Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001210 | XP_024637900.2 | 88.494 | 478 | 17 | 2 | 1 | 442 | 1 | 476 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001210 | sp|Q84P24|4CLL6_ARATH | 55.720 | 472 | 166 | 5 | 15 | 445 | 11 | 480 | 4.89e-175 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001210 | A0A396I7Z5 | 88.494 | 478 | 17 | 2 | 1 | 442 | 1 | 476 | 0.0 | 825 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053650 | Msa1001210 | 0.811719 | 6.083052e-51 | -8.615850e-47 |
| Msa0089150 | Msa1001210 | -0.805567 | 1.254293e-49 | -8.615850e-47 |
| Msa0612840 | Msa1001210 | -0.826073 | 3.313757e-54 | -8.615850e-47 |
| Msa0641020 | Msa1001210 | 0.834453 | 2.970750e-56 | -8.615850e-47 |
| Msa0641030 | Msa1001210 | 0.812678 | 3.756762e-51 | -8.615850e-47 |
| Msa0645460 | Msa1001210 | 0.816063 | 6.708242e-52 | -8.615850e-47 |
| Msa0679560 | Msa1001210 | 0.832008 | 1.207418e-55 | -8.615850e-47 |
| Msa0431250 | Msa1001210 | 0.804190 | 2.432590e-49 | -8.615850e-47 |
| Msa1001200 | Msa1001210 | 0.850567 | 1.561911e-60 | -8.615850e-47 |
| Msa1001210 | Msa1008340 | 0.800262 | 1.565007e-48 | -8.615850e-47 |
| Msa1001210 | Msa1080790 | 0.802977 | 4.342746e-49 | -8.615850e-47 |
| Msa1001210 | Msa1083410 | 0.802769 | 4.793926e-49 | -8.615850e-47 |
| Msa1001210 | Msa1101620 | 0.812314 | 4.512658e-51 | -8.615850e-47 |
| Msa1001210 | Msa1108780 | 0.801245 | 9.860923e-49 | -8.615850e-47 |
| Msa1001210 | Msa1129010 | -0.817854 | 2.657501e-52 | -8.615850e-47 |
| Msa1001210 | Msa1190460 | 0.803632 | 3.177342e-49 | -8.615850e-47 |
| Msa1001210 | Msa1209560 | 0.834287 | 3.270828e-56 | -8.615850e-47 |
| Msa1001210 | Msa1244300 | 0.824722 | 6.919476e-54 | -8.615850e-47 |
| Msa1001210 | Msa1246040 | 0.840440 | 8.683893e-58 | -8.615850e-47 |
| Msa1001210 | Msa1298910 | 0.821618 | 3.668553e-53 | -8.615850e-47 |
| Msa1001210 | Msa1330530 | 0.829013 | 6.528127e-55 | -8.615850e-47 |
| Msa1001210 | Msa1445250 | 0.841173 | 5.579232e-58 | -8.615850e-47 |
| Msa0304270 | Msa1001210 | -0.807131 | 5.870917e-50 | -8.615850e-47 |
| Msa0331590 | Msa1001210 | 0.809986 | 1.442367e-50 | -8.615850e-47 |
| Msa0509020 | Msa1001210 | 0.820934 | 5.276144e-53 | -8.615850e-47 |
| Msa0544930 | Msa1001210 | 0.814596 | 1.421416e-51 | -8.615850e-47 |
| Msa0563140 | Msa1001210 | 0.808999 | 2.350203e-50 | -8.615850e-47 |
| Msa0886660 | Msa1001210 | 0.808498 | 3.006705e-50 | -8.615850e-47 |
| Msa0901190 | Msa1001210 | 0.887846 | 9.962435e-73 | -8.615850e-47 |
| Msa0912210 | Msa1001210 | 0.804156 | 2.473306e-49 | -8.615850e-47 |
| Msa0912230 | Msa1001210 | 0.800841 | 1.192567e-48 | -8.615850e-47 |
| Msa0912470 | Msa1001210 | 0.839944 | 1.169839e-57 | -8.615850e-47 |
| Msa0925990 | Msa1001210 | 0.864320 | 1.323449e-64 | -8.615850e-47 |
| Msa0966540 | Msa1001210 | 0.848357 | 6.453105e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001210 | MtrunA17_Chr4g0039791 | 88.494 | 478 | 17 | 2 | 1 | 442 | 1 | 476 | 0.0 | 825 |
| Msa1001210 | MtrunA17_Chr5g0409771 | 71.941 | 474 | 91 | 3 | 5 | 442 | 3 | 470 | 0.0 | 686 |
| Msa1001210 | MtrunA17_Chr5g0409791 | 70.122 | 492 | 94 | 3 | 6 | 449 | 4 | 490 | 0.0 | 670 |
| Msa1001210 | MtrunA17_Chr1g0157401 | 38.696 | 460 | 235 | 6 | 26 | 442 | 20 | 475 | 2.54e-106 | 326 |
| Msa1001210 | MtrunA17_Chr8g0353341 | 38.841 | 466 | 232 | 6 | 26 | 442 | 17 | 478 | 1.12e-105 | 323 |
| Msa1001210 | MtrunA17_Chr4g0028411 | 37.307 | 453 | 234 | 9 | 31 | 440 | 10 | 455 | 4.03e-89 | 281 |
| Msa1001210 | MtrunA17_Chr1g0197391 | 37.879 | 462 | 235 | 10 | 26 | 442 | 27 | 481 | 1.31e-86 | 275 |
| Msa1001210 | MtrunA17_Chr3g0116251 | 35.366 | 410 | 234 | 6 | 64 | 445 | 68 | 474 | 3.60e-82 | 263 |
| Msa1001210 | MtrunA17_Chr1g0180551 | 35.054 | 465 | 247 | 7 | 26 | 440 | 75 | 534 | 2.39e-81 | 263 |
| Msa1001210 | MtrunA17_Chr2g0327341 | 35.153 | 458 | 244 | 9 | 31 | 445 | 10 | 457 | 2.84e-81 | 260 |
| Msa1001210 | MtrunA17_Chr3g0116271 | 36.038 | 419 | 230 | 9 | 64 | 449 | 67 | 480 | 3.63e-81 | 261 |
| Msa1001210 | MtrunA17_Chr1g0180541 | 34.632 | 462 | 249 | 8 | 26 | 440 | 6 | 461 | 7.72e-79 | 254 |
| Msa1001210 | MtrunA17_Chr1g0186071 | 34.293 | 417 | 230 | 10 | 65 | 449 | 74 | 478 | 6.76e-68 | 226 |
| Msa1001210 | MtrunA17_Chr4g0072561 | 33.645 | 428 | 234 | 9 | 65 | 449 | 50 | 470 | 4.27e-62 | 211 |
| Msa1001210 | MtrunA17_Chr3g0102411 | 30.303 | 462 | 278 | 9 | 26 | 449 | 8 | 463 | 7.66e-61 | 207 |
| Msa1001210 | MtrunA17_Chr4g0000461 | 34.744 | 449 | 240 | 12 | 36 | 442 | 19 | 456 | 2.28e-59 | 203 |
| Msa1001210 | MtrunA17_Chr5g0395431 | 32.783 | 424 | 244 | 9 | 65 | 449 | 88 | 509 | 1.85e-58 | 201 |
| Msa1001210 | MtrunA17_Chr1g0157431 | 34.627 | 335 | 172 | 6 | 26 | 317 | 20 | 350 | 4.27e-54 | 189 |
| Msa1001210 | MtrunA17_Chr2g0334131 | 43.216 | 199 | 109 | 3 | 247 | 442 | 1 | 198 | 3.54e-44 | 156 |
| Msa1001210 | MtrunA17_Chr6g0471921 | 29.343 | 426 | 217 | 17 | 74 | 442 | 32 | 430 | 2.06e-29 | 120 |
| Msa1001210 | MtrunA17_Chr5g0433241 | 30.147 | 272 | 161 | 11 | 185 | 442 | 203 | 459 | 1.99e-21 | 97.1 |
| Msa1001210 | MtrunA17_Chr6g0471311 | 28.889 | 270 | 168 | 7 | 185 | 442 | 205 | 462 | 6.15e-21 | 95.5 |
| Msa1001210 | MtrunA17_Chr5g0433231 | 28.889 | 270 | 168 | 9 | 185 | 442 | 203 | 460 | 1.73e-20 | 94.0 |
| Msa1001210 | MtrunA17_Chr3g0109731 | 28.369 | 282 | 162 | 9 | 185 | 445 | 203 | 465 | 5.14e-20 | 92.8 |
| Msa1001210 | MtrunA17_Chr2g0292471 | 24.714 | 437 | 249 | 12 | 77 | 442 | 31 | 458 | 1.09e-18 | 88.6 |
| Msa1001210 | MtrunA17_Chr5g0433221 | 28.889 | 270 | 168 | 8 | 185 | 442 | 203 | 460 | 1.88e-18 | 87.8 |
| Msa1001210 | MtrunA17_Chr3g0121931 | 34.184 | 196 | 109 | 7 | 269 | 449 | 423 | 613 | 1.30e-16 | 82.4 |
| Msa1001210 | MtrunA17_Chr1g0205711 | 27.244 | 312 | 161 | 11 | 185 | 444 | 274 | 571 | 1.71e-16 | 82.0 |
| Msa1001210 | MtrunA17_Chr3g0124631 | 34.810 | 158 | 90 | 6 | 280 | 430 | 414 | 565 | 2.06e-15 | 78.6 |
| Msa1001210 | MtrunA17_Chr1g0160041 | 37.143 | 140 | 78 | 5 | 298 | 430 | 427 | 563 | 4.87e-15 | 77.4 |
| Msa1001210 | MtrunA17_Chr8g0377991 | 32.768 | 177 | 92 | 6 | 275 | 440 | 448 | 608 | 1.09e-14 | 76.6 |
| Msa1001210 | MtrunA17_Chr4g0028451 | 51.786 | 56 | 27 | 0 | 385 | 440 | 10 | 65 | 1.86e-14 | 69.3 |
| Msa1001210 | MtrunA17_Chr3g0121951 | 33.333 | 198 | 108 | 8 | 269 | 449 | 419 | 609 | 2.83e-14 | 75.1 |
| Msa1001210 | MtrunA17_Chr3g0120731 | 34.014 | 147 | 87 | 5 | 291 | 430 | 452 | 595 | 3.79e-13 | 71.6 |
| Msa1001210 | MtrunA17_Chr5g0396711 | 25.000 | 292 | 164 | 8 | 185 | 428 | 238 | 522 | 2.69e-11 | 65.9 |
| Msa1001210 | MtrunA17_Chr4g0004101 | 25.532 | 235 | 153 | 7 | 226 | 442 | 10 | 240 | 4.61e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001210 | AT4G19010.1 | 55.720 | 472 | 166 | 5 | 15 | 445 | 11 | 480 | 4.97e-176 | 505 |
| Msa1001210 | AT1G20510.2 | 39.955 | 448 | 226 | 5 | 33 | 442 | 17 | 459 | 5.66e-112 | 338 |
| Msa1001210 | AT1G20510.1 | 39.955 | 448 | 226 | 5 | 33 | 442 | 17 | 459 | 5.77e-111 | 338 |
| Msa1001210 | AT1G20510.3 | 39.545 | 440 | 223 | 5 | 33 | 434 | 17 | 451 | 1.27e-107 | 327 |
| Msa1001210 | AT1G20480.1 | 36.147 | 462 | 242 | 5 | 26 | 442 | 27 | 480 | 2.53e-100 | 311 |
| Msa1001210 | AT1G20500.1 | 36.443 | 461 | 247 | 6 | 21 | 442 | 12 | 465 | 3.36e-99 | 308 |
| Msa1001210 | AT5G38120.4 | 35.991 | 464 | 244 | 8 | 21 | 442 | 13 | 465 | 1.49e-92 | 288 |
| Msa1001210 | AT5G38120.2 | 35.991 | 464 | 244 | 8 | 21 | 442 | 13 | 465 | 1.49e-92 | 288 |
| Msa1001210 | AT5G38120.3 | 35.991 | 464 | 244 | 8 | 21 | 442 | 13 | 465 | 5.67e-92 | 288 |
| Msa1001210 | AT5G38120.1 | 35.991 | 464 | 244 | 8 | 21 | 442 | 13 | 465 | 1.33e-91 | 288 |
| Msa1001210 | AT4G05160.1 | 36.069 | 463 | 250 | 6 | 29 | 449 | 8 | 466 | 3.58e-89 | 281 |
| Msa1001210 | AT5G63380.1 | 34.755 | 469 | 256 | 11 | 26 | 449 | 17 | 480 | 3.39e-86 | 274 |
| Msa1001210 | AT1G20490.2 | 35.529 | 425 | 226 | 7 | 21 | 404 | 12 | 429 | 1.18e-81 | 259 |
| Msa1001210 | AT1G20490.1 | 35.529 | 425 | 226 | 7 | 21 | 404 | 12 | 429 | 1.18e-81 | 259 |
| Msa1001210 | AT3G21240.2 | 33.613 | 476 | 265 | 10 | 11 | 442 | 1 | 469 | 1.33e-68 | 226 |
| Msa1001210 | AT3G21240.3 | 33.613 | 476 | 265 | 10 | 11 | 442 | 1 | 469 | 1.33e-68 | 226 |
| Msa1001210 | AT3G21240.1 | 33.613 | 476 | 265 | 10 | 11 | 442 | 1 | 469 | 3.62e-68 | 227 |
| Msa1001210 | AT1G65060.1 | 34.335 | 466 | 246 | 11 | 21 | 442 | 30 | 479 | 1.03e-63 | 215 |
| Msa1001210 | AT1G65060.2 | 34.348 | 460 | 242 | 11 | 21 | 436 | 30 | 473 | 4.88e-62 | 209 |
| Msa1001210 | AT3G21230.2 | 32.158 | 482 | 273 | 9 | 7 | 442 | 10 | 483 | 2.73e-61 | 207 |
| Msa1001210 | AT3G21230.3 | 32.158 | 482 | 273 | 9 | 7 | 442 | 10 | 483 | 6.76e-61 | 207 |
| Msa1001210 | AT3G21230.1 | 32.158 | 482 | 273 | 9 | 7 | 442 | 10 | 483 | 9.42e-61 | 207 |
| Msa1001210 | AT1G51680.2 | 35.545 | 422 | 226 | 7 | 65 | 442 | 57 | 476 | 1.83e-60 | 205 |
| Msa1001210 | AT1G51680.3 | 35.545 | 422 | 226 | 7 | 65 | 442 | 57 | 476 | 4.10e-60 | 205 |
| Msa1001210 | AT1G51680.1 | 35.545 | 422 | 226 | 7 | 65 | 442 | 57 | 476 | 6.60e-60 | 205 |
| Msa1001210 | AT1G62940.1 | 32.701 | 422 | 233 | 10 | 63 | 442 | 43 | 455 | 7.20e-57 | 197 |
| Msa1001210 | AT3G21230.4 | 28.471 | 425 | 250 | 9 | 7 | 385 | 10 | 426 | 5.41e-33 | 130 |
| Msa1001210 | AT3G48990.1 | 27.628 | 409 | 248 | 12 | 73 | 442 | 30 | 429 | 8.16e-29 | 119 |
| Msa1001210 | AT1G77240.1 | 32.472 | 271 | 158 | 9 | 185 | 442 | 201 | 459 | 2.33e-24 | 106 |
| Msa1001210 | AT1G21530.2 | 30.370 | 270 | 165 | 7 | 185 | 442 | 200 | 458 | 6.86e-24 | 104 |
| Msa1001210 | AT1G21540.1 | 30.545 | 275 | 158 | 9 | 185 | 442 | 203 | 461 | 4.81e-23 | 102 |
| Msa1001210 | AT1G21530.1 | 29.893 | 281 | 150 | 9 | 185 | 442 | 200 | 456 | 1.12e-22 | 101 |
| Msa1001210 | AT5G16370.1 | 24.706 | 425 | 233 | 14 | 86 | 442 | 53 | 458 | 4.16e-20 | 93.2 |
| Msa1001210 | AT5G27600.1 | 28.803 | 309 | 153 | 11 | 185 | 442 | 277 | 569 | 2.74e-17 | 85.1 |
| Msa1001210 | AT1G66120.1 | 28.413 | 271 | 170 | 9 | 185 | 442 | 202 | 461 | 2.94e-17 | 84.7 |
| Msa1001210 | AT1G75960.1 | 29.562 | 274 | 162 | 11 | 185 | 442 | 200 | 458 | 4.97e-17 | 84.0 |
| Msa1001210 | AT3G05970.1 | 27.327 | 333 | 178 | 11 | 163 | 442 | 248 | 569 | 2.02e-15 | 79.3 |
| Msa1001210 | AT1G77590.2 | 35.443 | 158 | 89 | 6 | 280 | 430 | 262 | 413 | 3.27e-15 | 78.2 |
| Msa1001210 | AT1G77590.1 | 35.443 | 158 | 89 | 6 | 280 | 430 | 408 | 559 | 4.90e-15 | 78.2 |
| Msa1001210 | AT1G30520.2 | 25.806 | 279 | 174 | 9 | 185 | 442 | 188 | 454 | 3.52e-14 | 75.1 |
| Msa1001210 | AT1G30520.1 | 25.806 | 279 | 174 | 9 | 185 | 442 | 188 | 454 | 3.52e-14 | 75.1 |
| Msa1001210 | AT3G23790.1 | 34.194 | 155 | 85 | 6 | 307 | 449 | 465 | 614 | 4.82e-14 | 75.1 |
| Msa1001210 | AT3G16170.1 | 26.978 | 278 | 169 | 11 | 185 | 442 | 250 | 513 | 1.35e-13 | 73.2 |
| Msa1001210 | AT1G30520.3 | 25.362 | 276 | 173 | 9 | 185 | 439 | 188 | 451 | 4.15e-13 | 71.6 |
| Msa1001210 | AT1G30520.4 | 25.362 | 276 | 173 | 9 | 185 | 439 | 188 | 451 | 4.15e-13 | 71.6 |
Find 90 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTGCTTTACACAAAA+TGG | 0.138296 | 6_4:-84936545 | Msa1001210:CDS |
| CTATTGGCTGTTCTGTATTT+AGG | 0.170770 | 6_4:-84936460 | Msa1001210:CDS |
| TTGACATTGATGAGGTTATT+AGG | 0.176901 | 6_4:-84935947 | Msa1001210:CDS |
| ACAGGGTAATAAATTGAATT+TGG | 0.183276 | 6_4:+84936487 | None:intergenic |
| GCCCTTATTGATTCTTCATC+TGG | 0.217618 | 6_4:-84936613 | Msa1001210:CDS |
| TATCAAATACAAGGGATTTC+AGG | 0.243292 | 6_4:-84934220 | Msa1001210:intron |
| GTTGAGTGATCATGTTGTTT+TGG | 0.245364 | 6_4:+84936767 | None:intergenic |
| TCATAGAAATCTTATTTCTA+TGG | 0.256021 | 6_4:-84936126 | Msa1001210:CDS |
| GGGTCAGTTGGAAGATTTCT+AGG | 0.289970 | 6_4:+84936688 | None:intergenic |
| ATTCACAACTATTCGTCAAT+AGG | 0.296417 | 6_4:-84935075 | Msa1001210:CDS |
| TTATTACCCTGTTATACTAT+TGG | 0.314296 | 6_4:-84936476 | Msa1001210:CDS |
| AGAACAGCCAATAGTATAAC+AGG | 0.320104 | 6_4:+84936469 | None:intergenic |
| TGACATTGATGAGGTTATTA+GGG | 0.322063 | 6_4:-84935946 | Msa1001210:CDS |
| CAGGCAGCTGCGGTGAGCTT+TGG | 0.328932 | 6_4:-84934990 | Msa1001210:CDS |
| CAAAGCTCACCGCAGCTGCC+TGG | 0.332403 | 6_4:+84934991 | None:intergenic |
| ATGAAGGCAAAGGGTGTTAC+TGG | 0.333041 | 6_4:-84935861 | Msa1001210:CDS |
| TTGCCAATGTTTCATGTGTA+TGG | 0.342668 | 6_4:-84936032 | Msa1001210:CDS |
| ACCCAGATGAAGAATCAATA+AGG | 0.350199 | 6_4:+84936611 | None:intergenic |
| AAAGCTCACCGCAGCTGCCT+GGG | 0.370228 | 6_4:+84934992 | None:intergenic |
| ACCTGTATAAAATCAACGTT+AGG | 0.376743 | 6_4:+84935753 | None:intergenic |
| TGCTGCGGGATTATTGTCGT+TGG | 0.401502 | 6_4:-84935997 | Msa1001210:CDS |
| TTCACAACTATTCGTCAATA+GGG | 0.405454 | 6_4:-84935074 | Msa1001210:CDS |
| TGTTGTTCCACCGATGTTGT+CGG | 0.411176 | 6_4:-84935892 | Msa1001210:CDS |
| TGTTGGCGAAATTCGTAAAC+AGG | 0.412030 | 6_4:-84936404 | Msa1001210:CDS |
| AAGGAAACAATGTCAAGAAA+AGG | 0.413052 | 6_4:+84936667 | None:intergenic |
| CCCTTATTGATTCTTCATCT+GGG | 0.414327 | 6_4:-84936612 | Msa1001210:CDS |
| TCAGGATGGATATTTACATT+TGG | 0.418131 | 6_4:-84934262 | Msa1001210:CDS |
| GTCAAGAAACTAGAGCTATT+AGG | 0.418468 | 6_4:-84936337 | Msa1001210:CDS |
| CTATTCGTCAATAGGGTTGT+TGG | 0.424322 | 6_4:-84935067 | Msa1001210:CDS |
| GGTTTATCGCTCTTTGCTGC+GGG | 0.430597 | 6_4:-84936011 | Msa1001210:CDS |
| CAGAAAATGAGAAGGATTTG+AGG | 0.445513 | 6_4:-84936288 | Msa1001210:CDS |
| GCTGCGGGATTATTGTCGTT+GGG | 0.447735 | 6_4:-84935996 | Msa1001210:CDS |
| CTCAACACCCTCACCCTCAT+TGG | 0.448612 | 6_4:-84936750 | Msa1001210:CDS |
| TAACAACTTTGAGAAAGAAA+TGG | 0.452314 | 6_4:+84936585 | None:intergenic |
| TGCGGTGAGCTTTGGTTGAG+AGG | 0.454034 | 6_4:-84934982 | Msa1001210:CDS |
| GCTTCTGCTTTACACAAAAT+GGG | 0.455667 | 6_4:-84936544 | Msa1001210:CDS |
| CCCAGATGAAGAATCAATAA+GGG | 0.467167 | 6_4:+84936612 | None:intergenic |
| AAGCTCACCGCAGCTGCCTG+GGG | 0.478646 | 6_4:+84934993 | None:intergenic |
| GGTGCAGCGCCTTTGAGCAT+AGG | 0.486009 | 6_4:-84935804 | Msa1001210:CDS |
| ATTTCGCCAACACTACTAAG+AGG | 0.489624 | 6_4:+84936415 | None:intergenic |
| CACAAAATGGGTGTTTCACA+AGG | 0.502968 | 6_4:-84936532 | Msa1001210:CDS |
| TGGTTTATCGCTCTTTGCTG+CGG | 0.507976 | 6_4:-84936012 | Msa1001210:CDS |
| TAAGTTGCAGAGTTTGAGAC+AGG | 0.511530 | 6_4:-84935835 | Msa1001210:CDS |
| CGGAGGCAAAAGTGGTAGAC+TGG | 0.515561 | 6_4:-84935035 | Msa1001210:CDS |
| GCGGTGAGCTTTGGTTGAGA+GGG | 0.517348 | 6_4:-84934981 | Msa1001210:CDS |
| TTGAATCCTCTTAGTAGTGT+TGG | 0.520706 | 6_4:-84936421 | Msa1001210:CDS |
| AGGAAACAATGTCAAGAAAA+GGG | 0.521407 | 6_4:+84936668 | None:intergenic |
| ATGTCAAGAAAAGGGTCAGT+TGG | 0.533509 | 6_4:+84936676 | None:intergenic |
| AAACCATACACATGAAACAT+TGG | 0.533547 | 6_4:+84936029 | None:intergenic |
| TCCAAACACGGAGGCAAAAG+TGG | 0.534472 | 6_4:-84935043 | Msa1001210:CDS |
| ATATCAATAATTGATAAAGA+TGG | 0.536510 | 6_4:-84934318 | Msa1001210:CDS |
| GAAGCCATGGATTTGACTAA+AGG | 0.537715 | 6_4:+84936562 | None:intergenic |
| GTTACCTTTAGTCAAATCCA+TGG | 0.539728 | 6_4:-84936566 | Msa1001210:CDS |
| AAAGTGGTAGACTGGAACAA+TGG | 0.541163 | 6_4:-84935027 | Msa1001210:CDS |
| CTCAGGATACTTGAATAATG+AGG | 0.541417 | 6_4:-84934349 | Msa1001210:intron |
| ACACTACTAAGAGGATTCAA+TGG | 0.545729 | 6_4:+84936424 | None:intergenic |
| AATCAACGTTAGGGAAAGCA+TGG | 0.550452 | 6_4:+84935763 | None:intergenic |
| GAAAGACATTATCAAATACA+AGG | 0.550958 | 6_4:-84934229 | Msa1001210:CDS |
| TAAAAGCTGTCTGTAACAGC+AGG | 0.551063 | 6_4:-84934071 | Msa1001210:CDS |
| TTTGTGTAAAGCAGAAGCCA+TGG | 0.560434 | 6_4:+84936549 | None:intergenic |
| CCTGTATAAAATCAACGTTA+GGG | 0.562718 | 6_4:+84935754 | None:intergenic |
| GGCATTGACAATGAAGGCAA+AGG | 0.569984 | 6_4:-84935871 | Msa1001210:CDS |
| GCATTGACAATGAAGGCAAA+GGG | 0.570042 | 6_4:-84935870 | Msa1001210:CDS |
| CAATAATTGATAAAGATGGT+TGG | 0.571321 | 6_4:-84934314 | Msa1001210:CDS |
| GAGGAAATTTGACATTGATG+AGG | 0.576756 | 6_4:-84935955 | Msa1001210:CDS |
| AACAGCTAGAAACACACACT+TGG | 0.579086 | 6_4:+84936055 | None:intergenic |
| ATTGTCAATGCCGACAACAT+CGG | 0.579863 | 6_4:+84935882 | None:intergenic |
| CTAATAACTCCTATGCTCAA+AGG | 0.581487 | 6_4:+84935795 | None:intergenic |
| AGTTTGAGACAGGTCTCTTG+CGG | 0.592614 | 6_4:-84935825 | Msa1001210:CDS |
| GATGAATACCAATGAGGGTG+AGG | 0.592922 | 6_4:+84936742 | None:intergenic |
| GTTGTCGGCATTGACAATGA+AGG | 0.595731 | 6_4:-84935877 | Msa1001210:CDS |
| AGGGCTAAAACCCCATCATG+AGG | 0.601023 | 6_4:+84936631 | None:intergenic |
| AGCTCACCGCAGCTGCCTGG+GGG | 0.606825 | 6_4:+84934994 | None:intergenic |
| CGTAAACAGGTTCAAGAGTG+TGG | 0.611754 | 6_4:-84936391 | Msa1001210:CDS |
| AGGGTTGTTGGCTCCAAACA+CGG | 0.614077 | 6_4:-84935055 | Msa1001210:CDS |
| GGGACTACAGGTGTGAGCAA+AGG | 0.615067 | 6_4:-84936161 | Msa1001210:intron |
| AAAGACATTATCAAATACAA+GGG | 0.615550 | 6_4:-84934228 | Msa1001210:CDS |
| GTCAATGCCGACAACATCGG+TGG | 0.615987 | 6_4:+84935885 | None:intergenic |
| AGAGGGCCTTCTATTATGAG+AGG | 0.618979 | 6_4:-84934964 | Msa1001210:intron |
| TCGACTGCAGTGGGAACACG+TGG | 0.624008 | 6_4:-84935114 | Msa1001210:CDS |
| GCTCTACAGTCATTGTAATG+AGG | 0.624765 | 6_4:-84935974 | Msa1001210:CDS |
| ATGACTGAGTCGACTGCAGT+GGG | 0.649133 | 6_4:-84935123 | Msa1001210:CDS |
| GGGCTAAAACCCCATCATGA+GGG | 0.653343 | 6_4:+84936632 | None:intergenic |
| TGCTGTGCCAGAAAATGAGA+AGG | 0.670004 | 6_4:-84936296 | Msa1001210:CDS |
| AAAGATGGTTGGCTACACAC+AGG | 0.679404 | 6_4:-84934303 | Msa1001210:CDS |
| AAGAAACTAGAGCTATTAGG+TGG | 0.680245 | 6_4:-84936334 | Msa1001210:CDS |
| ATGAATACCAATGAGGGTGA+GGG | 0.691317 | 6_4:+84936743 | None:intergenic |
| AATGACTGAGTCGACTGCAG+TGG | 0.712703 | 6_4:-84935124 | Msa1001210:CDS |
| GAACAGCCAATAGTATAACA+GGG | 0.716419 | 6_4:+84936470 | None:intergenic |
| GTTGTTGGCTCCAAACACGG+AGG | 0.795141 | 6_4:-84935052 | Msa1001210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTCTTTGTTATTGT+TGG | - | chr6_4:84935213-84935232 | Msa1001210:intron | 15.0% |
| !! | AGATATTAAAAAGTAAAACA+CGG | - | chr6_4:84935944-84935963 | Msa1001210:CDS | 15.0% |
| !!! | TCATTAACATTTTAATGATA+AGG | + | chr6_4:84936273-84936292 | None:intergenic | 15.0% |
| !! | ATATCAATAATTGATAAAGA+TGG | - | chr6_4:84936543-84936562 | Msa1001210:CDS | 15.0% |
| !!! | AGTTTTTTTAACCTTCTTTA+TGG | - | chr6_4:84934610-84934629 | Msa1001210:intron | 20.0% |
| !! | AATCAAATTTACCATAAAGA+AGG | + | chr6_4:84934624-84934643 | None:intergenic | 20.0% |
| !!! | TCATAGAAATCTTATTTCTA+TGG | - | chr6_4:84934735-84934754 | Msa1001210:intron | 20.0% |
| !! | ATTAAGACTATTCTATTCAA+AGG | + | chr6_4:84935140-84935159 | None:intergenic | 20.0% |
| !! | TTTAATAGCAACTGTTATAT+AGG | - | chr6_4:84935294-84935313 | Msa1001210:intron | 20.0% |
| !! | TTAATAGCAACTGTTATATA+GGG | - | chr6_4:84935295-84935314 | Msa1001210:intron | 20.0% |
| !! | AAATTGAAGTAAATTTCTCT+TGG | - | chr6_4:84936360-84936379 | Msa1001210:CDS | 20.0% |
| !! | GTTTGATTAACAACTTTAAT+TGG | + | chr6_4:84936478-84936497 | None:intergenic | 20.0% |
| !!! | AGATATTGTTTATTTTGATC+AGG | - | chr6_4:84936581-84936600 | Msa1001210:CDS | 20.0% |
| !! | AAAGACATTATCAAATACAA+GGG | - | chr6_4:84936633-84936652 | Msa1001210:CDS | 20.0% |
| !! | TTTTTGATGAATACCAATGA+GGG | + | chr6_4:84934127-84934146 | None:intergenic | 25.0% |
| !! | TAACAACTTTGAGAAAGAAA+TGG | + | chr6_4:84934279-84934298 | None:intergenic | 25.0% |
| ! | ACAGGGTAATAAATTGAATT+TGG | + | chr6_4:84934377-84934396 | None:intergenic | 25.0% |
| ! | TTATTACCCTGTTATACTAT+TGG | - | chr6_4:84934385-84934404 | Msa1001210:intron | 25.0% |
| !!! | TAAATTTGATTTGCCTCAAA+GGG | - | chr6_4:84934633-84934652 | Msa1001210:intron | 25.0% |
| !!! | TTATGATCTAGAATTTGTTG+TGG | + | chr6_4:84935632-84935651 | None:intergenic | 25.0% |
| ! | CTTACAGCTATTAATAATCT+AGG | + | chr6_4:84935694-84935713 | None:intergenic | 25.0% |
| !!! | TGTAAGATTGTTTCTTTTCA+GGG | - | chr6_4:84935708-84935727 | Msa1001210:intron | 25.0% |
| !! | TTTTTACCTCTCATAATAGA+AGG | + | chr6_4:84935906-84935925 | None:intergenic | 25.0% |
| ! | AAAACACGGTAGTAATATAA+AGG | - | chr6_4:84935958-84935977 | Msa1001210:CDS | 25.0% |
| ! | TATAGAGCAAATATCGTAAA+GGG | + | chr6_4:84936100-84936119 | None:intergenic | 25.0% |
| ! | ATATAGAGCAAATATCGTAA+AGG | + | chr6_4:84936101-84936120 | None:intergenic | 25.0% |
| !!! | ATTTGTTATCGCTTAACTAA+AGG | - | chr6_4:84936119-84936138 | Msa1001210:CDS | 25.0% |
| ! | CAATAATTGATAAAGATGGT+TGG | - | chr6_4:84936547-84936566 | Msa1001210:CDS | 25.0% |
| !!! | ATTGTTTATTTTGATCAGGA+TGG | - | chr6_4:84936585-84936604 | Msa1001210:CDS | 25.0% |
| ! | GAAAGACATTATCAAATACA+AGG | - | chr6_4:84936632-84936651 | Msa1001210:CDS | 25.0% |
| !!! | TTGAGTGATCATGTTGTTTT+GGG | + | chr6_4:84934096-84934115 | None:intergenic | 30.0% |
| ! | GTTTTTGATGAATACCAATG+AGG | + | chr6_4:84934128-84934147 | None:intergenic | 30.0% |
| CATTGGTATTCATCAAAAAC+TGG | - | chr6_4:84934128-84934147 | Msa1001210:intron | 30.0% | |
| AGGAAACAATGTCAAGAAAA+GGG | + | chr6_4:84934196-84934215 | None:intergenic | 30.0% | |
| AAGGAAACAATGTCAAGAAA+AGG | + | chr6_4:84934197-84934216 | None:intergenic | 30.0% | |
| !! | TCTAGTTTCTTGACATTTTC+AGG | + | chr6_4:84934518-84934537 | None:intergenic | 30.0% |
| !! | GTAAATTTGATTTGCCTCAA+AGG | - | chr6_4:84934632-84934651 | Msa1001210:intron | 30.0% |
| TGTTTAATAACTACCCTTTG+AGG | + | chr6_4:84934649-84934668 | None:intergenic | 30.0% | |
| TCAAAGGGTAGTTATTAAAC+AGG | - | chr6_4:84934648-84934667 | Msa1001210:intron | 30.0% | |
| CTGGTATATTGTATTCATCT+GGG | - | chr6_4:84934680-84934699 | Msa1001210:intron | 30.0% | |
| AAACCATACACATGAAACAT+TGG | + | chr6_4:84934835-84934854 | None:intergenic | 30.0% | |
| TTGACATTGATGAGGTTATT+AGG | - | chr6_4:84934914-84934933 | Msa1001210:intron | 30.0% | |
| TGACATTGATGAGGTTATTA+GGG | - | chr6_4:84934915-84934934 | Msa1001210:intron | 30.0% | |
| CCTGTATAAAATCAACGTTA+GGG | + | chr6_4:84935110-84935129 | None:intergenic | 30.0% | |
| ACCTGTATAAAATCAACGTT+AGG | + | chr6_4:84935111-84935130 | None:intergenic | 30.0% | |
| TCAAGCAATCATATAAACGA+TGG | + | chr6_4:84935183-84935202 | None:intergenic | 30.0% | |
| AATAAGTTGTTTAGCCAAAC+AGG | + | chr6_4:84935321-84935340 | None:intergenic | 30.0% | |
| GTTTGGCTAAACAACTTATT+TGG | - | chr6_4:84935321-84935340 | Msa1001210:intron | 30.0% | |
| AAATAAGCTGAACAGAACTA+AGG | - | chr6_4:84935488-84935507 | Msa1001210:intron | 30.0% | |
| !! | CTGTAAGATTGTTTCTTTTC+AGG | - | chr6_4:84935707-84935726 | Msa1001210:intron | 30.0% |
| ATTCACAACTATTCGTCAAT+AGG | - | chr6_4:84935786-84935805 | Msa1001210:CDS | 30.0% | |
| TTCACAACTATTCGTCAATA+GGG | - | chr6_4:84935787-84935806 | Msa1001210:CDS | 30.0% | |
| ATAGAGCAAATATCGTAAAG+GGG | + | chr6_4:84936099-84936118 | None:intergenic | 30.0% | |
| AACCAACATGATATTTCTCA+AGG | + | chr6_4:84936152-84936171 | None:intergenic | 30.0% | |
| !!! | AATCAAGACCTTTTTTCACT+AGG | - | chr6_4:84936332-84936351 | Msa1001210:CDS | 30.0% |
| AACTCTTTCCTTTAATTCTC+AGG | - | chr6_4:84936495-84936514 | Msa1001210:CDS | 30.0% | |
| TCAAGTATCCTGAGAATTAA+AGG | + | chr6_4:84936506-84936525 | None:intergenic | 30.0% | |
| TCAGGATGGATATTTACATT+TGG | - | chr6_4:84936599-84936618 | Msa1001210:CDS | 30.0% | |
| TATCAAATACAAGGGATTTC+AGG | - | chr6_4:84936641-84936660 | Msa1001210:CDS | 30.0% | |
| !! | GATTTCAGGTATCTACTTTT+AGG | - | chr6_4:84936655-84936674 | Msa1001210:CDS | 30.0% |
| !! | GTTGAGTGATCATGTTGTTT+TGG | + | chr6_4:84934097-84934116 | None:intergenic | 35.0% |
| ! | ATGAGGGTGTGAAAAAATGA+AGG | + | chr6_4:84934216-84934235 | None:intergenic | 35.0% |
| !!! | ATTTTTTCACACCCTCATGA+TGG | - | chr6_4:84934218-84934237 | Msa1001210:intron | 35.0% |
| !!! | TTTTTTCACACCCTCATGAT+GGG | - | chr6_4:84934219-84934238 | Msa1001210:intron | 35.0% |
| CCCAGATGAAGAATCAATAA+GGG | + | chr6_4:84934252-84934271 | None:intergenic | 35.0% | |
| !! | CCCTTATTGATTCTTCATCT+GGG | - | chr6_4:84934249-84934268 | Msa1001210:CDS | 35.0% |
| ACCCAGATGAAGAATCAATA+AGG | + | chr6_4:84934253-84934272 | None:intergenic | 35.0% | |
| GTTACCTTTAGTCAAATCCA+TGG | - | chr6_4:84934295-84934314 | Msa1001210:CDS | 35.0% | |
| GCTTCTGCTTTACACAAAAT+GGG | - | chr6_4:84934317-84934336 | Msa1001210:CDS | 35.0% | |
| GAACAGCCAATAGTATAACA+GGG | + | chr6_4:84934394-84934413 | None:intergenic | 35.0% | |
| AGAACAGCCAATAGTATAAC+AGG | + | chr6_4:84934395-84934414 | None:intergenic | 35.0% | |
| ! | CTATTGGCTGTTCTGTATTT+AGG | - | chr6_4:84934401-84934420 | Msa1001210:intron | 35.0% |
| ACACTACTAAGAGGATTCAA+TGG | + | chr6_4:84934440-84934459 | None:intergenic | 35.0% | |
| TTGAATCCTCTTAGTAGTGT+TGG | - | chr6_4:84934440-84934459 | Msa1001210:intron | 35.0% | |
| GTCAAGAAACTAGAGCTATT+AGG | - | chr6_4:84934524-84934543 | Msa1001210:intron | 35.0% | |
| AAGAAACTAGAGCTATTAGG+TGG | - | chr6_4:84934527-84934546 | Msa1001210:intron | 35.0% | |
| ! | CTCAAATCCTTCTCATTTTC+TGG | + | chr6_4:84934575-84934594 | None:intergenic | 35.0% |
| CAGAAAATGAGAAGGATTTG+AGG | - | chr6_4:84934573-84934592 | Msa1001210:intron | 35.0% | |
| ATTAAACAGGAAGATACTGC+TGG | - | chr6_4:84934661-84934680 | Msa1001210:intron | 35.0% | |
| GCTGGTATATTGTATTCATC+TGG | - | chr6_4:84934679-84934698 | Msa1001210:intron | 35.0% | |
| TTGCCAATGTTTCATGTGTA+TGG | - | chr6_4:84934829-84934848 | Msa1001210:intron | 35.0% | |
| GAGGAAATTTGACATTGATG+AGG | - | chr6_4:84934906-84934925 | Msa1001210:intron | 35.0% | |
| CTAATAACTCCTATGCTCAA+AGG | + | chr6_4:84935069-84935088 | None:intergenic | 35.0% | |
| !!! | CCCTAACGTTGATTTTATAC+AGG | - | chr6_4:84935107-84935126 | Msa1001210:CDS | 35.0% |
| !! | GTCGTTTTCATAAGCTATCT+TGG | - | chr6_4:84935454-84935473 | Msa1001210:intron | 35.0% |
| ! | TAAGTTTTGCGAGACTGTTT+GGG | + | chr6_4:84935544-84935563 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTGTT+TGG | + | chr6_4:84935545-84935564 | None:intergenic | 35.0% |
| AATTGTTTGAGCTTGTCTAC+TGG | + | chr6_4:84935569-84935588 | None:intergenic | 35.0% | |
| !! | ATTGTTTCTTTTCAGGGTTG+TGG | - | chr6_4:84935714-84935733 | Msa1001210:intron | 35.0% |
| ATGCAAATGTAGGGTAAGAT+TGG | + | chr6_4:84935999-84936018 | None:intergenic | 35.0% | |
| ATCAAGCTCATGCAAATGTA+GGG | + | chr6_4:84936008-84936027 | None:intergenic | 35.0% | |
| AATCAAGCTCATGCAAATGT+AGG | + | chr6_4:84936009-84936028 | None:intergenic | 35.0% | |
| TTTGCATGAGCTTGATTCAA+TGG | - | chr6_4:84936012-84936031 | Msa1001210:CDS | 35.0% | |
| ATGATATTTCTCAAGGACAC+AGG | + | chr6_4:84936145-84936164 | None:intergenic | 35.0% | |
| GTCCTTGAGAAATATCATGT+TGG | - | chr6_4:84936147-84936166 | Msa1001210:CDS | 35.0% | |
| TATACACTCATCTGTTGTTG+TGG | - | chr6_4:84936203-84936222 | Msa1001210:intron | 35.0% | |
| !!! | AAGACCTTTTTTCACTAGGT+GGG | - | chr6_4:84936336-84936355 | Msa1001210:CDS | 35.0% |
| ! | TTTTCCCACCTAGTGAAAAA+AGG | + | chr6_4:84936343-84936362 | None:intergenic | 35.0% |
| ! | AGAAAAAAGAAGGTACAGGT+AGG | + | chr6_4:84936437-84936456 | None:intergenic | 35.0% |
| ! | GACAAGAAAAAAGAAGGTAC+AGG | + | chr6_4:84936441-84936460 | None:intergenic | 35.0% |
| CAGCAAGACAAGAAAAAAGA+AGG | + | chr6_4:84936447-84936466 | None:intergenic | 35.0% | |
| CTCAGGATACTTGAATAATG+AGG | - | chr6_4:84936512-84936531 | Msa1001210:CDS | 35.0% | |
| ATGAATACCAATGAGGGTGA+GGG | + | chr6_4:84934121-84934140 | None:intergenic | 40.0% | |
| ATGTCAAGAAAAGGGTCAGT+TGG | + | chr6_4:84934188-84934207 | None:intergenic | 40.0% | |
| ! | TTTTTCACACCCTCATGATG+GGG | - | chr6_4:84934220-84934239 | Msa1001210:intron | 40.0% |
| !! | GCCCTTATTGATTCTTCATC+TGG | - | chr6_4:84934248-84934267 | Msa1001210:CDS | 40.0% |
| GAAGCCATGGATTTGACTAA+AGG | + | chr6_4:84934302-84934321 | None:intergenic | 40.0% | |
| TTTGTGTAAAGCAGAAGCCA+TGG | + | chr6_4:84934315-84934334 | None:intergenic | 40.0% | |
| GGCTTCTGCTTTACACAAAA+TGG | - | chr6_4:84934316-84934335 | Msa1001210:CDS | 40.0% | |
| CACAAAATGGGTGTTTCACA+AGG | - | chr6_4:84934329-84934348 | Msa1001210:CDS | 40.0% | |
| ATTTCGCCAACACTACTAAG+AGG | + | chr6_4:84934449-84934468 | None:intergenic | 40.0% | |
| TGTTGGCGAAATTCGTAAAC+AGG | - | chr6_4:84934457-84934476 | Msa1001210:intron | 40.0% | |
| !! | TTTTCTGGCACAGCAACAAT+GGG | + | chr6_4:84934560-84934579 | None:intergenic | 40.0% |
| !! | ATTTTCTGGCACAGCAACAA+TGG | + | chr6_4:84934561-84934580 | None:intergenic | 40.0% |
| ! | TTGTATTCATCTGGGACTAC+AGG | - | chr6_4:84934688-84934707 | Msa1001210:intron | 40.0% |
| AACAGCTAGAAACACACACT+TGG | + | chr6_4:84934809-84934828 | None:intergenic | 40.0% | |
| GCTCTACAGTCATTGTAATG+AGG | - | chr6_4:84934887-84934906 | Msa1001210:intron | 40.0% | |
| ATTGTCAATGCCGACAACAT+CGG | + | chr6_4:84934982-84935001 | None:intergenic | 40.0% | |
| ! | GCATTGACAATGAAGGCAAA+GGG | - | chr6_4:84934991-84935010 | Msa1001210:CDS | 40.0% |
| ! | TAAGTTGCAGAGTTTGAGAC+AGG | - | chr6_4:84935026-84935045 | Msa1001210:CDS | 40.0% |
| AATCAACGTTAGGGAAAGCA+TGG | + | chr6_4:84935101-84935120 | None:intergenic | 40.0% | |
| ACTGTTATATAGGGCCTGTT+TGG | - | chr6_4:84935304-84935323 | Msa1001210:intron | 40.0% | |
| CTATTCGTCAATAGGGTTGT+TGG | - | chr6_4:84935794-84935813 | Msa1001210:CDS | 40.0% | |
| AAAGTGGTAGACTGGAACAA+TGG | - | chr6_4:84935834-84935853 | Msa1001210:CDS | 40.0% | |
| AGCAAATATCGTAAAGGGGA+GGG | + | chr6_4:84936095-84936114 | None:intergenic | 40.0% | |
| !!! | CAAGACCTTTTTTCACTAGG+TGG | - | chr6_4:84936335-84936354 | Msa1001210:CDS | 40.0% |
| TACAGGTAGGCTAAGGAATA+AGG | + | chr6_4:84936424-84936443 | None:intergenic | 40.0% | |
| TAAAAGCTGTCTGTAACAGC+AGG | - | chr6_4:84936790-84936809 | Msa1001210:CDS | 40.0% | |
| GATGAATACCAATGAGGGTG+AGG | + | chr6_4:84934122-84934141 | None:intergenic | 45.0% | |
| GGGTCAGTTGGAAGATTTCT+AGG | + | chr6_4:84934176-84934195 | None:intergenic | 45.0% | |
| CGTAAACAGGTTCAAGAGTG+TGG | - | chr6_4:84934470-84934489 | Msa1001210:intron | 45.0% | |
| TGCTGTGCCAGAAAATGAGA+AGG | - | chr6_4:84934565-84934584 | Msa1001210:intron | 45.0% | |
| TGGTTTATCGCTCTTTGCTG+CGG | - | chr6_4:84934849-84934868 | Msa1001210:intron | 45.0% | |
| TGTTGTTCCACCGATGTTGT+CGG | - | chr6_4:84934969-84934988 | Msa1001210:CDS | 45.0% | |
| !! | GTTGTCGGCATTGACAATGA+AGG | - | chr6_4:84934984-84935003 | Msa1001210:CDS | 45.0% |
| !! | GGCATTGACAATGAAGGCAA+AGG | - | chr6_4:84934990-84935009 | Msa1001210:CDS | 45.0% |
| !! | ATGAAGGCAAAGGGTGTTAC+TGG | - | chr6_4:84935000-84935019 | Msa1001210:CDS | 45.0% |
| ! | AGTTTGAGACAGGTCTCTTG+CGG | - | chr6_4:84935036-84935055 | Msa1001210:CDS | 45.0% |
| !!! | AATGGTACTTTTTTGCCCCC+AGG | - | chr6_4:84935852-84935871 | Msa1001210:CDS | 45.0% |
| AGAGGGCCTTCTATTATGAG+AGG | - | chr6_4:84935897-84935916 | Msa1001210:CDS | 45.0% | |
| CATGAGCTTGATTCAATGGC+TGG | - | chr6_4:84936016-84936035 | Msa1001210:CDS | 45.0% | |
| !! | AAAGGTTTGAGTTGCTGCAG+TGG | + | chr6_4:84936061-84936080 | None:intergenic | 45.0% |
| !! | GGGAGGGAGTTTTGACATAA+AGG | + | chr6_4:84936079-84936098 | None:intergenic | 45.0% |
| GAGCAAATATCGTAAAGGGG+AGG | + | chr6_4:84936096-84936115 | None:intergenic | 45.0% | |
| ! | AAGAAGGTACAGGTAGGCTA+AGG | + | chr6_4:84936431-84936450 | None:intergenic | 45.0% |
| ! | AAAGATGGTTGGCTACACAC+AGG | - | chr6_4:84936558-84936577 | Msa1001210:CDS | 45.0% |
| ! | CAGACAGCTTTTAGATCAGC+AGG | + | chr6_4:84936783-84936802 | None:intergenic | 45.0% |
| GGGCTAAAACCCCATCATGA+GGG | + | chr6_4:84934232-84934251 | None:intergenic | 50.0% | |
| AGGGCTAAAACCCCATCATG+AGG | + | chr6_4:84934233-84934252 | None:intergenic | 50.0% | |
| GGTTTATCGCTCTTTGCTGC+GGG | - | chr6_4:84934850-84934869 | Msa1001210:intron | 50.0% | |
| TGCTGCGGGATTATTGTCGT+TGG | - | chr6_4:84934864-84934883 | Msa1001210:intron | 50.0% | |
| GCTGCGGGATTATTGTCGTT+GGG | - | chr6_4:84934865-84934884 | Msa1001210:intron | 50.0% | |
| AATGACTGAGTCGACTGCAG+TGG | - | chr6_4:84935737-84935756 | Msa1001210:intron | 50.0% | |
| ATGACTGAGTCGACTGCAGT+GGG | - | chr6_4:84935738-84935757 | Msa1001210:intron | 50.0% | |
| !! | AGGGTTGTTGGCTCCAAACA+CGG | - | chr6_4:84935806-84935825 | Msa1001210:CDS | 50.0% |
| TCCAAACACGGAGGCAAAAG+TGG | - | chr6_4:84935818-84935837 | Msa1001210:CDS | 50.0% | |
| !! | ACCACTTTTGCCTCCGTGTT+TGG | + | chr6_4:84935822-84935841 | None:intergenic | 50.0% |
| CAGTGGTGTGACTAACGTTC+AGG | + | chr6_4:84936044-84936063 | None:intergenic | 50.0% | |
| CTCAACACCCTCACCCTCAT+TGG | - | chr6_4:84934111-84934130 | Msa1001210:intron | 55.0% | |
| GGGACTACAGGTGTGAGCAA+AGG | - | chr6_4:84934700-84934719 | Msa1001210:intron | 55.0% | |
| GTCAATGCCGACAACATCGG+TGG | + | chr6_4:84934979-84934998 | None:intergenic | 55.0% | |
| !! | GTTGTTGGCTCCAAACACGG+AGG | - | chr6_4:84935809-84935828 | Msa1001210:CDS | 55.0% |
| CGGAGGCAAAAGTGGTAGAC+TGG | - | chr6_4:84935826-84935845 | Msa1001210:CDS | 55.0% | |
| ! | TGCGGTGAGCTTTGGTTGAG+AGG | - | chr6_4:84935879-84935898 | Msa1001210:CDS | 55.0% |
| ! | GCGGTGAGCTTTGGTTGAGA+GGG | - | chr6_4:84935880-84935899 | Msa1001210:CDS | 55.0% |
| GGTGCAGCGCCTTTGAGCAT+AGG | - | chr6_4:84935057-84935076 | Msa1001210:CDS | 60.0% | |
| TCGACTGCAGTGGGAACACG+TGG | - | chr6_4:84935747-84935766 | Msa1001210:intron | 60.0% | |
| ! | TTTTTGCCCCCAGGCAGCTG+CGG | - | chr6_4:84935861-84935880 | Msa1001210:CDS | 60.0% |
| AAAGCTCACCGCAGCTGCCT+GGG | + | chr6_4:84935872-84935891 | None:intergenic | 60.0% | |
| AAGCTCACCGCAGCTGCCTG+GGG | + | chr6_4:84935871-84935890 | None:intergenic | 65.0% | |
| CAAAGCTCACCGCAGCTGCC+TGG | + | chr6_4:84935873-84935892 | None:intergenic | 65.0% | |
| CAGGCAGCTGCGGTGAGCTT+TGG | - | chr6_4:84935871-84935890 | Msa1001210:CDS | 65.0% | |
| AGCTCACCGCAGCTGCCTGG+GGG | + | chr6_4:84935870-84935889 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 84934059 | 84936824 | 84934059 | ID=Msa1001210;Name=Msa1001210 |
| chr6_4 | mRNA | 84934059 | 84936824 | 84934059 | ID=Msa1001210-mRNA-1;Parent=Msa1001210;Name=Msa1001210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.2|1|1|1|5|0|449 |
| chr6_4 | exon | 84936281 | 84936824 | 84936281 | ID=Msa1001210-mRNA-1:exon:16612;Parent=Msa1001210-mRNA-1 |
| chr6_4 | exon | 84935755 | 84936173 | 84935755 | ID=Msa1001210-mRNA-1:exon:16611;Parent=Msa1001210-mRNA-1 |
| chr6_4 | exon | 84934965 | 84935154 | 84934965 | ID=Msa1001210-mRNA-1:exon:16610;Parent=Msa1001210-mRNA-1 |
| chr6_4 | exon | 84934221 | 84934366 | 84934221 | ID=Msa1001210-mRNA-1:exon:16609;Parent=Msa1001210-mRNA-1 |
| chr6_4 | exon | 84934059 | 84934109 | 84934059 | ID=Msa1001210-mRNA-1:exon:16608;Parent=Msa1001210-mRNA-1 |
| chr6_4 | CDS | 84936281 | 84936824 | 84936281 | ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1 |
| chr6_4 | CDS | 84935755 | 84936173 | 84935755 | ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1 |
| chr6_4 | CDS | 84934965 | 84935154 | 84934965 | ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1 |
| chr6_4 | CDS | 84934221 | 84934366 | 84934221 | ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1 |
| chr6_4 | CDS | 84934059 | 84934109 | 84934059 | ID=Msa1001210-mRNA-1:cds;Parent=Msa1001210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
