Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0980340 | XP_004497659.1 | 97.748 | 222 | 5 | 0 | 1 | 222 | 117 | 338 | 2.21e-158 | 452 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0980340 | sp|Q8VXX4|RFC3_ARATH | 83.784 | 222 | 36 | 0 | 1 | 222 | 117 | 338 | 1.19e-141 | 402 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0980340 | A0A1S3E4R2 | 97.748 | 222 | 5 | 0 | 1 | 222 | 117 | 338 | 1.05e-158 | 452 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0018000 | Msa0980340 | 0.802266 | 6.088095e-49 | -8.615850e-47 |
Msa0110970 | Msa0980340 | 0.813863 | 2.063882e-51 | -8.615850e-47 |
Msa0702590 | Msa0980340 | 0.800458 | 1.427474e-48 | -8.615850e-47 |
Msa0134610 | Msa0980340 | 0.817317 | 3.511082e-52 | -8.615850e-47 |
Msa0422930 | Msa0980340 | 0.801048 | 1.081973e-48 | -8.615850e-47 |
Msa0475790 | Msa0980340 | 0.817210 | 3.710288e-52 | -8.615850e-47 |
Msa0980340 | Msa1066490 | 0.801016 | 1.098528e-48 | -8.615850e-47 |
Msa0980340 | Msa1093840 | 0.804610 | 1.989040e-49 | -8.615850e-47 |
Msa0980340 | Msa1157870 | 0.800748 | 1.245847e-48 | -8.615850e-47 |
Msa0980340 | Msa1221060 | 0.803089 | 4.117125e-49 | -8.615850e-47 |
Msa0980340 | Msa1276660 | 0.808023 | 3.797383e-50 | -8.615850e-47 |
Msa0980340 | Msa1303250 | 0.802748 | 4.841835e-49 | -8.615850e-47 |
Msa0980340 | Msa1361400 | 0.806595 | 7.621654e-50 | -8.615850e-47 |
Msa0980340 | Msa1361410 | 0.800878 | 1.172173e-48 | -8.615850e-47 |
Msa0980340 | Msa1446810 | 0.819523 | 1.110706e-52 | -8.615850e-47 |
Msa0292400 | Msa0980340 | 0.808198 | 3.484734e-50 | -8.615850e-47 |
Msa0300690 | Msa0980340 | 0.807257 | 5.521856e-50 | -8.615850e-47 |
Msa0316810 | Msa0980340 | 0.800748 | 1.245966e-48 | -8.615850e-47 |
Msa0339500 | Msa0980340 | 0.806173 | 9.354995e-50 | -8.615850e-47 |
Msa0345330 | Msa0980340 | 0.808159 | 3.552447e-50 | -8.615850e-47 |
Msa0345410 | Msa0980340 | 0.801334 | 9.455185e-49 | -8.615850e-47 |
Msa0861510 | Msa0980340 | 0.815362 | 9.609234e-52 | -8.615850e-47 |
Msa0861530 | Msa0980340 | 0.811228 | 7.775249e-51 | -8.615850e-47 |
Msa0861600 | Msa0980340 | 0.802330 | 5.904947e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0980340 | MtrunA17_Chr6g0460841 | 97.748 | 222 | 5 | 0 | 1 | 222 | 117 | 338 | 4.93e-162 | 451 |
Msa0980340 | MtrunA17_Chr6g0478631 | 96.847 | 222 | 7 | 0 | 1 | 222 | 117 | 338 | 2.63e-161 | 449 |
Msa0980340 | MtrunA17_Chr5g0404521 | 37.324 | 142 | 88 | 1 | 12 | 153 | 531 | 671 | 7.15e-30 | 116 |
Msa0980340 | MtrunA17_Chr3g0145801 | 34.831 | 178 | 114 | 2 | 16 | 193 | 553 | 728 | 8.57e-28 | 110 |
Msa0980340 | MtrunA17_Chr3g0125031 | 33.051 | 118 | 79 | 0 | 1 | 118 | 102 | 219 | 2.17e-16 | 76.6 |
Msa0980340 | MtrunA17_Chr4g0057341 | 40.230 | 87 | 51 | 1 | 16 | 101 | 115 | 201 | 8.00e-13 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0980340 | AT5G27740.1 | 83.784 | 222 | 36 | 0 | 1 | 222 | 117 | 338 | 1.21e-142 | 402 |
Msa0980340 | AT1G21690.2 | 36.538 | 104 | 66 | 0 | 15 | 118 | 104 | 207 | 1.99e-15 | 74.3 |
Msa0980340 | AT1G21690.1 | 38.384 | 99 | 61 | 0 | 15 | 113 | 116 | 214 | 2.27e-15 | 74.3 |
Msa0980340 | AT1G21690.4 | 38.384 | 99 | 61 | 0 | 15 | 113 | 109 | 207 | 2.37e-15 | 73.9 |
Msa0980340 | AT1G21690.3 | 36.538 | 104 | 66 | 0 | 15 | 118 | 116 | 219 | 2.49e-15 | 73.9 |
Msa0980340 | AT1G63160.1 | 31.356 | 118 | 78 | 3 | 16 | 132 | 115 | 230 | 2.14e-12 | 65.5 |
Find 43 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTTGATTAAAGCATTAA+TGG | 0.171852 | 6_4:+18374162 | Msa0980340:intron |
GCAAGTCTCAAATGATAATA+TGG | 0.323719 | 6_4:-18372080 | None:intergenic |
AAAGGGAAGAAAGGATTTAA+AGG | 0.340018 | 6_4:+18370672 | Msa0980340:CDS |
TTTCTTCCCTTTAGCATCAA+TGG | 0.349194 | 6_4:-18370661 | None:intergenic |
TTCTTCCCTTTAGCATCAAT+GGG | 0.356459 | 6_4:-18370660 | None:intergenic |
GAAGGGCTACAACTTCCTTC+TGG | 0.367171 | 6_4:+18372010 | Msa0980340:CDS |
TGAAAGAACAAAGCCCAAAA+AGG | 0.384186 | 6_4:+18372316 | Msa0980340:CDS |
TTATGAGCTACTGAGGAAAC+TGG | 0.397333 | 6_4:+18372617 | Msa0980340:CDS |
TTTACCTTCAAAATGATCTC+TGG | 0.416432 | 6_4:-18372509 | None:intergenic |
AAATGCACCAAGTGAAGAAC+AGG | 0.440498 | 6_4:+18371023 | Msa0980340:CDS |
CAGTTCATTGGTAAGAAAGA+AGG | 0.440654 | 6_4:+18371992 | Msa0980340:CDS |
AATAGACCCATTGATGCTAA+AGG | 0.464660 | 6_4:+18370654 | Msa0980340:CDS |
AGAAATCAAATCGGAATTTG+AGG | 0.467465 | 6_4:+18372053 | Msa0980340:CDS |
TATTCGTACATTAAGACAAC+GGG | 0.467729 | 6_4:-18371001 | None:intergenic |
ATTGTTTGTTTGTCAGTGAA+AGG | 0.479733 | 6_4:-18372243 | None:intergenic |
ATAGACCCATTGATGCTAAA+GGG | 0.483185 | 6_4:+18370655 | Msa0980340:CDS |
TTTAGGTTGTTTCAAGTTCG+TGG | 0.487361 | 6_4:+18372452 | Msa0980340:intron |
ATATATTCTTCCCAGTCCAT+TGG | 0.489328 | 6_4:-18372270 | None:intergenic |
TTACTAACCTGTTCTTCACT+TGG | 0.496208 | 6_4:-18371030 | None:intergenic |
AGTTCTAGTGCTTAATGATG+TGG | 0.505558 | 6_4:+18370861 | Msa0980340:intron |
AAACAATTCCTCCAATGGAC+TGG | 0.507805 | 6_4:+18372259 | Msa0980340:CDS |
ATTGATGCTAAAGGGAAGAA+AGG | 0.517548 | 6_4:+18370663 | Msa0980340:CDS |
TCGGATGCGCCTTGGACAGA+AGG | 0.522214 | 6_4:+18372958 | Msa0980340:CDS |
AAAGCATGAAGTCTGCCATT+GGG | 0.522773 | 6_4:+18372650 | Msa0980340:CDS |
TAAAGCATGAAGTCTGCCAT+TGG | 0.529099 | 6_4:+18372649 | Msa0980340:CDS |
TATTCTTCCCAGTCCATTGG+AGG | 0.537168 | 6_4:-18372267 | None:intergenic |
CAAACAAACAATTCCTCCAA+TGG | 0.546977 | 6_4:+18372254 | Msa0980340:CDS |
AGTTCATTGGTAAGAAAGAA+GGG | 0.571624 | 6_4:+18371993 | Msa0980340:CDS |
GTACATTAAGACAACGGGAG+CGG | 0.575694 | 6_4:-18370996 | None:intergenic |
ATTAAGACAACGGGAGCGGA+TGG | 0.578928 | 6_4:-18370992 | None:intergenic |
ACATTCTCTCCGCAGAACGA+TGG | 0.581717 | 6_4:+18370906 | Msa0980340:CDS |
AACAATTCCTCCAATGGACT+GGG | 0.583344 | 6_4:+18372260 | Msa0980340:CDS |
GTATAGCAGAGAAATCAAAT+CGG | 0.601405 | 6_4:+18372044 | Msa0980340:CDS |
ACCTTCAAAATGATCTCTGG+AGG | 0.601868 | 6_4:-18372506 | None:intergenic |
TGTATTTCTCCATCGTTCTG+CGG | 0.603903 | 6_4:-18370915 | None:intergenic |
CCTCATTGAACCAGGAACAT+CGG | 0.605635 | 6_4:+18372939 | Msa0980340:intron |
GGCTACTTTATGAGCTACTG+AGG | 0.611900 | 6_4:+18372610 | Msa0980340:CDS |
TTACATAGTATGCTGCCCAA+TGG | 0.622267 | 6_4:-18372665 | None:intergenic |
ATCAAATCGGAATTTGAGGA+GGG | 0.625589 | 6_4:+18372057 | Msa0980340:CDS |
AATCAAATCGGAATTTGAGG+AGG | 0.632114 | 6_4:+18372056 | Msa0980340:CDS |
ATACGAGCAGCGAAACCAGA+AGG | 0.638037 | 6_4:-18372025 | None:intergenic |
TTATTCGTACATTAAGACAA+CGG | 0.642459 | 6_4:-18371002 | None:intergenic |
GTGGAGCTTACTGTTGGACA+CGG | 0.710106 | 6_4:-18372102 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAAAATTTATGAAGTA+TGG | - | chr6_4:18371276-18371295 | None:intergenic | 10.0% |
!! | TAAAGATTAATTCTTTAAAT+AGG | + | chr6_4:18373595-18373614 | Msa0980340:intron | 10.0% |
!!! | TTGTTTTTTTTCAATTTGTT+AGG | + | chr6_4:18371298-18371317 | Msa0980340:intron | 15.0% |
!! | TAAATATTATACAGAAAGTT+CGG | - | chr6_4:18371815-18371834 | None:intergenic | 15.0% |
!! | GGTTTATAAAAAGTAAATAA+TGG | + | chr6_4:18373467-18373486 | Msa0980340:intron | 15.0% |
!! | AAACTAAAAGGATGAAAAAA+AGG | - | chr6_4:18370800-18370819 | None:intergenic | 20.0% |
!!! | GAAAAGAATTATGTTTGTTT+TGG | + | chr6_4:18371083-18371102 | Msa0980340:intron | 20.0% |
!! | AACTAACAAGCAAAATAATA+TGG | - | chr6_4:18371181-18371200 | None:intergenic | 20.0% |
!! | ACATCATTAATTTCATCTAT+GGG | - | chr6_4:18371208-18371227 | None:intergenic | 20.0% |
!! | AACATCATTAATTTCATCTA+TGG | - | chr6_4:18371209-18371228 | None:intergenic | 20.0% |
!! | AATGTTTATAAAAGAGAACT+TGG | - | chr6_4:18371667-18371686 | None:intergenic | 20.0% |
!! | TGAACATTCAACTTATAAAA+TGG | - | chr6_4:18371929-18371948 | None:intergenic | 20.0% |
!! | GTTCATCTTTACTAAATATT+TGG | + | chr6_4:18371944-18371963 | Msa0980340:intron | 20.0% |
!!! | TTTTTAAAGCTTTGCTTTAA+GGG | + | chr6_4:18372169-18372188 | Msa0980340:intron | 20.0% |
!! | TAATGTAAAACAAATACAGT+AGG | - | chr6_4:18372761-18372780 | None:intergenic | 20.0% |
!!! | TTTATTTTGTATAAACCTGT+TGG | + | chr6_4:18373074-18373093 | Msa0980340:intron | 20.0% |
!!! | TTATTTTGTATAAACCTGTT+GGG | + | chr6_4:18373075-18373094 | Msa0980340:intron | 20.0% |
!! | TTAATTCTTTAAATAGGTCT+TGG | + | chr6_4:18373601-18373620 | Msa0980340:intron | 20.0% |
!!! | AACTCTATAATCTCTTTTTT+AGG | - | chr6_4:18373682-18373701 | None:intergenic | 20.0% |
!! | ATTATAGAGTTTATACAAAG+TGG | + | chr6_4:18373691-18373710 | Msa0980340:intron | 20.0% |
! | ATGACAAATGTTAGTAACTT+AGG | + | chr6_4:18370755-18370774 | Msa0980340:intron | 25.0% |
! | AAAAGGATGAAAAAAAGGTA+AGG | - | chr6_4:18370795-18370814 | None:intergenic | 25.0% |
! | AAAAACTGCAGTAAACTAAA+AGG | - | chr6_4:18370812-18370831 | None:intergenic | 25.0% |
! | TTATTCGTACATTAAGACAA+CGG | - | chr6_4:18371005-18371024 | None:intergenic | 25.0% |
! | ATTAATGATGTTCTATCATG+TGG | + | chr6_4:18371217-18371236 | Msa0980340:intron | 25.0% |
! | TGTCATAATATGTCTTAACA+TGG | - | chr6_4:18371331-18371350 | None:intergenic | 25.0% |
! | TAAGACATATTATGACATTG+TGG | + | chr6_4:18371334-18371353 | Msa0980340:intron | 25.0% |
!!! | TTAGCACTATTTTAACATAG+AGG | - | chr6_4:18371443-18371462 | None:intergenic | 25.0% |
!! | GTTCTCTTTTATAAACATTG+TGG | + | chr6_4:18371668-18371687 | Msa0980340:intron | 25.0% |
!! | CTTTTATAAACATTGTGGTT+AGG | + | chr6_4:18371673-18371692 | Msa0980340:intron | 25.0% |
!! | TTTACTAAATATTTGGAGTG+TGG | + | chr6_4:18371951-18371970 | Msa0980340:intron | 25.0% |
!!! | TATTTTAAATGAGAAGCTTG+TGG | - | chr6_4:18372124-18372143 | None:intergenic | 25.0% |
!!! | CTTTTTAAAGCTTTGCTTTA+AGG | + | chr6_4:18372168-18372187 | Msa0980340:intron | 25.0% |
! | AAGATAGTTGACAACATAAT+CGG | - | chr6_4:18372380-18372399 | None:intergenic | 25.0% |
! | TTAAAAACTAGTTATCGAAG+AGG | - | chr6_4:18373219-18373238 | None:intergenic | 25.0% |
!!! | TCTTCGATAACTAGTTTTTA+AGG | + | chr6_4:18373218-18373237 | Msa0980340:intron | 25.0% |
!!! | GATAACTAGTTTTTAAGGAA+GGG | + | chr6_4:18373223-18373242 | Msa0980340:intron | 25.0% |
! | AAATACTTGGATACTTATCA+GGG | + | chr6_4:18373251-18373270 | Msa0980340:intron | 25.0% |
! | CTAAATCAGTTAATATCAAC+AGG | + | chr6_4:18373446-18373465 | Msa0980340:intron | 25.0% |
! | AATAATGGTTATAGCAATGA+CGG | + | chr6_4:18373482-18373501 | Msa0980340:intron | 25.0% |
! | TATACAAAGTGGATATTGAT+TGG | + | chr6_4:18373702-18373721 | Msa0980340:intron | 25.0% |
!! | ATACAAAGTGGATATTGATT+GGG | + | chr6_4:18373703-18373722 | Msa0980340:intron | 25.0% |
!! | TTAAACTGATTCTCTTCAAA+TGG | - | chr6_4:18374086-18374105 | None:intergenic | 25.0% |
AAAGGGAAGAAAGGATTTAA+AGG | + | chr6_4:18370672-18370691 | Msa0980340:CDS | 30.0% | |
AACATTTGTCATACAAACCA+AGG | - | chr6_4:18370747-18370766 | None:intergenic | 30.0% | |
TATTCGTACATTAAGACAAC+GGG | - | chr6_4:18371004-18371023 | None:intergenic | 30.0% | |
!!! | TGGCTTTTTTTTTCAAGCAT+TGG | + | chr6_4:18371103-18371122 | Msa0980340:intron | 30.0% |
!!! | GGCTTTTTTTTTCAAGCATT+GGG | + | chr6_4:18371104-18371123 | Msa0980340:intron | 30.0% |
!!! | ATTGGGATGATTGTTTTTTC+TGG | + | chr6_4:18371121-18371140 | Msa0980340:intron | 30.0% |
!! | TTGCTATTTGACAACATTGA+TGG | + | chr6_4:18371473-18371492 | Msa0980340:intron | 30.0% |
! | TGCTATTTGACAACATTGAT+GGG | + | chr6_4:18371474-18371493 | Msa0980340:intron | 30.0% |
!! | TCTAAAACAACGTTTTCAAG+CGG | - | chr6_4:18371554-18371573 | None:intergenic | 30.0% |
! | TGCTTTTGTAGATTTAGTGA+AGG | + | chr6_4:18371582-18371601 | Msa0980340:intron | 30.0% |
! | GCTTTTGTAGATTTAGTGAA+GGG | + | chr6_4:18371583-18371602 | Msa0980340:intron | 30.0% |
CTGTTATAAACACTGTGATT+CGG | + | chr6_4:18371641-18371660 | Msa0980340:intron | 30.0% | |
ATAGTAACTGGAGCAAAAAA+AGG | - | chr6_4:18371762-18371781 | None:intergenic | 30.0% | |
! | TTTTTGCTCCAGTTACTATA+AGG | + | chr6_4:18371763-18371782 | Msa0980340:intron | 30.0% |
! | TTTTGCTCCAGTTACTATAA+GGG | + | chr6_4:18371764-18371783 | Msa0980340:intron | 30.0% |
CAAAATATAGTCCATTGACA+TGG | - | chr6_4:18371863-18371882 | None:intergenic | 30.0% | |
CTAGACAATATGAGTAGAAT+AGG | - | chr6_4:18371901-18371920 | None:intergenic | 30.0% | |
AGTTCATTGGTAAGAAAGAA+GGG | + | chr6_4:18371993-18372012 | Msa0980340:CDS | 30.0% | |
GTATAGCAGAGAAATCAAAT+CGG | + | chr6_4:18372044-18372063 | Msa0980340:CDS | 30.0% | |
AGAAATCAAATCGGAATTTG+AGG | + | chr6_4:18372053-18372072 | Msa0980340:CDS | 30.0% | |
GCAAGTCTCAAATGATAATA+TGG | - | chr6_4:18372083-18372102 | None:intergenic | 30.0% | |
GTTACAACATACAAAAGAGA+TGG | - | chr6_4:18372208-18372227 | None:intergenic | 30.0% | |
ATTGTTTGTTTGTCAGTGAA+AGG | - | chr6_4:18372246-18372265 | None:intergenic | 30.0% | |
AGATAGTTGACAACATAATC+GGG | - | chr6_4:18372379-18372398 | None:intergenic | 30.0% | |
TTTACCTTCAAAATGATCTC+TGG | - | chr6_4:18372512-18372531 | None:intergenic | 30.0% | |
!!! | CATTGTTTTTGTTTGTTCAG+AGG | + | chr6_4:18372589-18372608 | Msa0980340:intron | 30.0% |
TGATATTTCATTTCAGAAGC+TGG | + | chr6_4:18372702-18372721 | Msa0980340:intron | 30.0% | |
! | TAATGAAGAGTACATGGTAA+TGG | - | chr6_4:18372886-18372905 | None:intergenic | 30.0% |
TAGTATGACTATGATATGCT+CGG | + | chr6_4:18373167-18373186 | Msa0980340:intron | 30.0% | |
!!! | CGATAACTAGTTTTTAAGGA+AGG | + | chr6_4:18373222-18373241 | Msa0980340:intron | 30.0% |
CAAATACTTGGATACTTATC+AGG | + | chr6_4:18373250-18373269 | Msa0980340:intron | 30.0% | |
AACATGTGAATTAGGATACA+AGG | - | chr6_4:18373308-18373327 | None:intergenic | 30.0% | |
AACAAAATCTCACTTCTCAA+AGG | - | chr6_4:18373343-18373362 | None:intergenic | 30.0% | |
! | AACTGATTTAGTGTGTGTTT+GGG | - | chr6_4:18373437-18373456 | None:intergenic | 30.0% |
! | TAACTGATTTAGTGTGTGTT+TGG | - | chr6_4:18373438-18373457 | None:intergenic | 30.0% |
! | TGGATATTGATTGGGATATA+AGG | + | chr6_4:18373711-18373730 | Msa0980340:intron | 30.0% |
TGATTGGGATATAAGGTAAT+AGG | + | chr6_4:18373718-18373737 | Msa0980340:intron | 30.0% | |
GTAGAGAAGGAAAAAAAAGA+TGG | - | chr6_4:18373771-18373790 | None:intergenic | 30.0% | |
TTTGTAGATGCTCATAAACT+TGG | - | chr6_4:18373811-18373830 | None:intergenic | 30.0% | |
TAGAGAATGAGTGAAATATC+AGG | - | chr6_4:18373909-18373928 | None:intergenic | 30.0% | |
TTTCACTCATTCTCTAGTTA+AGG | + | chr6_4:18373913-18373932 | Msa0980340:intron | 30.0% | |
! | GACTCAAGATTATGATGTTT+TGG | + | chr6_4:18373970-18373989 | Msa0980340:intron | 30.0% |
!!! | TATGATGTTTTGGTTAGTAG+AGG | + | chr6_4:18373980-18373999 | Msa0980340:intron | 30.0% |
GTGTTAACTTATGCTTCATT+AGG | + | chr6_4:18374002-18374021 | Msa0980340:intron | 30.0% | |
TCTCTTCAAATGGAAAACTT+GGG | - | chr6_4:18374076-18374095 | None:intergenic | 30.0% | |
TTCTCTTCAAATGGAAAACT+TGG | - | chr6_4:18374077-18374096 | None:intergenic | 30.0% | |
AATAGACCCATTGATGCTAA+AGG | + | chr6_4:18370654-18370673 | Msa0980340:CDS | 35.0% | |
ATAGACCCATTGATGCTAAA+GGG | + | chr6_4:18370655-18370674 | Msa0980340:CDS | 35.0% | |
TTCTTCCCTTTAGCATCAAT+GGG | - | chr6_4:18370663-18370682 | None:intergenic | 35.0% | |
TTTCTTCCCTTTAGCATCAA+TGG | - | chr6_4:18370664-18370683 | None:intergenic | 35.0% | |
ATTGATGCTAAAGGGAAGAA+AGG | + | chr6_4:18370663-18370682 | Msa0980340:CDS | 35.0% | |
AAGCACTAAGAGATATTGGT+TGG | - | chr6_4:18370721-18370740 | None:intergenic | 35.0% | |
ACCAATATCTCTTAGTGCTT+CGG | + | chr6_4:18370721-18370740 | Msa0980340:intron | 35.0% | |
! | AGTTCTAGTGCTTAATGATG+TGG | + | chr6_4:18370861-18370880 | Msa0980340:intron | 35.0% |
TTACTAACCTGTTCTTCACT+TGG | - | chr6_4:18371033-18371052 | None:intergenic | 35.0% | |
TAAATCTGCAACAGTGACAT+TGG | + | chr6_4:18371057-18371076 | Msa0980340:intron | 35.0% | |
!!! | GATGATTGTTTTTTCTGGCA+GGG | + | chr6_4:18371126-18371145 | Msa0980340:intron | 35.0% |
ATGTTCTATCATGTGGTTGT+TGG | + | chr6_4:18371224-18371243 | Msa0980340:intron | 35.0% | |
TGGTATTGCAAGATGATAGT+AGG | + | chr6_4:18371244-18371263 | Msa0980340:intron | 35.0% | |
TTGCAAGATGATAGTAGGTT+AGG | + | chr6_4:18371249-18371268 | Msa0980340:intron | 35.0% | |
TGTGGTTTAGAAACTCAGAA+AGG | + | chr6_4:18371352-18371371 | Msa0980340:intron | 35.0% | |
GAAACTCAGAAAGGAAGTTT+CGG | + | chr6_4:18371361-18371380 | Msa0980340:intron | 35.0% | |
!!! | AGGAAGTTTCGGTTTTAGAT+CGG | + | chr6_4:18371372-18371391 | Msa0980340:intron | 35.0% |
CTGTGGATCACATAAAATAG+TGG | + | chr6_4:18371404-18371423 | Msa0980340:intron | 35.0% | |
GAACAAATCACTATTGTCTG+TGG | - | chr6_4:18371510-18371529 | None:intergenic | 35.0% | |
!! | CTAAAACAACGTTTTCAAGC+GGG | - | chr6_4:18371553-18371572 | None:intergenic | 35.0% |
!! | CTATATCACTTTCTGGGATT+CGG | + | chr6_4:18371609-18371628 | Msa0980340:intron | 35.0% |
AGTGTTTATAACAGAGACCA+CGG | - | chr6_4:18371635-18371654 | None:intergenic | 35.0% | |
TAACTATCCCATCCATATTC+AGG | - | chr6_4:18371714-18371733 | None:intergenic | 35.0% | |
TGAATATGGATGGGATAGTT+AGG | + | chr6_4:18371713-18371732 | Msa0980340:intron | 35.0% | |
ATTGACATGGTATTCTATGG+TGG | - | chr6_4:18371850-18371869 | None:intergenic | 35.0% | |
ACCATAGAATACCATGTCAA+TGG | + | chr6_4:18371849-18371868 | Msa0980340:intron | 35.0% | |
TCCATTGACATGGTATTCTA+TGG | - | chr6_4:18371853-18371872 | None:intergenic | 35.0% | |
! | GTTGAAGTTTTGCAGTTCAT+TGG | + | chr6_4:18371980-18371999 | Msa0980340:CDS | 35.0% |
CAGTTCATTGGTAAGAAAGA+AGG | + | chr6_4:18371992-18372011 | Msa0980340:CDS | 35.0% | |
AATCAAATCGGAATTTGAGG+AGG | + | chr6_4:18372056-18372075 | Msa0980340:CDS | 35.0% | |
ATCAAATCGGAATTTGAGGA+GGG | + | chr6_4:18372057-18372076 | Msa0980340:CDS | 35.0% | |
TATGTTGTAACGTTGCTTGA+AGG | + | chr6_4:18372217-18372236 | Msa0980340:intron | 35.0% | |
CAAACAAACAATTCCTCCAA+TGG | + | chr6_4:18372254-18372273 | Msa0980340:CDS | 35.0% | |
ATATATTCTTCCCAGTCCAT+TGG | - | chr6_4:18372273-18372292 | None:intergenic | 35.0% | |
TGAAAGAACAAAGCCCAAAA+AGG | + | chr6_4:18372316-18372335 | Msa0980340:CDS | 35.0% | |
! | CTTCAAGTGCAAACCTTTTT+GGG | - | chr6_4:18372332-18372351 | None:intergenic | 35.0% |
! | ACTTCAAGTGCAAACCTTTT+TGG | - | chr6_4:18372333-18372352 | None:intergenic | 35.0% |
CAACCTAAAGCATATGACAT+GGG | - | chr6_4:18372441-18372460 | None:intergenic | 35.0% | |
ACAACCTAAAGCATATGACA+TGG | - | chr6_4:18372442-18372461 | None:intergenic | 35.0% | |
!! | TTTAGGTTGTTTCAAGTTCG+TGG | + | chr6_4:18372452-18372471 | Msa0980340:intron | 35.0% |
AATGTCTTCTGCATAAACTC+AGG | + | chr6_4:18372734-18372753 | Msa0980340:intron | 35.0% | |
ATGTCTTCTGCATAAACTCA+GGG | + | chr6_4:18372735-18372754 | Msa0980340:intron | 35.0% | |
!! | TCTTGGTAATGAAGAGTACA+TGG | - | chr6_4:18372892-18372911 | None:intergenic | 35.0% |
AATCAGCTACTTCATACTCT+TGG | - | chr6_4:18372909-18372928 | None:intergenic | 35.0% | |
AGTACCTTCGATGTGAAAAA+TGG | - | chr6_4:18372984-18373003 | None:intergenic | 35.0% | |
ATAGTCATACTACTCGATGT+GGG | - | chr6_4:18373159-18373178 | None:intergenic | 35.0% | |
!! | AGCTTTGGAACATGTGAATT+AGG | - | chr6_4:18373316-18373335 | None:intergenic | 35.0% |
!! | GAAGTGAGATTTTGTTGTGT+TGG | + | chr6_4:18373347-18373366 | Msa0980340:intron | 35.0% |
! | ACTGATTTAGTGTGTGTTTG+GGG | - | chr6_4:18373436-18373455 | None:intergenic | 35.0% |
AAATGCTGTCAATGTAGAGA+AGG | - | chr6_4:18373784-18373803 | None:intergenic | 35.0% | |
TTCAAATGGAAAACTTGGGT+GGG | - | chr6_4:18374072-18374091 | None:intergenic | 35.0% | |
TGTATTTCTCCATCGTTCTG+CGG | - | chr6_4:18370918-18370937 | None:intergenic | 40.0% | |
AAATGCACCAAGTGAAGAAC+AGG | + | chr6_4:18371023-18371042 | Msa0980340:CDS | 40.0% | |
!!! | GGATGATTGTTTTTTCTGGC+AGG | + | chr6_4:18371125-18371144 | Msa0980340:intron | 40.0% |
! | CAACATTGATGGGCATATCA+TGG | + | chr6_4:18371484-18371503 | Msa0980340:intron | 40.0% |
AGGGCTTCTATATCACTTTC+TGG | + | chr6_4:18371602-18371621 | Msa0980340:intron | 40.0% | |
GGGCTTCTATATCACTTTCT+GGG | + | chr6_4:18371603-18371622 | Msa0980340:intron | 40.0% | |
!! | TATTCAGGCTAGGAAGTACT+TGG | - | chr6_4:18371699-18371718 | None:intergenic | 40.0% |
AGTACTTCCTAGCCTGAATA+TGG | + | chr6_4:18371699-18371718 | Msa0980340:intron | 40.0% | |
TTCCTAGCCTGAATATGGAT+GGG | + | chr6_4:18371704-18371723 | Msa0980340:intron | 40.0% | |
GTCATGCCAAAGACATTCAT+AGG | + | chr6_4:18371786-18371805 | Msa0980340:intron | 40.0% | |
CGGAATCCTATGAATGTCTT+TGG | - | chr6_4:18371795-18371814 | None:intergenic | 40.0% | |
AAACAATTCCTCCAATGGAC+TGG | + | chr6_4:18372259-18372278 | Msa0980340:CDS | 40.0% | |
! | AACAATTCCTCCAATGGACT+GGG | + | chr6_4:18372260-18372279 | Msa0980340:CDS | 40.0% |
AGTTGACAACATAATCGGGT+AGG | - | chr6_4:18372375-18372394 | None:intergenic | 40.0% | |
TCTCCCATGTCATATGCTTT+AGG | + | chr6_4:18372435-18372454 | Msa0980340:intron | 40.0% | |
! | TCCTCCAGAGATCATTTTGA+AGG | + | chr6_4:18372505-18372524 | Msa0980340:CDS | 40.0% |
ACCTTCAAAATGATCTCTGG+AGG | - | chr6_4:18372509-18372528 | None:intergenic | 40.0% | |
TTATGAGCTACTGAGGAAAC+TGG | + | chr6_4:18372617-18372636 | Msa0980340:CDS | 40.0% | |
TAAAGCATGAAGTCTGCCAT+TGG | + | chr6_4:18372649-18372668 | Msa0980340:CDS | 40.0% | |
AAAGCATGAAGTCTGCCATT+GGG | + | chr6_4:18372650-18372669 | Msa0980340:CDS | 40.0% | |
TTACATAGTATGCTGCCCAA+TGG | - | chr6_4:18372668-18372687 | None:intergenic | 40.0% | |
!! | GAAGAGTACATGGTAATGGT+GGG | - | chr6_4:18372882-18372901 | None:intergenic | 40.0% |
!! | TGAAGAGTACATGGTAATGG+TGG | - | chr6_4:18372883-18372902 | None:intergenic | 40.0% |
!!! | AAGGCCATTTTTCACATCGA+AGG | + | chr6_4:18372977-18372996 | Msa0980340:CDS | 40.0% |
TCCTGAATGTGTGCAATGAT+AGG | + | chr6_4:18373013-18373032 | Msa0980340:intron | 40.0% | |
TCCTATCATTGCACACATTC+AGG | - | chr6_4:18373017-18373036 | None:intergenic | 40.0% | |
TGATAGGGACTTGGGTATTA+TGG | + | chr6_4:18373119-18373138 | Msa0980340:intron | 40.0% | |
GATAGGGACTTGGGTATTAT+GGG | + | chr6_4:18373120-18373139 | Msa0980340:intron | 40.0% | |
CATAGTCATACTACTCGATG+TGG | - | chr6_4:18373160-18373179 | None:intergenic | 40.0% | |
AGGAAGGGTTCTCAAATACT+TGG | + | chr6_4:18373238-18373257 | Msa0980340:intron | 40.0% | |
CATGAGTTTCAAATCGATCC+TGG | - | chr6_4:18373555-18373574 | None:intergenic | 40.0% | |
ATTTGTCTCTGCTCTCAATC+AGG | + | chr6_4:18373635-18373654 | Msa0980340:intron | 40.0% | |
TTTGTCTCTGCTCTCAATCA+GGG | + | chr6_4:18373636-18373655 | Msa0980340:intron | 40.0% | |
CTCTACATTGACAGCATTTG+TGG | + | chr6_4:18373785-18373804 | Msa0980340:intron | 40.0% | |
TCCTTCCTCATTGCAACATT+TGG | + | chr6_4:18373831-18373850 | Msa0980340:intron | 40.0% | |
TTCAGCCAAATGTTGCAATG+AGG | - | chr6_4:18373839-18373858 | None:intergenic | 40.0% | |
TCATTGCAACATTTGGCTGA+AGG | + | chr6_4:18373838-18373857 | Msa0980340:intron | 40.0% | |
TCAAATGGAAAACTTGGGTG+GGG | - | chr6_4:18374071-18374090 | None:intergenic | 40.0% | |
CTTCAAATGGAAAACTTGGG+TGG | - | chr6_4:18374073-18374092 | None:intergenic | 40.0% | |
! | GCCGAAGCACTAAGAGATAT+TGG | - | chr6_4:18370725-18370744 | None:intergenic | 45.0% |
GTACATTAAGACAACGGGAG+CGG | - | chr6_4:18370999-18371018 | None:intergenic | 45.0% | |
CTTCCTAGCCTGAATATGGA+TGG | + | chr6_4:18371703-18371722 | Msa0980340:intron | 45.0% | |
ATCCCATCCATATTCAGGCT+AGG | - | chr6_4:18371709-18371728 | None:intergenic | 45.0% | |
GGCATGACCCTTATAGTAAC+TGG | - | chr6_4:18371774-18371793 | None:intergenic | 45.0% | |
AAGCTTGTGGAGCTTACTGT+TGG | - | chr6_4:18372111-18372130 | None:intergenic | 45.0% | |
TATTCTTCCCAGTCCATTGG+AGG | - | chr6_4:18372270-18372289 | None:intergenic | 45.0% | |
! | GGCTACTTTATGAGCTACTG+AGG | + | chr6_4:18372610-18372629 | Msa0980340:CDS | 45.0% |
! | TTTTTCCCCCTCATTGAACC+AGG | + | chr6_4:18372931-18372950 | Msa0980340:intron | 45.0% |
ATGTTCCTGGTTCAATGAGG+GGG | - | chr6_4:18372939-18372958 | None:intergenic | 45.0% | |
GATGTTCCTGGTTCAATGAG+GGG | - | chr6_4:18372940-18372959 | None:intergenic | 45.0% | |
CGATGTTCCTGGTTCAATGA+GGG | - | chr6_4:18372941-18372960 | None:intergenic | 45.0% | |
CCTCATTGAACCAGGAACAT+CGG | + | chr6_4:18372939-18372958 | Msa0980340:intron | 45.0% | |
GAAAAATGGCCTTCTGTCCA+AGG | - | chr6_4:18372970-18372989 | None:intergenic | 45.0% | |
TTGGGAATTCTACTCGCCAT+GGG | + | chr6_4:18373093-18373112 | Msa0980340:intron | 45.0% | |
GGTGTAGCATCTAAGTCGTT+TGG | + | chr6_4:18373188-18373207 | Msa0980340:intron | 45.0% | |
ATCAGTCTAGACGCGTGTTT+GGG | + | chr6_4:18373278-18373297 | Msa0980340:intron | 45.0% | |
!! | CAATGACGGATAGTGTGTCA+TGG | + | chr6_4:18373496-18373515 | Msa0980340:intron | 45.0% |
GAGTAGGTTCCTTAAACACG+TGG | + | chr6_4:18373528-18373547 | Msa0980340:intron | 45.0% | |
AAATAGGTCTTGGTACCTCG+AGG | + | chr6_4:18373611-18373630 | Msa0980340:intron | 45.0% | |
AATAGGTCTTGGTACCTCGA+GGG | + | chr6_4:18373612-18373631 | Msa0980340:intron | 45.0% | |
CTGCTCTCAATCAGGGAATA+CGG | + | chr6_4:18373643-18373662 | Msa0980340:intron | 45.0% | |
GCCAAATGTTGCAATGAGGA+AGG | - | chr6_4:18373835-18373854 | None:intergenic | 45.0% | |
TGCAACATTTGGCTGAAGGA+TGG | + | chr6_4:18373842-18373861 | Msa0980340:intron | 45.0% | |
ATCTCTTAGTGCTTCGGCCT+TGG | + | chr6_4:18370727-18370746 | Msa0980340:intron | 50.0% | |
ACATTCTCTCCGCAGAACGA+TGG | + | chr6_4:18370906-18370925 | Msa0980340:CDS | 50.0% | |
ATTAAGACAACGGGAGCGGA+TGG | - | chr6_4:18370995-18371014 | None:intergenic | 50.0% | |
TAGATCGGCGTTGTCAACTG+TGG | + | chr6_4:18371387-18371406 | Msa0980340:intron | 50.0% | |
GAAGGGCTACAACTTCCTTC+TGG | + | chr6_4:18372010-18372029 | Msa0980340:CDS | 50.0% | |
ATACGAGCAGCGAAACCAGA+AGG | - | chr6_4:18372028-18372047 | None:intergenic | 50.0% | |
GTGGAGCTTACTGTTGGACA+CGG | - | chr6_4:18372105-18372124 | None:intergenic | 50.0% | |
!! | ACATGGTAATGGTGGGAGGA+GGG | - | chr6_4:18372875-18372894 | None:intergenic | 50.0% |
!! | TACATGGTAATGGTGGGAGG+AGG | - | chr6_4:18372876-18372895 | None:intergenic | 50.0% |
!! | GAGTACATGGTAATGGTGGG+AGG | - | chr6_4:18372879-18372898 | None:intergenic | 50.0% |
CCGATGTTCCTGGTTCAATG+AGG | - | chr6_4:18372942-18372961 | None:intergenic | 50.0% | |
TGGCGAGTAGAATTCCCAAC+AGG | - | chr6_4:18373092-18373111 | None:intergenic | 50.0% | |
GTTGGGAATTCTACTCGCCA+TGG | + | chr6_4:18373092-18373111 | Msa0980340:intron | 50.0% | |
TGGGAATTCTACTCGCCATG+GGG | + | chr6_4:18373094-18373113 | Msa0980340:intron | 50.0% | |
!! | ATGGGGGTTGATAGGGACTT+GGG | + | chr6_4:18373111-18373130 | Msa0980340:intron | 50.0% |
CTCGATGTGGGACTTAGACA+GGG | - | chr6_4:18373147-18373166 | None:intergenic | 50.0% | |
ACTCGATGTGGGACTTAGAC+AGG | - | chr6_4:18373148-18373167 | None:intergenic | 50.0% | |
CATCAGTCTAGACGCGTGTT+TGG | + | chr6_4:18373277-18373296 | Msa0980340:intron | 50.0% | |
CTTCTCAAAGGACGCAGCTT+TGG | - | chr6_4:18373331-18373350 | None:intergenic | 50.0% | |
GACGGATAGTGTGTCATGGT+CGG | + | chr6_4:18373500-18373519 | Msa0980340:intron | 50.0% | |
GTTCCTTAAACACGTGGTCC+AGG | + | chr6_4:18373534-18373553 | Msa0980340:intron | 50.0% | |
GATCCTGGACCACGTGTTTA+AGG | - | chr6_4:18373540-18373559 | None:intergenic | 50.0% | |
TGGAAAACTTGGGTGGGGAT+GGG | - | chr6_4:18374066-18374085 | None:intergenic | 50.0% | |
ATGGAAAACTTGGGTGGGGA+TGG | - | chr6_4:18374067-18374086 | None:intergenic | 50.0% | |
!! | ATGGTAATGGTGGGAGGAGG+GGG | - | chr6_4:18372873-18372892 | None:intergenic | 55.0% |
!! | CATGGTAATGGTGGGAGGAG+GGG | - | chr6_4:18372874-18372893 | None:intergenic | 55.0% |
GGGAATTCTACTCGCCATGG+GGG | + | chr6_4:18373095-18373114 | Msa0980340:intron | 55.0% | |
! | TACTCGCCATGGGGGTTGAT+AGG | + | chr6_4:18373103-18373122 | Msa0980340:intron | 55.0% |
!! | ACTCGCCATGGGGGTTGATA+GGG | + | chr6_4:18373104-18373123 | Msa0980340:intron | 55.0% |
CAAGTCCCTATCAACCCCCA+TGG | - | chr6_4:18373112-18373131 | None:intergenic | 55.0% | |
!! | CATGGGGGTTGATAGGGACT+TGG | + | chr6_4:18373110-18373129 | Msa0980340:intron | 55.0% |
GTCATGGTCGGCAGATGAGT+AGG | + | chr6_4:18373512-18373531 | Msa0980340:intron | 55.0% | |
GAGCAGAGACAAATCCCTCG+AGG | - | chr6_4:18373629-18373648 | None:intergenic | 55.0% | |
GGAAAACTTGGGTGGGGATG+GGG | - | chr6_4:18374065-18374084 | None:intergenic | 55.0% | |
!! | CACTTTCTGGGATTCGGCCG+TGG | + | chr6_4:18371615-18371634 | Msa0980340:intron | 60.0% |
CAAGGCGCATCCGATGTTCC+TGG | - | chr6_4:18372952-18372971 | None:intergenic | 60.0% | |
CAGGAACATCGGATGCGCCT+TGG | + | chr6_4:18372950-18372969 | Msa0980340:intron | 60.0% | |
TCGGATGCGCCTTGGACAGA+AGG | + | chr6_4:18372958-18372977 | Msa0980340:CDS | 60.0% | |
AAACTTGGGTGGGGATGGGG+AGG | - | chr6_4:18374062-18374081 | None:intergenic | 60.0% | |
TTGGGTGGGGATGGGGAGGT+AGG | - | chr6_4:18374058-18374077 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 18370645 | 18374183 | 18370645 | ID=Msa0980340;Name=Msa0980340 |
chr6_4 | mRNA | 18370645 | 18374183 | 18370645 | ID=Msa0980340-mRNA-1;Parent=Msa0980340;Name=Msa0980340-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.71|0.75|0.87|0.85|0.87|8|0|222 |
chr6_4 | exon | 18370645 | 18370693 | 18370645 | ID=Msa0980340-mRNA-1:exon:5688;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18370863 | 18371044 | 18370863 | ID=Msa0980340-mRNA-1:exon:5689;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18371977 | 18372113 | 18371977 | ID=Msa0980340-mRNA-1:exon:5690;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18372239 | 18372337 | 18372239 | ID=Msa0980340-mRNA-1:exon:5691;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18372457 | 18372526 | 18372457 | ID=Msa0980340-mRNA-1:exon:5692;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18372609 | 18372683 | 18372609 | ID=Msa0980340-mRNA-1:exon:5693;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18372953 | 18372998 | 18372953 | ID=Msa0980340-mRNA-1:exon:5694;Parent=Msa0980340-mRNA-1 |
chr6_4 | exon | 18374176 | 18374183 | 18374176 | ID=Msa0980340-mRNA-1:exon:5695;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18370645 | 18370693 | 18370645 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18370863 | 18371044 | 18370863 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18371977 | 18372113 | 18371977 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18372239 | 18372337 | 18372239 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18372457 | 18372526 | 18372457 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18372609 | 18372683 | 18372609 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18372953 | 18372998 | 18372953 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
chr6_4 | CDS | 18374176 | 18374183 | 18374176 | ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1 |
Gene Sequence |
Protein sequence |