691350	MtrunA17_Chr2g0324891	63.073	436	127	19	1	416	1	422	2.00e-157	451
Msa0691350	MtrunA17_Chr5g0400241	34.868	304	145	10	121	410	267	531	3.03e-43	159
Msa0691350	MtrunA17_Chr4g0054981	36.559	279	141	11	145	416	299	548	8.21e-42	155
Msa0691350	MtrunA17_Chr4g0009851	38.710	93	56	1	120	212	134	225	6.64e-18	84.0
Msa0691350	MtrunA17_Chr3g0137101	47.368	76	40	0	148	223	190	265	2.07e-17	84.3
Msa0691350	MtrunA17_Chr1g0161431	36.567	134	73	2	81	214	137	258	5.20e-17	83.2
Msa0691350	MtrunA17_Chr1g0149841	54.545	66	30	0	153	218	188	253	2.72e-16	80.9
Msa0691350	MtrunA17_Chr2g0304841	54.839	62	28	0	151	212	208	269	5.25e-16	80.1
Msa0691350	MtrunA17_Chr4g0067981	56.667	60	26	0	155	214	214	273	6.46e-16	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691350	AT2G20570.1	45.916	453	176	21	1	418	1	419	2.99e-83	261
Msa0691350	AT2G20570.2	44.350	469	176	22	1	418	1	435	3.89e-79	251
Msa0691350	AT5G44190.1	41.591	440	176	15	1	415	1	384	3.32e-72	232
Msa0691350	AT5G44190.2	43.750	288	123	9	1	272	1	265	5.10e-60	199
Msa0691350	AT2G20570.3	36.865	453	170	22	1	418	1	372	1.38e-40	148
Msa0691350	AT4G18020.3	32.512	406	180	12	37	418	191	526	1.79e-34	134
Msa0691350	AT4G18020.2	32.512	406	180	12	37	418	191	526	1.79e-34	134
Msa0691350	AT4G18020.1	32.512	406	180	12	37	418	191	526	1.79e-34	134
Msa0691350	AT4G18020.6	32.512	406	180	12	37	418	191	526	1.79e-34	134
Msa0691350	AT4G18020.9	32.512	406	180	12	37	418	191	526	1.79e-34	134

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Find 157 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTTGTTCGGGTCA+AGG	0.542391	4_4:+59432834	Msa0691350:CDS
AAAACTAATTAATCCTTTAC+CGG	0.340492	4_4:+59436640	Msa0691350:three_prime_UTR
AAACCCATGGTGGGTGCAGC+TGG	0.319978	4_4:-59434177	None:intergenic
AAACTAATTAATCCTTTACC+GGG	0.572727	4_4:+59436641	Msa0691350:three_prime_UTR
AAAGACTGGTCCATATTTGA+AGG	0.536097	4_4:-59434255	None:intergenic
AACATGCAGAGACCATCATT+TGG	0.489976	4_4:+59436078	Msa0691350:intron
AACTAATTAATCCTTTACCG+GGG	0.665216	4_4:+59436642	Msa0691350:three_prime_UTR
AACTTCGACGACTTCTTTGT+TGG	0.363264	4_4:+59432648	Msa0691350:CDS
AAGCAGCAAGTTGGAATCAA+AGG	0.471928	4_4:+59434103	Msa0691350:CDS
AAGGGTCTAAAATGGTGAGG+AGG	0.633488	4_4:-59434216	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTTTCCAATAAATTTCCTT+CGG	-	chr4_4:59432625-59432644	None:intergenic	30.0%
GAATTCAAAGAAAGATTGTG+AGG	+	chr4_4:59432809-59432828	Msa0691350:CDS	30.0%
TGAGGATAAAACAAGTTGTT+CGG	+	chr4_4:59432827-59432846	Msa0691350:CDS	30.0%
AATCCATTGTTAAAAGATGC+AGG	+	chr4_4:59432900-59432919	Msa0691350:CDS	30.0%
AGTAAATCTAAGAATCCTCA+AGG	+	chr4_4:59432945-59432964	Msa0691350:CDS	30.0%
GTAAATCTAAGAATCCTCAA+GGG	+	chr4_4:59432946-59432965	Msa0691350:CDS	30.0%
TTTATAGTGCGTTGTATGTT+TGG	+	chr4_4:59433205-59433224	Msa0691350:intron	30.0%
TTATCATGTGAGAAGTAAAC+CGG	-	chr4_4:59433365-59433384	None:intergenic	30.0%
AATTAGTGTGTTTATTGTGC+AGG	+	chr4_4:59433687-59433706	Msa0691350:intron	30.0%
ATAATCTCCAAAATCCTTGA+AGG	-	chr4_4:59433784-59433803	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	59432264	59436913	59432264	ID=Msa0691350;Name=Msa0691350
chr4_4	mRNA	59432264	59436913	59432264	ID=Msa0691350-mRNA-1;Parent=Msa0691350;Name=Msa0691350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=246\|1\|1\|1\|1\|1\|6\|276\|419
chr4_4	exon	59432264	59432983	59432264	ID=Msa0691350-mRNA-1:exon:16148;Parent=Msa0691350-mRNA-1
chr4_4	exon	59433709	59433849	59433709	ID=Msa0691350-mRNA-1:exon:16149;Parent=Msa0691350-mRNA-1
chr4_4	exon	59434060	59434377	59434060	ID=Msa0691350-mRNA-1:exon:16150;Parent=Msa0691350-mRNA-1
chr4_4	exon	59435775	59435837	59435775	ID=Msa0691350-mRNA-1:exon:16151;Parent=Msa0691350-mRNA-1
chr4_4	exon	59436087	59436197	59436087	ID=Msa0691350-mRNA-1:exon:16152;Parent=Msa0691350-mRNA-1
chr4_4	exon	59436485	59436913	59436485	ID=Msa0691350-mRNA-1:exon:16153;Parent=Msa0691350-mRNA-1
chr4_4	five_prime_UTR	59432264	59432509	59432264	ID=Msa0691350-mRNA-1:five_prime_utr;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59432510	59432983	59432510	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59433709	59433849	59433709	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59434060	59434377	59434060	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59435775	59435837	59435775	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59436087	59436197	59436087	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	CDS	59436485	59436637	59436485	ID=Msa0691350-mRNA-1:cds;Parent=Msa0691350-mRNA-1
chr4_4	three_prime_UTR	59436638	59436913	59436638	ID=Msa0691350-mRNA-1:three_prime_utr;Parent=Msa0691350-mRNA-1

Gene Sequence

>Msa0691350

ATGCTTGCAGTGTCACCATTGAGGAACACTAACAAAGATGGAAACCAAGAAGAGATGGAGAGTTTTTCGATGGGGAGTACTACAATTACAACGGGCGACTTCGGAGACCTTTCCGAAGGAAATTTATTGGAAAGCATCAACTTCGACGACTTCTTTGTTGGCATCAACGTCGATGGAGACATCTTACCGGATTTGGTAATGGATCCAGAGATGTTTGCTGAGTTCTCCGTTAGTTACGGCGAGGAATCAGAGATGAATTCCTCGGCGTCATTGGAGAACACCAGCAAAGTGGAAAAGAAGAATTCAAAGAAAGATTGTGAGGATAAAACAAGTTGTTCGGGTCAAGGCTCGGAAGAGATAGCGAGTAAAAGAGATGAATCTGTGGTTGTGAATCCATTGTTAAAAGATGCAGGTGGAAAAGGAAGAAAATCATCGAGTAAATCTAAGAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGACTTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGTCACCTTCAGAAATATAGGTCACATAGAAAACATTTGCTAGCGCGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTGTAGGGGTGAAGAGAGAAGTGATCAGTCCATGGCCAGCTGCACCCACCATGGGTTTCCCCCCTCATCCTCCTCCTCCTCACCATTTTAGACCCTTACATGTATGGGGACATCCTTCAAATATGGACCAGTCTTTTCTGCACATGTGGCCTACACCGCAGCCACTCTCATGGACACCATCGGTAGCTCCTCCACCACCTCAAGATCCTTCATTTTGCCATTCTCATCACCAGCAGACTCCATTAAACGCAATGATCCGGCCAGGAACACATTGTTTCCCACCACCTCTGACAACAGTGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>Msa0691350

MLAVSPLRNTNKDGNQEEMESFSMGSTTITTGDFGDLSEGNLLESINFDDFFVGINVDGDILPDLVMDPEMFAEFSVSYGEESEMNSSASLENTSKVEKKNSKKDCEDKTSCSGQGSEEIASKRDESVVVNPLLKDAGGKGRKSSSKSKNPQGKRKVKVDWTPDLHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGVKREVISPWPAAPTMGFPPHPPPPHHFRPLHVWGHPSNMDQSFLHMWPTPQPLSWTPSVAPPPPQDPSFCHSHHQQTPLNAMIRPGTHCFPPPLTTVRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT*