AlfalfaGEDB | Msa1157870

M. sativa cultivar zhongmu-4 / Msa1157870

KEGG: K11420
GO: GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157870	XP_003624506.2	84.605	760	66	9	1	712	1	757	0.0	1256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157870	sp\|Q8GZB6\|SUVH4_ARATH	53.982	678	231	11	52	712	11	624	0.0	707

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157870	G7KXA0	84.605	760	66	9	1	712	1	757	0.0	1256

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TFs/TRs:

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Gene ID	Type	Classification
Msa1157870	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1157870	0.805061	1.600752e-49	-8.615850e-47
Msa0001940	Msa1157870	0.802422	5.652063e-49	-8.615850e-47
Msa0003700	Msa1157870	0.848957	4.401393e-60	-8.615850e-47
Msa0003720	Msa1157870	0.810769	9.777530e-51	-8.615850e-47
Msa0005890	Msa1157870	0.827138	1.846086e-54	-8.615850e-47
Msa0007480	Msa1157870	0.812339	4.457062e-51	-8.615850e-47
Msa0012940	Msa1157870	0.806097	9.706879e-50	-8.615850e-47
Msa0016670	Msa1157870	0.817538	3.131489e-52	-8.615850e-47
Msa0017510	Msa1157870	0.811652	6.289151e-51	-8.615850e-47
Msa0018000	Msa1157870	0.818346	2.056627e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157870	MtrunA17_Chr7g0252211	84.605	760	66	9	1	712	1	757	0.0	1256
Msa1157870	MtrunA17_Chr6g0476111	87.032	694	56	5	53	712	1	694	0.0	1115
Msa1157870	MtrunA17_Chr6g0476121	88.436	614	39	5	131	712	30	643	0.0	1082
Msa1157870	MtrunA17_Chr5g0399801	42.259	478	237	10	250	712	636	1089	1.15e-110	360
Msa1157870	MtrunA17_Chr4g0003501	38.053	565	289	14	161	712	439	955	1.85e-109	354
Msa1157870	MtrunA17_Chr4g0003511	37.676	568	289	13	161	712	534	1052	6.85e-107	349
Msa1157870	MtrunA17_Chr7g0255181	38.784	477	243	12	250	708	256	701	3.55e-93	304
Msa1157870	MtrunA17_Chr3g0080761	36.495	485	264	12	250	708	194	660	1.69e-90	296
Msa1157870	MtrunA17_Chr8g0368911	31.928	664	345	21	50	682	162	749	6.41e-90	298
Msa1157870	MtrunA17_Chr8g0368901	37.448	478	251	14	235	684	301	758	5.15e-89	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157870	AT5G13960.1	53.982	678	231	11	52	712	11	624	0.0	707
Msa1157870	AT5G13960.2	65.784	491	150	3	239	712	1	490	0.0	690
Msa1157870	AT2G35160.5	35.678	583	281	15	153	712	247	758	2.18e-102	330
Msa1157870	AT2G35160.2	35.678	583	281	15	153	712	283	794	7.08e-102	330
Msa1157870	AT2G35160.3	35.678	583	281	15	153	712	283	794	7.08e-102	330
Msa1157870	AT2G35160.1	35.678	583	281	15	153	712	283	794	7.08e-102	330
Msa1157870	AT2G35160.4	35.678	583	281	15	153	712	283	794	7.08e-102	330
Msa1157870	AT2G22740.2	39.836	487	242	12	252	712	329	790	2.05e-101	329
Msa1157870	AT2G22740.1	39.836	487	242	12	252	712	329	790	2.05e-101	329
Msa1157870	AT1G73100.1	36.117	515	285	11	217	708	172	665	1.23e-93	305

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Find 195 sgRNAs with CRISPR-Local

Find 549 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGGCAACATTCC+AGG	0.377376	7_4:-46916274	Msa1157870:intron
AAAATGGGTTACCTGTAAAG+GGG	0.627551	7_4:+46911781	None:intergenic
AAAGACGTTGTGTTTGAATG+TGG	0.675624	7_4:-46912475	Msa1157870:CDS
AAATGGGTTACCTGTAAAGG+GGG	0.674129	7_4:+46911782	None:intergenic
AACAACACAATCATTCGCAA+CGG	0.656487	7_4:+46918367	None:intergenic
AACGCAAGTAGCAGTTACAC+TGG	0.648305	7_4:-46914586	Msa1157870:CDS
AACGGAGAAGAAGAAGGAAG+AGG	0.598778	7_4:-46918024	Msa1157870:CDS
AACGTGAGCTGATGGAGGTT+TGG	0.428185	7_4:-46917950	Msa1157870:CDS
AAGAGGACTTAAATATCGTC+TGG	0.469483	7_4:-46912407	Msa1157870:CDS
AAGATTAAGGTGAAATACGG+TGG	0.617774	7_4:-46918308	Msa1157870:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAACCTTCAAAAGCTT+CGG	+	chr7_4:46910950-46910969	None:intergenic	30.0%
GTGAAGATTAAGGTGAAATA+CGG	-	chr7_4:46910980-46910999	Msa1157870:three_prime_UTR	30.0%
TAACAAGCACTATCTTCATT+TGG	-	chr7_4:46911456-46911475	Msa1157870:intron	30.0%
AGAGAGATACAAAACAACTA+TGG	+	chr7_4:46911786-46911805	None:intergenic	30.0%
ACAACTTATGACATTCTCAT+AGG	-	chr7_4:46912105-46912124	Msa1157870:intron	30.0%
TAGCAACCAAAATCCTATAT+TGG	+	chr7_4:46912593-46912612	None:intergenic	30.0%
AAAAGAACAGACTTTGATTC+TGG	+	chr7_4:46912934-46912953	None:intergenic	30.0%
TGTGCTATGTTCAAAAAACA+GGG	+	chr7_4:46913357-46913376	None:intergenic	30.0%
ATGTGCTATGTTCAAAAAAC+AGG	+	chr7_4:46913358-46913377	None:intergenic	30.0%
AGCACATGATCATCATTAAA+AGG	-	chr7_4:46913371-46913390	Msa1157870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	46910886	46918427	46910886	ID=Msa1157870;Name=Msa1157870
chr7_4	mRNA	46910886	46918427	46910886	ID=Msa1157870-mRNA-1;Parent=Msa1157870;Name=Msa1157870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=7\|0.68\|0.70\|1\|0.62\|0.58\|17\|351\|712
chr7_4	exon	46910886	46910939	46910886	ID=Msa1157870-mRNA-1:exon:12478;Parent=Msa1157870-mRNA-1
chr7_4	exon	46910972	46911382	46910972	ID=Msa1157870-mRNA-1:exon:12477;Parent=Msa1157870-mRNA-1
chr7_4	exon	46911793	46912026	46911793	ID=Msa1157870-mRNA-1:exon:12476;Parent=Msa1157870-mRNA-1
chr7_4	exon	46912130	46912312	46912130	ID=Msa1157870-mRNA-1:exon:12475;Parent=Msa1157870-mRNA-1
chr7_4	exon	46912405	46912510	46912405	ID=Msa1157870-mRNA-1:exon:12474;Parent=Msa1157870-mRNA-1
chr7_4	exon	46912582	46912724	46912582	ID=Msa1157870-mRNA-1:exon:12473;Parent=Msa1157870-mRNA-1
chr7_4	exon	46913390	46913450	46913390	ID=Msa1157870-mRNA-1:exon:12472;Parent=Msa1157870-mRNA-1
chr7_4	exon	46913531	46913580	46913531	ID=Msa1157870-mRNA-1:exon:12471;Parent=Msa1157870-mRNA-1
chr7_4	exon	46914047	46914145	46914047	ID=Msa1157870-mRNA-1:exon:12470;Parent=Msa1157870-mRNA-1
chr7_4	exon	46914555	46914653	46914555	ID=Msa1157870-mRNA-1:exon:12469;Parent=Msa1157870-mRNA-1
chr7_4	exon	46915684	46915854	46915684	ID=Msa1157870-mRNA-1:exon:12468;Parent=Msa1157870-mRNA-1
chr7_4	exon	46915979	46916088	46915979	ID=Msa1157870-mRNA-1:exon:12467;Parent=Msa1157870-mRNA-1
chr7_4	exon	46916275	46916329	46916275	ID=Msa1157870-mRNA-1:exon:12466;Parent=Msa1157870-mRNA-1
chr7_4	exon	46917306	46917452	46917306	ID=Msa1157870-mRNA-1:exon:12465;Parent=Msa1157870-mRNA-1
chr7_4	exon	46917836	46918069	46917836	ID=Msa1157870-mRNA-1:exon:12464;Parent=Msa1157870-mRNA-1
chr7_4	exon	46918076	46918321	46918076	ID=Msa1157870-mRNA-1:exon:12463;Parent=Msa1157870-mRNA-1
chr7_4	exon	46918334	46918427	46918334	ID=Msa1157870-mRNA-1:exon:12462;Parent=Msa1157870-mRNA-1
chr7_4	five_prime_UTR	46918421	46918427	46918421	ID=Msa1157870-mRNA-1:five_prime_utr;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46918334	46918420	46918334	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46918076	46918321	46918076	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46917836	46918069	46917836	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46917306	46917452	46917306	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46916275	46916329	46916275	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46915979	46916088	46915979	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46915684	46915854	46915684	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46914555	46914653	46914555	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46914047	46914145	46914047	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46913531	46913580	46913531	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46913390	46913450	46913390	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46912582	46912724	46912582	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46912405	46912510	46912405	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46912130	46912312	46912130	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46911793	46912026	46911793	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	CDS	46911269	46911382	46911269	ID=Msa1157870-mRNA-1:cds;Parent=Msa1157870-mRNA-1
chr7_4	three_prime_UTR	46910972	46911268	46910972	ID=Msa1157870-mRNA-1:three_prime_utr;Parent=Msa1157870-mRNA-1
chr7_4	three_prime_UTR	46910886	46910939	46910886	ID=Msa1157870-mRNA-1:three_prime_utr;Parent=Msa1157870-mRNA-1

Gene Sequence

>Msa1157870

ATGGTTGCGCAATCGTTGGAGATTCGTGATTCCGTTGCGAATGATTGTGTTGTTCCGAAGCTTTTGAAGGTTTCAATGAATCCTAAGGTGAAATACGGTGGAAAGAAGCTGAAAGATGAATCGAAGGATGCGACGGTGACGACGGAGGTGACACCAATGTCGTCGCAGAGGAGATCGAGTTCGAGGATTCAAGCTAAGCAGAAAGAGGTTGAAGAGATTCAGCTTCGCCGGAAAGCTGAGGGGGTAGAAGCTGAAGAGAAATCCGACGAGGTTGAGGTTTCGCCGGTGAAGTCCAGGAAGCGTGTGAAGAGAAGTCCTAGTAGGGAGAGTGTGGAGGTTGTTGAGGAGAAAGAAACAACGGAGAAGAAGAAGGAAGAGGTTGTTGTCGAGGGGAAACCGACAAAGAAGAAGAAATCGGCGTCTGATGAGAAACGTGAGCTGATGGAGGTTTGGAATGAGAAAATGGCTGCGGAAACTGAAAATGCTGGTGGTGCATTGAGTGATAAGAGCTCAACGGCGAAGGTGAAAGAGACTATTAGAACTTTTAACAAGCACTATCTTCATTTGGAAGAAGAGGAGAGGGTTGCTAAAGAGAAAGCTGAATTTGAGAAGACAAGTGGCGGGAAGAAATCTGCTGCCGATAAGAAAGCTGCTAAAAAGAAATCTCCTGAGAAGAAATCGCCTAAAAAATCTCCAGGGAAGAAGTCCCATAAGATGATGCAAAATAATGAGATACTGTACCCTCACAAAAGAATTGGCAACATTCCAGGCATAGAGGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTGAATGGCATTGATTTTATCGGCCAATCTTATTCCAAAACGTACAAGCTTGATCTCCCAGTTGCTGTGGCCATTGTTATTTCAGGCATGTATGAGGATGATCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACTGGTAATAAGCGTCAGATTAATGATCAAAAGTTGGAGAGGGGTAATTTAGCACTCAAGAACTGCTGCGTTCAAAATGTGCCAGTAAGGGTGATTCGAGGTCATAACGCAAGTAGCAGTTACACTGGTAAAGTCTACACATATGATGGCTTGTACAAGGTTGACCGCTATTGGGCAGAGAAGGGATTATCTGGCTTCACAGTATACAAGTTTCTTCTCAAGAGGGTTGAAGGACAGCCTACATTAACAACAAATCAGGTTTATTTCACAATGGGACGTGTACCTCAGTCTACAGCAGAAATACGAGGGTTGATCTGTGAGGATATCACTAACGGTCAGGAAGGTGTGCCCATTCCAGCGACAAATTTGTCTCTGAAGGTTGCAAAAAGTGTTAAGCTTCCTGTGAGTGCCTCTGGATGCAAATGCAATGGCAAATGTATTGATCCAAACACCTGTGAATGTGCGAAGCGCAATGGCTCTGAATTTCCCTATGTGTCTAAAGATGGTGGCAGATTAATTGAAGCTAAAGACGTTGTGTTTGAATGTGGTCCCAATTGTGGCTGTGGCCCTGAGTGTGTGAATAGGACTTCTCAAAGAGGACTTAAATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCCGGTGCACCAGTTTGTGAGTACACAGGAATACTTGGTAGGACAGAAGACGTGGACAGTGTATTGGAAAACAACTATATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGGGAGAGGCGGTCAAAAAATGTAGCATATGCTTCAAGTTTGCTGGAAAAATACAATGACCAAGATTCTGAAAGTGCGCCAGAGTTTTGCATTGATGCAGGGTCTACTGGAAATGTTGCTAGGTTTATAAACCATTGCTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTGGTGCTGTTTGCCGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCACTTGATAGTGTCTTGGACTCTGATGGGAAGATAAAGCAATTGGCGTGCTATTGTGGAGCTACAGGCTGCAGGAAGCGATTATTCTAA

Protein sequence

>Msa1157870

MVAQSLEIRDSVANDCVVPKLLKVSMNPKVKYGGKKLKDESKDATVTTEVTPMSSQRRSSSRIQAKQKEVEEIQLRRKAEGVEAEEKSDEVEVSPVKSRKRVKRSPSRESVEVVEEKETTEKKKEEVVVEGKPTKKKKSASDEKRELMEVWNEKMAAETENAGGALSDKSSTAKVKETIRTFNKHYLHLEEEERVAKEKAEFEKTSGGKKSAADKKAAKKKSPEKKSPKKSPGKKSHKMMQNNEILYPHKRIGNIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDFIGQSYSKTYKLDLPVAVAIVISGMYEDDLDNAEDVVYTGQGGHNLTGNKRQINDQKLERGNLALKNCCVQNVPVRVIRGHNASSSYTGKVYTYDGLYKVDRYWAEKGLSGFTVYKFLLKRVEGQPTLTTNQVYFTMGRVPQSTAEIRGLICEDITNGQEGVPIPATNLSLKVAKSVKLPVSASGCKCNGKCIDPNTCECAKRNGSEFPYVSKDGGRLIEAKDVVFECGPNCGCGPECVNRTSQRGLKYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRTEDVDSVLENNYIFEIDCLQTIKGLGGRERRSKNVAYASSLLEKYNDQDSESAPEFCIDAGSTGNVARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQLACYCGATGCRKRLF*