AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980340 MtrunA17_Chr6g0460841 97.748 222 5 0 1 222 117 338 4.93e-162 451
Msa0980340 MtrunA17_Chr6g0478631 96.847 222 7 0 1 222 117 338 2.63e-161 449
Msa0980340 MtrunA17_Chr5g0404521 37.324 142 88 1 12 153 531 671 7.15e-30 116
Msa0980340 MtrunA17_Chr3g0145801 34.831 178 114 2 16 193 553 728 8.57e-28 110
Msa0980340 MtrunA17_Chr3g0125031 33.051 118 79 0 1 118 102 219 2.17e-16 76.6
Msa0980340 MtrunA17_Chr4g0057341 40.230 87 51 1 16 101 115 201 8.00e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980340 AT5G27740.1 83.784 222 36 0 1 222 117 338 1.21e-142 402
Msa0980340 AT1G21690.2 36.538 104 66 0 15 118 104 207 1.99e-15 74.3
Msa0980340 AT1G21690.1 38.384 99 61 0 15 113 116 214 2.27e-15 74.3
Msa0980340 AT1G21690.4 38.384 99 61 0 15 113 109 207 2.37e-15 73.9
Msa0980340 AT1G21690.3 36.538 104 66 0 15 118 116 219 2.49e-15 73.9
Msa0980340 AT1G63160.1 31.356 118 78 3 16 132 115 230 2.14e-12 65.5

Find 43 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTGATTAAAGCATTAA+TGG 0.171852 6_4:+18374162 Msa0980340:intron
GCAAGTCTCAAATGATAATA+TGG 0.323719 6_4:-18372080 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.340018 6_4:+18370672 Msa0980340:CDS
TTTCTTCCCTTTAGCATCAA+TGG 0.349194 6_4:-18370661 None:intergenic
TTCTTCCCTTTAGCATCAAT+GGG 0.356459 6_4:-18370660 None:intergenic
GAAGGGCTACAACTTCCTTC+TGG 0.367171 6_4:+18372010 Msa0980340:CDS
TGAAAGAACAAAGCCCAAAA+AGG 0.384186 6_4:+18372316 Msa0980340:CDS
TTATGAGCTACTGAGGAAAC+TGG 0.397333 6_4:+18372617 Msa0980340:CDS
TTTACCTTCAAAATGATCTC+TGG 0.416432 6_4:-18372509 None:intergenic
AAATGCACCAAGTGAAGAAC+AGG 0.440498 6_4:+18371023 Msa0980340:CDS
CAGTTCATTGGTAAGAAAGA+AGG 0.440654 6_4:+18371992 Msa0980340:CDS
AATAGACCCATTGATGCTAA+AGG 0.464660 6_4:+18370654 Msa0980340:CDS
AGAAATCAAATCGGAATTTG+AGG 0.467465 6_4:+18372053 Msa0980340:CDS
TATTCGTACATTAAGACAAC+GGG 0.467729 6_4:-18371001 None:intergenic
ATTGTTTGTTTGTCAGTGAA+AGG 0.479733 6_4:-18372243 None:intergenic
ATAGACCCATTGATGCTAAA+GGG 0.483185 6_4:+18370655 Msa0980340:CDS
TTTAGGTTGTTTCAAGTTCG+TGG 0.487361 6_4:+18372452 Msa0980340:intron
ATATATTCTTCCCAGTCCAT+TGG 0.489328 6_4:-18372270 None:intergenic
TTACTAACCTGTTCTTCACT+TGG 0.496208 6_4:-18371030 None:intergenic
AGTTCTAGTGCTTAATGATG+TGG 0.505558 6_4:+18370861 Msa0980340:intron
AAACAATTCCTCCAATGGAC+TGG 0.507805 6_4:+18372259 Msa0980340:CDS
ATTGATGCTAAAGGGAAGAA+AGG 0.517548 6_4:+18370663 Msa0980340:CDS
TCGGATGCGCCTTGGACAGA+AGG 0.522214 6_4:+18372958 Msa0980340:CDS
AAAGCATGAAGTCTGCCATT+GGG 0.522773 6_4:+18372650 Msa0980340:CDS
TAAAGCATGAAGTCTGCCAT+TGG 0.529099 6_4:+18372649 Msa0980340:CDS
TATTCTTCCCAGTCCATTGG+AGG 0.537168 6_4:-18372267 None:intergenic
CAAACAAACAATTCCTCCAA+TGG 0.546977 6_4:+18372254 Msa0980340:CDS
AGTTCATTGGTAAGAAAGAA+GGG 0.571624 6_4:+18371993 Msa0980340:CDS
GTACATTAAGACAACGGGAG+CGG 0.575694 6_4:-18370996 None:intergenic
ATTAAGACAACGGGAGCGGA+TGG 0.578928 6_4:-18370992 None:intergenic
ACATTCTCTCCGCAGAACGA+TGG 0.581717 6_4:+18370906 Msa0980340:CDS
AACAATTCCTCCAATGGACT+GGG 0.583344 6_4:+18372260 Msa0980340:CDS
GTATAGCAGAGAAATCAAAT+CGG 0.601405 6_4:+18372044 Msa0980340:CDS
ACCTTCAAAATGATCTCTGG+AGG 0.601868 6_4:-18372506 None:intergenic
TGTATTTCTCCATCGTTCTG+CGG 0.603903 6_4:-18370915 None:intergenic
CCTCATTGAACCAGGAACAT+CGG 0.605635 6_4:+18372939 Msa0980340:intron
GGCTACTTTATGAGCTACTG+AGG 0.611900 6_4:+18372610 Msa0980340:CDS
TTACATAGTATGCTGCCCAA+TGG 0.622267 6_4:-18372665 None:intergenic
ATCAAATCGGAATTTGAGGA+GGG 0.625589 6_4:+18372057 Msa0980340:CDS
AATCAAATCGGAATTTGAGG+AGG 0.632114 6_4:+18372056 Msa0980340:CDS
ATACGAGCAGCGAAACCAGA+AGG 0.638037 6_4:-18372025 None:intergenic
TTATTCGTACATTAAGACAA+CGG 0.642459 6_4:-18371002 None:intergenic
GTGGAGCTTACTGTTGGACA+CGG 0.710106 6_4:-18372102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATTTATGAAGTA+TGG - chr6_4:18371276-18371295 None:intergenic 10.0%
!! TAAAGATTAATTCTTTAAAT+AGG + chr6_4:18373595-18373614 Msa0980340:intron 10.0%
!!! TTGTTTTTTTTCAATTTGTT+AGG + chr6_4:18371298-18371317 Msa0980340:intron 15.0%
!! TAAATATTATACAGAAAGTT+CGG - chr6_4:18371815-18371834 None:intergenic 15.0%
!! GGTTTATAAAAAGTAAATAA+TGG + chr6_4:18373467-18373486 Msa0980340:intron 15.0%
!! AAACTAAAAGGATGAAAAAA+AGG - chr6_4:18370800-18370819 None:intergenic 20.0%
!!! GAAAAGAATTATGTTTGTTT+TGG + chr6_4:18371083-18371102 Msa0980340:intron 20.0%
!! AACTAACAAGCAAAATAATA+TGG - chr6_4:18371181-18371200 None:intergenic 20.0%
!! ACATCATTAATTTCATCTAT+GGG - chr6_4:18371208-18371227 None:intergenic 20.0%
!! AACATCATTAATTTCATCTA+TGG - chr6_4:18371209-18371228 None:intergenic 20.0%
!! AATGTTTATAAAAGAGAACT+TGG - chr6_4:18371667-18371686 None:intergenic 20.0%
!! TGAACATTCAACTTATAAAA+TGG - chr6_4:18371929-18371948 None:intergenic 20.0%
!! GTTCATCTTTACTAAATATT+TGG + chr6_4:18371944-18371963 Msa0980340:intron 20.0%
!!! TTTTTAAAGCTTTGCTTTAA+GGG + chr6_4:18372169-18372188 Msa0980340:intron 20.0%
!! TAATGTAAAACAAATACAGT+AGG - chr6_4:18372761-18372780 None:intergenic 20.0%
!!! TTTATTTTGTATAAACCTGT+TGG + chr6_4:18373074-18373093 Msa0980340:intron 20.0%
!!! TTATTTTGTATAAACCTGTT+GGG + chr6_4:18373075-18373094 Msa0980340:intron 20.0%
!! TTAATTCTTTAAATAGGTCT+TGG + chr6_4:18373601-18373620 Msa0980340:intron 20.0%
!!! AACTCTATAATCTCTTTTTT+AGG - chr6_4:18373682-18373701 None:intergenic 20.0%
!! ATTATAGAGTTTATACAAAG+TGG + chr6_4:18373691-18373710 Msa0980340:intron 20.0%
! ATGACAAATGTTAGTAACTT+AGG + chr6_4:18370755-18370774 Msa0980340:intron 25.0%
! AAAAGGATGAAAAAAAGGTA+AGG - chr6_4:18370795-18370814 None:intergenic 25.0%
! AAAAACTGCAGTAAACTAAA+AGG - chr6_4:18370812-18370831 None:intergenic 25.0%
! TTATTCGTACATTAAGACAA+CGG - chr6_4:18371005-18371024 None:intergenic 25.0%
! ATTAATGATGTTCTATCATG+TGG + chr6_4:18371217-18371236 Msa0980340:intron 25.0%
! TGTCATAATATGTCTTAACA+TGG - chr6_4:18371331-18371350 None:intergenic 25.0%
! TAAGACATATTATGACATTG+TGG + chr6_4:18371334-18371353 Msa0980340:intron 25.0%
!!! TTAGCACTATTTTAACATAG+AGG - chr6_4:18371443-18371462 None:intergenic 25.0%
!! GTTCTCTTTTATAAACATTG+TGG + chr6_4:18371668-18371687 Msa0980340:intron 25.0%
!! CTTTTATAAACATTGTGGTT+AGG + chr6_4:18371673-18371692 Msa0980340:intron 25.0%
!! TTTACTAAATATTTGGAGTG+TGG + chr6_4:18371951-18371970 Msa0980340:intron 25.0%
!!! TATTTTAAATGAGAAGCTTG+TGG - chr6_4:18372124-18372143 None:intergenic 25.0%
!!! CTTTTTAAAGCTTTGCTTTA+AGG + chr6_4:18372168-18372187 Msa0980340:intron 25.0%
! AAGATAGTTGACAACATAAT+CGG - chr6_4:18372380-18372399 None:intergenic 25.0%
! TTAAAAACTAGTTATCGAAG+AGG - chr6_4:18373219-18373238 None:intergenic 25.0%
!!! TCTTCGATAACTAGTTTTTA+AGG + chr6_4:18373218-18373237 Msa0980340:intron 25.0%
!!! GATAACTAGTTTTTAAGGAA+GGG + chr6_4:18373223-18373242 Msa0980340:intron 25.0%
! AAATACTTGGATACTTATCA+GGG + chr6_4:18373251-18373270 Msa0980340:intron 25.0%
! CTAAATCAGTTAATATCAAC+AGG + chr6_4:18373446-18373465 Msa0980340:intron 25.0%
! AATAATGGTTATAGCAATGA+CGG + chr6_4:18373482-18373501 Msa0980340:intron 25.0%
! TATACAAAGTGGATATTGAT+TGG + chr6_4:18373702-18373721 Msa0980340:intron 25.0%
!! ATACAAAGTGGATATTGATT+GGG + chr6_4:18373703-18373722 Msa0980340:intron 25.0%
!! TTAAACTGATTCTCTTCAAA+TGG - chr6_4:18374086-18374105 None:intergenic 25.0%
AAAGGGAAGAAAGGATTTAA+AGG + chr6_4:18370672-18370691 Msa0980340:CDS 30.0%
AACATTTGTCATACAAACCA+AGG - chr6_4:18370747-18370766 None:intergenic 30.0%
TATTCGTACATTAAGACAAC+GGG - chr6_4:18371004-18371023 None:intergenic 30.0%
!!! TGGCTTTTTTTTTCAAGCAT+TGG + chr6_4:18371103-18371122 Msa0980340:intron 30.0%
!!! GGCTTTTTTTTTCAAGCATT+GGG + chr6_4:18371104-18371123 Msa0980340:intron 30.0%
!!! ATTGGGATGATTGTTTTTTC+TGG + chr6_4:18371121-18371140 Msa0980340:intron 30.0%
!! TTGCTATTTGACAACATTGA+TGG + chr6_4:18371473-18371492 Msa0980340:intron 30.0%
! TGCTATTTGACAACATTGAT+GGG + chr6_4:18371474-18371493 Msa0980340:intron 30.0%
!! TCTAAAACAACGTTTTCAAG+CGG - chr6_4:18371554-18371573 None:intergenic 30.0%
! TGCTTTTGTAGATTTAGTGA+AGG + chr6_4:18371582-18371601 Msa0980340:intron 30.0%
! GCTTTTGTAGATTTAGTGAA+GGG + chr6_4:18371583-18371602 Msa0980340:intron 30.0%
CTGTTATAAACACTGTGATT+CGG + chr6_4:18371641-18371660 Msa0980340:intron 30.0%
ATAGTAACTGGAGCAAAAAA+AGG - chr6_4:18371762-18371781 None:intergenic 30.0%
! TTTTTGCTCCAGTTACTATA+AGG + chr6_4:18371763-18371782 Msa0980340:intron 30.0%
! TTTTGCTCCAGTTACTATAA+GGG + chr6_4:18371764-18371783 Msa0980340:intron 30.0%
CAAAATATAGTCCATTGACA+TGG - chr6_4:18371863-18371882 None:intergenic 30.0%
CTAGACAATATGAGTAGAAT+AGG - chr6_4:18371901-18371920 None:intergenic 30.0%
AGTTCATTGGTAAGAAAGAA+GGG + chr6_4:18371993-18372012 Msa0980340:CDS 30.0%
GTATAGCAGAGAAATCAAAT+CGG + chr6_4:18372044-18372063 Msa0980340:CDS 30.0%
AGAAATCAAATCGGAATTTG+AGG + chr6_4:18372053-18372072 Msa0980340:CDS 30.0%
GCAAGTCTCAAATGATAATA+TGG - chr6_4:18372083-18372102 None:intergenic 30.0%
GTTACAACATACAAAAGAGA+TGG - chr6_4:18372208-18372227 None:intergenic 30.0%
ATTGTTTGTTTGTCAGTGAA+AGG - chr6_4:18372246-18372265 None:intergenic 30.0%
AGATAGTTGACAACATAATC+GGG - chr6_4:18372379-18372398 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+TGG - chr6_4:18372512-18372531 None:intergenic 30.0%
!!! CATTGTTTTTGTTTGTTCAG+AGG + chr6_4:18372589-18372608 Msa0980340:intron 30.0%
TGATATTTCATTTCAGAAGC+TGG + chr6_4:18372702-18372721 Msa0980340:intron 30.0%
! TAATGAAGAGTACATGGTAA+TGG - chr6_4:18372886-18372905 None:intergenic 30.0%
TAGTATGACTATGATATGCT+CGG + chr6_4:18373167-18373186 Msa0980340:intron 30.0%
!!! CGATAACTAGTTTTTAAGGA+AGG + chr6_4:18373222-18373241 Msa0980340:intron 30.0%
CAAATACTTGGATACTTATC+AGG + chr6_4:18373250-18373269 Msa0980340:intron 30.0%
AACATGTGAATTAGGATACA+AGG - chr6_4:18373308-18373327 None:intergenic 30.0%
AACAAAATCTCACTTCTCAA+AGG - chr6_4:18373343-18373362 None:intergenic 30.0%
! AACTGATTTAGTGTGTGTTT+GGG - chr6_4:18373437-18373456 None:intergenic 30.0%
! TAACTGATTTAGTGTGTGTT+TGG - chr6_4:18373438-18373457 None:intergenic 30.0%
! TGGATATTGATTGGGATATA+AGG + chr6_4:18373711-18373730 Msa0980340:intron 30.0%
TGATTGGGATATAAGGTAAT+AGG + chr6_4:18373718-18373737 Msa0980340:intron 30.0%
GTAGAGAAGGAAAAAAAAGA+TGG - chr6_4:18373771-18373790 None:intergenic 30.0%
TTTGTAGATGCTCATAAACT+TGG - chr6_4:18373811-18373830 None:intergenic 30.0%
TAGAGAATGAGTGAAATATC+AGG - chr6_4:18373909-18373928 None:intergenic 30.0%
TTTCACTCATTCTCTAGTTA+AGG + chr6_4:18373913-18373932 Msa0980340:intron 30.0%
! GACTCAAGATTATGATGTTT+TGG + chr6_4:18373970-18373989 Msa0980340:intron 30.0%
!!! TATGATGTTTTGGTTAGTAG+AGG + chr6_4:18373980-18373999 Msa0980340:intron 30.0%
GTGTTAACTTATGCTTCATT+AGG + chr6_4:18374002-18374021 Msa0980340:intron 30.0%
TCTCTTCAAATGGAAAACTT+GGG - chr6_4:18374076-18374095 None:intergenic 30.0%
TTCTCTTCAAATGGAAAACT+TGG - chr6_4:18374077-18374096 None:intergenic 30.0%
AATAGACCCATTGATGCTAA+AGG + chr6_4:18370654-18370673 Msa0980340:CDS 35.0%
ATAGACCCATTGATGCTAAA+GGG + chr6_4:18370655-18370674 Msa0980340:CDS 35.0%
TTCTTCCCTTTAGCATCAAT+GGG - chr6_4:18370663-18370682 None:intergenic 35.0%
TTTCTTCCCTTTAGCATCAA+TGG - chr6_4:18370664-18370683 None:intergenic 35.0%
ATTGATGCTAAAGGGAAGAA+AGG + chr6_4:18370663-18370682 Msa0980340:CDS 35.0%
AAGCACTAAGAGATATTGGT+TGG - chr6_4:18370721-18370740 None:intergenic 35.0%
ACCAATATCTCTTAGTGCTT+CGG + chr6_4:18370721-18370740 Msa0980340:intron 35.0%
! AGTTCTAGTGCTTAATGATG+TGG + chr6_4:18370861-18370880 Msa0980340:intron 35.0%
TTACTAACCTGTTCTTCACT+TGG - chr6_4:18371033-18371052 None:intergenic 35.0%
TAAATCTGCAACAGTGACAT+TGG + chr6_4:18371057-18371076 Msa0980340:intron 35.0%
!!! GATGATTGTTTTTTCTGGCA+GGG + chr6_4:18371126-18371145 Msa0980340:intron 35.0%
ATGTTCTATCATGTGGTTGT+TGG + chr6_4:18371224-18371243 Msa0980340:intron 35.0%
TGGTATTGCAAGATGATAGT+AGG + chr6_4:18371244-18371263 Msa0980340:intron 35.0%
TTGCAAGATGATAGTAGGTT+AGG + chr6_4:18371249-18371268 Msa0980340:intron 35.0%
TGTGGTTTAGAAACTCAGAA+AGG + chr6_4:18371352-18371371 Msa0980340:intron 35.0%
GAAACTCAGAAAGGAAGTTT+CGG + chr6_4:18371361-18371380 Msa0980340:intron 35.0%
!!! AGGAAGTTTCGGTTTTAGAT+CGG + chr6_4:18371372-18371391 Msa0980340:intron 35.0%
CTGTGGATCACATAAAATAG+TGG + chr6_4:18371404-18371423 Msa0980340:intron 35.0%
GAACAAATCACTATTGTCTG+TGG - chr6_4:18371510-18371529 None:intergenic 35.0%
!! CTAAAACAACGTTTTCAAGC+GGG - chr6_4:18371553-18371572 None:intergenic 35.0%
!! CTATATCACTTTCTGGGATT+CGG + chr6_4:18371609-18371628 Msa0980340:intron 35.0%
AGTGTTTATAACAGAGACCA+CGG - chr6_4:18371635-18371654 None:intergenic 35.0%
TAACTATCCCATCCATATTC+AGG - chr6_4:18371714-18371733 None:intergenic 35.0%
TGAATATGGATGGGATAGTT+AGG + chr6_4:18371713-18371732 Msa0980340:intron 35.0%
ATTGACATGGTATTCTATGG+TGG - chr6_4:18371850-18371869 None:intergenic 35.0%
ACCATAGAATACCATGTCAA+TGG + chr6_4:18371849-18371868 Msa0980340:intron 35.0%
TCCATTGACATGGTATTCTA+TGG - chr6_4:18371853-18371872 None:intergenic 35.0%
! GTTGAAGTTTTGCAGTTCAT+TGG + chr6_4:18371980-18371999 Msa0980340:CDS 35.0%
CAGTTCATTGGTAAGAAAGA+AGG + chr6_4:18371992-18372011 Msa0980340:CDS 35.0%
AATCAAATCGGAATTTGAGG+AGG + chr6_4:18372056-18372075 Msa0980340:CDS 35.0%
ATCAAATCGGAATTTGAGGA+GGG + chr6_4:18372057-18372076 Msa0980340:CDS 35.0%
TATGTTGTAACGTTGCTTGA+AGG + chr6_4:18372217-18372236 Msa0980340:intron 35.0%
CAAACAAACAATTCCTCCAA+TGG + chr6_4:18372254-18372273 Msa0980340:CDS 35.0%
ATATATTCTTCCCAGTCCAT+TGG - chr6_4:18372273-18372292 None:intergenic 35.0%
TGAAAGAACAAAGCCCAAAA+AGG + chr6_4:18372316-18372335 Msa0980340:CDS 35.0%
! CTTCAAGTGCAAACCTTTTT+GGG - chr6_4:18372332-18372351 None:intergenic 35.0%
! ACTTCAAGTGCAAACCTTTT+TGG - chr6_4:18372333-18372352 None:intergenic 35.0%
CAACCTAAAGCATATGACAT+GGG - chr6_4:18372441-18372460 None:intergenic 35.0%
ACAACCTAAAGCATATGACA+TGG - chr6_4:18372442-18372461 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+TGG + chr6_4:18372452-18372471 Msa0980340:intron 35.0%
AATGTCTTCTGCATAAACTC+AGG + chr6_4:18372734-18372753 Msa0980340:intron 35.0%
ATGTCTTCTGCATAAACTCA+GGG + chr6_4:18372735-18372754 Msa0980340:intron 35.0%
!! TCTTGGTAATGAAGAGTACA+TGG - chr6_4:18372892-18372911 None:intergenic 35.0%
AATCAGCTACTTCATACTCT+TGG - chr6_4:18372909-18372928 None:intergenic 35.0%
AGTACCTTCGATGTGAAAAA+TGG - chr6_4:18372984-18373003 None:intergenic 35.0%
ATAGTCATACTACTCGATGT+GGG - chr6_4:18373159-18373178 None:intergenic 35.0%
!! AGCTTTGGAACATGTGAATT+AGG - chr6_4:18373316-18373335 None:intergenic 35.0%
!! GAAGTGAGATTTTGTTGTGT+TGG + chr6_4:18373347-18373366 Msa0980340:intron 35.0%
! ACTGATTTAGTGTGTGTTTG+GGG - chr6_4:18373436-18373455 None:intergenic 35.0%
AAATGCTGTCAATGTAGAGA+AGG - chr6_4:18373784-18373803 None:intergenic 35.0%
TTCAAATGGAAAACTTGGGT+GGG - chr6_4:18374072-18374091 None:intergenic 35.0%
TGTATTTCTCCATCGTTCTG+CGG - chr6_4:18370918-18370937 None:intergenic 40.0%
AAATGCACCAAGTGAAGAAC+AGG + chr6_4:18371023-18371042 Msa0980340:CDS 40.0%
!!! GGATGATTGTTTTTTCTGGC+AGG + chr6_4:18371125-18371144 Msa0980340:intron 40.0%
! CAACATTGATGGGCATATCA+TGG + chr6_4:18371484-18371503 Msa0980340:intron 40.0%
AGGGCTTCTATATCACTTTC+TGG + chr6_4:18371602-18371621 Msa0980340:intron 40.0%
GGGCTTCTATATCACTTTCT+GGG + chr6_4:18371603-18371622 Msa0980340:intron 40.0%
!! TATTCAGGCTAGGAAGTACT+TGG - chr6_4:18371699-18371718 None:intergenic 40.0%
AGTACTTCCTAGCCTGAATA+TGG + chr6_4:18371699-18371718 Msa0980340:intron 40.0%
TTCCTAGCCTGAATATGGAT+GGG + chr6_4:18371704-18371723 Msa0980340:intron 40.0%
GTCATGCCAAAGACATTCAT+AGG + chr6_4:18371786-18371805 Msa0980340:intron 40.0%
CGGAATCCTATGAATGTCTT+TGG - chr6_4:18371795-18371814 None:intergenic 40.0%
AAACAATTCCTCCAATGGAC+TGG + chr6_4:18372259-18372278 Msa0980340:CDS 40.0%
! AACAATTCCTCCAATGGACT+GGG + chr6_4:18372260-18372279 Msa0980340:CDS 40.0%
AGTTGACAACATAATCGGGT+AGG - chr6_4:18372375-18372394 None:intergenic 40.0%
TCTCCCATGTCATATGCTTT+AGG + chr6_4:18372435-18372454 Msa0980340:intron 40.0%
! TCCTCCAGAGATCATTTTGA+AGG + chr6_4:18372505-18372524 Msa0980340:CDS 40.0%
ACCTTCAAAATGATCTCTGG+AGG - chr6_4:18372509-18372528 None:intergenic 40.0%
TTATGAGCTACTGAGGAAAC+TGG + chr6_4:18372617-18372636 Msa0980340:CDS 40.0%
TAAAGCATGAAGTCTGCCAT+TGG + chr6_4:18372649-18372668 Msa0980340:CDS 40.0%
AAAGCATGAAGTCTGCCATT+GGG + chr6_4:18372650-18372669 Msa0980340:CDS 40.0%
TTACATAGTATGCTGCCCAA+TGG - chr6_4:18372668-18372687 None:intergenic 40.0%
!! GAAGAGTACATGGTAATGGT+GGG - chr6_4:18372882-18372901 None:intergenic 40.0%
!! TGAAGAGTACATGGTAATGG+TGG - chr6_4:18372883-18372902 None:intergenic 40.0%
!!! AAGGCCATTTTTCACATCGA+AGG + chr6_4:18372977-18372996 Msa0980340:CDS 40.0%
TCCTGAATGTGTGCAATGAT+AGG + chr6_4:18373013-18373032 Msa0980340:intron 40.0%
TCCTATCATTGCACACATTC+AGG - chr6_4:18373017-18373036 None:intergenic 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr6_4:18373119-18373138 Msa0980340:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr6_4:18373120-18373139 Msa0980340:intron 40.0%
CATAGTCATACTACTCGATG+TGG - chr6_4:18373160-18373179 None:intergenic 40.0%
AGGAAGGGTTCTCAAATACT+TGG + chr6_4:18373238-18373257 Msa0980340:intron 40.0%
CATGAGTTTCAAATCGATCC+TGG - chr6_4:18373555-18373574 None:intergenic 40.0%
ATTTGTCTCTGCTCTCAATC+AGG + chr6_4:18373635-18373654 Msa0980340:intron 40.0%
TTTGTCTCTGCTCTCAATCA+GGG + chr6_4:18373636-18373655 Msa0980340:intron 40.0%
CTCTACATTGACAGCATTTG+TGG + chr6_4:18373785-18373804 Msa0980340:intron 40.0%
TCCTTCCTCATTGCAACATT+TGG + chr6_4:18373831-18373850 Msa0980340:intron 40.0%
TTCAGCCAAATGTTGCAATG+AGG - chr6_4:18373839-18373858 None:intergenic 40.0%
TCATTGCAACATTTGGCTGA+AGG + chr6_4:18373838-18373857 Msa0980340:intron 40.0%
TCAAATGGAAAACTTGGGTG+GGG - chr6_4:18374071-18374090 None:intergenic 40.0%
CTTCAAATGGAAAACTTGGG+TGG - chr6_4:18374073-18374092 None:intergenic 40.0%
! GCCGAAGCACTAAGAGATAT+TGG - chr6_4:18370725-18370744 None:intergenic 45.0%
GTACATTAAGACAACGGGAG+CGG - chr6_4:18370999-18371018 None:intergenic 45.0%
CTTCCTAGCCTGAATATGGA+TGG + chr6_4:18371703-18371722 Msa0980340:intron 45.0%
ATCCCATCCATATTCAGGCT+AGG - chr6_4:18371709-18371728 None:intergenic 45.0%
GGCATGACCCTTATAGTAAC+TGG - chr6_4:18371774-18371793 None:intergenic 45.0%
AAGCTTGTGGAGCTTACTGT+TGG - chr6_4:18372111-18372130 None:intergenic 45.0%
TATTCTTCCCAGTCCATTGG+AGG - chr6_4:18372270-18372289 None:intergenic 45.0%
! GGCTACTTTATGAGCTACTG+AGG + chr6_4:18372610-18372629 Msa0980340:CDS 45.0%
! TTTTTCCCCCTCATTGAACC+AGG + chr6_4:18372931-18372950 Msa0980340:intron 45.0%
ATGTTCCTGGTTCAATGAGG+GGG - chr6_4:18372939-18372958 None:intergenic 45.0%
GATGTTCCTGGTTCAATGAG+GGG - chr6_4:18372940-18372959 None:intergenic 45.0%
CGATGTTCCTGGTTCAATGA+GGG - chr6_4:18372941-18372960 None:intergenic 45.0%
CCTCATTGAACCAGGAACAT+CGG + chr6_4:18372939-18372958 Msa0980340:intron 45.0%
GAAAAATGGCCTTCTGTCCA+AGG - chr6_4:18372970-18372989 None:intergenic 45.0%
TTGGGAATTCTACTCGCCAT+GGG + chr6_4:18373093-18373112 Msa0980340:intron 45.0%
GGTGTAGCATCTAAGTCGTT+TGG + chr6_4:18373188-18373207 Msa0980340:intron 45.0%
ATCAGTCTAGACGCGTGTTT+GGG + chr6_4:18373278-18373297 Msa0980340:intron 45.0%
!! CAATGACGGATAGTGTGTCA+TGG + chr6_4:18373496-18373515 Msa0980340:intron 45.0%
GAGTAGGTTCCTTAAACACG+TGG + chr6_4:18373528-18373547 Msa0980340:intron 45.0%
AAATAGGTCTTGGTACCTCG+AGG + chr6_4:18373611-18373630 Msa0980340:intron 45.0%
AATAGGTCTTGGTACCTCGA+GGG + chr6_4:18373612-18373631 Msa0980340:intron 45.0%
CTGCTCTCAATCAGGGAATA+CGG + chr6_4:18373643-18373662 Msa0980340:intron 45.0%
GCCAAATGTTGCAATGAGGA+AGG - chr6_4:18373835-18373854 None:intergenic 45.0%
TGCAACATTTGGCTGAAGGA+TGG + chr6_4:18373842-18373861 Msa0980340:intron 45.0%
ATCTCTTAGTGCTTCGGCCT+TGG + chr6_4:18370727-18370746 Msa0980340:intron 50.0%
ACATTCTCTCCGCAGAACGA+TGG + chr6_4:18370906-18370925 Msa0980340:CDS 50.0%
ATTAAGACAACGGGAGCGGA+TGG - chr6_4:18370995-18371014 None:intergenic 50.0%
TAGATCGGCGTTGTCAACTG+TGG + chr6_4:18371387-18371406 Msa0980340:intron 50.0%
GAAGGGCTACAACTTCCTTC+TGG + chr6_4:18372010-18372029 Msa0980340:CDS 50.0%
ATACGAGCAGCGAAACCAGA+AGG - chr6_4:18372028-18372047 None:intergenic 50.0%
GTGGAGCTTACTGTTGGACA+CGG - chr6_4:18372105-18372124 None:intergenic 50.0%
!! ACATGGTAATGGTGGGAGGA+GGG - chr6_4:18372875-18372894 None:intergenic 50.0%
!! TACATGGTAATGGTGGGAGG+AGG - chr6_4:18372876-18372895 None:intergenic 50.0%
!! GAGTACATGGTAATGGTGGG+AGG - chr6_4:18372879-18372898 None:intergenic 50.0%
CCGATGTTCCTGGTTCAATG+AGG - chr6_4:18372942-18372961 None:intergenic 50.0%
TGGCGAGTAGAATTCCCAAC+AGG - chr6_4:18373092-18373111 None:intergenic 50.0%
GTTGGGAATTCTACTCGCCA+TGG + chr6_4:18373092-18373111 Msa0980340:intron 50.0%
TGGGAATTCTACTCGCCATG+GGG + chr6_4:18373094-18373113 Msa0980340:intron 50.0%
!! ATGGGGGTTGATAGGGACTT+GGG + chr6_4:18373111-18373130 Msa0980340:intron 50.0%
CTCGATGTGGGACTTAGACA+GGG - chr6_4:18373147-18373166 None:intergenic 50.0%
ACTCGATGTGGGACTTAGAC+AGG - chr6_4:18373148-18373167 None:intergenic 50.0%
CATCAGTCTAGACGCGTGTT+TGG + chr6_4:18373277-18373296 Msa0980340:intron 50.0%
CTTCTCAAAGGACGCAGCTT+TGG - chr6_4:18373331-18373350 None:intergenic 50.0%
GACGGATAGTGTGTCATGGT+CGG + chr6_4:18373500-18373519 Msa0980340:intron 50.0%
GTTCCTTAAACACGTGGTCC+AGG + chr6_4:18373534-18373553 Msa0980340:intron 50.0%
GATCCTGGACCACGTGTTTA+AGG - chr6_4:18373540-18373559 None:intergenic 50.0%
TGGAAAACTTGGGTGGGGAT+GGG - chr6_4:18374066-18374085 None:intergenic 50.0%
ATGGAAAACTTGGGTGGGGA+TGG - chr6_4:18374067-18374086 None:intergenic 50.0%
!! ATGGTAATGGTGGGAGGAGG+GGG - chr6_4:18372873-18372892 None:intergenic 55.0%
!! CATGGTAATGGTGGGAGGAG+GGG - chr6_4:18372874-18372893 None:intergenic 55.0%
GGGAATTCTACTCGCCATGG+GGG + chr6_4:18373095-18373114 Msa0980340:intron 55.0%
! TACTCGCCATGGGGGTTGAT+AGG + chr6_4:18373103-18373122 Msa0980340:intron 55.0%
!! ACTCGCCATGGGGGTTGATA+GGG + chr6_4:18373104-18373123 Msa0980340:intron 55.0%
CAAGTCCCTATCAACCCCCA+TGG - chr6_4:18373112-18373131 None:intergenic 55.0%
!! CATGGGGGTTGATAGGGACT+TGG + chr6_4:18373110-18373129 Msa0980340:intron 55.0%
GTCATGGTCGGCAGATGAGT+AGG + chr6_4:18373512-18373531 Msa0980340:intron 55.0%
GAGCAGAGACAAATCCCTCG+AGG - chr6_4:18373629-18373648 None:intergenic 55.0%
GGAAAACTTGGGTGGGGATG+GGG - chr6_4:18374065-18374084 None:intergenic 55.0%
!! CACTTTCTGGGATTCGGCCG+TGG + chr6_4:18371615-18371634 Msa0980340:intron 60.0%
CAAGGCGCATCCGATGTTCC+TGG - chr6_4:18372952-18372971 None:intergenic 60.0%
CAGGAACATCGGATGCGCCT+TGG + chr6_4:18372950-18372969 Msa0980340:intron 60.0%
TCGGATGCGCCTTGGACAGA+AGG + chr6_4:18372958-18372977 Msa0980340:CDS 60.0%
AAACTTGGGTGGGGATGGGG+AGG - chr6_4:18374062-18374081 None:intergenic 60.0%
TTGGGTGGGGATGGGGAGGT+AGG - chr6_4:18374058-18374077 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 18370645 18374183 18370645 ID=Msa0980340;Name=Msa0980340
chr6_4 mRNA 18370645 18374183 18370645 ID=Msa0980340-mRNA-1;Parent=Msa0980340;Name=Msa0980340-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.71|0.75|0.87|0.85|0.87|8|0|222
chr6_4 exon 18370645 18370693 18370645 ID=Msa0980340-mRNA-1:exon:5688;Parent=Msa0980340-mRNA-1
chr6_4 exon 18370863 18371044 18370863 ID=Msa0980340-mRNA-1:exon:5689;Parent=Msa0980340-mRNA-1
chr6_4 exon 18371977 18372113 18371977 ID=Msa0980340-mRNA-1:exon:5690;Parent=Msa0980340-mRNA-1
chr6_4 exon 18372239 18372337 18372239 ID=Msa0980340-mRNA-1:exon:5691;Parent=Msa0980340-mRNA-1
chr6_4 exon 18372457 18372526 18372457 ID=Msa0980340-mRNA-1:exon:5692;Parent=Msa0980340-mRNA-1
chr6_4 exon 18372609 18372683 18372609 ID=Msa0980340-mRNA-1:exon:5693;Parent=Msa0980340-mRNA-1
chr6_4 exon 18372953 18372998 18372953 ID=Msa0980340-mRNA-1:exon:5694;Parent=Msa0980340-mRNA-1
chr6_4 exon 18374176 18374183 18374176 ID=Msa0980340-mRNA-1:exon:5695;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18370645 18370693 18370645 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18370863 18371044 18370863 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18371977 18372113 18371977 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18372239 18372337 18372239 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18372457 18372526 18372457 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18372609 18372683 18372609 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18372953 18372998 18372953 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
chr6_4 CDS 18374176 18374183 18374176 ID=Msa0980340-mRNA-1:cds;Parent=Msa0980340-mRNA-1
Gene Sequence

>Msa0980340

ATGGCTAAAAATAGACCCATTGATGCTAAAGGGAAGAAAGGATTTAAAGTTCTAGTGCTTAATGATGTGGACAAACTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACGATGGAGAAATACAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTACGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTGCAGTTCATTGGTAAGAAAGAAGGGCTACAACTTCCTTCTGGTTTCGCTGCTCGTATAGCAGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTGACAAACAAACAATTCCTCCAATGGACTGGGAAGAATATATTTCAGAAATTGCATCTGACATAATGAAAGAACAAAGCCCAAAAAGGTTGTTTCAAGTTCGTGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGAGGCTACTTTATGAGCTACTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTCTGCCATTGGGCAGCATACTATGAACATCGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGCATTAATG

Protein sequence

>Msa0980340

MAKNRPIDAKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEALM