AlfalfaGEDB | Msa0957100

M. sativa cultivar zhongmu-4 / Msa0957100

KEGG: -
GO: -
PFAM: PF01190.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957100	XP_013460852.1	88.393	112	13	0	19	130	51	162	2.02e-66	208

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957100	sp\|P33050\|PSC13_MAIZE	37.273	110	69	0	14	123	53	162	2.89e-16	73.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007970	Msa0957100	0.809301	2.024279e-50	-8.615850e-47
Msa0035120	Msa0957100	0.804892	1.737002e-49	-8.615850e-47
Msa0138360	Msa0957100	0.804690	1.914009e-49	-8.615850e-47
Msa0207350	Msa0957100	0.816240	6.123973e-52	-8.615850e-47
Msa0241830	Msa0957100	0.802877	4.553056e-49	-8.615850e-47
Msa0278570	Msa0957100	0.806800	6.899839e-50	-8.615850e-47
Msa0322900	Msa0957100	0.821354	4.220981e-53	-8.615850e-47
Msa0341690	Msa0957100	0.803670	3.120879e-49	-8.615850e-47
Msa0417970	Msa0957100	0.810758	9.828893e-51	-8.615850e-47
Msa0450400	Msa0957100	-0.803003	4.288206e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957100	MtrunA17_Chr3g0115561	88.393	112	13	0	19	130	51	162	1.86e-70	208
Msa0957100	MtrunA17_Chr3g0124301	34.211	114	73	2	14	125	43	156	8.15e-20	79.7
Msa0957100	MtrunA17_Chr2g0283801	36.111	108	65	2	19	123	51	157	1.38e-16	71.6
Msa0957100	MtrunA17_Chr2g0316111	34.188	117	71	3	7	123	57	167	1.58e-13	63.9
Msa0957100	MtrunA17_Chr2g0316151	34.188	117	71	3	7	123	57	167	1.96e-13	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957100	AT4G08685.1	44.660	103	57	0	19	121	50	152	3.06e-29	104
Msa0957100	AT1G78040.1	34.400	125	81	1	7	130	42	166	4.20e-20	81.3
Msa0957100	AT1G78040.3	34.400	125	81	1	7	130	42	166	4.20e-20	81.3
Msa0957100	AT1G78040.2	34.400	125	81	1	7	130	42	166	4.20e-20	81.3
Msa0957100	AT5G10130.1	38.462	104	64	0	21	124	53	156	1.32e-16	72.0
Msa0957100	AT4G18596.1	33.929	112	70	2	16	123	53	164	1.32e-15	69.7
Msa0957100	AT5G45880.1	33.036	112	71	2	16	123	55	166	2.32e-15	68.9
Msa0957100	AT4G18596.2	33.929	112	70	2	16	123	99	210	2.56e-15	69.7
Msa0957100	AT1G29140.1	34.821	112	69	2	16	123	52	163	3.74e-14	65.9

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Find 41 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATATAATTAAGCATA+TGG	0.421222	6_3:-66900497	None:intergenic
AAATCCAAAGTAAATAAACT+AGG	0.569739	6_3:-66900385	None:intergenic
AATTCCTAGTTTATTTACTT+TGG	0.368713	6_3:+66900381	Msa0957100:three_prime_UTR
ACGCGTGCTTGGTCACGCCC+AGG	0.556503	6_3:-66900219	None:intergenic
ACGGCATTGCCTCCAATGAC+AGG	0.539090	6_3:+66900259	Msa0957100:CDS
AGCATTGGCAAACCTGTCAT+TGG	0.466304	6_3:-66900271	None:intergenic
AGTTGTAGCGAAAGAGCACC+TGG	0.442879	6_3:+66900201	Msa0957100:CDS
AGTTTATTTACTTTGGATTT+GGG	0.259659	6_3:+66900388	Msa0957100:three_prime_UTR
ATGAATCTGTTTAGGTGCCG+AGG	0.607790	6_3:+66900029	Msa0957100:intron
ATGGCAGAGGAGGTTGCTTC+TGG	0.397308	6_3:+66900303	Msa0957100:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCTTTGTACATACTTTAG+TGG	+	chr6_3:66898861-66898880	Msa0957100:intron	30.0%
TAATAAGGTCAATATCTGCT+AGG	+	chr6_3:66898981-66899000	Msa0957100:intron	30.0%
GTATATCACACACTTACATT+AGG	+	chr6_3:66899016-66899035	Msa0957100:intron	30.0%
TGATCAATATTTATACACGC+AGG	+	chr6_3:66899542-66899561	Msa0957100:intron	30.0%
GATGTGTGTTTACATGAAAA+TGG	+	chr6_3:66899703-66899722	Msa0957100:intron	30.0%
ATCCAAACAAGACTTAAGTT+TGG	+	chr6_3:66899828-66899847	Msa0957100:intron	30.0%
GTTAAAAATCCAGCCATAAA+AGG	-	chr6_3:66899954-66899973	None:intergenic	30.0%
TGGAGAATATACAATCTATG+TGG	+	chr6_3:66900122-66900141	Msa0957100:CDS	30.0%
AGTCTTTGTACATACTTTAG+TGG	+	chr6_3:66898861-66898880	Msa0957100:intron	30.0%
TAATAAGGTCAATATCTGCT+AGG	+	chr6_3:66898981-66899000	Msa0957100:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	66898507	66900617	66898507	ID=Msa0957100;Name=Msa0957100
chr6_3	mRNA	66898507	66900617	66898507	ID=Msa0957100-mRNA-1;Parent=Msa0957100;Name=Msa0957100-mRNA-1;_AED=0.14;_eAED=0.22;_QI=0\|0\|0.5\|1\|1\|1\|2\|243\|130
chr6_3	exon	66898507	66898567	66898507	ID=Msa0957100-mRNA-1:exon:12445;Parent=Msa0957100-mRNA-1
chr6_3	exon	66900043	66900617	66900043	ID=Msa0957100-mRNA-1:exon:12446;Parent=Msa0957100-mRNA-1
chr6_3	CDS	66898507	66898567	66898507	ID=Msa0957100-mRNA-1:cds;Parent=Msa0957100-mRNA-1
chr6_3	CDS	66900043	66900374	66900043	ID=Msa0957100-mRNA-1:cds;Parent=Msa0957100-mRNA-1
chr6_3	three_prime_UTR	66900375	66900617	66900375	ID=Msa0957100-mRNA-1:three_prime_utr;Parent=Msa0957100-mRNA-1

Gene Sequence

>Msa0957100

ATGGTTGATGGTGCTGACCAATTTGAAGAAAAGGATCCAAATGAGGCAAAAGCACTTGCAAGTGCCGAGGTTATGCTGGAATGCAAGCAAAGGAACAACAACGAAGTTGTTTTCTCAAAACCAGGGAAGACTGATGCAACTGGAGAATATACAATCTATGTGGATCAAGATCGCGCAGATGAAGTGTGTGATGTGAAGCTAATAAACACTCCTGAGCGTAGTTGTAGCGAAAGAGCACCTGGGCGTGACCAAGCACGCGTTATTCTCACCCGTTACAACGGCATTGCCTCCAATGACAGGTTTGCCAATGCTATGTTGTACATGGCAGAGGAGGTTGCTTCTGGCTGTGCTGAGGTCCTCAAGCAAATGCTGGAATTGGATGAAGAGAATTAA

Protein sequence

>Msa0957100

MVDGADQFEEKDPNEAKALASAEVMLECKQRNNNEVVFSKPGKTDATGEYTIYVDQDRADEVCDVKLINTPERSCSERAPGRDQARVILTRYNGIASNDRFANAMLYMAEEVASGCAEVLKQMLELDEEN*