AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959280 MtrunA17_Chr7g0236991 69.424 556 167 1 1 556 1 553 0.0 823
Msa0959280 MtrunA17_Chr7g0237001 69.245 556 168 1 1 556 1 553 0.0 822
Msa0959280 MtrunA17_Chr7g0237041 69.245 556 168 1 1 556 1 553 0.0 822
Msa0959280 MtrunA17_Chr7g0237081 69.245 556 168 1 1 556 1 553 0.0 822
Msa0959280 MtrunA17_Chr7g0237051 69.245 556 168 1 1 556 1 553 0.0 822
Msa0959280 MtrunA17_Chr6g0466051 69.424 556 167 1 1 556 1 553 0.0 818
Msa0959280 MtrunA17_Chr6g0465911 69.245 556 168 1 1 556 1 553 0.0 816
Msa0959280 MtrunA17_Chr5g0425371 68.705 556 171 1 1 556 1 553 0.0 807
Msa0959280 MtrunA17_Chr6g0465441 67.446 556 178 1 1 556 1 553 0.0 797
Msa0959280 MtrunA17_Chr6g0451711 66.427 557 186 1 1 556 1 557 0.0 790
Msa0959280 MtrunA17_Chr3g0105071 66.607 557 185 1 1 556 1 557 0.0 785
Msa0959280 MtrunA17_Chr4g0024691 66.849 549 182 0 8 556 13 561 0.0 774
Msa0959280 MtrunA17_Chr6g0465851 70.270 518 154 0 39 556 1 518 0.0 771
Msa0959280 MtrunA17_Chr3g0082691 66.300 546 183 1 12 556 8 553 0.0 770
Msa0959280 MtrunA17_Chr7g0236961 70.281 498 148 0 59 556 1 498 0.0 755
Msa0959280 MtrunA17_Chr5g0431571 66.912 544 179 1 12 554 4 547 0.0 754
Msa0959280 MtrunA17_Chr7g0237011 70.281 498 148 0 59 556 1 498 0.0 753
Msa0959280 MtrunA17_Chr5g0431651 65.385 546 187 2 13 556 7 552 0.0 746
Msa0959280 MtrunA17_Chr4g0042111 57.451 557 234 2 2 556 7 562 0.0 673
Msa0959280 MtrunA17_Chr7g0236971 69.327 401 123 0 156 556 1 401 0.0 602
Msa0959280 MtrunA17_Chr6g0465981 71.543 376 104 1 1 376 1 373 0.0 564
Msa0959280 MtrunA17_Chr6g0465871 71.543 376 104 1 1 376 1 373 0.0 564
Msa0959280 MtrunA17_Chr6g0466081 71.543 376 104 1 1 376 1 373 0.0 564
Msa0959280 MtrunA17_Chr6g0466111 73.373 338 90 0 39 376 1 338 0.0 519
Msa0959280 MtrunA17_Chr6g0465931 73.077 338 91 0 39 376 1 338 0.0 516
Msa0959280 MtrunA17_Chr2g0319041 45.255 548 292 8 15 556 12 557 1.64e-173 502
Msa0959280 MtrunA17_Chr8g0336181 45.091 550 294 6 13 556 9 556 4.01e-171 496
Msa0959280 MtrunA17_Chr7g0236951 72.204 313 87 0 59 371 1 313 5.57e-171 486
Msa0959280 MtrunA17_Chr7g0237031 72.204 313 87 0 59 371 1 313 2.20e-170 485
Msa0959280 MtrunA17_Chr2g0319051 44.444 513 279 6 48 556 4 514 1.95e-162 472
Msa0959280 MtrunA17_Chr4g0008621 45.250 400 215 4 15 410 19 418 2.40e-122 367
Msa0959280 MtrunA17_Chr6g0466031 64.615 260 92 0 297 556 1 260 3.27e-121 357
Msa0959280 MtrunA17_Chr4g0023911 34.982 546 344 4 13 554 41 579 1.82e-116 357
Msa0959280 MtrunA17_Chr5g0445511 65.966 238 81 0 152 389 2 239 3.26e-113 336
Msa0959280 MtrunA17_Chr2g0319071 36.434 516 276 11 43 554 20 487 8.33e-112 342
Msa0959280 MtrunA17_Chr7g0237061 60.769 260 79 2 297 556 1 237 5.33e-107 320
Msa0959280 MtrunA17_Chr2g0310331 36.531 542 330 9 17 554 53 584 1.52e-105 329
Msa0959280 MtrunA17_Chr2g0323151 35.669 471 288 4 68 534 1 460 1.01e-101 315
Msa0959280 MtrunA17_Chr2g0323131 34.623 491 304 6 49 534 67 545 1.26e-101 318
Msa0959280 MtrunA17_Chr6g0466021 70.588 204 57 1 1 204 1 201 5.06e-100 301
Msa0959280 MtrunA17_Chr7g0237071 70.792 202 59 0 59 260 1 202 1.64e-98 298
Msa0959280 MtrunA17_Chr8g0357411 32.364 550 363 5 7 554 45 587 3.13e-95 302
Msa0959280 MtrunA17_Chr4g0048921 32.816 515 333 6 44 554 64 569 3.31e-89 286
Msa0959280 MtrunA17_Chr7g0237021 69.186 172 53 0 385 556 1 172 1.42e-85 263
Msa0959280 MtrunA17_Chr7g0236941 69.186 172 53 0 385 556 1 172 1.42e-85 263
Msa0959280 MtrunA17_Chr4g0048911 31.062 499 336 6 55 548 61 556 6.47e-82 266
Msa0959280 MtrunA17_Chr6g0465941 64.535 172 61 0 385 556 1 172 1.45e-78 244
Msa0959280 MtrunA17_Chr6g0466121 64.535 172 61 0 385 556 1 172 1.45e-78 244
Msa0959280 MtrunA17_Chr6g0465991 64.535 172 61 0 385 556 1 172 1.45e-78 244
Msa0959280 MtrunA17_Chr6g0466091 64.535 172 61 0 385 556 1 172 1.45e-78 244
Msa0959280 MtrunA17_Chr6g0465881 63.953 172 62 0 385 556 1 172 7.07e-78 243
Msa0959280 MtrunA17_Chr2g0319081 39.755 327 175 8 233 556 120 427 9.04e-76 246
Msa0959280 MtrunA17_Chr2g0319081 40.164 122 72 1 15 135 19 140 1.37e-22 100
Msa0959280 MtrunA17_Chr5g0445501 62.791 172 64 0 385 556 1 172 3.09e-75 236
Msa0959280 MtrunA17_Chr2g0280581 28.932 515 347 7 47 547 9 518 5.88e-73 241
Msa0959280 MtrunA17_Chr2g0310401 32.710 428 283 4 130 554 5 430 5.44e-71 234
Msa0959280 MtrunA17_Chr7g0236921 64.557 158 52 1 403 556 1 158 3.85e-70 222
Msa0959280 MtrunA17_Chr3g0108941 29.505 505 344 9 54 550 13 513 4.59e-70 234
Msa0959280 MtrunA17_Chr3g0105691 30.185 487 333 6 54 534 46 531 5.42e-69 232
Msa0959280 MtrunA17_Chr3g0109031 29.897 485 327 8 54 529 13 493 1.15e-68 230
Msa0959280 MtrunA17_Chr3g0109001 30.041 486 326 8 54 529 13 494 1.86e-68 229
Msa0959280 MtrunA17_Chr3g0109021 30.103 485 326 8 54 529 13 493 4.75e-68 228
Msa0959280 MtrunA17_Chr6g0477111 29.522 481 327 7 68 539 1 478 6.82e-67 225
Msa0959280 MtrunA17_Chr3g0108981 29.512 471 321 5 68 529 1 469 2.69e-66 223
Msa0959280 MtrunA17_Chr3g0108961 29.512 471 321 5 68 529 1 469 2.69e-66 223
Msa0959280 MtrunA17_Chr3g0099031 29.563 504 344 9 54 550 13 512 3.85e-66 223
Msa0959280 MtrunA17_Chr3g0108991 29.303 488 336 8 54 534 13 498 8.23e-66 223
Msa0959280 MtrunA17_Chr3g0108951 29.303 488 336 8 54 534 13 498 8.23e-66 223
Msa0959280 MtrunA17_Chr7g0236931 61.688 154 56 1 403 556 1 151 1.10e-64 207
Msa0959280 MtrunA17_Chr3g0108971 28.903 474 329 7 68 534 1 473 2.75e-64 218
Msa0959280 MtrunA17_Chr3g0109011 28.875 471 323 7 68 529 1 468 6.34e-64 217
Msa0959280 MtrunA17_Chr7g0236981 66.667 135 42 1 1 135 1 132 4.18e-58 190
Msa0959280 MtrunA17_Chr6g0477121 29.136 405 276 6 133 529 10 411 2.10e-56 195
Msa0959280 MtrunA17_Chr7g0233861 63.704 135 40 1 196 330 33 158 2.40e-52 176
Msa0959280 MtrunA17_Chr7g0217361 33.000 300 200 1 255 553 8 307 1.38e-48 171
Msa0959280 MtrunA17_Chr5g0445521 65.306 98 34 0 1 98 1 98 1.35e-39 139
Msa0959280 MtrunA17_Chr8g0357221 35.341 249 154 4 10 257 48 290 1.41e-39 145
Msa0959280 MtrunA17_Chr3g0101681 26.255 518 336 16 70 554 276 780 2.04e-37 147
Msa0959280 MtrunA17_Chr2g0310121 24.277 519 345 16 70 554 275 779 5.51e-35 140
Msa0959280 MtrunA17_Chr5g0445401 70.526 95 24 2 166 257 1 94 1.85e-34 125
Msa0959280 MtrunA17_Chr8g0357231 29.457 258 180 2 298 554 1 257 3.11e-34 130
Msa0959280 MtrunA17_Chr3g0082711 50.000 116 41 1 441 556 1 99 1.05e-32 120
Msa0959280 MtrunA17_Chr7g0259881 26.909 275 169 6 68 313 227 498 6.19e-24 106
Msa0959280 MtrunA17_Chr7g0218001 29.562 274 161 6 68 310 344 616 1.08e-23 105
Msa0959280 MtrunA17_Chr7g0217351 29.167 216 146 4 46 258 62 273 2.27e-21 94.7
Msa0959280 MtrunA17_Chr2g0281651 23.625 309 223 8 233 535 43 344 2.68e-19 90.5
Msa0959280 MtrunA17_Chr7g0218041 30.380 237 140 6 120 332 3 238 1.08e-14 76.3
Msa0959280 MtrunA17_Chr2g0310411 31.967 122 75 3 10 131 51 164 2.14e-13 68.6
Msa0959280 MtrunA17_Chr4g0008631 36.145 83 51 2 475 556 1 82 5.79e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959280 AT5G23960.2 39.564 551 318 7 13 556 3 545 1.13e-144 428
Msa0959280 AT5G23960.1 39.531 554 316 9 13 556 3 547 2.11e-143 425
Msa0959280 AT1G70080.1 37.163 557 340 7 8 556 57 611 2.41e-131 396
Msa0959280 AT3G14490.1 37.546 546 331 5 17 556 60 601 9.54e-127 384
Msa0959280 AT3G14520.1 36.229 541 335 5 22 556 68 604 8.12e-126 382
Msa0959280 AT1G31950.3 36.131 548 327 6 22 556 70 607 2.24e-125 381
Msa0959280 AT1G31950.1 36.414 541 334 5 22 556 70 606 1.75e-124 379
Msa0959280 AT3G14540.1 36.481 540 335 4 22 556 65 601 2.70e-123 375
Msa0959280 AT3G29410.1 35.101 547 341 5 17 556 64 603 8.39e-118 361
Msa0959280 AT3G32030.1 34.259 540 347 6 22 556 68 604 1.63e-116 358
Msa0959280 AT5G44630.1 35.780 545 339 8 18 554 14 555 3.81e-116 355
Msa0959280 AT4G20210.1 34.307 548 347 7 17 556 58 600 3.97e-115 354
Msa0959280 AT1G33750.1 34.019 535 347 4 24 556 73 603 4.93e-114 352
Msa0959280 AT4G13300.1 34.879 539 340 7 25 556 20 554 7.02e-113 347
Msa0959280 AT3G29410.2 35.600 500 318 3 59 556 1 498 1.48e-112 344
Msa0959280 AT4G20200.1 35.328 518 321 8 48 556 92 604 1.74e-112 347
Msa0959280 AT4G15870.1 34.935 541 326 10 25 556 75 598 9.09e-108 335
Msa0959280 AT4G13280.2 34.264 537 342 7 27 556 22 554 1.31e-107 333
Msa0959280 AT1G31950.2 36.933 463 269 6 22 471 70 522 4.42e-106 328
Msa0959280 AT3G29190.1 32.948 519 332 7 48 556 89 601 2.14e-105 329
Msa0959280 AT3G14540.2 37.668 446 271 3 22 463 65 507 7.24e-105 325
Msa0959280 AT2G23230.2 34.249 546 344 9 16 551 55 595 1.76e-102 322
Msa0959280 AT4G20230.1 33.463 514 329 7 48 552 92 601 1.90e-102 322
Msa0959280 AT4G20230.2 33.463 514 329 7 48 552 104 613 2.18e-102 322
Msa0959280 AT3G29110.1 34.191 544 349 8 17 554 55 595 7.77e-102 320
Msa0959280 AT2G23230.1 34.066 546 340 10 16 551 55 590 3.40e-100 316
Msa0959280 AT1G66020.1 32.051 546 362 6 17 556 56 598 4.88e-98 310
Msa0959280 AT1G48800.1 32.234 546 354 9 17 552 63 602 2.88e-96 305
Msa0959280 AT4G13280.1 33.333 537 317 9 27 556 22 524 7.12e-96 302
Msa0959280 AT4G16730.1 32.413 543 344 10 28 554 2 537 2.23e-95 301
Msa0959280 AT4G16730.2 32.665 499 315 8 73 556 1 493 7.51e-92 290
Msa0959280 AT4G16740.1 31.835 556 352 13 14 556 23 564 4.66e-89 285
Msa0959280 AT1G61680.1 32.465 499 325 4 54 546 77 569 8.86e-89 285
Msa0959280 AT2G24210.1 31.071 560 365 11 10 556 39 590 6.84e-87 280
Msa0959280 AT1G61680.2 32.064 499 320 5 54 546 77 562 1.91e-85 276
Msa0959280 AT5G48110.1 37.318 343 210 5 215 556 1 339 2.78e-84 266
Msa0959280 AT1G48820.1 30.983 539 322 11 17 549 63 557 6.43e-84 272
Msa0959280 AT3G25820.1 30.179 560 363 13 15 556 45 594 1.95e-80 264
Msa0959280 AT3G25830.1 30.179 560 363 13 15 556 45 594 1.95e-80 264
Msa0959280 AT3G25810.1 30.357 560 365 11 15 556 45 597 2.07e-79 261
Msa0959280 AT4G16740.2 34.301 379 228 8 14 381 23 391 4.42e-69 228
Msa0959280 AT1G66020.2 34.146 369 234 6 17 379 56 421 5.16e-67 224
Msa0959280 AT3G25820.2 32.041 387 242 9 15 389 45 422 1.46e-61 209
Msa0959280 AT4G16740.4 34.451 328 195 7 14 330 23 341 1.43e-58 199
Msa0959280 AT4G16740.3 34.451 328 195 7 14 330 23 341 1.43e-58 199
Msa0959280 AT3G25820.4 32.722 327 201 7 15 330 45 363 6.22e-54 188
Msa0959280 AT3G25820.3 32.722 327 201 7 15 330 45 363 6.22e-54 188
Msa0959280 AT1G79460.1 24.762 525 338 19 70 556 274 779 8.85e-32 130
Msa0959280 AT1G61120.1 23.518 506 357 10 71 556 289 784 8.56e-28 119
Msa0959280 AT4G02780.1 28.846 260 157 5 68 300 329 587 6.92e-23 103

Find 97 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCTTGCTGTGCTATTT+AGG 0.103456 6_3:-75830064 Msa0959280:CDS
TCTACTTGCATTGGCAAAAT+TGG 0.119753 6_3:-75829042 Msa0959280:CDS
TTCTCTTGCTGTGCTATTTA+GGG 0.189824 6_3:-75830063 Msa0959280:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6_3:+75828769 None:intergenic
ATGCAAGTAGAATTTCATTA+TGG 0.248221 6_3:+75829054 None:intergenic
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_3:-75829002 Msa0959280:CDS
TACAAGAGTTATGTTCAAAA+TGG 0.269625 6_3:-75830113 Msa0959280:CDS
TCCTTATGCTTCAGAATCTA+TGG 0.272455 6_3:-75830624 Msa0959280:intron
ACAAATTGATAAACTGAAAA+AGG 0.292144 6_3:-75830264 Msa0959280:CDS
AGACGAAATTAATCAAGTTT+TGG 0.301364 6_3:-75830144 Msa0959280:CDS
GTCATCAATGTATGATAAAA+TGG 0.310334 6_3:+75828727 None:intergenic
CAGATTTCCACCCTAGCGTT+TGG 0.311610 6_3:-75830661 Msa0959280:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.325288 6_3:-75830660 Msa0959280:CDS
TGCAAAACCGATTTCTCATT+AGG 0.335406 6_3:+75830695 None:intergenic
TAATTGCTTGGAGGATCTTC+CGG 0.335446 6_3:-75828364 Msa0959280:CDS
ATGCTGCTGCTATACATTGT+AGG 0.337003 6_3:-75827292 Msa0959280:CDS
TTCCTTGCTCGTCCTTGAAT+TGG 0.345275 6_3:+75829330 None:intergenic
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_3:-75828814 Msa0959280:CDS
CTGCTATACATTGTAGGCTT+AGG 0.348781 6_3:-75827286 Msa0959280:CDS
TGTGCCGCAGTATTCATATC+AGG 0.354426 6_3:+75830284 None:intergenic
GGTTCATGGTGAACAAATAT+TGG 0.355890 6_3:-75829240 Msa0959280:CDS
AGGACATGTTTCTTCGTACT+TGG 0.361077 6_3:-75827116 Msa0959280:CDS
CATCAATCCTAATGAGAAAT+CGG 0.381109 6_3:-75830702 Msa0959280:CDS
GATTGATTCAATATGTCGTT+TGG 0.383797 6_3:-75830186 Msa0959280:CDS
TGCAAGTAGAATTTCATTAT+GGG 0.387262 6_3:+75829055 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6_3:-75827102 Msa0959280:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_3:+75829076 None:intergenic
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_3:+75828345 None:intergenic
GTTGCTTTATAAATCACTCT+TGG 0.404999 6_3:-75828331 Msa0959280:CDS
AATAAATACTCAAATTTCTA+CGG 0.417455 6_3:+75826850 None:intergenic
TGCATGTACTCCTCTGTTGT+TGG 0.418606 6_3:+75827431 None:intergenic
AAAAGAAAATTGACAACGCT+TGG 0.444020 6_3:-75827039 Msa0959280:CDS
TTCTGGTCACCTTGAGTCCA+TGG 0.446304 6_3:-75829198 Msa0959280:CDS
ATTGATTCAATATGTCGTTT+GGG 0.450241 6_3:-75830185 Msa0959280:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_3:-75829009 Msa0959280:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_3:-75828376 Msa0959280:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_3:-75827372 Msa0959280:CDS
TGCTATACATTGTAGGCTTA+GGG 0.457944 6_3:-75827285 Msa0959280:CDS
ATAGTTAGCATTCAGCCATC+TGG 0.458951 6_3:+75827457 None:intergenic
TAATGAAATTCTACTTGCAT+TGG 0.460272 6_3:-75829051 Msa0959280:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_3:-75827371 Msa0959280:CDS
GATGACACATATGATGCATA+TGG 0.467097 6_3:-75828710 Msa0959280:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6_3:-75828291 Msa0959280:CDS
ATAAATACTCAAATTTCTAC+GGG 0.477038 6_3:+75826851 None:intergenic
TTGCAAGAGAAGGACTCAAT+CGG 0.484754 6_3:+75829171 None:intergenic
CGCTTGGAAAGATATAAATC+AGG 0.490061 6_3:-75827023 Msa0959280:CDS
ACAAATATTGGAAGAGGCGT+TGG 0.490523 6_3:-75829228 Msa0959280:CDS
TTGAGAACACACGTAAGAAT+AGG 0.491590 6_3:+75826971 None:intergenic
ATATTGGGGCTCAAAATATA+CGG 0.495144 6_3:+75828784 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.502767 6_3:-75830055 Msa0959280:CDS
CATGGACTTTACGTTTCACC+TGG 0.512238 6_3:-75830029 Msa0959280:intron
AGGACTCAATCGGGTGGCCA+TGG 0.512884 6_3:+75829181 None:intergenic
AGATGTGTTCAACCAATTCA+AGG 0.513117 6_3:-75829342 Msa0959280:CDS
TGAGGGAATATGATTTGAGT+AGG 0.513307 6_3:-75827084 Msa0959280:CDS
ACCATAGATTCTGAAGCATA+AGG 0.518574 6_3:+75830623 None:intergenic
CGACAAAAGACATCTTTGAC+TGG 0.519009 6_3:-75827340 Msa0959280:CDS
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6_3:+75829104 None:intergenic
GCCTCACATATGATGGTTCA+TGG 0.522278 6_3:-75829254 Msa0959280:CDS
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_3:+75827383 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_3:-75828870 Msa0959280:intron
GTGGGATATTAATTGCTTGG+AGG 0.529634 6_3:-75828373 Msa0959280:CDS
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_3:+75827477 None:intergenic
AACAATGGTCAGAGATGTTG+AGG 0.533818 6_3:-75829297 Msa0959280:CDS
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6_3:+75828770 None:intergenic
AAACAGTTTGAGCAGAAAAG+AGG 0.539017 6_3:-75827136 Msa0959280:intron
TGCAAGAGAAGGACTCAATC+GGG 0.546913 6_3:+75829172 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6_3:-75828772 Msa0959280:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.549142 6_3:-75827472 Msa0959280:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.552007 6_3:-75830047 Msa0959280:CDS
TGGTGAACAAATATTGGAAG+AGG 0.558532 6_3:-75829234 Msa0959280:CDS
TTTACTTGTGTTGCAAGAGA+AGG 0.558925 6_3:+75829161 None:intergenic
GAGGGAATATGATTTGAGTA+GGG 0.558934 6_3:-75827083 Msa0959280:CDS
ATCGGGTGGCCATGGACTCA+AGG 0.566605 6_3:+75829189 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6_3:-75827101 Msa0959280:CDS
GTATGAAGCCTCACATATGA+TGG 0.567934 6_3:-75829261 Msa0959280:CDS
ATAGGTAACGGAACATCAGT+TGG 0.569838 6_3:+75826989 None:intergenic
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_3:-75827396 Msa0959280:CDS
ATAGCACAGCAAGAGAATGA+AGG 0.572946 6_3:+75830069 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_3:-75827377 Msa0959280:CDS
CTTTATATATAGGTGGTGGA+AGG 0.588928 6_3:-75828876 Msa0959280:intron
ACTACTCTATCTCGTGCATA+CGG 0.590301 6_3:+75828830 None:intergenic
CACATATCAACAATATCAAG+TGG 0.594145 6_3:-75827410 Msa0959280:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.596026 6_3:-75830659 Msa0959280:CDS
AATCTCCCCAAACGCTAGGG+TGG 0.601357 6_3:+75830654 None:intergenic
GATAACTACACACACTCTGA+CGG 0.610210 6_3:-75826911 Msa0959280:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_3:+75827384 None:intergenic
AACCAATTCAAGGACGAGCA+AGG 0.615624 6_3:-75829332 Msa0959280:CDS
AGGAAACTTCAGTGAAACAA+TGG 0.623863 6_3:-75829312 Msa0959280:CDS
GACAAAAGACATCTTTGACT+GGG 0.626667 6_3:-75827339 Msa0959280:CDS
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_3:-75827480 Msa0959280:CDS
ACCATGAACCATCATATGTG+AGG 0.664721 6_3:+75829253 None:intergenic
ACAATGGTCAGAGATGTTGA+GGG 0.666287 6_3:-75829296 Msa0959280:CDS
GGATGAAATTGTGTCAAGCG+AGG 0.675331 6_3:-75827264 Msa0959280:intron
ACACACGTAAGAATAGGTAA+CGG 0.686084 6_3:+75826977 None:intergenic
AAGAGAAGGACTCAATCGGG+TGG 0.695745 6_3:+75829175 None:intergenic
GGAACCTGATATGAATACTG+CGG 0.696636 6_3:-75830288 Msa0959280:CDS
TAACTATATACCAACAACAG+AGG 0.703519 6_3:-75827441 Msa0959280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTAAAAAAAATTAC+AGG + chr6_3:75827778-75827797 None:intergenic 10.0%
!! TGATTATAAAGTAATATTAA+TGG - chr6_3:75827977-75827996 Msa0959280:intron 10.0%
!!! TATTTTTTGTCTTTATATAT+AGG - chr6_3:75828692-75828711 Msa0959280:CDS 10.0%
!!! ATTTCATTTTAAATTTTGTA+TGG - chr6_3:75829446-75829465 Msa0959280:intron 10.0%
!! AATATAAAATAAACGTTAAT+AGG + chr6_3:75830052-75830071 None:intergenic 10.0%
!! TTGAGTAAAACAAATTATAT+TGG - chr6_3:75827637-75827656 Msa0959280:intron 15.0%
!! TAATATGAATGTCTAAAAAA+TGG - chr6_3:75827738-75827757 Msa0959280:intron 15.0%
!!! ATACTTTTATATTTTGATGT+AGG + chr6_3:75828630-75828649 None:intergenic 15.0%
!! ATAAAGACAAAAAATAGTAT+AGG + chr6_3:75828688-75828707 None:intergenic 15.0%
!!! AAACATTTTTACATCATTTT+AGG - chr6_3:75829547-75829566 Msa0959280:intron 15.0%
!! TATAAAAAACTTATTATCCA+TGG - chr6_3:75829686-75829705 Msa0959280:intron 15.0%
!! TTGTAGAATTAATATTACAA+AGG + chr6_3:75829927-75829946 None:intergenic 15.0%
!! ACAAATTGATAAACTGAAAA+AGG - chr6_3:75827314-75827333 Msa0959280:CDS 20.0%
!! GAGAATAATTAAAAGAAATG+AGG + chr6_3:75827915-75827934 None:intergenic 20.0%
!! AATATTAATGGTATACATGT+AGG - chr6_3:75827989-75828008 Msa0959280:intron 20.0%
!!! ATTGTTGTTTAATATTATCG+TGG - chr6_3:75828195-75828214 Msa0959280:intron 20.0%
!!! TTTTTGTCTTTATATATAGG+TGG - chr6_3:75828695-75828714 Msa0959280:CDS 20.0%
!!! ATTGTTTTATCTCTAAAGTT+TGG + chr6_3:75828983-75829002 None:intergenic 20.0%
!!! TTCTTTTAACAATAGAGTAA+TGG - chr6_3:75829154-75829173 Msa0959280:CDS 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_3:75829183-75829202 Msa0959280:CDS 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_3:75829187-75829206 Msa0959280:CDS 20.0%
!!! AAATTTTGTATGGTTATCAA+AGG - chr6_3:75829456-75829475 Msa0959280:intron 20.0%
!!! AATTTTGTATGGTTATCAAA+GGG - chr6_3:75829457-75829476 Msa0959280:intron 20.0%
!!! TATCTTGACATTTTAATTAG+TGG - chr6_3:75829953-75829972 Msa0959280:intron 20.0%
!! TTAACAACATTTAGTTACAT+AGG - chr6_3:75830010-75830029 Msa0959280:intron 20.0%
!!! TTTAGTTACATAGGTTTTTT+TGG - chr6_3:75830019-75830038 Msa0959280:intron 20.0%
!!! TATAATAAGTTGACATAATG+AGG - chr6_3:75830366-75830385 Msa0959280:intron 20.0%
! AATTCTTTAAATCAACAGCA+AGG - chr6_3:75826982-75827001 Msa0959280:CDS 25.0%
! ATTATGAAAAGTGATTGAAG+AGG - chr6_3:75827013-75827032 Msa0959280:CDS 25.0%
!! ATGACACTTAATTGTTGTTA+TGG + chr6_3:75827225-75827244 None:intergenic 25.0%
!!! TGTATGTTTTGAATACATAC+AGG - chr6_3:75827269-75827288 Msa0959280:CDS 25.0%
! AATTGATAAACTGAAAAAGG+AGG - chr6_3:75827317-75827336 Msa0959280:CDS 25.0%
!! ATTGATTCAATATGTCGTTT+GGG - chr6_3:75827393-75827412 Msa0959280:CDS 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_3:75827434-75827453 Msa0959280:CDS 25.0%
! TACAAGAGTTATGTTCAAAA+TGG - chr6_3:75827465-75827484 Msa0959280:CDS 25.0%
!! TAAGTTGAGATATATATACC+AGG + chr6_3:75827570-75827589 None:intergenic 25.0%
!! GTAATATTTGACTTTGTCAT+GGG - chr6_3:75827709-75827728 Msa0959280:intron 25.0%
! ATGTGAACATTACATAGATA+AGG + chr6_3:75827892-75827911 None:intergenic 25.0%
! TGCAAGTAGAATTTCATTAT+GGG + chr6_3:75828526-75828545 None:intergenic 25.0%
! ATGCAAGTAGAATTTCATTA+TGG + chr6_3:75828527-75828546 None:intergenic 25.0%
! TAATGAAATTCTACTTGCAT+TGG - chr6_3:75828527-75828546 Msa0959280:intron 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_3:75828854-75828873 None:intergenic 25.0%
!! TGAATTAGAACTTTTTACTC+AGG - chr6_3:75828900-75828919 Msa0959280:intron 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_3:75829186-75829205 Msa0959280:CDS 25.0%
!!! CTCTTACTTCTTTTAAGAAT+GGG + chr6_3:75829331-75829350 None:intergenic 25.0%
!!! ACTCTTACTTCTTTTAAGAA+TGG + chr6_3:75829332-75829351 None:intergenic 25.0%
!! TCATGAAGATACATTTTTCT+TGG + chr6_3:75829608-75829627 None:intergenic 25.0%
!!! TATCCATGGTTTTATTAACT+CGG - chr6_3:75829700-75829719 Msa0959280:intron 25.0%
! TGCAAAAAACTTATTATCCA+TGG - chr6_3:75829841-75829860 Msa0959280:intron 25.0%
CATCAATCCTAATGAGAAAT+CGG - chr6_3:75826876-75826895 Msa0959280:CDS 30.0%
GAAGAGGAATGAAACTTAAA+TGG - chr6_3:75827029-75827048 Msa0959280:CDS 30.0%
GGAATGAAACTTGATATTCT+AGG - chr6_3:75827073-75827092 Msa0959280:CDS 30.0%
!!! ATCAAGTTGACTTTTTCCAT+GGG + chr6_3:75827375-75827394 None:intergenic 30.0%
!!! AATCAAGTTGACTTTTTCCA+TGG + chr6_3:75827376-75827395 None:intergenic 30.0%
! GATTGATTCAATATGTCGTT+TGG - chr6_3:75827392-75827411 Msa0959280:CDS 30.0%
! CGTAATATTTGACTTTGTCA+TGG - chr6_3:75827708-75827727 Msa0959280:intron 30.0%
AAAAAATTACAGGCTAACAG+TGG + chr6_3:75827768-75827787 None:intergenic 30.0%
!!! ACGAAAGACACTCTTATTTT+AGG + chr6_3:75827844-75827863 None:intergenic 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_3:75828581-75828600 None:intergenic 30.0%
TTGTCTTTATATATAGGTGG+TGG - chr6_3:75828698-75828717 Msa0959280:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_3:75828765-75828784 Msa0959280:CDS 30.0%
ATATTGGGGCTCAAAATATA+CGG + chr6_3:75828797-75828816 None:intergenic 30.0%
TTTCCTTGCTTGAGAATATT+GGG + chr6_3:75828812-75828831 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG + chr6_3:75828813-75828832 None:intergenic 30.0%
! TTTTTACTCAGGCAATTGAA+AGG - chr6_3:75828911-75828930 Msa0959280:intron 30.0%
AATTTACCCATCTTCAATCT+TGG - chr6_3:75829066-75829085 Msa0959280:CDS 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_3:75829247-75829266 Msa0959280:CDS 30.0%
!! TTCTTTTAAGAATGGGTCAA+GGG + chr6_3:75829324-75829343 None:intergenic 30.0%
! AAAGTATCACCATAATGACT+TGG - chr6_3:75829582-75829601 Msa0959280:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_3:75830137-75830156 Msa0959280:CDS 30.0%
CACATATCAACAATATCAAG+TGG - chr6_3:75830168-75830187 Msa0959280:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_3:75830477-75830496 Msa0959280:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_3:75830527-75830546 None:intergenic 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG + chr6_3:75830540-75830559 None:intergenic 30.0%
AAAAGAAAATTGACAACGCT+TGG - chr6_3:75830539-75830558 Msa0959280:intron 30.0%
! TGCAAAACCGATTTCTCATT+AGG + chr6_3:75826886-75826905 None:intergenic 35.0%
TCCTTATGCTTCAGAATCTA+TGG - chr6_3:75826954-75826973 Msa0959280:CDS 35.0%
!! ACCATAGATTCTGAAGCATA+AGG + chr6_3:75826958-75826977 None:intergenic 35.0%
AATCCTGGGCTAATATTAAG+TGG + chr6_3:75827138-75827157 None:intergenic 35.0%
ATGAGAGTAACTTGAATCCT+GGG + chr6_3:75827152-75827171 None:intergenic 35.0%
! TTTTGCTAAATGCAGTCCAT+AGG - chr6_3:75827194-75827213 Msa0959280:intron 35.0%
TGTTGTTATGGATCAACCTA+TGG + chr6_3:75827213-75827232 None:intergenic 35.0%
!! ATTCTCTTGCTGTGCTATTT+AGG - chr6_3:75827514-75827533 Msa0959280:intron 35.0%
!! TTCTCTTGCTGTGCTATTTA+GGG - chr6_3:75827515-75827534 Msa0959280:intron 35.0%
!! AAGAGTGTCTTTCGTTTGAT+CGG - chr6_3:75827849-75827868 Msa0959280:intron 35.0%
AGATGTGTTCAACCAATTCA+AGG - chr6_3:75828236-75828255 Msa0959280:intron 35.0%
AGGAAACTTCAGTGAAACAA+TGG - chr6_3:75828266-75828285 Msa0959280:CDS 35.0%
GGTTCATGGTGAACAAATAT+TGG - chr6_3:75828338-75828357 Msa0959280:CDS 35.0%
TGGTGAACAAATATTGGAAG+AGG - chr6_3:75828344-75828363 Msa0959280:CDS 35.0%
TTTACTTGTGTTGCAAGAGA+AGG + chr6_3:75828420-75828439 None:intergenic 35.0%
! TCTACTTGCATTGGCAAAAT+TGG - chr6_3:75828536-75828555 Msa0959280:intron 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_3:75828575-75828594 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_3:75828576-75828595 Msa0959280:intron 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_3:75828702-75828721 Msa0959280:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_3:75828764-75828783 Msa0959280:CDS 35.0%
TTCCTTGCTTGAGAATATTG+GGG + chr6_3:75828811-75828830 None:intergenic 35.0%
GATGACACATATGATGCATA+TGG - chr6_3:75828868-75828887 Msa0959280:intron 35.0%
! CTAGTCATCAAGTTTAGAGT+TGG - chr6_3:75829021-75829040 Msa0959280:CDS 35.0%
TAGCAACCAAGATTGAAGAT+GGG + chr6_3:75829075-75829094 None:intergenic 35.0%
TTAGCAACCAAGATTGAAGA+TGG + chr6_3:75829076-75829095 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_3:75829202-75829221 Msa0959280:CDS 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_3:75829236-75829255 None:intergenic 35.0%
GAGCAAGAAATGAAGAAAGA+AGG - chr6_3:75829287-75829306 Msa0959280:CDS 35.0%
!! CTTCTTTTAAGAATGGGTCA+AGG + chr6_3:75829325-75829344 None:intergenic 35.0%
TGGTTATCAAAGGGAAGTTT+AGG - chr6_3:75829466-75829485 Msa0959280:intron 35.0%
! TTTTCTTGGCCAAGTCATTA+TGG + chr6_3:75829594-75829613 None:intergenic 35.0%
GAACCGAGTTAATAAAACCA+TGG + chr6_3:75829706-75829725 None:intergenic 35.0%
GAACTGAGTTCATATAACCA+TGG + chr6_3:75829861-75829880 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_3:75830098-75830117 Msa0959280:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_3:75830206-75830225 Msa0959280:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_3:75830207-75830226 Msa0959280:CDS 35.0%
GACAAAAGACATCTTTGACT+GGG - chr6_3:75830239-75830258 Msa0959280:CDS 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_3:75830276-75830295 None:intergenic 35.0%
TGCTATACATTGTAGGCTTA+GGG - chr6_3:75830293-75830312 Msa0959280:intron 35.0%
AAACAGTTTGAGCAGAAAAG+AGG - chr6_3:75830442-75830461 Msa0959280:intron 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_3:75830476-75830495 Msa0959280:intron 35.0%
TGAGGGAATATGATTTGAGT+AGG - chr6_3:75830494-75830513 Msa0959280:intron 35.0%
GAGGGAATATGATTTGAGTA+GGG - chr6_3:75830495-75830514 Msa0959280:intron 35.0%
CGCTTGGAAAGATATAAATC+AGG - chr6_3:75830555-75830574 Msa0959280:intron 35.0%
ACACACGTAAGAATAGGTAA+CGG + chr6_3:75830604-75830623 None:intergenic 35.0%
TTGAGAACACACGTAAGAAT+AGG + chr6_3:75830610-75830629 None:intergenic 35.0%
AAAAATCTCCCCAAACGCTA+GGG + chr6_3:75826930-75826949 None:intergenic 40.0%
AAAAAATCTCCCCAAACGCT+AGG + chr6_3:75826931-75826950 None:intergenic 40.0%
CTGGGCTAATATTAAGTGGT+TGG + chr6_3:75827134-75827153 None:intergenic 40.0%
CAACCACTTAATATTAGCCC+AGG - chr6_3:75827132-75827151 Msa0959280:CDS 40.0%
CATGAGAGTAACTTGAATCC+TGG + chr6_3:75827153-75827172 None:intergenic 40.0%
GGAACCTGATATGAATACTG+CGG - chr6_3:75827290-75827309 Msa0959280:CDS 40.0%
CTCAAAAACAGAGAAACCCA+TGG - chr6_3:75827356-75827375 Msa0959280:CDS 40.0%
ATAGCACAGCAAGAGAATGA+AGG + chr6_3:75827512-75827531 None:intergenic 40.0%
!! GTGTTTCTGAAGTGCGAAAA+AGG + chr6_3:75828032-75828051 None:intergenic 40.0%
AACAATGGTCAGAGATGTTG+AGG - chr6_3:75828281-75828300 Msa0959280:CDS 40.0%
ACAATGGTCAGAGATGTTGA+GGG - chr6_3:75828282-75828301 Msa0959280:CDS 40.0%
GTATGAAGCCTCACATATGA+TGG - chr6_3:75828317-75828336 Msa0959280:CDS 40.0%
ACCATGAACCATCATATGTG+AGG + chr6_3:75828328-75828347 None:intergenic 40.0%
! ACAAATATTGGAAGAGGCGT+TGG - chr6_3:75828350-75828369 Msa0959280:CDS 40.0%
TTGCAAGAGAAGGACTCAAT+CGG + chr6_3:75828410-75828429 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_3:75828505-75828524 None:intergenic 40.0%
ACTACTCTATCTCGTGCATA+CGG + chr6_3:75828751-75828770 None:intergenic 40.0%
GTGGGATATTAATTGCTTGG+AGG - chr6_3:75829205-75829224 Msa0959280:CDS 40.0%
TAATTGCTTGGAGGATCTTC+CGG - chr6_3:75829214-75829233 Msa0959280:CDS 40.0%
ATAGTTAGCATTCAGCCATC+TGG + chr6_3:75830124-75830143 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_3:75830201-75830220 Msa0959280:CDS 40.0%
CGACAAAAGACATCTTTGAC+TGG - chr6_3:75830238-75830257 Msa0959280:CDS 40.0%
ATGCTGCTGCTATACATTGT+AGG - chr6_3:75830286-75830305 Msa0959280:CDS 40.0%
CTGCTATACATTGTAGGCTT+AGG - chr6_3:75830292-75830311 Msa0959280:intron 40.0%
AGGACATGTTTCTTCGTACT+TGG - chr6_3:75830462-75830481 Msa0959280:intron 40.0%
!! ATAGGTAACGGAACATCAGT+TGG + chr6_3:75830592-75830611 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_3:75830627-75830646 Msa0959280:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_3:75830667-75830686 Msa0959280:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_3:75826918-75826937 Msa0959280:CDS 45.0%
TGTGCCGCAGTATTCATATC+AGG + chr6_3:75827297-75827316 None:intergenic 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_3:75827523-75827542 Msa0959280:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_3:75827531-75827550 Msa0959280:intron 45.0%
CATGGACTTTACGTTTCACC+TGG - chr6_3:75827549-75827568 Msa0959280:intron 45.0%
AACCAATTCAAGGACGAGCA+AGG - chr6_3:75828246-75828265 Msa0959280:intron 45.0%
TTCCTTGCTCGTCCTTGAAT+TGG + chr6_3:75828251-75828270 None:intergenic 45.0%
GCCTCACATATGATGGTTCA+TGG - chr6_3:75828324-75828343 Msa0959280:CDS 45.0%
TGCAAGAGAAGGACTCAATC+GGG + chr6_3:75828409-75828428 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+TGG - chr6_3:75828464-75828483 Msa0959280:intron 45.0%
! TAACTTCTTGCCACTAGCCT+AGG + chr6_3:75828477-75828496 None:intergenic 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_3:75828569-75828588 Msa0959280:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_3:75828708-75828727 Msa0959280:CDS 45.0%
AGCCCCAATATTCTCAAGCA+AGG - chr6_3:75828806-75828825 Msa0959280:CDS 45.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_3:75830104-75830123 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_3:75830106-75830125 Msa0959280:CDS 45.0%
TGCATGTACTCCTCTGTTGT+TGG + chr6_3:75830150-75830169 None:intergenic 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_3:75830182-75830201 Msa0959280:CDS 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_3:75830197-75830216 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_3:75830198-75830217 None:intergenic 45.0%
GGATGAAATTGTGTCAAGCG+AGG - chr6_3:75830314-75830333 Msa0959280:intron 45.0%
!!! TTTTTTTTTTTTTTATCAAT+AGG - chr6_3:75827052-75827071 Msa0959280:CDS 5.0%
!!! ATTTTTTTTTGTTTTTAATT+TGG - chr6_3:75827606-75827625 Msa0959280:intron 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_3:75826917-75826936 Msa0959280:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_3:75826919-75826938 Msa0959280:CDS 50.0%
!!! GAGGCGTTGGCTTTTACTTC+TGG - chr6_3:75828363-75828382 Msa0959280:CDS 50.0%
TTCTGGTCACCTTGAGTCCA+TGG - chr6_3:75828380-75828399 Msa0959280:intron 50.0%
AAGAGAAGGACTCAATCGGG+TGG + chr6_3:75828406-75828425 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_3:75828457-75828476 Msa0959280:intron 50.0%
AATCTCCCCAAACGCTAGGG+TGG + chr6_3:75826927-75826946 None:intergenic 55.0%
ATCGGGTGGCCATGGACTCA+AGG + chr6_3:75828392-75828411 None:intergenic 60.0%
AGGACTCAATCGGGTGGCCA+TGG + chr6_3:75828400-75828419 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75826859 75830741 75826859 ID=Msa0959280;Name=Msa0959280
chr6_3 mRNA 75826859 75830741 75826859 ID=Msa0959280-mRNA-1;Parent=Msa0959280;Name=Msa0959280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|7|0|556
chr6_3 exon 75830625 75830741 75830625 ID=Msa0959280-mRNA-1:exon:13622;Parent=Msa0959280-mRNA-1
chr6_3 exon 75830030 75830309 75830030 ID=Msa0959280-mRNA-1:exon:13621;Parent=Msa0959280-mRNA-1
chr6_3 exon 75828990 75829362 75828990 ID=Msa0959280-mRNA-1:exon:13620;Parent=Msa0959280-mRNA-1
chr6_3 exon 75828668 75828886 75828668 ID=Msa0959280-mRNA-1:exon:13619;Parent=Msa0959280-mRNA-1
chr6_3 exon 75828257 75828395 75828257 ID=Msa0959280-mRNA-1:exon:13618;Parent=Msa0959280-mRNA-1
chr6_3 exon 75827265 75827513 75827265 ID=Msa0959280-mRNA-1:exon:13617;Parent=Msa0959280-mRNA-1
chr6_3 exon 75826859 75827152 75826859 ID=Msa0959280-mRNA-1:exon:13616;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75830625 75830741 75830625 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75830030 75830309 75830030 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75828990 75829362 75828990 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75828668 75828886 75828668 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75828257 75828395 75828257 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75827265 75827513 75827265 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
chr6_3 CDS 75826859 75827152 75826859 ID=Msa0959280-mRNA-1:cds;Parent=Msa0959280-mRNA-1
Gene Sequence

>Msa0959280

ATGTCTTCAGTAGATTACATCAATCCTAATGAGAAATCGGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGAGATTTTTTCATTCCTTATGCTTCAGAATCTATGGAACCTGATATGAATACTGCGGCACAAATTGATAAACTGAAAAAGGAGGTTAGACAAATGCTTGTCTCAAAAACAGAGAAACCCATGGAAAAAGTCAACTTGATTGATTCAATATGTCGTTTGGGTGTGAGCTATCATTTTGAAGACGAAATTAATCAAGTTTTGGAACATATTTACAAGAGTTATGTTCAAAATGGAGAAATAACTCTCAAAGACAACCTTCATTCTCTTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGACTTTACGTTTCACCTGATGTGTTCAACCAATTCAAGGACGAGCAAGGAAACTTCAGTGAAACAATGGTCAGAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAACAAATATTGGAAGAGGCGTTGGCTTTTACTTCTGGTCACCTTGAGTCCATGGCCACCCGATTGAGTCCTTCTCTTGCAACACAAGTAAAACAAAGCTTAAGACAATCTCTGCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTAGCAAGTGGTGGAAGGAGTTGGATATTGCTCAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACCGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACTCAGGCAATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACACGAAGTTGCTTTATAAATCACTCTTGGATGTTTATCAAGAGATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCATTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATGCTAACTATATACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCGACAAAAGACATCTTTGACTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATACATTGTAGGCTTAGGGATGAAATTGTGTCAAGCGAGTTTGAGCAGAAAAGAGGACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATTTGAGTAGGGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATAAATCAGGAATGTCTTAAGCCAACTGATGTTCCGTTACCTATTCTTACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGATTGATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTAGAAATTTGA
Protein sequence

>Msa0959280

MSSVDYINPNEKSVLQRNVADFHPSVWGDFFIPYASESMEPDMNTAAQIDKLKKEVRQMLVSKTEKPMEKVNLIDSICRLGVSYHFEDEINQVLEHIYKSYVQNGEITLKDNLHSLAVLFRVLRQHGLYVSPDVFNQFKDEQGNFSETMVRDVEGMLNLYEASHMMVHGEQILEEALAFTSGHLESMATRLSPSLATQVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTQAIERWDINCLEDLPDYTKLLYKSLLDVYQEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYIPTTEEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKRGHVSSYLECYMREYDLSREAAIQECQKKIDNAWKDINQECLKPTDVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*