AlfalfaGEDB | Msa0997290

M. sativa cultivar zhongmu-4 / Msa0997290

KEGG: K05350
GO: GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997290	XP_013442682.1	94.358	514	14	1	1	499	1	514	0.0	1006

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997290	sp\|Q9LV33\|BGL44_ARATH	77.096	489	96	2	25	497	21	509	0.0	786

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997290	A0A072TH37	94.358	514	14	1	1	499	1	514	0.0	1006

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028410	Msa0997290	0.813008	3.180306e-51	-8.615850e-47
Msa0089410	Msa0997290	0.805770	1.136836e-49	-8.615850e-47
Msa0124070	Msa0997290	0.808720	2.696114e-50	-8.615850e-47
Msa0398990	Msa0997290	0.804077	2.567895e-49	-8.615850e-47
Msa0409300	Msa0997290	-0.808060	3.728274e-50	-8.615850e-47
Msa0457750	Msa0997290	0.800394	1.471458e-48	-8.615850e-47
Msa0621870	Msa0997290	0.824676	7.094337e-54	-8.615850e-47
Msa0669710	Msa0997290	0.821094	4.846697e-53	-8.615850e-47
Msa0669750	Msa0997290	0.818917	1.525970e-52	-8.615850e-47
Msa0693150	Msa0997290	0.800273	1.556973e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997290	MtrunA17_Chr6g0482941	94.358	514	14	1	1	499	1	514	0.0	1006
Msa0997290	MtrunA17_Chr6g0482951	91.829	514	27	1	1	499	1	514	0.0	983
Msa0997290	MtrunA17_Chr4g0043091	51.200	500	223	5	21	499	6	505	7.27e-179	511
Msa0997290	MtrunA17_Chr4g0033271	49.109	505	234	8	15	497	8	511	1.33e-167	483
Msa0997290	MtrunA17_Chr6g0482081	50.593	506	220	9	21	498	11	514	5.01e-167	482
Msa0997290	MtrunA17_Chr4g0042171	50.737	475	212	5	43	495	24	498	7.06e-167	481
Msa0997290	MtrunA17_Chr3g0090131	51.059	472	202	7	43	495	21	482	4.25e-166	478
Msa0997290	MtrunA17_Chr6g0482131	50.209	478	216	6	43	498	36	513	5.36e-166	479
Msa0997290	MtrunA17_Chr4g0033201	48.521	507	235	9	14	497	9	512	2.79e-165	477
Msa0997290	MtrunA17_Chr6g0482071	47.665	514	242	8	10	499	5	515	1.89e-164	475

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997290	AT3G18080.1	77.096	489	96	2	25	497	21	509	0.0	786
Msa0997290	AT3G18070.3	71.197	493	116	4	25	499	10	494	0.0	733
Msa0997290	AT3G18070.1	70.994	493	123	4	25	499	10	500	0.0	731
Msa0997290	AT3G18070.4	73.371	353	89	3	25	374	10	360	0.0	546
Msa0997290	AT3G18070.2	72.121	330	76	2	186	499	94	423	5.33e-177	504
Msa0997290	AT3G18070.2	60.976	82	30	1	25	104	10	91	1.26e-24	106
Msa0997290	AT3G18070.7	73.312	311	67	2	205	499	1	311	3.77e-170	482
Msa0997290	AT1G26560.1	50.105	475	215	6	43	495	32	506	8.42e-167	481
Msa0997290	AT5G54570.1	51.452	482	211	6	37	495	24	505	2.52e-166	481
Msa0997290	AT5G44640.1	47.929	507	238	8	13	499	5	505	7.85e-156	453

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Find 97 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCCTGGCTATCAAT+CGG	0.514691	6_4:-76539349	Msa0997290:CDS
AAATTGTGAGCTACAGTATA+AGG	0.347951	6_4:+76540218	None:intergenic
AACAACTCTTGGTTCATTGA+AGG	0.467652	6_4:+76540331	None:intergenic
AACCAATATGCAGACATCTT+AGG	0.282698	6_4:+76538368	None:intergenic
AACTTCTGCTTATCAAGTAG+AGG	0.544999	6_4:-76542616	Msa0997290:CDS
AACTTTGATACAGATGGAAC+TGG	0.454790	6_4:-76540793	Msa0997290:intron
AATACCGGTTCTCAATCTCG+TGG	0.697678	6_4:-76540907	Msa0997290:CDS
AATTGTACAGCTGGAAATTC+AGG	0.314656	6_4:-76540248	Msa0997290:CDS
ACAAGAATAAACTATTACAA+AGG	0.503666	6_4:-76538542	Msa0997290:CDS
ACAGGAAGATATAGATCTCA+TGG	0.540465	6_4:-76540948	Msa0997290:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAACATCCCAAATACTA+GGG	+	chr6_4:76538426-76538445	None:intergenic	30.0%
ATGAAAACATCCCAAATACT+AGG	+	chr6_4:76538427-76538446	None:intergenic	30.0%
CATTATGTTACTCCTCTAAA+AGG	-	chr6_4:76539290-76539309	Msa0997290:intron	30.0%
TCTCAAATTATTAGTGGTGT+CGG	+	chr6_4:76539515-76539534	None:intergenic	30.0%
CTTAAACCAATTTGATCTCA+AGG	+	chr6_4:76539732-76539751	None:intergenic	30.0%
TCAAGTATGTTCAATTTGAC+AGG	-	chr6_4:76540025-76540044	Msa0997290:intron	30.0%
ATCGATTACTTACTCGAAAA+GGG	-	chr6_4:76540261-76540280	Msa0997290:CDS	30.0%
CTATGTTAGTATTTCGACTA+TGG	+	chr6_4:76540302-76540321	None:intergenic	30.0%
TATTTCAACTCAAGAGCTAA+AGG	+	chr6_4:76540425-76540444	None:intergenic	30.0%
AAATTGTGAGCTACAGTATA+AGG	+	chr6_4:76540776-76540795	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	76538136	76542877	76538136	ID=Msa0997290;Name=Msa0997290
chr6_4	mRNA	76538136	76542877	76538136	ID=Msa0997290-mRNA-1;Parent=Msa0997290;Name=Msa0997290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=47\|0.9\|0.90\|1\|0.9\|0.81\|11\|204\|499
chr6_4	exon	76538136	76538614	76538136	ID=Msa0997290-mRNA-1:exon:14422;Parent=Msa0997290-mRNA-1
chr6_4	exon	76538742	76538844	76538742	ID=Msa0997290-mRNA-1:exon:14421;Parent=Msa0997290-mRNA-1
chr6_4	exon	76539341	76539545	76539341	ID=Msa0997290-mRNA-1:exon:14420;Parent=Msa0997290-mRNA-1
chr6_4	exon	76539829	76539944	76539829	ID=Msa0997290-mRNA-1:exon:14419;Parent=Msa0997290-mRNA-1
chr6_4	exon	76540169	76540421	76540169	ID=Msa0997290-mRNA-1:exon:14418;Parent=Msa0997290-mRNA-1
chr6_4	exon	76540542	76540629	76540542	ID=Msa0997290-mRNA-1:exon:14417;Parent=Msa0997290-mRNA-1
chr6_4	exon	76540731	76540802	76540731	ID=Msa0997290-mRNA-1:exon:14416;Parent=Msa0997290-mRNA-1
chr6_4	exon	76540891	76540966	76540891	ID=Msa0997290-mRNA-1:exon:14415;Parent=Msa0997290-mRNA-1
chr6_4	exon	76541149	76541207	76541149	ID=Msa0997290-mRNA-1:exon:14414;Parent=Msa0997290-mRNA-1
chr6_4	exon	76542556	76542842	76542556	ID=Msa0997290-mRNA-1:exon:14413;Parent=Msa0997290-mRNA-1
chr6_4	exon	76542865	76542877	76542865	ID=Msa0997290-mRNA-1:exon:14412;Parent=Msa0997290-mRNA-1
chr6_4	five_prime_UTR	76542865	76542877	76542865	ID=Msa0997290-mRNA-1:five_prime_utr;Parent=Msa0997290-mRNA-1
chr6_4	five_prime_UTR	76542809	76542842	76542809	ID=Msa0997290-mRNA-1:five_prime_utr;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76542556	76542808	76542556	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76541149	76541207	76541149	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76540891	76540966	76540891	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76540731	76540802	76540731	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76540542	76540629	76540542	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76540169	76540421	76540169	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76539829	76539944	76539829	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76539341	76539545	76539341	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76538742	76538844	76538742	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	CDS	76538340	76538614	76538340	ID=Msa0997290-mRNA-1:cds;Parent=Msa0997290-mRNA-1
chr6_4	three_prime_UTR	76538136	76538339	76538136	ID=Msa0997290-mRNA-1:three_prime_utr;Parent=Msa0997290-mRNA-1

Gene Sequence

>Msa0997290

ATGGTGATGTTGGATTCACAACAGCATCAATGTTTCTATTACATGTTTTTCTTCTTCTTAATTGTTGTTGTTAGTTCAGCTAATGGTGTTACAGTGCCTGAAACAGTGCATTTGGATACTGGAGGGTTGAGTAGAGATGTTTTTCCTAAAGGGTTTGTGTTTGGAGTTGCAACTTCTGCTTATCAAGTAGAGGGTATGGCTAGCAAAGAGGGCCGTGGCCCTAGTATTTGGGATGTTTTCATCAAAAAACCTGGGATTGTCGCAAATAATGGCACAGGAGAAGTTTCTGTCGATCAATATCATCGCTACAAAGAAGATATAGATCTCATGGCAAAGCTAAATTTTGATCAATACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAATGGAACTGGCAAGGTAAATTGGAAAGGTGTAGCATACTACAACAGATTGATCGATTACTTACTCGAAAAGGGCATTACTCCTTACGCAAATCTCTACCATTATGACCTTCCTTTAGCTCTTGAGTTGAAATACAACGGTTTATTGAGCCGTAATGTTGTGAAAGATTTTGCGGATTATGCGGATTTTTGTTTCAAGACATATGGAGATAGAGTTAAGAACTGGATGACCTTCAATGAACCAAGAGTTGTTGCTGCTCTTGGCTATGATAATGGCTTTTTTGCCCCTGGAAGGTGTTCAAAAGAATATGGAAATTGTACAGCTGGAAATTCAGGAACTGAGCCTTATACTGTAGCTCACAATTTGATATTGTCACATGCTGCTGCTGCTCAAAGATATAGAGAGAAATACCAAGAAAAGCAAAAGGGTAGGATTGGAATTTTGTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGATAACTACGCTGCTCAAAGAGCTAGAGATTTTCATATTGGCTGGTTCATTCATCCCCTTGTTTATGGTGAGTATCCAAGAACTATGCAAAATATTGTTGGGAACAGACTCCCAAAGTTTACTGAGGAGGAAGTGAAACTTGTGAAGGGCTCAATTGATTTTGTTGGTATTAATCAATATACTACTTACTACATGTATGATCCTCATCAAGCAAAACCAAAAGTCCCTGGCTATCAATCGGATTGGAATGCATATTCATCTTGGCTATACAATGTACCATGGGGCTTGTACAAATCAGTAATGTACATCAAGGAGCATTATAAAAACCCACCTATGTACTTATCTGAAAATGGCATGGATGATCCTGGTAATGTAACATTTTCCAAGGGTTTACATGACACAACAAGAATAAACTATTACAAAGGGTATTTGACTCAACTAAAGAAAGCTATAGATGATGGAGCAAATGTGTTTGGATACCATGCTTGGTCATTGCTTGATAACTTTGAATGGAGATTAGGGTACACATCAAGGTTTGGTATTGTCTATGTTGACTTCAAAACTCTCAAGAGAACCCCTAAGATGTCTGCATATTGGTTCAAGCAGCTACTTACCAAAAAGAAGTAA

Protein sequence

>Msa0997290

MVMLDSQQHQCFYYMFFFFLIVVVSSANGVTVPETVHLDTGGLSRDVFPKGFVFGVATSAYQVEGMASKEGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMAKLNFDQYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYLLEKGITPYANLYHYDLPLALELKYNGLLSRNVVKDFADYADFCFKTYGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYTVAHNLILSHAAAAQRYREKYQEKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHIGWFIHPLVYGEYPRTMQNIVGNRLPKFTEEEVKLVKGSIDFVGINQYTTYYMYDPHQAKPKVPGYQSDWNAYSSWLYNVPWGLYKSVMYIKEHYKNPPMYLSENGMDDPGNVTFSKGLHDTTRINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAYWFKQLLTKKK*