AlfalfaGEDB | Msa1001210

M. sativa cultivar zhongmu-4 / Msa1001210

KEGG: K01904
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663
PFAM: PF00501.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1001210	XP_024637900.2	88.494	478	17	2	1	442	1	476	0.0	825

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1001210	sp\|Q84P24\|4CLL6_ARATH	55.720	472	166	5	15	445	11	480	4.89e-175	505

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1001210	A0A396I7Z5	88.494	478	17	2	1	442	1	476	0.0	825

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0053650	Msa1001210	0.811719	6.083052e-51	-8.615850e-47
Msa0089150	Msa1001210	-0.805567	1.254293e-49	-8.615850e-47
Msa0304270	Msa1001210	-0.807131	5.870917e-50	-8.615850e-47
Msa0331590	Msa1001210	0.809986	1.442367e-50	-8.615850e-47
Msa0431250	Msa1001210	0.804190	2.432590e-49	-8.615850e-47
Msa0509020	Msa1001210	0.820934	5.276144e-53	-8.615850e-47
Msa0544930	Msa1001210	0.814596	1.421416e-51	-8.615850e-47
Msa0563140	Msa1001210	0.808999	2.350203e-50	-8.615850e-47
Msa0612840	Msa1001210	-0.826073	3.313757e-54	-8.615850e-47
Msa0641020	Msa1001210	0.834453	2.970750e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1001210	MtrunA17_Chr4g0039791	88.494	478	17	2	1	442	1	476	0.0	825
Msa1001210	MtrunA17_Chr5g0409771	71.941	474	91	3	5	442	3	470	0.0	686
Msa1001210	MtrunA17_Chr5g0409791	70.122	492	94	3	6	449	4	490	0.0	670
Msa1001210	MtrunA17_Chr1g0157401	38.696	460	235	6	26	442	20	475	2.54e-106	326
Msa1001210	MtrunA17_Chr8g0353341	38.841	466	232	6	26	442	17	478	1.12e-105	323
Msa1001210	MtrunA17_Chr4g0028411	37.307	453	234	9	31	440	10	455	4.03e-89	281
Msa1001210	MtrunA17_Chr1g0197391	37.879	462	235	10	26	442	27	481	1.31e-86	275
Msa1001210	MtrunA17_Chr3g0116251	35.366	410	234	6	64	445	68	474	3.60e-82	263
Msa1001210	MtrunA17_Chr1g0180551	35.054	465	247	7	26	440	75	534	2.39e-81	263
Msa1001210	MtrunA17_Chr2g0327341	35.153	458	244	9	31	445	10	457	2.84e-81	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1001210	AT4G19010.1	55.720	472	166	5	15	445	11	480	4.97e-176	505
Msa1001210	AT1G20510.2	39.955	448	226	5	33	442	17	459	5.66e-112	338
Msa1001210	AT1G20510.1	39.955	448	226	5	33	442	17	459	5.77e-111	338
Msa1001210	AT1G20510.3	39.545	440	223	5	33	434	17	451	1.27e-107	327
Msa1001210	AT1G20480.1	36.147	462	242	5	26	442	27	480	2.53e-100	311
Msa1001210	AT1G20500.1	36.443	461	247	6	21	442	12	465	3.36e-99	308
Msa1001210	AT5G38120.4	35.991	464	244	8	21	442	13	465	1.49e-92	288
Msa1001210	AT5G38120.2	35.991	464	244	8	21	442	13	465	1.49e-92	288
Msa1001210	AT5G38120.3	35.991	464	244	8	21	442	13	465	5.67e-92	288
Msa1001210	AT5G38120.1	35.991	464	244	8	21	442	13	465	1.33e-91	288

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Find 90 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATACACATGAAACAT+TGG	0.533547	6_4:+84936029	None:intergenic
AAAGACATTATCAAATACAA+GGG	0.615550	6_4:-84934228	Msa1001210:CDS
AAAGATGGTTGGCTACACAC+AGG	0.679404	6_4:-84934303	Msa1001210:CDS
AAAGCTCACCGCAGCTGCCT+GGG	0.370228	6_4:+84934992	None:intergenic
AAAGTGGTAGACTGGAACAA+TGG	0.541163	6_4:-84935027	Msa1001210:CDS
AACAGCTAGAAACACACACT+TGG	0.579086	6_4:+84936055	None:intergenic
AAGAAACTAGAGCTATTAGG+TGG	0.680245	6_4:-84936334	Msa1001210:CDS
AAGCTCACCGCAGCTGCCTG+GGG	0.478646	6_4:+84934993	None:intergenic
AAGGAAACAATGTCAAGAAA+AGG	0.413052	6_4:+84936667	None:intergenic
AATCAACGTTAGGGAAAGCA+TGG	0.550452	6_4:+84935763	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGGTATTCATCAAAAAC+TGG	-	chr6_4:84934128-84934147	Msa1001210:intron	30.0%
AGGAAACAATGTCAAGAAAA+GGG	+	chr6_4:84934196-84934215	None:intergenic	30.0%
AAGGAAACAATGTCAAGAAA+AGG	+	chr6_4:84934197-84934216	None:intergenic	30.0%
TGTTTAATAACTACCCTTTG+AGG	+	chr6_4:84934649-84934668	None:intergenic	30.0%
TCAAAGGGTAGTTATTAAAC+AGG	-	chr6_4:84934648-84934667	Msa1001210:intron	30.0%
CTGGTATATTGTATTCATCT+GGG	-	chr6_4:84934680-84934699	Msa1001210:intron	30.0%
AAACCATACACATGAAACAT+TGG	+	chr6_4:84934835-84934854	None:intergenic	30.0%
TTGACATTGATGAGGTTATT+AGG	-	chr6_4:84934914-84934933	Msa1001210:intron	30.0%
TGACATTGATGAGGTTATTA+GGG	-	chr6_4:84934915-84934934	Msa1001210:intron	30.0%
CCTGTATAAAATCAACGTTA+GGG	+	chr6_4:84935110-84935129	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	84934059	84936824	84934059	ID=Msa1001210;Name=Msa1001210
chr6_4	mRNA	84934059	84936824	84934059	ID=Msa1001210-mRNA-1;Parent=Msa1001210;Name=Msa1001210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.5\|0.2\|1\|1\|1\|5\|0\|449
chr6_4	exon	84936281	84936824	84936281	ID=Msa1001210-mRNA-1:exon:16612;Parent=Msa1001210-mRNA-1
chr6_4	exon	84935755	84936173	84935755	ID=Msa1001210-mRNA-1:exon:16611;Parent=Msa1001210-mRNA-1
chr6_4	exon	84934965	84935154	84934965	ID=Msa1001210-mRNA-1:exon:16610;Parent=Msa1001210-mRNA-1
chr6_4	exon	84934221	84934366	84934221	ID=Msa1001210-mRNA-1:exon:16609;Parent=Msa1001210-mRNA-1
chr6_4	exon	84934059	84934109	84934059	ID=Msa1001210-mRNA-1:exon:16608;Parent=Msa1001210-mRNA-1
chr6_4	CDS	84936281	84936824	84936281	ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1
chr6_4	CDS	84935755	84936173	84935755	ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1
chr6_4	CDS	84934965	84935154	84934965	ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1
chr6_4	CDS	84934221	84934366	84934221	ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1
chr6_4	CDS	84934059	84934109	84934059	ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1

Gene Sequence

>Msa1001210

ATGGCTTCTACTGCAAATTTAAACTGTGAAATCACCCAAAACAACATGATCACTCAACACCCTCACCCTCATTGGTATTCATCAAAAACTGGAATTTACAACAGTATACACACTCCTAGAAATCTTCCAACTGACCCTTTTCTTGACATTGTTTCCTTCATTTTTTCACACCCTCATGATGGGGTTTTAGCCCTTATTGATTCTTCATCTGGGTCTTCCATTTCTTTCTCAAAGTTGTTACCTTTAGTCAAATCCATGGCTTCTGCTTTACACAAAATGGGTGTTTCACAAGGTGATGTTGTTTTGCTTCAACTTCCAAATTCAATTTATTACCCTGTTATACTATTGGCTGTTCTGTATTTAGGTGCTGTTTTTACACCATTGAATCCTCTTAGTAGTGTTGGCGAAATTCGTAAACAGGTTCAAGAGTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTCAAGAAACTAGAGCTATTAGGTGGCATTAATCCCATTGTTGCTGTGCCAGAAAATGAGAAGGATTTGAGGAATGAGTGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTTCTATGGTTGAGCTTTTTGTGAGATTTGAAGCTTCTCAATATGATTACTCTTGTTCCAAGTGTGTGTTTCTAGCTGTTTTGCCAATGTTTCATGTGTATGGTTTATCGCTCTTTGCTGCGGGATTATTGTCGTTGGGCTCTACAGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATTAGGGTGATTGACAAATATAATGTTACACACTTTTCTGTTGTTCCACCGATGTTGTCGGCATTGACAATGAAGGCAAAGGGTGTTACTGGAAGTAAGTTGCAGAGTTTGAGACAGGTCTCTTGCGGTGCAGCGCCTTTGAGCATAGGAGTTATTAGTAGTTTTGTCCATGCTTTCCCTAACGTTGATTTTATACAGGGTTGTGGAATGACTGAGTCGACTGCAGTGGGAACACGTGGCTTCAATACTGAAAAGATTCACAACTATTCGTCAATAGGGTTGTTGGCTCCAAACACGGAGGCAAAAGTGGTAGACTGGAACAATGGTACTTTTTTGCCCCCAGGCAGCTGCGGTGAGCTTTGGTTGAGAGGGCCTTCTATTATGAGAGGATACTTGAATAATGAGGAAGCTACTATATCAATAATTGATAAAGATGGTTGGCTACACACAGGAGATATTGTTTATTTTGATCAGGATGGATATTTACATTTGGCTGATCGCTTGAAAGACATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATCTAAAAGCTGTCTGTAACAGCAGGAGCAATCTGTAA

Protein sequence

>Msa1001210

MASTANLNCEITQNNMITQHPHPHWYSSKTGIYNSIHTPRNLPTDPFLDIVSFIFSHPHDGVLALIDSSSGSSISFSKLLPLVKSMASALHKMGVSQGDVVLLQLPNSIYYPVILLAVLYLGAVFTPLNPLSSVGEIRKQVQECGVSFAFTIPENVKKLELLGGINPIVAVPENEKDLRNECVSKGVVLTHRNLISMVELFVRFEASQYDYSCSKCVFLAVLPMFHVYGLSLFAAGLLSLGSTVIVMRKFDIDEVIRVIDKYNVTHFSVVPPMLSALTMKAKGVTGSKLQSLRQVSCGAAPLSIGVISSFVHAFPNVDFIQGCGMTESTAVGTRGFNTEKIHNYSSIGLLAPNTEAKVVDWNNGTFLPPGSCGELWLRGPSIMRGYLNNEEATISIIDKDGWLHTGDIVYFDQDGYLHLADRLKDIIKYKGFQIAPADLKAVCNSRSNL*